Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0083150 | AES61869.1 | 75.510 | 147 | 22 | 2 | 1 | 135 | 1 | 145 | 6.01e-70 | 217 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0083150 | G7I2W4 | 75.510 | 147 | 22 | 2 | 1 | 135 | 1 | 145 | 2.87e-70 | 217 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0083150 | TF | C2C2-GATA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0083150 | MtrunA17_Chr5g0399781 | 48.214 | 56 | 28 | 1 | 4 | 59 | 13 | 67 | 2.92e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 23 sgRNAs with CRISPR-Local
Find 298 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAGTCTTCAAGGGTTCCTT+TGG | 0.332237 | 1_2:+62178480 | None:intergenic |
| CACAAGATTGGCTTCTCATA+TGG | 0.363409 | 1_2:+62178529 | None:intergenic |
| TTTCAACAGAAACTAAAGTT+TGG | 0.373286 | 1_2:-62178561 | Msa0083150:CDS |
| ATACTTTGCTGAGCTATCTT+CGG | 0.400089 | 1_2:+62178454 | None:intergenic |
| GACTATGAGGCCGACACTAA+TGG | 0.401191 | 1_2:-62176506 | Msa0083150:CDS |
| TACTTTGCTGAGCTATCTTC+GGG | 0.431538 | 1_2:+62178455 | None:intergenic |
| CCACAGGCGTTACACAAGAT+TGG | 0.446240 | 1_2:+62178517 | None:intergenic |
| GAAACTAAAGTTTGGCGTAA+AGG | 0.450000 | 1_2:-62178553 | Msa0083150:CDS |
| TCTTCGGGAGATAGTCTTCA+AGG | 0.462167 | 1_2:+62178470 | None:intergenic |
| CCGAGGCCGATCTCATTACT+TGG | 0.470301 | 1_2:+62176361 | None:intergenic |
| CGCCTGTGGATTGCATTTCA+AGG | 0.472275 | 1_2:-62178503 | Msa0083150:CDS |
| CCAAGTAATGAGATCGGCCT+CGG | 0.503977 | 1_2:-62176361 | Msa0083150:CDS |
| GGCCTTGAAATGCAATCCAC+AGG | 0.512475 | 1_2:+62178501 | None:intergenic |
| GTCAGTGTCTCCATTAGTGT+CGG | 0.538511 | 1_2:+62176496 | None:intergenic |
| ATTAGTGTCGGCCTCATAGT+CGG | 0.574226 | 1_2:+62176508 | None:intergenic |
| AGAGGTCGGCACCGACTATG+AGG | 0.586753 | 1_2:-62176519 | Msa0083150:CDS |
| AATGGAGACACTGACACCAA+TGG | 0.595378 | 1_2:-62176488 | Msa0083150:CDS |
| TTTATACCAAGTAATGAGAT+CGG | 0.595926 | 1_2:-62176367 | Msa0083150:CDS |
| CCAATCTTGTGTAACGCCTG+TGG | 0.600058 | 1_2:-62178517 | Msa0083150:CDS |
| CTTCGGGAGATAGTCTTCAA+GGG | 0.601274 | 1_2:+62178471 | None:intergenic |
| GGATTGCATTTCAAGGCCAA+AGG | 0.606742 | 1_2:-62178496 | Msa0083150:CDS |
| TCTTTAAAAGAGTGCAACCG+AGG | 0.662832 | 1_2:+62176344 | None:intergenic |
| GGAGACACTGACACCAATGG+AGG | 0.696756 | 1_2:-62176485 | Msa0083150:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATATTTTAAAAACTTTAG+CGG | + | chr1_2:62176643-62176662 | None:intergenic | 10.0% |
| !!! | ATATATTTTAAAAACTTTAG+CGG | + | chr1_2:62176643-62176662 | None:intergenic | 10.0% |
| !! | ATAGAATCATCTTTAAATTA+TGG | + | chr1_2:62177262-62177281 | None:intergenic | 15.0% |
| !! | TAATCATTTATTTGTATCAT+CGG | + | chr1_2:62178265-62178284 | None:intergenic | 15.0% |
| !! | TCATATACAATACATATTAA+TGG | + | chr1_2:62178289-62178308 | None:intergenic | 15.0% |
| !! | ATAGAATCATCTTTAAATTA+TGG | + | chr1_2:62177262-62177281 | None:intergenic | 15.0% |
| !! | TAATCATTTATTTGTATCAT+CGG | + | chr1_2:62178265-62178284 | None:intergenic | 15.0% |
| !! | TCATATACAATACATATTAA+TGG | + | chr1_2:62178289-62178308 | None:intergenic | 15.0% |
| !!! | CTTTAAATTTGGTGAAATAT+GGG | + | chr1_2:62176525-62176544 | None:intergenic | 20.0% |
| !!! | AATAACTTCAGCTTTAAATT+TGG | + | chr1_2:62176536-62176555 | None:intergenic | 20.0% |
| !! | GAAAAATGGATGATATAAAA+TGG | + | chr1_2:62176569-62176588 | None:intergenic | 20.0% |
| !! | ATGCATTATAAAAGGAAAAA+TGG | + | chr1_2:62176583-62176602 | None:intergenic | 20.0% |
| !! | ATCAATCAATGCATTATAAA+AGG | + | chr1_2:62176591-62176610 | None:intergenic | 20.0% |
| !! | CAACTCATATATAAATGTTA+GGG | + | chr1_2:62176813-62176832 | None:intergenic | 20.0% |
| !! | ACAACTCATATATAAATGTT+AGG | + | chr1_2:62176814-62176833 | None:intergenic | 20.0% |
| !! | TTATAATATCATTAGCGTAA+AGG | + | chr1_2:62177473-62177492 | None:intergenic | 20.0% |
| !! | TTTACGCTAATGATATTATA+AGG | - | chr1_2:62177472-62177491 | Msa0083150:intron | 20.0% |
| !!! | ATTTTGCTTATAATATTGAC+CGG | + | chr1_2:62177819-62177838 | None:intergenic | 20.0% |
| !!! | TAAGCAAAATTTCACTTTTT+AGG | - | chr1_2:62177829-62177848 | Msa0083150:intron | 20.0% |
| !!! | TTTTTGTTTATAATAGTGAC+CGG | - | chr1_2:62177928-62177947 | Msa0083150:intron | 20.0% |
| !!! | AACAAAAACTTTTCAATCTA+TGG | - | chr1_2:62178412-62178431 | Msa0083150:intron | 20.0% |
| !!! | ACAAAAACTTTTCAATCTAT+GGG | - | chr1_2:62178413-62178432 | Msa0083150:intron | 20.0% |
| !!! | CTTTAAATTTGGTGAAATAT+GGG | + | chr1_2:62176525-62176544 | None:intergenic | 20.0% |
| !!! | AATAACTTCAGCTTTAAATT+TGG | + | chr1_2:62176536-62176555 | None:intergenic | 20.0% |
| !! | GAAAAATGGATGATATAAAA+TGG | + | chr1_2:62176569-62176588 | None:intergenic | 20.0% |
| !! | ATGCATTATAAAAGGAAAAA+TGG | + | chr1_2:62176583-62176602 | None:intergenic | 20.0% |
| !! | ATCAATCAATGCATTATAAA+AGG | + | chr1_2:62176591-62176610 | None:intergenic | 20.0% |
| !! | CAACTCATATATAAATGTTA+GGG | + | chr1_2:62176813-62176832 | None:intergenic | 20.0% |
| !! | ACAACTCATATATAAATGTT+AGG | + | chr1_2:62176814-62176833 | None:intergenic | 20.0% |
| !! | TTATAATATCATTAGCGTAA+AGG | + | chr1_2:62177473-62177492 | None:intergenic | 20.0% |
| !! | TTTACGCTAATGATATTATA+AGG | - | chr1_2:62177472-62177491 | Msa0083150:intron | 20.0% |
| !!! | ATTTTGCTTATAATATTGAC+CGG | + | chr1_2:62177819-62177838 | None:intergenic | 20.0% |
| !!! | TAAGCAAAATTTCACTTTTT+AGG | - | chr1_2:62177829-62177848 | Msa0083150:intron | 20.0% |
| !!! | TTTTTGTTTATAATAGTGAC+CGG | - | chr1_2:62177928-62177947 | Msa0083150:intron | 20.0% |
| !!! | AACAAAAACTTTTCAATCTA+TGG | - | chr1_2:62178412-62178431 | Msa0083150:intron | 20.0% |
| !!! | ACAAAAACTTTTCAATCTAT+GGG | - | chr1_2:62178413-62178432 | Msa0083150:intron | 20.0% |
| ! | TTTCAACAGAAACTAAAGTT+TGG | - | chr1_2:62176307-62176326 | Msa0083150:CDS | 25.0% |
| !!! | CAGATATTTTTTCAATGTCA+AGG | + | chr1_2:62176449-62176468 | None:intergenic | 25.0% |
| !! | GCTTTAAATTTGGTGAAATA+TGG | + | chr1_2:62176526-62176545 | None:intergenic | 25.0% |
| ! | AATGGATGATATAAAATGGA+GGG | + | chr1_2:62176565-62176584 | None:intergenic | 25.0% |
| ! | AAATGGATGATATAAAATGG+AGG | + | chr1_2:62176566-62176585 | None:intergenic | 25.0% |
| ! | TCGATTGAAAATGAAAATGA+TGG | - | chr1_2:62176674-62176693 | Msa0083150:intron | 25.0% |
| ! | CGATTGAAAATGAAAATGAT+GGG | - | chr1_2:62176675-62176694 | Msa0083150:intron | 25.0% |
| ! | CATTGTACGAATATTCTTAA+CGG | - | chr1_2:62176756-62176775 | Msa0083150:intron | 25.0% |
| ! | ATTGTACGAATATTCTTAAC+GGG | - | chr1_2:62176757-62176776 | Msa0083150:intron | 25.0% |
| !!! | ATTGATAGTGAAGCAAATTA+CGG | + | chr1_2:62176848-62176867 | None:intergenic | 25.0% |
| !!! | TTGTTCAAAAGTACTATTGT+TGG | - | chr1_2:62177079-62177098 | Msa0083150:intron | 25.0% |
| ! | TATTTGTCTAACTTGAAACA+TGG | + | chr1_2:62177339-62177358 | None:intergenic | 25.0% |
| ! | TCGTAATTTCTTTGATGTTA+TGG | - | chr1_2:62177606-62177625 | Msa0083150:intron | 25.0% |
| ! | CATTCAATAAATGATGTATG+TGG | - | chr1_2:62177854-62177873 | Msa0083150:intron | 25.0% |
| ! | CATTCAATAAATGATGTATG+TGG | + | chr1_2:62177854-62177873 | None:intergenic | 25.0% |
| ! | ATAGTTTACATTTCCTTGTT+AGG | - | chr1_2:62177965-62177984 | Msa0083150:intron | 25.0% |
| ! | TTTATACCAAGTAATGAGAT+CGG | - | chr1_2:62178501-62178520 | Msa0083150:CDS | 25.0% |
| ! | TTTCAACAGAAACTAAAGTT+TGG | - | chr1_2:62176307-62176326 | Msa0083150:CDS | 25.0% |
| !!! | CAGATATTTTTTCAATGTCA+AGG | + | chr1_2:62176449-62176468 | None:intergenic | 25.0% |
| !! | GCTTTAAATTTGGTGAAATA+TGG | + | chr1_2:62176526-62176545 | None:intergenic | 25.0% |
| ! | AATGGATGATATAAAATGGA+GGG | + | chr1_2:62176565-62176584 | None:intergenic | 25.0% |
| ! | AAATGGATGATATAAAATGG+AGG | + | chr1_2:62176566-62176585 | None:intergenic | 25.0% |
| ! | TCGATTGAAAATGAAAATGA+TGG | - | chr1_2:62176674-62176693 | Msa0083150:intron | 25.0% |
| ! | CGATTGAAAATGAAAATGAT+GGG | - | chr1_2:62176675-62176694 | Msa0083150:intron | 25.0% |
| ! | CATTGTACGAATATTCTTAA+CGG | - | chr1_2:62176756-62176775 | Msa0083150:intron | 25.0% |
| ! | ATTGTACGAATATTCTTAAC+GGG | - | chr1_2:62176757-62176776 | Msa0083150:intron | 25.0% |
| !!! | ATTGATAGTGAAGCAAATTA+CGG | + | chr1_2:62176848-62176867 | None:intergenic | 25.0% |
| !!! | TTGTTCAAAAGTACTATTGT+TGG | - | chr1_2:62177079-62177098 | Msa0083150:intron | 25.0% |
| ! | TATTTGTCTAACTTGAAACA+TGG | + | chr1_2:62177339-62177358 | None:intergenic | 25.0% |
| ! | TCGTAATTTCTTTGATGTTA+TGG | - | chr1_2:62177606-62177625 | Msa0083150:intron | 25.0% |
| ! | CATTCAATAAATGATGTATG+TGG | - | chr1_2:62177854-62177873 | Msa0083150:intron | 25.0% |
| ! | CATTCAATAAATGATGTATG+TGG | + | chr1_2:62177854-62177873 | None:intergenic | 25.0% |
| ! | ATAGTTTACATTTCCTTGTT+AGG | - | chr1_2:62177965-62177984 | Msa0083150:intron | 25.0% |
| ! | TTTATACCAAGTAATGAGAT+CGG | - | chr1_2:62178501-62178520 | Msa0083150:CDS | 25.0% |
| ! | AATTTTTATTGCCTGGAGTT+GGG | + | chr1_2:62176494-62176513 | None:intergenic | 30.0% |
| ! | GAATTGCAATTTTTATTGCC+TGG | + | chr1_2:62176501-62176520 | None:intergenic | 30.0% |
| GACTCATAAGTAGTGTAAAA+TGG | - | chr1_2:62176701-62176720 | Msa0083150:intron | 30.0% | |
| ATAAGTAGTGTAAAATGGAC+AGG | - | chr1_2:62176706-62176725 | Msa0083150:intron | 30.0% | |
| TTGCTTCACTATCAATAAGA+TGG | - | chr1_2:62176852-62176871 | Msa0083150:intron | 30.0% | |
| TGATGTTTGGTTACAAAGTT+TGG | + | chr1_2:62176919-62176938 | None:intergenic | 30.0% | |
| AACTTTGTAACCAAACATCA+TGG | - | chr1_2:62176919-62176938 | Msa0083150:intron | 30.0% | |
| AAACAATGAACCATGATGTT+TGG | + | chr1_2:62176932-62176951 | None:intergenic | 30.0% | |
| AGGAATTATGAAGGTTAGAA+AGG | - | chr1_2:62177006-62177025 | Msa0083150:intron | 30.0% | |
| GGAATTATGAAGGTTAGAAA+GGG | - | chr1_2:62177007-62177026 | Msa0083150:intron | 30.0% | |
| TAATACTGATGAGATCAAAC+AGG | - | chr1_2:62177035-62177054 | Msa0083150:intron | 30.0% | |
| GATATTATAAGGTGTGAGAA+TGG | - | chr1_2:62177483-62177502 | Msa0083150:intron | 30.0% | |
| CATTCACATTCTATTTGAGT+AGG | + | chr1_2:62177540-62177559 | None:intergenic | 30.0% | |
| TTCTATCATAAAGTCACCAT+TGG | + | chr1_2:62177579-62177598 | None:intergenic | 30.0% | |
| ATGCCAACATGAGTATTATT+GGG | - | chr1_2:62177692-62177711 | Msa0083150:intron | 30.0% | |
| ATGATAATAAATACACCCTC+CGG | - | chr1_2:62177797-62177816 | Msa0083150:intron | 30.0% | |
| GATGTATGTGGTCTATTTAA+TGG | - | chr1_2:62177866-62177885 | Msa0083150:intron | 30.0% | |
| CAAATTTCAACTACCTAACA+AGG | + | chr1_2:62177981-62178000 | None:intergenic | 30.0% | |
| CTTGTTAGGTAGTTGAAATT+TGG | - | chr1_2:62177979-62177998 | Msa0083150:intron | 30.0% | |
| ! | CAAATGAATCCTCTTTTCAT+TGG | + | chr1_2:62178059-62178078 | None:intergenic | 30.0% |
| AAAGACAACTAAAGAAGAGT+TGG | - | chr1_2:62178181-62178200 | Msa0083150:intron | 30.0% | |
| !!! | TAGTACCTTATTTTGTAGAG+AGG | - | chr1_2:62178331-62178350 | Msa0083150:intron | 30.0% |
| ! | AATTTTTATTGCCTGGAGTT+GGG | + | chr1_2:62176494-62176513 | None:intergenic | 30.0% |
| ! | GAATTGCAATTTTTATTGCC+TGG | + | chr1_2:62176501-62176520 | None:intergenic | 30.0% |
| GACTCATAAGTAGTGTAAAA+TGG | - | chr1_2:62176701-62176720 | Msa0083150:intron | 30.0% | |
| ATAAGTAGTGTAAAATGGAC+AGG | - | chr1_2:62176706-62176725 | Msa0083150:intron | 30.0% | |
| TTGCTTCACTATCAATAAGA+TGG | - | chr1_2:62176852-62176871 | Msa0083150:intron | 30.0% | |
| TGATGTTTGGTTACAAAGTT+TGG | + | chr1_2:62176919-62176938 | None:intergenic | 30.0% | |
| AACTTTGTAACCAAACATCA+TGG | - | chr1_2:62176919-62176938 | Msa0083150:intron | 30.0% | |
| AAACAATGAACCATGATGTT+TGG | + | chr1_2:62176932-62176951 | None:intergenic | 30.0% | |
| AGGAATTATGAAGGTTAGAA+AGG | - | chr1_2:62177006-62177025 | Msa0083150:intron | 30.0% | |
| GGAATTATGAAGGTTAGAAA+GGG | - | chr1_2:62177007-62177026 | Msa0083150:intron | 30.0% | |
| TAATACTGATGAGATCAAAC+AGG | - | chr1_2:62177035-62177054 | Msa0083150:intron | 30.0% | |
| GATATTATAAGGTGTGAGAA+TGG | - | chr1_2:62177483-62177502 | Msa0083150:intron | 30.0% | |
| CATTCACATTCTATTTGAGT+AGG | + | chr1_2:62177540-62177559 | None:intergenic | 30.0% | |
| TTCTATCATAAAGTCACCAT+TGG | + | chr1_2:62177579-62177598 | None:intergenic | 30.0% | |
| ATGCCAACATGAGTATTATT+GGG | - | chr1_2:62177692-62177711 | Msa0083150:intron | 30.0% | |
| ATGATAATAAATACACCCTC+CGG | - | chr1_2:62177797-62177816 | Msa0083150:intron | 30.0% | |
| GATGTATGTGGTCTATTTAA+TGG | - | chr1_2:62177866-62177885 | Msa0083150:intron | 30.0% | |
| CAAATTTCAACTACCTAACA+AGG | + | chr1_2:62177981-62178000 | None:intergenic | 30.0% | |
| CTTGTTAGGTAGTTGAAATT+TGG | - | chr1_2:62177979-62177998 | Msa0083150:intron | 30.0% | |
| ! | CAAATGAATCCTCTTTTCAT+TGG | + | chr1_2:62178059-62178078 | None:intergenic | 30.0% |
| AAAGACAACTAAAGAAGAGT+TGG | - | chr1_2:62178181-62178200 | Msa0083150:intron | 30.0% | |
| !!! | TAGTACCTTATTTTGTAGAG+AGG | - | chr1_2:62178331-62178350 | Msa0083150:intron | 30.0% |
| GAAACTAAAGTTTGGCGTAA+AGG | - | chr1_2:62176315-62176334 | Msa0083150:CDS | 35.0% | |
| ATACTTTGCTGAGCTATCTT+CGG | + | chr1_2:62176417-62176436 | None:intergenic | 35.0% | |
| ! | CAATTTTTATTGCCTGGAGT+TGG | + | chr1_2:62176495-62176514 | None:intergenic | 35.0% |
| ! | ATTCTTAACGGGTACAATTC+AGG | - | chr1_2:62176768-62176787 | Msa0083150:intron | 35.0% |
| ! | TTCTTAACGGGTACAATTCA+GGG | - | chr1_2:62176769-62176788 | Msa0083150:intron | 35.0% |
| TCTATACCCATCATACCTAT+AGG | + | chr1_2:62176987-62177006 | None:intergenic | 35.0% | |
| !! | TATAGGTATGATGGGTATAG+AGG | - | chr1_2:62176986-62177005 | Msa0083150:intron | 35.0% |
| TGGGTATAGAGGAATTATGA+AGG | - | chr1_2:62176997-62177016 | Msa0083150:intron | 35.0% | |
| AGTTTAAGCATGGATTTCCA+TGG | - | chr1_2:62177169-62177188 | Msa0083150:intron | 35.0% | |
| GTTTAAGCATGGATTTCCAT+GGG | - | chr1_2:62177170-62177189 | Msa0083150:intron | 35.0% | |
| ! | TCTCTGCTATGTGGATTAAA+GGG | - | chr1_2:62177290-62177309 | Msa0083150:intron | 35.0% |
| ATAACCTTCTATGACTGCAT+TGG | - | chr1_2:62177356-62177375 | Msa0083150:intron | 35.0% | |
| ! | AATCAGTGAGTTTTTCCTTG+AGG | - | chr1_2:62177654-62177673 | Msa0083150:intron | 35.0% |
| GATGCCAACATGAGTATTAT+TGG | - | chr1_2:62177691-62177710 | Msa0083150:intron | 35.0% | |
| TGCCAACATGAGTATTATTG+GGG | - | chr1_2:62177693-62177712 | Msa0083150:intron | 35.0% | |
| TTCCCCAATAATACTCATGT+TGG | + | chr1_2:62177698-62177717 | None:intergenic | 35.0% | |
| !!! | ATTGGGGAACACCTTTTTTA+TGG | - | chr1_2:62177709-62177728 | Msa0083150:intron | 35.0% |
| GATAACTTCCAAACAAGTGT+GGG | + | chr1_2:62177738-62177757 | None:intergenic | 35.0% | |
| TGATAACTTCCAAACAAGTG+TGG | + | chr1_2:62177739-62177758 | None:intergenic | 35.0% | |
| CATAGCATCAAAGAAGTCAT+TGG | + | chr1_2:62177767-62177786 | None:intergenic | 35.0% | |
| TGCTTATAATATTGACCGGA+GGG | + | chr1_2:62177815-62177834 | None:intergenic | 35.0% | |
| TTGCTTATAATATTGACCGG+AGG | + | chr1_2:62177816-62177835 | None:intergenic | 35.0% | |
| TTGTTTATAATAGTGACCGG+AGG | - | chr1_2:62177931-62177950 | Msa0083150:intron | 35.0% | |
| TGTTTATAATAGTGACCGGA+GGG | - | chr1_2:62177932-62177951 | Msa0083150:intron | 35.0% | |
| !! | AATGGCATTGATGGTTTGAT+AGG | + | chr1_2:62178036-62178055 | None:intergenic | 35.0% |
| ! | TTTCATTGGAATGGCATTGA+TGG | + | chr1_2:62178045-62178064 | None:intergenic | 35.0% |
| AATGCCATTCCAATGAAAAG+AGG | - | chr1_2:62178047-62178066 | Msa0083150:intron | 35.0% | |
| ! | GAATCCTCTTTTCATTGGAA+TGG | + | chr1_2:62178054-62178073 | None:intergenic | 35.0% |
| !!! | ACCTTATTTTGTAGAGAGGT+CGG | - | chr1_2:62178335-62178354 | Msa0083150:intron | 35.0% |
| ! | TTTTGTTGAAACTCCTCCAT+TGG | + | chr1_2:62178399-62178418 | None:intergenic | 35.0% |
| GAAACTAAAGTTTGGCGTAA+AGG | - | chr1_2:62176315-62176334 | Msa0083150:CDS | 35.0% | |
| ATACTTTGCTGAGCTATCTT+CGG | + | chr1_2:62176417-62176436 | None:intergenic | 35.0% | |
| ! | CAATTTTTATTGCCTGGAGT+TGG | + | chr1_2:62176495-62176514 | None:intergenic | 35.0% |
| ! | ATTCTTAACGGGTACAATTC+AGG | - | chr1_2:62176768-62176787 | Msa0083150:intron | 35.0% |
| ! | TTCTTAACGGGTACAATTCA+GGG | - | chr1_2:62176769-62176788 | Msa0083150:intron | 35.0% |
| TCTATACCCATCATACCTAT+AGG | + | chr1_2:62176987-62177006 | None:intergenic | 35.0% | |
| !! | TATAGGTATGATGGGTATAG+AGG | - | chr1_2:62176986-62177005 | Msa0083150:intron | 35.0% |
| TGGGTATAGAGGAATTATGA+AGG | - | chr1_2:62176997-62177016 | Msa0083150:intron | 35.0% | |
| AGTTTAAGCATGGATTTCCA+TGG | - | chr1_2:62177169-62177188 | Msa0083150:intron | 35.0% | |
| GTTTAAGCATGGATTTCCAT+GGG | - | chr1_2:62177170-62177189 | Msa0083150:intron | 35.0% | |
| ! | TCTCTGCTATGTGGATTAAA+GGG | - | chr1_2:62177290-62177309 | Msa0083150:intron | 35.0% |
| ATAACCTTCTATGACTGCAT+TGG | - | chr1_2:62177356-62177375 | Msa0083150:intron | 35.0% | |
| ! | AATCAGTGAGTTTTTCCTTG+AGG | - | chr1_2:62177654-62177673 | Msa0083150:intron | 35.0% |
| GATGCCAACATGAGTATTAT+TGG | - | chr1_2:62177691-62177710 | Msa0083150:intron | 35.0% | |
| TGCCAACATGAGTATTATTG+GGG | - | chr1_2:62177693-62177712 | Msa0083150:intron | 35.0% | |
| TTCCCCAATAATACTCATGT+TGG | + | chr1_2:62177698-62177717 | None:intergenic | 35.0% | |
| !!! | ATTGGGGAACACCTTTTTTA+TGG | - | chr1_2:62177709-62177728 | Msa0083150:intron | 35.0% |
| GATAACTTCCAAACAAGTGT+GGG | + | chr1_2:62177738-62177757 | None:intergenic | 35.0% | |
| TGATAACTTCCAAACAAGTG+TGG | + | chr1_2:62177739-62177758 | None:intergenic | 35.0% | |
| CATAGCATCAAAGAAGTCAT+TGG | + | chr1_2:62177767-62177786 | None:intergenic | 35.0% | |
| TGCTTATAATATTGACCGGA+GGG | + | chr1_2:62177815-62177834 | None:intergenic | 35.0% | |
| TTGCTTATAATATTGACCGG+AGG | + | chr1_2:62177816-62177835 | None:intergenic | 35.0% | |
| TTGTTTATAATAGTGACCGG+AGG | - | chr1_2:62177931-62177950 | Msa0083150:intron | 35.0% | |
| TGTTTATAATAGTGACCGGA+GGG | - | chr1_2:62177932-62177951 | Msa0083150:intron | 35.0% | |
| !! | AATGGCATTGATGGTTTGAT+AGG | + | chr1_2:62178036-62178055 | None:intergenic | 35.0% |
| ! | TTTCATTGGAATGGCATTGA+TGG | + | chr1_2:62178045-62178064 | None:intergenic | 35.0% |
| AATGCCATTCCAATGAAAAG+AGG | - | chr1_2:62178047-62178066 | Msa0083150:intron | 35.0% | |
| ! | GAATCCTCTTTTCATTGGAA+TGG | + | chr1_2:62178054-62178073 | None:intergenic | 35.0% |
| !!! | ACCTTATTTTGTAGAGAGGT+CGG | - | chr1_2:62178335-62178354 | Msa0083150:intron | 35.0% |
| ! | TTTTGTTGAAACTCCTCCAT+TGG | + | chr1_2:62178399-62178418 | None:intergenic | 35.0% |
| !! | CACAAGATTGGCTTCTCATA+TGG | + | chr1_2:62176342-62176361 | None:intergenic | 40.0% |
| ATAGTCTTCAAGGGTTCCTT+TGG | + | chr1_2:62176391-62176410 | None:intergenic | 40.0% | |
| TACTTTGCTGAGCTATCTTC+GGG | + | chr1_2:62176416-62176435 | None:intergenic | 40.0% | |
| GAGTTGGGTTTGAAAGCTTT+GGG | + | chr1_2:62176479-62176498 | None:intergenic | 40.0% | |
| ! | TCTTAACGGGTACAATTCAG+GGG | - | chr1_2:62176770-62176789 | Msa0083150:intron | 40.0% |
| CATTGTCATGTTGAGTACCT+GGG | + | chr1_2:62176958-62176977 | None:intergenic | 40.0% | |
| CAGGTACTCAACATGACAAT+GGG | - | chr1_2:62176957-62176976 | Msa0083150:intron | 40.0% | |
| ! | ATGACAATGGGTTCTCCTAT+AGG | - | chr1_2:62176969-62176988 | Msa0083150:intron | 40.0% |
| GGTTCTCCTATAGGTATGAT+GGG | - | chr1_2:62176978-62176997 | Msa0083150:intron | 40.0% | |
| ATGTGCAATCCATTGTGGTT+GGG | - | chr1_2:62177138-62177157 | Msa0083150:intron | 40.0% | |
| !! | AAAGTTTTCTACGGGTTGCA+TGG | + | chr1_2:62177218-62177237 | None:intergenic | 40.0% |
| ! | ACGCTGCTAAAGTTTTCTAC+GGG | + | chr1_2:62177226-62177245 | None:intergenic | 40.0% |
| ! | CACGCTGCTAAAGTTTTCTA+CGG | + | chr1_2:62177227-62177246 | None:intergenic | 40.0% |
| ! | GTCTCTGCTATGTGGATTAA+AGG | - | chr1_2:62177289-62177308 | Msa0083150:intron | 40.0% |
| ACAACCAATGCAGTCATAGA+AGG | + | chr1_2:62177363-62177382 | None:intergenic | 40.0% | |
| !! | TTCTATGACTGCATTGGTTG+TGG | - | chr1_2:62177362-62177381 | Msa0083150:intron | 40.0% |
| ACCATATCAACGTCTTCCAA+TGG | - | chr1_2:62177560-62177579 | Msa0083150:intron | 40.0% | |
| ACCATTGGAAGACGTTGATA+TGG | + | chr1_2:62177564-62177583 | None:intergenic | 40.0% | |
| AGTGTGGGACACCATAAAAA+AGG | + | chr1_2:62177723-62177742 | None:intergenic | 40.0% | |
| ACTATTCTTTGTACACCCTC+CGG | + | chr1_2:62177950-62177969 | None:intergenic | 40.0% | |
| AACTCCATAGTCTTCATGTC+TGG | - | chr1_2:62178140-62178159 | Msa0083150:intron | 40.0% | |
| ATCTCCAGACATGAAGACTA+TGG | + | chr1_2:62178147-62178166 | None:intergenic | 40.0% | |
| ! | TCTTTAAAAGAGTGCAACCG+AGG | + | chr1_2:62178527-62178546 | None:intergenic | 40.0% |
| !! | CACAAGATTGGCTTCTCATA+TGG | + | chr1_2:62176342-62176361 | None:intergenic | 40.0% |
| ATAGTCTTCAAGGGTTCCTT+TGG | + | chr1_2:62176391-62176410 | None:intergenic | 40.0% | |
| TACTTTGCTGAGCTATCTTC+GGG | + | chr1_2:62176416-62176435 | None:intergenic | 40.0% | |
| GAGTTGGGTTTGAAAGCTTT+GGG | + | chr1_2:62176479-62176498 | None:intergenic | 40.0% | |
| ! | TCTTAACGGGTACAATTCAG+GGG | - | chr1_2:62176770-62176789 | Msa0083150:intron | 40.0% |
| CATTGTCATGTTGAGTACCT+GGG | + | chr1_2:62176958-62176977 | None:intergenic | 40.0% | |
| CAGGTACTCAACATGACAAT+GGG | - | chr1_2:62176957-62176976 | Msa0083150:intron | 40.0% | |
| ! | ATGACAATGGGTTCTCCTAT+AGG | - | chr1_2:62176969-62176988 | Msa0083150:intron | 40.0% |
| GGTTCTCCTATAGGTATGAT+GGG | - | chr1_2:62176978-62176997 | Msa0083150:intron | 40.0% | |
| ATGTGCAATCCATTGTGGTT+GGG | - | chr1_2:62177138-62177157 | Msa0083150:intron | 40.0% | |
| !! | AAAGTTTTCTACGGGTTGCA+TGG | + | chr1_2:62177218-62177237 | None:intergenic | 40.0% |
| ! | ACGCTGCTAAAGTTTTCTAC+GGG | + | chr1_2:62177226-62177245 | None:intergenic | 40.0% |
| ! | CACGCTGCTAAAGTTTTCTA+CGG | + | chr1_2:62177227-62177246 | None:intergenic | 40.0% |
| ! | GTCTCTGCTATGTGGATTAA+AGG | - | chr1_2:62177289-62177308 | Msa0083150:intron | 40.0% |
| ACAACCAATGCAGTCATAGA+AGG | + | chr1_2:62177363-62177382 | None:intergenic | 40.0% | |
| !! | TTCTATGACTGCATTGGTTG+TGG | - | chr1_2:62177362-62177381 | Msa0083150:intron | 40.0% |
| ACCATATCAACGTCTTCCAA+TGG | - | chr1_2:62177560-62177579 | Msa0083150:intron | 40.0% | |
| ACCATTGGAAGACGTTGATA+TGG | + | chr1_2:62177564-62177583 | None:intergenic | 40.0% | |
| AGTGTGGGACACCATAAAAA+AGG | + | chr1_2:62177723-62177742 | None:intergenic | 40.0% | |
| ACTATTCTTTGTACACCCTC+CGG | + | chr1_2:62177950-62177969 | None:intergenic | 40.0% | |
| AACTCCATAGTCTTCATGTC+TGG | - | chr1_2:62178140-62178159 | Msa0083150:intron | 40.0% | |
| ATCTCCAGACATGAAGACTA+TGG | + | chr1_2:62178147-62178166 | None:intergenic | 40.0% | |
| ! | TCTTTAAAAGAGTGCAACCG+AGG | + | chr1_2:62178527-62178546 | None:intergenic | 40.0% |
| GGATTGCATTTCAAGGCCAA+AGG | - | chr1_2:62176372-62176391 | Msa0083150:CDS | 45.0% | |
| CTTCGGGAGATAGTCTTCAA+GGG | + | chr1_2:62176400-62176419 | None:intergenic | 45.0% | |
| TCTTCGGGAGATAGTCTTCA+AGG | + | chr1_2:62176401-62176420 | None:intergenic | 45.0% | |
| GGAGTTGGGTTTGAAAGCTT+TGG | + | chr1_2:62176480-62176499 | None:intergenic | 45.0% | |
| AAGCTTTCAAACCCAACTCC+AGG | - | chr1_2:62176480-62176499 | Msa0083150:CDS | 45.0% | |
| ATGGTTCATTGTTTGTGCCC+AGG | - | chr1_2:62176938-62176957 | Msa0083150:intron | 45.0% | |
| CCATTGTCATGTTGAGTACC+TGG | + | chr1_2:62176959-62176978 | None:intergenic | 45.0% | |
| CCAGGTACTCAACATGACAA+TGG | - | chr1_2:62176956-62176975 | Msa0083150:intron | 45.0% | |
| GGGTTCTCCTATAGGTATGA+TGG | - | chr1_2:62176977-62176996 | Msa0083150:intron | 45.0% | |
| !! | CCACAATGGATTGCACATCA+TGG | + | chr1_2:62177136-62177155 | None:intergenic | 45.0% |
| CCATGATGTGCAATCCATTG+TGG | - | chr1_2:62177133-62177152 | Msa0083150:intron | 45.0% | |
| GATGTGCAATCCATTGTGGT+TGG | - | chr1_2:62177137-62177156 | Msa0083150:intron | 45.0% | |
| GGCATGGTGTAGTTTAAGCA+TGG | - | chr1_2:62177159-62177178 | Msa0083150:intron | 45.0% | |
| GGTTACCCAGAATGTCCAAA+CGG | + | chr1_2:62177197-62177216 | None:intergenic | 45.0% | |
| TGAGAGTTGTCTCTGCTATG+TGG | - | chr1_2:62177281-62177300 | Msa0083150:intron | 45.0% | |
| ! | GTTTTTCCTTGAGGTCCTTG+AGG | - | chr1_2:62177663-62177682 | Msa0083150:intron | 45.0% |
| TATGGTGTCCCACACTTGTT+TGG | - | chr1_2:62177727-62177746 | Msa0083150:intron | 45.0% | |
| !! | GGCATTGATGGTTTGATAGG+TGG | + | chr1_2:62178033-62178052 | None:intergenic | 45.0% |
| GCCGACCTCTCTACAAAATA+AGG | + | chr1_2:62178339-62178358 | None:intergenic | 45.0% | |
| !! | ATTAGTGTCGGCCTCATAGT+CGG | + | chr1_2:62178363-62178382 | None:intergenic | 45.0% |
| GTCAGTGTCTCCATTAGTGT+CGG | + | chr1_2:62178375-62178394 | None:intergenic | 45.0% | |
| AATGGAGACACTGACACCAA+TGG | - | chr1_2:62178380-62178399 | Msa0083150:intron | 45.0% | |
| GGATTGCATTTCAAGGCCAA+AGG | - | chr1_2:62176372-62176391 | Msa0083150:CDS | 45.0% | |
| CTTCGGGAGATAGTCTTCAA+GGG | + | chr1_2:62176400-62176419 | None:intergenic | 45.0% | |
| TCTTCGGGAGATAGTCTTCA+AGG | + | chr1_2:62176401-62176420 | None:intergenic | 45.0% | |
| GGAGTTGGGTTTGAAAGCTT+TGG | + | chr1_2:62176480-62176499 | None:intergenic | 45.0% | |
| AAGCTTTCAAACCCAACTCC+AGG | - | chr1_2:62176480-62176499 | Msa0083150:CDS | 45.0% | |
| ATGGTTCATTGTTTGTGCCC+AGG | - | chr1_2:62176938-62176957 | Msa0083150:intron | 45.0% | |
| CCATTGTCATGTTGAGTACC+TGG | + | chr1_2:62176959-62176978 | None:intergenic | 45.0% | |
| CCAGGTACTCAACATGACAA+TGG | - | chr1_2:62176956-62176975 | Msa0083150:intron | 45.0% | |
| GGGTTCTCCTATAGGTATGA+TGG | - | chr1_2:62176977-62176996 | Msa0083150:intron | 45.0% | |
| !! | CCACAATGGATTGCACATCA+TGG | + | chr1_2:62177136-62177155 | None:intergenic | 45.0% |
| CCATGATGTGCAATCCATTG+TGG | - | chr1_2:62177133-62177152 | Msa0083150:intron | 45.0% | |
| GATGTGCAATCCATTGTGGT+TGG | - | chr1_2:62177137-62177156 | Msa0083150:intron | 45.0% | |
| GGCATGGTGTAGTTTAAGCA+TGG | - | chr1_2:62177159-62177178 | Msa0083150:intron | 45.0% | |
| GGTTACCCAGAATGTCCAAA+CGG | + | chr1_2:62177197-62177216 | None:intergenic | 45.0% | |
| TGAGAGTTGTCTCTGCTATG+TGG | - | chr1_2:62177281-62177300 | Msa0083150:intron | 45.0% | |
| ! | GTTTTTCCTTGAGGTCCTTG+AGG | - | chr1_2:62177663-62177682 | Msa0083150:intron | 45.0% |
| TATGGTGTCCCACACTTGTT+TGG | - | chr1_2:62177727-62177746 | Msa0083150:intron | 45.0% | |
| !! | GGCATTGATGGTTTGATAGG+TGG | + | chr1_2:62178033-62178052 | None:intergenic | 45.0% |
| GCCGACCTCTCTACAAAATA+AGG | + | chr1_2:62178339-62178358 | None:intergenic | 45.0% | |
| !! | ATTAGTGTCGGCCTCATAGT+CGG | + | chr1_2:62178363-62178382 | None:intergenic | 45.0% |
| GTCAGTGTCTCCATTAGTGT+CGG | + | chr1_2:62178375-62178394 | None:intergenic | 45.0% | |
| AATGGAGACACTGACACCAA+TGG | - | chr1_2:62178380-62178399 | Msa0083150:intron | 45.0% | |
| CCACAGGCGTTACACAAGAT+TGG | + | chr1_2:62176354-62176373 | None:intergenic | 50.0% | |
| CCAATCTTGTGTAACGCCTG+TGG | - | chr1_2:62176351-62176370 | Msa0083150:CDS | 50.0% | |
| ! | CGCCTGTGGATTGCATTTCA+AGG | - | chr1_2:62176365-62176384 | Msa0083150:CDS | 50.0% |
| GGCCTTGAAATGCAATCCAC+AGG | + | chr1_2:62176370-62176389 | None:intergenic | 50.0% | |
| CAATCCATTGTGGTTGGGCA+TGG | - | chr1_2:62177143-62177162 | Msa0083150:intron | 50.0% | |
| TACACCATGCCCAACCACAA+TGG | + | chr1_2:62177150-62177169 | None:intergenic | 50.0% | |
| TGGATTTCCATGGGTCCGTT+TGG | - | chr1_2:62177179-62177198 | Msa0083150:intron | 50.0% | |
| AGAATGTCCAAACGGACCCA+TGG | + | chr1_2:62177189-62177208 | None:intergenic | 50.0% | |
| ATGGGTCCGTTTGGACATTC+TGG | - | chr1_2:62177188-62177207 | Msa0083150:intron | 50.0% | |
| TGGGTCCGTTTGGACATTCT+GGG | - | chr1_2:62177189-62177208 | Msa0083150:intron | 50.0% | |
| GACTATGAGGCCGACACTAA+TGG | - | chr1_2:62178362-62178381 | Msa0083150:intron | 50.0% | |
| CCAAGTAATGAGATCGGCCT+CGG | - | chr1_2:62178507-62178526 | Msa0083150:CDS | 50.0% | |
| CCACAGGCGTTACACAAGAT+TGG | + | chr1_2:62176354-62176373 | None:intergenic | 50.0% | |
| CCAATCTTGTGTAACGCCTG+TGG | - | chr1_2:62176351-62176370 | Msa0083150:CDS | 50.0% | |
| ! | CGCCTGTGGATTGCATTTCA+AGG | - | chr1_2:62176365-62176384 | Msa0083150:CDS | 50.0% |
| GGCCTTGAAATGCAATCCAC+AGG | + | chr1_2:62176370-62176389 | None:intergenic | 50.0% | |
| CAATCCATTGTGGTTGGGCA+TGG | - | chr1_2:62177143-62177162 | Msa0083150:intron | 50.0% | |
| TACACCATGCCCAACCACAA+TGG | + | chr1_2:62177150-62177169 | None:intergenic | 50.0% | |
| TGGATTTCCATGGGTCCGTT+TGG | - | chr1_2:62177179-62177198 | Msa0083150:intron | 50.0% | |
| AGAATGTCCAAACGGACCCA+TGG | + | chr1_2:62177189-62177208 | None:intergenic | 50.0% | |
| ATGGGTCCGTTTGGACATTC+TGG | - | chr1_2:62177188-62177207 | Msa0083150:intron | 50.0% | |
| TGGGTCCGTTTGGACATTCT+GGG | - | chr1_2:62177189-62177208 | Msa0083150:intron | 50.0% | |
| GACTATGAGGCCGACACTAA+TGG | - | chr1_2:62178362-62178381 | Msa0083150:intron | 50.0% | |
| CCAAGTAATGAGATCGGCCT+CGG | - | chr1_2:62178507-62178526 | Msa0083150:CDS | 50.0% | |
| TGTTGGCATCACGCACCTCA+AGG | + | chr1_2:62177681-62177700 | None:intergenic | 55.0% | |
| GGAGACACTGACACCAATGG+AGG | - | chr1_2:62178383-62178402 | Msa0083150:intron | 55.0% | |
| CCGAGGCCGATCTCATTACT+TGG | + | chr1_2:62178510-62178529 | None:intergenic | 55.0% | |
| TGTTGGCATCACGCACCTCA+AGG | + | chr1_2:62177681-62177700 | None:intergenic | 55.0% | |
| GGAGACACTGACACCAATGG+AGG | - | chr1_2:62178383-62178402 | Msa0083150:intron | 55.0% | |
| CCGAGGCCGATCTCATTACT+TGG | + | chr1_2:62178510-62178529 | None:intergenic | 55.0% | |
| CACGCACCTCAAGGACCTCA+AGG | + | chr1_2:62177672-62177691 | None:intergenic | 60.0% | |
| !! | AGAGGTCGGCACCGACTATG+AGG | - | chr1_2:62178349-62178368 | Msa0083150:intron | 60.0% |
| CACGCACCTCAAGGACCTCA+AGG | + | chr1_2:62177672-62177691 | None:intergenic | 60.0% | |
| !! | AGAGGTCGGCACCGACTATG+AGG | - | chr1_2:62178349-62178368 | Msa0083150:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 62176303 | 62178587 | 62176303 | ID=Msa0083150;Name=Msa0083150 |
| chr1_2 | mRNA | 62176303 | 62178587 | 62176303 | ID=Msa0083150-mRNA-1;Parent=Msa0083150;Name=Msa0083150-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0|0|1|0|0.5|2|0|135 |
| chr1_2 | exon | 62178419 | 62178587 | 62178419 | ID=Msa0083150-mRNA-1:exon:20650;Parent=Msa0083150-mRNA-1 |
| chr1_2 | exon | 62176303 | 62176541 | 62176303 | ID=Msa0083150-mRNA-1:exon:20649;Parent=Msa0083150-mRNA-1 |
| chr1_2 | CDS | 62178419 | 62178587 | 62178419 | ID=Msa0083150-mRNA-1:cds;Parent=Msa0083150-mRNA-1 |
| chr1_2 | CDS | 62176303 | 62176541 | 62176303 | ID=Msa0083150-mRNA-1:cds;Parent=Msa0083150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
