AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0083580

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0083580 MtrunA17_Chr1g0197361 89.034 611 45 4 1 611 1 589 0.0 1105
Msa0083580 MtrunA17_Chr3g0092671 63.279 610 149 11 5 611 2 539 0.0 734
Msa0083580 MtrunA17_Chr1g0197351 56.436 202 75 4 9 206 43 235 6.10e-66 223
Msa0083580 MtrunA17_Chr8g0364791 52.486 181 76 2 10 190 8 178 9.60e-65 219
Msa0083580 MtrunA17_Chr3g0130101 50.490 204 85 4 10 208 9 201 2.55e-63 213
Msa0083580 MtrunA17_Chr8g0384201 49.727 183 78 3 10 190 8 178 3.10e-60 208
Msa0083580 MtrunA17_Chr2g0309891 53.476 187 77 4 10 195 8 185 9.20e-59 200
Msa0083580 MtrunA17_Chr1g0201021 54.749 179 71 3 10 188 21 189 4.82e-57 201
Msa0083580 MtrunA17_Chr3g0109821 55.491 173 63 4 10 179 8 169 3.98e-53 192
Msa0083580 MtrunA17_Chr5g0433781 50.777 193 78 5 10 195 8 190 1.93e-51 187
Msa0083580 MtrunA17_Chr6g0481091 53.086 162 64 3 10 170 8 158 2.51e-51 177
Msa0083580 MtrunA17_Chr4g0060931 47.423 194 79 6 10 197 19 195 2.85e-47 169
Msa0083580 MtrunA17_Chr3g0128111 50.314 159 69 2 11 169 45 193 4.99e-47 165
Msa0083580 MtrunA17_Chr5g0400461 48.795 166 65 3 10 168 8 160 9.07e-47 167
Msa0083580 MtrunA17_Chr3g0091921 43.458 214 108 6 10 222 18 219 9.18e-47 166
Msa0083580 MtrunA17_Chr6g0484441 50.000 160 66 3 10 169 7 152 1.91e-46 166
Msa0083580 MtrunA17_Chr3g0139331 52.071 169 61 5 10 174 13 165 2.12e-46 167
Msa0083580 MtrunA17_Chr5g0428991 50.000 158 69 2 11 168 28 175 7.36e-46 171
Msa0083580 MtrunA17_Chr1g0147421 47.904 167 72 3 10 174 29 182 1.51e-45 165
Msa0083580 MtrunA17_Chr4g0054791 50.292 171 70 6 1 168 1 159 1.71e-45 164
Msa0083580 MtrunA17_Chr3g0128151 50.314 159 69 2 11 169 25 173 4.15e-45 169
Msa0083580 MtrunA17_Chr6g0453451 43.000 200 98 6 10 209 22 205 4.86e-44 159
Msa0083580 MtrunA17_Chr7g0217721 41.126 231 119 6 11 227 22 249 5.90e-44 160
Msa0083580 MtrunA17_Chr4g0018391 46.875 160 72 4 10 168 9 156 1.23e-43 159
Msa0083580 MtrunA17_Chr2g0316971 48.235 170 66 6 10 172 25 179 1.37e-43 160
Msa0083580 MtrunA17_Chr4g0042561 46.061 165 77 4 10 172 11 165 2.20e-43 156
Msa0083580 MtrunA17_Chr4g0056541 44.444 171 82 4 10 179 9 167 2.94e-43 159
Msa0083580 MtrunA17_Chr3g0124761 48.171 164 71 6 10 171 9 160 4.62e-43 156
Msa0083580 MtrunA17_Chr8g0346001 45.000 160 86 2 10 168 17 175 5.95e-43 159
Msa0083580 MtrunA17_Chr4g0017921 46.250 160 72 3 10 168 10 156 6.32e-43 157
Msa0083580 MtrunA17_Chr2g0318081 46.061 165 77 3 10 174 18 170 7.28e-43 157
Msa0083580 MtrunA17_Chr2g0309331 43.333 180 83 5 10 187 12 174 4.71e-42 155
Msa0083580 MtrunA17_Chr7g0252971 38.208 212 107 6 10 207 10 211 6.80e-42 154
Msa0083580 MtrunA17_Chr5g0398971 46.584 161 73 5 10 168 9 158 1.00e-41 154
Msa0083580 MtrunA17_Chr7g0217711 54.135 133 58 2 11 143 22 151 1.56e-41 148
Msa0083580 MtrunA17_Chr8g0361731 40.000 185 104 4 10 190 16 197 1.66e-41 155
Msa0083580 MtrunA17_Chr8g0384721 45.087 173 81 6 1 171 1 161 2.17e-41 151
Msa0083580 MtrunA17_Chr8g0372121 38.235 204 111 6 10 210 8 199 2.36e-41 152
Msa0083580 MtrunA17_Chr5g0417791 46.541 159 77 4 10 168 5 155 2.87e-41 150
Msa0083580 MtrunA17_Chr5g0405211 44.375 160 76 3 10 168 10 157 4.72e-41 152
Msa0083580 MtrunA17_Chr2g0318101 45.181 166 84 4 10 171 17 179 6.41e-41 152
Msa0083580 MtrunA17_Chr6g0461661 48.466 163 68 6 11 169 21 171 1.69e-40 151
Msa0083580 MtrunA17_Chr7g0263931 44.910 167 76 6 10 171 13 168 2.91e-40 149
Msa0083580 MtrunA17_Chr1g0200561 43.452 168 82 4 10 176 21 176 3.44e-40 150
Msa0083580 MtrunA17_Chr7g0214071 43.386 189 87 6 10 195 17 188 8.25e-40 146
Msa0083580 MtrunA17_Chr2g0311651 44.444 171 87 4 10 174 24 192 9.65e-40 147
Msa0083580 MtrunA17_Chr7g0253011 48.193 166 68 6 10 169 19 172 1.79e-39 149
Msa0083580 MtrunA17_Chr5g0417001 43.114 167 83 5 10 171 16 175 2.83e-39 148
Msa0083580 MtrunA17_Chr8g0359921 44.242 165 82 3 10 174 16 170 3.17e-39 147
Msa0083580 MtrunA17_Chr4g0047841 43.820 178 81 4 10 171 17 191 3.37e-39 147
Msa0083580 MtrunA17_Chr2g0311661 43.860 171 88 4 10 174 23 191 8.86e-39 144
Msa0083580 MtrunA17_Chr3g0130731 45.732 164 75 6 10 171 9 160 1.19e-38 144
Msa0083580 MtrunA17_Chr2g0312321 47.205 161 70 5 10 169 13 159 1.24e-38 144
Msa0083580 MtrunA17_Chr6g0453131 40.223 179 101 4 10 186 17 191 1.46e-38 146
Msa0083580 MtrunA17_Chr2g0326361 40.722 194 90 7 10 198 16 189 3.46e-38 144
Msa0083580 MtrunA17_Chr1g0183741 45.342 161 70 4 10 168 12 156 5.84e-38 141
Msa0083580 MtrunA17_Chr5g0442771 42.262 168 91 3 10 174 20 184 2.21e-37 141
Msa0083580 MtrunA17_Chr8g0345671 55.556 126 53 2 11 134 14 138 3.41e-37 142
Msa0083580 MtrunA17_Chr7g0261411 45.283 159 69 4 10 166 12 154 3.50e-37 140
Msa0083580 MtrunA17_Chr4g0076731 39.506 162 83 4 10 170 56 203 7.98e-37 142
Msa0083580 MtrunA17_Chr8g0345691 46.203 158 68 4 11 166 15 157 1.04e-36 142
Msa0083580 MtrunA17_Chr3g0144271 49.612 129 61 2 10 136 25 151 1.99e-36 141
Msa0083580 MtrunA17_Chr4g0038751 40.606 165 78 4 10 171 17 164 4.27e-35 134
Msa0083580 MtrunA17_Chr8g0345711 41.975 162 85 5 11 166 15 173 9.34e-34 126
Msa0083580 MtrunA17_Chr8g0345731 45.736 129 64 3 11 134 27 154 6.91e-31 118
Msa0083580 MtrunA17_Chr2g0321741 42.029 138 62 3 28 165 12 131 1.83e-30 122
Msa0083580 MtrunA17_Chr3g0131911 39.655 174 87 6 10 176 16 178 3.69e-30 119
Msa0083580 MtrunA17_Chr8g0385991 38.235 170 92 5 10 176 16 175 1.13e-29 117
Msa0083580 MtrunA17_Chr3g0113001 38.202 178 101 3 57 232 11 181 1.32e-28 115
Msa0083580 MtrunA17_Chr8g0345721 39.355 155 62 3 11 134 38 191 2.89e-28 112
Msa0083580 MtrunA17_Chr4g0026141 39.521 167 88 5 10 171 7 165 3.64e-28 114
Msa0083580 MtrunA17_Chr8g0345701 44.286 140 59 4 11 134 10 146 4.68e-28 110
Msa0083580 MtrunA17_Chr8g0345741 43.697 119 64 2 19 135 2 119 2.73e-27 107
Msa0083580 MtrunA17_Chr3g0113031 39.752 161 89 4 74 232 3 157 1.53e-26 109
Msa0083580 MtrunA17_Chr2g0321631 33.133 166 101 4 10 171 6 165 7.50e-26 106
Msa0083580 MtrunA17_Chr7g0266701 35.714 168 92 7 10 169 6 165 1.45e-25 106
Msa0083580 MtrunA17_Chr4g0050701 32.919 161 92 5 10 168 13 159 2.11e-24 100
Msa0083580 MtrunA17_Chr1g0194791 73.214 56 15 0 2 57 40 95 4.37e-24 97.1
Msa0083580 MtrunA17_Chr7g0243371 50.685 73 34 1 66 136 19 91 1.59e-20 87.4
Msa0083580 MtrunA17_Chr3g0130321 29.814 161 101 5 10 167 9 160 7.86e-16 76.6
Msa0083580 MtrunA17_Chr7g0251651 32.283 127 77 5 11 134 21 141 8.81e-15 73.2
Msa0083580 MtrunA17_Chr7g0251661 28.571 126 83 4 11 134 13 133 5.45e-13 67.0
Msa0083580 MtrunA17_Chr7g0274971 28.780 205 102 11 14 197 11 192 9.05e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0083580 AT5G04410.1 63.285 207 66 2 2 208 3 199 4.68e-85 276
Msa0083580 AT5G04410.1 29.831 295 168 12 315 603 299 560 2.22e-18 89.4
Msa0083580 AT3G10500.1 65.574 183 53 2 2 184 3 175 2.18e-79 261
Msa0083580 AT3G10500.1 35.758 165 71 7 449 603 403 542 5.87e-14 75.5
Msa0083580 AT3G10480.1 56.701 194 74 3 4 197 23 206 7.31e-70 233
Msa0083580 AT3G10480.2 56.701 194 73 3 4 197 23 205 1.25e-69 233
Msa0083580 AT3G10490.1 57.143 189 71 3 9 197 28 206 2.74e-69 224
Msa0083580 AT3G10490.2 60.556 180 61 4 9 188 28 197 5.55e-68 228
Msa0083580 AT3G10480.3 49.099 222 70 4 9 197 28 239 4.37e-63 217
Msa0083580 AT5G09330.5 48.416 221 97 5 9 229 7 210 3.49e-62 214
Msa0083580 AT5G09330.2 48.416 221 97 5 9 229 7 210 3.49e-62 214
Msa0083580 AT5G09330.4 48.416 221 97 5 9 229 7 210 3.49e-62 214
Msa0083580 AT5G09330.3 48.416 221 97 5 9 229 7 210 3.49e-62 214
Msa0083580 AT5G09330.1 48.416 221 97 5 9 229 7 210 3.49e-62 214
Msa0083580 AT5G64060.1 51.075 186 81 2 9 194 7 182 7.18e-59 201
Msa0083580 AT1G34190.1 45.022 231 94 4 7 237 15 212 3.18e-58 205
Msa0083580 AT1G34180.3 44.643 224 112 3 7 228 15 228 1.01e-57 201
Msa0083580 AT1G34180.1 50.549 182 80 2 7 188 15 186 8.08e-57 201
Msa0083580 AT1G34180.4 42.373 236 112 4 7 228 15 240 2.18e-54 192
Msa0083580 AT1G34180.2 47.423 194 80 3 7 188 15 198 1.53e-53 192
Msa0083580 AT1G65910.1 54.386 171 66 3 10 179 8 167 7.31e-53 192
Msa0083580 AT1G32870.2 53.714 175 71 3 10 184 12 176 3.08e-52 187
Msa0083580 AT1G32870.1 53.714 175 71 3 10 184 12 176 3.09e-52 188
Msa0083580 AT1G32870.3 53.714 175 71 3 10 184 48 212 8.05e-52 187
Msa0083580 AT3G17730.1 52.174 161 67 2 10 170 8 158 7.45e-51 176
Msa0083580 AT3G03200.1 54.088 159 64 2 10 168 8 157 7.81e-51 183
Msa0083580 AT5G46590.1 51.553 161 68 3 10 169 8 159 2.55e-50 176
Msa0083580 AT5G17260.1 51.572 159 68 2 10 168 8 157 4.17e-49 178
Msa0083580 AT5G46590.2 53.901 141 63 2 10 149 8 147 5.22e-48 169
Msa0083580 AT1G54330.1 51.205 166 68 2 10 175 8 160 1.54e-47 169
Msa0083580 AT4G17980.1 52.761 163 63 5 10 168 8 160 7.20e-47 166
Msa0083580 AT4G17980.2 52.439 164 64 5 10 169 8 161 1.06e-46 166
Msa0083580 AT5G61430.1 49.701 167 70 4 10 174 18 172 1.09e-46 167
Msa0083580 AT1G33060.2 50.633 158 68 2 11 168 27 174 2.42e-45 171
Msa0083580 AT1G71930.2 46.875 160 72 3 10 168 11 158 2.43e-45 164
Msa0083580 AT1G71930.1 46.875 160 72 3 10 168 11 158 2.43e-45 164
Msa0083580 AT1G33060.1 50.633 158 68 2 11 168 27 174 2.78e-45 171
Msa0083580 AT3G18400.1 47.879 165 73 3 10 174 7 158 4.69e-45 162
Msa0083580 AT4G35580.1 51.266 158 67 2 11 168 12 159 5.02e-45 167
Msa0083580 AT4G35580.3 51.266 158 67 2 11 168 12 159 5.47e-45 168
Msa0083580 AT4G35580.2 51.266 158 67 2 11 168 12 159 5.72e-45 168
Msa0083580 AT2G46770.1 45.122 164 84 3 10 168 18 180 5.92e-45 164
Msa0083580 AT5G07680.2 48.485 165 75 4 10 174 5 159 9.03e-45 162
Msa0083580 AT3G61910.1 44.848 165 85 3 10 169 13 176 9.39e-45 162
Msa0083580 AT5G39610.1 48.485 165 75 3 10 174 22 176 1.18e-44 160
Msa0083580 AT5G07680.1 48.485 165 75 4 10 174 19 173 1.18e-44 162
Msa0083580 AT3G49530.2 47.799 159 72 3 11 168 16 164 4.74e-44 162
Msa0083580 AT3G49530.1 47.799 159 72 3 11 168 16 164 1.39e-43 162
Msa0083580 AT3G15170.1 49.398 166 66 5 10 170 22 174 1.66e-43 158
Msa0083580 AT1G69490.1 45.665 173 82 4 10 180 11 173 2.11e-43 157
Msa0083580 AT2G24430.2 47.305 167 73 4 10 174 18 171 2.54e-43 158
Msa0083580 AT2G24430.1 47.305 167 73 4 10 174 18 171 2.54e-43 158
Msa0083580 AT2G18060.3 42.778 180 89 4 10 187 11 178 3.36e-43 159
Msa0083580 AT2G18060.1 42.778 180 89 4 10 187 11 178 3.36e-43 159
Msa0083580 AT4G10350.1 46.250 160 75 3 10 168 11 160 6.18e-43 157
Msa0083580 AT1G12260.2 47.500 160 71 4 10 168 9 156 6.52e-43 157
Msa0083580 AT3G44290.2 47.436 156 64 3 10 165 16 153 7.83e-43 154
Msa0083580 AT5G53950.1 47.126 174 70 6 3 169 12 170 8.00e-43 158
Msa0083580 AT1G12260.1 47.500 160 71 4 10 168 9 156 8.35e-43 159
Msa0083580 AT1G01720.1 42.640 197 95 7 10 200 9 193 1.02e-42 155
Msa0083580 AT5G24590.2 49.068 161 67 4 11 168 16 164 1.64e-42 159
Msa0083580 AT1G32510.1 42.857 175 84 3 10 177 8 173 2.28e-42 154
Msa0083580 AT2G27300.1 53.600 125 56 2 10 134 16 138 2.38e-42 155
Msa0083580 AT3G04070.2 33.645 321 183 10 10 315 12 317 3.11e-42 155
Msa0083580 AT3G29035.1 46.629 178 75 5 10 182 26 188 3.19e-42 155
Msa0083580 AT5G18270.1 50.307 163 66 5 10 169 23 173 4.01e-42 155
Msa0083580 AT3G44290.1 47.436 156 64 3 10 165 16 153 7.11e-42 154
Msa0083580 AT1G33280.1 45.625 160 73 3 10 168 10 156 7.57e-42 154
Msa0083580 AT1G62700.1 44.318 176 83 5 10 182 9 172 8.89e-42 155
Msa0083580 AT1G62700.2 44.318 176 83 5 10 182 9 172 8.89e-42 155
Msa0083580 AT5G22290.1 45.455 165 71 5 1 165 16 161 1.08e-41 154
Msa0083580 AT5G18270.2 50.307 163 66 5 10 169 23 173 1.57e-41 154
Msa0083580 AT3G04060.1 49.068 161 71 4 10 169 22 172 2.59e-41 153
Msa0083580 AT5G62380.2 46.914 162 69 5 10 168 9 156 2.60e-41 153
Msa0083580 AT5G62380.1 46.914 162 69 5 10 168 9 156 2.60e-41 153
Msa0083580 AT1G26870.1 43.902 164 87 3 10 171 18 178 3.86e-41 154
Msa0083580 AT4G36160.1 41.436 181 91 4 10 187 12 180 6.08e-41 153
Msa0083580 AT4G36160.3 41.436 181 91 4 10 187 12 180 6.08e-41 153
Msa0083580 AT4G36160.2 41.436 181 91 4 10 187 16 184 7.03e-41 153
Msa0083580 AT3G04070.1 32.239 335 185 11 10 315 12 333 7.48e-41 152
Msa0083580 AT1G76420.1 44.512 164 74 5 10 170 24 173 1.15e-40 151
Msa0083580 AT5G66300.1 41.954 174 89 3 10 182 14 176 1.39e-40 150
Msa0083580 AT5G08790.1 47.826 161 76 5 11 171 10 162 1.40e-40 149
Msa0083580 AT2G43000.1 43.827 162 80 3 10 171 20 170 1.49e-40 149
Msa0083580 AT1G61110.1 46.386 166 82 4 10 171 18 180 1.70e-40 150
Msa0083580 AT1G79580.3 44.099 161 75 4 10 168 19 166 3.06e-40 151
Msa0083580 AT1G79580.5 44.099 161 75 4 10 168 19 166 3.06e-40 151
Msa0083580 AT1G79580.4 44.099 161 75 4 10 168 19 166 3.06e-40 151
Msa0083580 AT1G79580.2 44.099 161 75 4 10 168 19 166 3.06e-40 151
Msa0083580 AT1G79580.1 44.099 161 75 4 10 168 19 166 3.06e-40 151
Msa0083580 AT1G56010.2 40.816 196 108 2 10 205 21 208 3.41e-40 149
Msa0083580 AT1G52890.1 43.636 165 81 3 10 174 16 168 5.31e-40 149
Msa0083580 AT4G27410.2 46.012 163 75 4 10 171 16 166 6.50e-40 148
Msa0083580 AT3G15500.1 44.848 165 79 3 10 174 16 168 7.24e-40 148
Msa0083580 AT3G12977.1 43.558 163 81 3 10 172 20 171 9.49e-40 147
Msa0083580 AT5G39820.1 42.938 177 82 5 10 171 22 194 1.23e-39 148
Msa0083580 AT1G32770.1 42.169 166 83 4 10 168 18 177 1.61e-39 149
Msa0083580 AT5G63790.1 44.512 164 83 4 11 174 53 208 5.24e-39 146
Msa0083580 AT5G63790.2 44.512 164 83 4 11 174 63 218 6.97e-39 146
Msa0083580 AT1G77450.1 44.785 163 76 6 10 170 12 162 1.33e-38 143
Msa0083580 AT4G27410.3 41.573 178 78 4 10 171 16 183 1.05e-37 142
Msa0083580 AT5G04395.1 45.860 157 67 4 10 152 30 182 1.44e-37 138
Msa0083580 AT3G15510.1 43.827 162 84 4 12 169 21 179 3.27e-37 142
Msa0083580 AT2G17040.1 41.818 165 76 4 10 171 8 155 3.96e-37 139
Msa0083580 AT2G02450.2 40.123 162 82 4 10 170 53 200 5.52e-37 143
Msa0083580 AT2G02450.1 40.123 162 82 4 10 170 53 200 5.55e-37 142
Msa0083580 AT3G12910.1 43.023 172 88 5 10 174 23 191 1.01e-36 139
Msa0083580 AT2G33480.1 45.399 163 72 4 10 171 17 163 1.74e-36 137
Msa0083580 AT2G33480.2 45.062 162 72 4 10 171 17 161 2.06e-36 137
Msa0083580 AT5G13180.1 43.195 169 76 5 10 175 16 167 5.14e-36 135
Msa0083580 AT4G28530.1 41.243 177 70 5 10 168 12 172 1.70e-34 134
Msa0083580 AT1G52880.1 43.114 167 81 5 12 171 21 180 1.05e-31 125
Msa0083580 AT3G10490.4 58.095 105 35 3 84 188 2 97 5.38e-31 124
Msa0083580 AT3G10490.3 58.095 105 35 3 84 188 2 97 5.38e-31 124
Msa0083580 AT4G01520.1 42.308 130 71 2 11 136 7 136 1.40e-30 122
Msa0083580 AT5G61430.2 49.153 118 51 2 57 174 1 109 1.69e-30 121
Msa0083580 AT4G01540.3 43.846 130 69 2 11 136 7 136 2.04e-30 124
Msa0083580 AT4G01540.4 43.846 130 69 2 11 136 7 136 2.35e-30 123
Msa0083580 AT4G01540.2 43.846 130 69 2 11 136 7 136 3.15e-30 124
Msa0083580 AT4G01540.1 43.846 130 69 2 11 136 7 136 4.57e-30 124
Msa0083580 AT3G12977.2 45.370 108 51 1 66 173 20 119 7.75e-27 109
Msa0083580 AT4G10350.2 46.602 103 46 1 66 168 20 113 9.13e-27 110
Msa0083580 AT4G01550.1 35.593 177 95 3 11 182 7 169 2.03e-26 113
Msa0083580 AT3G04420.2 41.600 125 72 1 11 134 6 130 2.99e-26 109
Msa0083580 AT1G56010.1 39.286 140 79 1 66 205 8 141 4.55e-26 108
Msa0083580 AT3G04420.1 41.600 125 72 1 11 134 6 130 8.50e-26 109
Msa0083580 AT1G02250.1 32.520 246 128 9 11 241 6 228 2.22e-25 108
Msa0083580 AT5G22380.1 33.333 165 99 5 11 171 8 165 2.22e-25 105
Msa0083580 AT1G02230.1 40.625 128 69 3 11 134 6 130 2.28e-25 108
Msa0083580 AT3G44350.2 30.488 164 103 3 11 171 8 163 9.23e-25 103
Msa0083580 AT3G44350.1 32.824 131 85 2 11 138 8 138 1.64e-22 95.1
Msa0083580 AT2G33480.3 44.860 107 48 2 66 171 10 106 6.34e-22 94.7
Msa0083580 AT4G28530.2 46.296 108 39 3 10 101 12 116 2.63e-21 95.5
Msa0083580 AT1G02220.1 37.600 125 74 2 11 134 6 127 4.91e-21 96.3
Msa0083580 AT1G01010.1 31.707 164 87 4 11 165 6 153 7.91e-20 92.8
Msa0083580 AT5G64530.1 31.953 169 93 6 10 171 5 158 1.60e-19 87.0
Msa0083580 AT5G64530.2 36.641 131 66 5 10 138 5 120 1.05e-18 84.0
Msa0083580 AT2G43000.2 39.362 94 49 1 75 168 4 89 4.31e-18 83.6
Msa0083580 AT5G22290.2 46.053 76 26 2 90 165 2 62 1.24e-16 80.1
Msa0083580 AT2G18060.2 36.364 99 51 2 90 187 3 90 2.27e-16 80.1
Msa0083580 AT3G04430.1 32.331 133 77 4 14 135 6 136 9.10e-16 76.6
Msa0083580 AT3G10500.2 35.758 165 71 7 449 603 269 408 7.29e-14 74.3
Msa0083580 AT3G55210.1 28.161 174 99 5 5 166 8 167 1.94e-13 71.6
Msa0083580 AT5G14000.2 31.496 127 78 4 11 134 18 138 3.92e-13 67.8
Msa0083580 AT3G56530.1 33.071 127 81 4 10 134 54 178 4.49e-13 71.2

Find 194 sgRNAs with CRISPR-Local

Find 259 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTACTTTGGTGCCTATTTC+TGG 0.060133 1_2:-62678809 Msa0083580:CDS
TTTGAAATTGATGAGAAATT+TGG 0.111696 1_2:+62681436 None:intergenic
AGGATCTAGCAGCGCCAAAT+TGG 0.239815 1_2:-62679238 Msa0083580:CDS
AGAATCCAAGCATATATATT+TGG 0.264088 1_2:+62679491 None:intergenic
AGCACTTCCAACTGTGTTAC+TGG 0.265170 1_2:+62679917 None:intergenic
TTGAAATTGATGAGAAATTT+GGG 0.274357 1_2:+62681437 None:intergenic
CCGTACTTCTCCCCATTCTT+AGG 0.288710 1_2:+62680619 None:intergenic
TGACTTTGTAGATTTCTTTA+CGG 0.291174 1_2:-62678594 Msa0083580:three_prime_UTR
GTCAAATCAGTAAGATAATC+AGG 0.296588 1_2:+62679636 None:intergenic
AATGAACCTTTGAAACTAGA+AGG 0.304326 1_2:-62680529 Msa0083580:CDS
GAGGAGGAATGGGAGAATTT+TGG 0.305278 1_2:-62680583 Msa0083580:CDS
TAAAATTGTGAGAAGATTCT+AGG 0.307477 1_2:+62681529 None:intergenic
GATCGGAAGCTTCATGTATA+CGG 0.313669 1_2:-62678696 Msa0083580:CDS
GAAGCAAGAGGGTAAATTTC+CGG 0.313971 1_2:+62681296 None:intergenic
CTTCAATCCAACTTCTGTTA+TGG 0.317313 1_2:-62679891 Msa0083580:CDS
CTACAGACCAAGCCAGAAAT+AGG 0.332472 1_2:+62678797 None:intergenic
ATCACGATTCTTAATATCAT+TGG 0.337803 1_2:+62679596 None:intergenic
CTGTAACCTGAGACCCAATT+TGG 0.341180 1_2:+62679224 None:intergenic
GATGAGATTTGTGTTTGTTT+TGG 0.344753 1_2:-62680695 Msa0083580:CDS
CTTGATAGCACGATCCTTGC+CGG 0.346192 1_2:+62680999 None:intergenic
GTGCTACTGATAGAGGTTAT+TGG 0.347368 1_2:-62681029 Msa0083580:CDS
TGATGAGAAATTTGGGACTT+AGG 0.354472 1_2:+62681444 None:intergenic
TTTGGTGCCTATTTCTGGCT+TGG 0.358034 1_2:-62678804 Msa0083580:CDS
TTGGAAACATCGTCGTCGTC+AGG 0.359162 1_2:+62679510 None:intergenic
CTCCCTTTGTTGAGGAGGAA+TGG 0.367626 1_2:-62680594 Msa0083580:CDS
TGCAGTTATATGAGCTGAAT+TGG 0.369810 1_2:+62678952 None:intergenic
GGCTGTCCATAGCTGGGAAT+GGG 0.371810 1_2:+62679444 None:intergenic
GAAGCTGAAGACAAAGGATT+TGG 0.371872 1_2:-62681109 Msa0083580:CDS
TAGCAGAGTTAACATCAGTT+TGG 0.372184 1_2:+62678828 None:intergenic
ATTTATGTTATCACATGGTT+GGG 0.372906 1_2:-62678765 Msa0083580:CDS
AGCAGAGTTAACATCAGTTT+GGG 0.377160 1_2:+62678829 None:intergenic
TTTAACACCGTTATGTCTAC+TGG 0.378066 1_2:-62678857 Msa0083580:CDS
TACGTTCATTAATAAATGCT+TGG 0.378930 1_2:+62679841 None:intergenic
AATAATATATCTGATCTATA+TGG 0.379133 1_2:-62679768 Msa0083580:CDS
AGTTAGATAAGAAACATGTT+TGG 0.379746 1_2:+62681486 None:intergenic
TATAGATCAGATATATTATT+AGG 0.379942 1_2:+62679771 None:intergenic
TTCAAAGGTTCATTATCAAC+AGG 0.383389 1_2:+62680538 None:intergenic
CTGCTAAGGAGTTGGCTTGT+GGG 0.383688 1_2:-62678997 Msa0083580:CDS
TGATGTTAACTCTGCTACTT+TGG 0.392276 1_2:-62678822 Msa0083580:CDS
CTAAGAATGGGGAGAAGTAC+GGG 0.400942 1_2:-62680618 Msa0083580:CDS
GGGTAAATGACATGCAAGTT+TGG 0.405934 1_2:-62678675 Msa0083580:exon
AGAAGTATGGTAATAGTATC+AGG 0.407886 1_2:-62681059 Msa0083580:CDS
ACGTTCATTAATAAATGCTT+GGG 0.412592 1_2:+62679842 None:intergenic
ACAATGAATAATGTTAAGAT+TGG 0.412780 1_2:+62678558 None:intergenic
GATGAGAAATTTGGGACTTA+GGG 0.415472 1_2:+62681445 None:intergenic
GTTAGATAAGAAACATGTTT+GGG 0.416201 1_2:+62681487 None:intergenic
ACCGCTTTCTACCAAGGTCC+TGG 0.419842 1_2:-62681378 Msa0083580:CDS
AATGATAGGCTGTCCATAGC+TGG 0.420213 1_2:+62679437 None:intergenic
CATTTATGTTATCACATGGT+TGG 0.423769 1_2:-62678766 Msa0083580:CDS
GTGGTTCGGGGCCTAAGAAT+GGG 0.426791 1_2:-62680630 Msa0083580:CDS
TATTAATGAACGTAAGCAAT+TGG 0.427450 1_2:-62679832 Msa0083580:CDS
CTTCATCTGTAGGGTGGAAT+CGG 0.427924 1_2:+62681352 None:intergenic
GGCGCTGCTAGATCCTCCTT+TGG 0.437971 1_2:+62679245 None:intergenic
TAATACCTGCACTCCAGCTT+TGG 0.440305 1_2:+62680858 None:intergenic
CGCGAACCTGATCGAGGTCA+TGG 0.440556 1_2:+62680362 None:intergenic
TCCCTTTGTTGAGGAGGAAT+GGG 0.443540 1_2:-62680593 Msa0083580:CDS
AGTGGTTCGGGGCCTAAGAA+TGG 0.444141 1_2:-62680631 Msa0083580:CDS
ACTGCGTTGGACAAGAAGTA+TGG 0.444700 1_2:-62681072 Msa0083580:CDS
TGATGTACTGGTGGATCCCT+TGG 0.449135 1_2:-62680452 Msa0083580:CDS
CCTAAGAATGGGGAGAAGTA+CGG 0.449248 1_2:-62680619 Msa0083580:CDS
GTGAGAAGATTCTAGGACCT+TGG 0.449837 1_2:+62681536 None:intergenic
AAGTCCTCGTAAGTAGAATC+AGG 0.450580 1_2:+62680394 None:intergenic
TGATTTGACTGATGAGTACT+TGG 0.451759 1_2:-62679622 Msa0083580:CDS
TTCTGTACCTGATGATGTAC+TGG 0.454452 1_2:-62680464 Msa0083580:CDS
CCTGCTAAGGAGTTGGCTTG+TGG 0.455079 1_2:-62678998 Msa0083580:CDS
CTTTCACTCCTTGCATTCAA+AGG 0.455582 1_2:+62679468 None:intergenic
CACATGGTGATCGAAGCAAT+TGG 0.460401 1_2:-62680918 Msa0083580:CDS
CACTTGTTTATCACTTGGGT+CGG 0.461744 1_2:-62680945 Msa0083580:CDS
ATGGTACTTCTTCACTGCGT+TGG 0.462664 1_2:-62681085 Msa0083580:CDS
CGAACAATTTCTTCATCTGT+AGG 0.463070 1_2:+62681342 None:intergenic
GCAGCGCCAAATTGGGTCTC+AGG 0.465580 1_2:-62679230 Msa0083580:intron
AGGCATAATAATCAAGCATT+CGG 0.467775 1_2:-62678366 Msa0083580:three_prime_UTR
TGTTTCCAAATATATATGCT+TGG 0.471640 1_2:-62679496 Msa0083580:CDS
GGATCTAGCAGCGCCAAATT+GGG 0.473993 1_2:-62679237 Msa0083580:CDS
TGCATCAGAGTTTCCTGCTA+AGG 0.474003 1_2:-62679011 Msa0083580:CDS
GTAAACCCTTCTAGTTTCAA+AGG 0.474396 1_2:+62680523 None:intergenic
TATGTTGGCCAACAACCTAT+TGG 0.476399 1_2:+62679051 None:intergenic
ACGAATCGTGCTACTGATAG+AGG 0.479755 1_2:-62681036 Msa0083580:CDS
GATGCAAAATTGAAATTCAA+AGG 0.480037 1_2:+62679687 None:intergenic
ACACTCTCCATAACAGAAGT+TGG 0.481256 1_2:+62679884 None:intergenic
ACCATAACCTGCTCAATGAT+AGG 0.481307 1_2:+62679423 None:intergenic
GATGCAAATGCAGGTGGAGC+AGG 0.481874 1_2:+62679028 None:intergenic
TTAGAGGCAATGCGATGGAT+TGG 0.483997 1_2:-62678901 Msa0083580:CDS
TGAAACCCATGACCTCGATC+AGG 0.485558 1_2:-62680368 Msa0083580:intron
TGGATTCTCCTTTGAATGCA+AGG 0.486310 1_2:-62679476 Msa0083580:CDS
AGGCTGTCCATAGCTGGGAA+TGG 0.491587 1_2:+62679443 None:intergenic
TCCCATTCCTCCTCAACAAA+GGG 0.491594 1_2:+62680592 None:intergenic
GAATTGGATGACTCAGCTGC+AGG 0.500175 1_2:+62678968 None:intergenic
CCACAAGCCAACTCCTTAGC+AGG 0.500568 1_2:+62678998 None:intergenic
ACATGGTGATCGAAGCAATT+GGG 0.507365 1_2:-62680917 Msa0083580:CDS
GATGAGACTTTAGCCAAAGC+TGG 0.508004 1_2:-62680871 Msa0083580:CDS
TTCACGAGTTCATCAACATC+AGG 0.509294 1_2:+62680499 None:intergenic
TTCATTATCAACAGGCGGCA+AGG 0.512774 1_2:+62680546 None:intergenic
AGAGTTTCCTGCTAAGGAGT+TGG 0.513288 1_2:-62679005 Msa0083580:CDS
GAAGACACTTGTTTATCACT+TGG 0.516829 1_2:-62680950 Msa0083580:CDS
ATTGGGTCATGCATGAGTAT+AGG 0.516923 1_2:-62680900 Msa0083580:CDS
ATGCTTGGGAATACTGAGGA+TGG 0.519813 1_2:+62679856 None:intergenic
CTATTCATTATATACTATGT+TGG 0.520677 1_2:-62678408 Msa0083580:three_prime_UTR
TGGAAACATCGTCGTCGTCA+GGG 0.521816 1_2:+62679511 None:intergenic
AATTCAGCTCATATAACTGC+AGG 0.522347 1_2:-62678950 Msa0083580:CDS
TTTAGCCAAAGCTGGAGTGC+AGG 0.526882 1_2:-62680863 Msa0083580:intron
GATTGGATGGTGGACAAGAA+TGG 0.532762 1_2:-62678884 Msa0083580:CDS
ATCGGAAGCTTCATGTATAC+GGG 0.534310 1_2:-62678695 Msa0083580:CDS
GGATCCACCAGTACATCATC+AGG 0.534443 1_2:+62680457 None:intergenic
TTAACACCGTTATGTCTACT+GGG 0.535683 1_2:-62678856 Msa0083580:CDS
GTTTGTCAAGGAACTACCAT+AGG 0.538784 1_2:+62679307 None:intergenic
GAACAATTTCTTCATCTGTA+GGG 0.541473 1_2:+62681343 None:intergenic
GAAAGCCCCATTCCCAGCTA+TGG 0.541885 1_2:-62679450 Msa0083580:CDS
AAGACACTTGTTTATCACTT+GGG 0.542978 1_2:-62680949 Msa0083580:CDS
ACTTGTTTATCACTTGGGTC+GGG 0.543479 1_2:-62680944 Msa0083580:CDS
TCATTATCAACAGGCGGCAA+GGG 0.543494 1_2:+62680547 None:intergenic
CTCCCATTCCTCCTCAACAA+AGG 0.545530 1_2:+62680591 None:intergenic
CACTTGGGTCGGGCTCCACA+TGG 0.545932 1_2:-62680934 Msa0083580:CDS
CCGCTTTCTACCAAGGTCCT+GGG 0.551610 1_2:-62681377 Msa0083580:CDS
GACATACTGGGAAGGTCCCA+TGG 0.553857 1_2:+62681237 None:intergenic
ATGAACCTTTGAAACTAGAA+GGG 0.554073 1_2:-62680528 Msa0083580:CDS
CGATCTTGAAACTCAGTGAA+AGG 0.554572 1_2:+62678714 None:intergenic
CTTTCACTGAGTTTCAAGAT+CGG 0.555244 1_2:-62678713 Msa0083580:CDS
CGGGGCTCCCTTTGTTGAGG+AGG 0.555447 1_2:-62680599 Msa0083580:CDS
GAGAACGATGCTTAACTGAC+TGG 0.557153 1_2:+62678637 None:intergenic
TAAAGAAATCTACAAAGTCA+TGG 0.557593 1_2:+62678597 None:intergenic
GAAGCATGCCAATAGGTTGT+TGG 0.558530 1_2:-62679059 Msa0083580:CDS
TGGACAGCCTATCATTGAGC+AGG 0.558645 1_2:-62679430 Msa0083580:intron
TCATGAAGATTTACCAAAGG+AGG 0.560098 1_2:-62679258 Msa0083580:CDS
AATATCAATTCAGTGCAAGA+TGG 0.561413 1_2:-62679741 Msa0083580:CDS
AAGGATCGTGCTATCAAGAA+TGG 0.564256 1_2:-62680994 Msa0083580:CDS
TCTCTTCCACGACACTTCCA+AGG 0.564537 1_2:-62681553 None:intergenic
TCAAATCAGTAAGATAATCA+GGG 0.565317 1_2:+62679637 None:intergenic
CGTCGTCGTCAGGGCATGCA+AGG 0.569292 1_2:+62679520 None:intergenic
AATATATCTGATCTATATGG+TGG 0.571230 1_2:-62679765 Msa0083580:CDS
AAGAATGGAGAGGAGACTGT+TGG 0.572368 1_2:-62680979 Msa0083580:CDS
TGTACCTGATGATGTACTGG+TGG 0.572636 1_2:-62680461 Msa0083580:CDS
TGCAGGTGGAGCAGGTATGT+TGG 0.572952 1_2:+62679036 None:intergenic
ACATCTACAAATTCGAGCCA+TGG 0.573608 1_2:-62681254 Msa0083580:CDS
GGAAACTCTGATGCAAATGC+AGG 0.577041 1_2:+62679019 None:intergenic
TCTAGCATTGCAGCAACAGA+AGG 0.578501 1_2:+62679549 None:intergenic
AATGTGGAGGGCGAAACCTA+TGG 0.578503 1_2:-62679323 Msa0083580:CDS
TGGATGGTGGACAAGAATGG+AGG 0.578543 1_2:-62678881 Msa0083580:CDS
ATGATAGGCTGTCCATAGCT+GGG 0.578547 1_2:+62679438 None:intergenic
ATCTACTTGTTTCGTCCTCG+AGG 0.580131 1_2:-62678335 None:intergenic
GAGATATAATTTGATTCACC+AGG 0.580669 1_2:-62678386 Msa0083580:three_prime_UTR
CAATTTCTTCATCTGTAGGG+TGG 0.582331 1_2:+62681346 None:intergenic
GTACGGGGCTCCCTTTGTTG+AGG 0.584130 1_2:-62680602 Msa0083580:CDS
AGAGGTTATTGGAAGACTAC+CGG 0.589404 1_2:-62681018 Msa0083580:CDS
ATATATCTGATCTATATGGT+GGG 0.590562 1_2:-62679764 Msa0083580:CDS
GGAATCGGAACCCAGGACCT+TGG 0.593127 1_2:+62681367 None:intergenic
GCGAACCTGATCGAGGTCAT+GGG 0.593464 1_2:+62680363 None:intergenic
AGGATGCTTATGTCCTGTGT+AGG 0.594455 1_2:-62680666 Msa0083580:CDS
GAATGCTTGATTATTATGCC+TGG 0.595259 1_2:+62678368 None:intergenic
CATCTACAAATTCGAGCCAT+GGG 0.597761 1_2:-62681253 Msa0083580:CDS
ATTGATACCAGTAACACAGT+TGG 0.598796 1_2:-62679924 Msa0083580:CDS
TGGTTCGGGGCCTAAGAATG+GGG 0.603951 1_2:-62680629 Msa0083580:CDS
AACTCTGATGCAAATGCAGG+TGG 0.607180 1_2:+62679022 None:intergenic
ATCGTTCTCATTGAATGACT+AGG 0.608878 1_2:-62678623 Msa0083580:three_prime_UTR
TGCTTGGGAATACTGAGGAT+GGG 0.611896 1_2:+62679857 None:intergenic
AATTGGATGACTCAGCTGCA+GGG 0.612514 1_2:+62678969 None:intergenic
GAAGGAACCGCTTTCTACCA+AGG 0.613452 1_2:-62681384 Msa0083580:CDS
TGAAGACAAAGGATTTGGAA+TGG 0.614061 1_2:-62681104 Msa0083580:CDS
GATGTCGAAGCTGAAGACAA+AGG 0.616687 1_2:-62681115 Msa0083580:CDS
AGGCAATGCGATGGATTGGA+TGG 0.617737 1_2:-62678897 Msa0083580:CDS
ACAGAAGGATCAATCTCAGT+GGG 0.618605 1_2:+62679564 None:intergenic
GTGCAAGATGGATACAATGG+TGG 0.619749 1_2:-62679729 Msa0083580:CDS
ATCAGGTACAGAAACTGCCA+AGG 0.622479 1_2:+62680474 None:intergenic
CCCAGGACCTTGGTAGAAAG+CGG 0.622774 1_2:+62681377 None:intergenic
GCTGTCCATAGCTGGGAATG+GGG 0.625492 1_2:+62679445 None:intergenic
TGCAAGATGGATACAATGGT+GGG 0.628172 1_2:-62679728 Msa0083580:CDS
TGATGAACTCGTGAATCCCT+TGG 0.630807 1_2:-62680491 Msa0083580:CDS
TTGTCATGAAGATTTACCAA+AGG 0.633220 1_2:-62679261 Msa0083580:CDS
AGCGAGATAATCGAAGCAAG+AGG 0.634728 1_2:+62681284 None:intergenic
GCGAGATAATCGAAGCAAGA+GGG 0.635232 1_2:+62681285 None:intergenic
GGAAAACCCAGTAGACATAA+CGG 0.635521 1_2:+62678850 None:intergenic
CAAATCAGTAAGATAATCAG+GGG 0.637474 1_2:+62679638 None:intergenic
TCTTGATATGTATGAACATG+AGG 0.640341 1_2:-62679802 Msa0083580:CDS
GTCAGAACTTAAAACTATCG+AGG 0.640688 1_2:+62678438 None:intergenic
GTAGGGTGGAATCGGAACCC+AGG 0.641481 1_2:+62681360 None:intergenic
TCAGTGCAAGATGGATACAA+TGG 0.642636 1_2:-62679732 Msa0083580:CDS
AAAGGTTCATTATCAACAGG+CGG 0.643229 1_2:+62680541 None:intergenic
ACTGCATTTATGTTATCACA+TGG 0.644214 1_2:-62678770 Msa0083580:CDS
GGGTCATTGACAGAATGTGG+AGG 0.644623 1_2:-62679336 Msa0083580:intron
GGTCATTGACAGAATGTGGA+GGG 0.649146 1_2:-62679335 Msa0083580:intron
ATGTTCATACATATCAAGAG+TGG 0.654095 1_2:+62679806 None:intergenic
AAGAAGATGACATACTGGGA+AGG 0.657085 1_2:+62681229 None:intergenic
TAAGAATGGGGAGAAGTACG+GGG 0.658394 1_2:-62680617 Msa0083580:CDS
TCTTCTCGAAAATCCTACAC+AGG 0.659647 1_2:+62680653 None:intergenic
CAATGCGATGGATTGGATGG+TGG 0.669977 1_2:-62678894 Msa0083580:CDS
ATAAATGCTTGGGAATACTG+AGG 0.674761 1_2:+62679852 None:intergenic
TCGTGCTATCAAGAATGGAG+AGG 0.674964 1_2:-62680989 Msa0083580:CDS
AACAGAAGGATCAATCTCAG+TGG 0.687881 1_2:+62679563 None:intergenic
ATGCAACGCGAACCTGATCG+AGG 0.688963 1_2:+62680356 None:intergenic
TTATTGGAAGACTACCGGCA+AGG 0.695043 1_2:-62681013 Msa0083580:CDS
TCAGGTACAGAAACTGCCAA+GGG 0.701648 1_2:+62680475 None:intergenic
CAATTGCTTCGATCACCATG+TGG 0.709636 1_2:+62680919 None:intergenic
TGTGCCTGATTCTACTTACG+AGG 0.713357 1_2:-62680398 Msa0083580:CDS
AAATCAGTAAGATAATCAGG+GGG 0.738324 1_2:+62679639 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTATTTTTATTTTTT+TGG - chr1_2:62681360-62681379 Msa0083580:CDS 0.0%
!! AAATTAGAATTAAATATGAT+GGG + chr1_2:62679911-62679930 None:intergenic 10.0%
!! AAAATTAGAATTAAATATGA+TGG + chr1_2:62679912-62679931 None:intergenic 10.0%
!! AAAATAAAAATAAAAAATGC+AGG + chr1_2:62681358-62681377 None:intergenic 10.0%
!!! TTTTTGTAATTTATTGAACT+GGG - chr1_2:62679101-62679120 Msa0083580:intron 15.0%
!!! TTTTGTGTAATTTATGAAAT+TGG - chr1_2:62679124-62679143 Msa0083580:intron 15.0%
!! TTTGTGTAATTTATGAAATT+GGG - chr1_2:62679125-62679144 Msa0083580:intron 15.0%
!!! GATTTATTTATTTTTTATCG+TGG - chr1_2:62679716-62679735 Msa0083580:CDS 15.0%
!! TATAGATCAGATATATTATT+AGG + chr1_2:62680112-62680131 None:intergenic 15.0%
!! AATAATATATCTGATCTATA+TGG - chr1_2:62680112-62680131 Msa0083580:intron 15.0%
!! TGATAAAAACAAAAATTAGA+AGG + chr1_2:62680773-62680792 None:intergenic 15.0%
!!! AATTTTTGTTTTTATCACTT+CGG - chr1_2:62680776-62680795 Msa0083580:intron 15.0%
!! TTGAAATTGATGAGAAATTT+GGG + chr1_2:62678446-62678465 None:intergenic 20.0%
!!! TTTGAAATTGATGAGAAATT+TGG + chr1_2:62678447-62678466 None:intergenic 20.0%
!!! GTTTTTGTAATTTATTGAAC+TGG - chr1_2:62679100-62679119 Msa0083580:intron 20.0%
!!! TTTTTTAATCAAACTTTTGC+TGG - chr1_2:62679687-62679706 Msa0083580:CDS 20.0%
!!! TTTTTAATCAAACTTTTGCT+GGG - chr1_2:62679688-62679707 Msa0083580:CDS 20.0%
!! AAGTAGATAATATAACAAGT+AGG + chr1_2:62679877-62679896 None:intergenic 20.0%
!! TAGAAATATCTTCAATTACT+AGG - chr1_2:62679931-62679950 Msa0083580:intron 20.0%
!! ACAATGAATAATGTTAAGAT+TGG + chr1_2:62681325-62681344 None:intergenic 20.0%
!! CTATTCATTATATACTATGT+TGG - chr1_2:62681472-62681491 Msa0083580:five_prime_UTR 20.0%
! TAAAATTGTGAGAAGATTCT+AGG + chr1_2:62678354-62678373 None:intergenic 25.0%
! GTTAGATAAGAAACATGTTT+GGG + chr1_2:62678396-62678415 None:intergenic 25.0%
! AGTTAGATAAGAAACATGTT+TGG + chr1_2:62678397-62678416 None:intergenic 25.0%
!! TCTGTTTTCTATCAAATCAA+TGG - chr1_2:62678474-62678493 Msa0083580:three_prime_UTR 25.0%
!! TTTTCTATCAAATCAATGGA+AGG - chr1_2:62678478-62678497 Msa0083580:three_prime_UTR 25.0%
! TAAACAATCCAACATCATTA+AGG + chr1_2:62679550-62679569 None:intergenic 25.0%
!! TTTTAATCAAACTTTTGCTG+GGG - chr1_2:62679689-62679708 Msa0083580:CDS 25.0%
! ACGTTCATTAATAAATGCTT+GGG + chr1_2:62680041-62680060 None:intergenic 25.0%
! TACGTTCATTAATAAATGCT+TGG + chr1_2:62680042-62680061 None:intergenic 25.0%
! TATTAATGAACGTAAGCAAT+TGG - chr1_2:62680048-62680067 Msa0083580:intron 25.0%
! AATATATCTGATCTATATGG+TGG - chr1_2:62680115-62680134 Msa0083580:intron 25.0%
! ATATATCTGATCTATATGGT+GGG - chr1_2:62680116-62680135 Msa0083580:intron 25.0%
!! AATTCAAAGGATTTTCGTTA+TGG + chr1_2:62680183-62680202 None:intergenic 25.0%
! GATGCAAAATTGAAATTCAA+AGG + chr1_2:62680196-62680215 None:intergenic 25.0%
! TCAAATCAGTAAGATAATCA+GGG + chr1_2:62680246-62680265 None:intergenic 25.0%
! ATCACGATTCTTAATATCAT+TGG + chr1_2:62680287-62680306 None:intergenic 25.0%
! TGTTTCCAAATATATATGCT+TGG - chr1_2:62680384-62680403 Msa0083580:CDS 25.0%
! AGAATCCAAGCATATATATT+TGG + chr1_2:62680392-62680411 None:intergenic 25.0%
! AAAAACATGTTTGTTTGTCA+AGG + chr1_2:62680588-62680607 None:intergenic 25.0%
!!! ATTACAGACATTACTTTTAG+AGG - chr1_2:62680963-62680982 Msa0083580:CDS 25.0%
! ATTTATGTTATCACATGGTT+GGG - chr1_2:62681115-62681134 Msa0083580:CDS 25.0%
! TAAAGAAATCTACAAAGTCA+TGG + chr1_2:62681286-62681305 None:intergenic 25.0%
! TGACTTTGTAGATTTCTTTA+CGG - chr1_2:62681286-62681305 Msa0083580:CDS 25.0%
GAACAATTTCTTCATCTGTA+GGG + chr1_2:62678540-62678559 None:intergenic 30.0%
TACCTTAAGAAAAAACTCAC+CGG - chr1_2:62678565-62678584 Msa0083580:three_prime_UTR 30.0%
! AGAAGTATGGTAATAGTATC+AGG - chr1_2:62678821-62678840 Msa0083580:CDS 30.0%
AAGACACTTGTTTATCACTT+GGG - chr1_2:62678931-62678950 Msa0083580:CDS 30.0%
! GATGAGATTTGTGTTTGTTT+TGG - chr1_2:62679185-62679204 Msa0083580:intron 30.0%
TTCAAAGGTTCATTATCAAC+AGG + chr1_2:62679345-62679364 None:intergenic 30.0%
!! AATGAACCTTTGAAACTAGA+AGG - chr1_2:62679351-62679370 Msa0083580:intron 30.0%
!! ATGAACCTTTGAAACTAGAA+GGG - chr1_2:62679352-62679371 Msa0083580:intron 30.0%
! TATTTTGTAAACTTTGCCTG+TGG - chr1_2:62679598-62679617 Msa0083580:CDS 30.0%
! ATTTTGTAAACTTTGCCTGT+GGG - chr1_2:62679599-62679618 Msa0083580:CDS 30.0%
AATCAAGCAAAGCAACAAAA+TGG + chr1_2:62679669-62679688 None:intergenic 30.0%
TGTCTATCATTCAACAGAAA+AGG + chr1_2:62679788-62679807 None:intergenic 30.0%
ATGTTCATACATATCAAGAG+TGG + chr1_2:62680077-62680096 None:intergenic 30.0%
TCTTGATATGTATGAACATG+AGG - chr1_2:62680078-62680097 Msa0083580:intron 30.0%
AATATCAATTCAGTGCAAGA+TGG - chr1_2:62680139-62680158 Msa0083580:intron 30.0%
! GAATTTCAATTTTGCATCTG+AGG - chr1_2:62680198-62680217 Msa0083580:intron 30.0%
AAATCAGTAAGATAATCAGG+GGG + chr1_2:62680244-62680263 None:intergenic 30.0%
CAAATCAGTAAGATAATCAG+GGG + chr1_2:62680245-62680264 None:intergenic 30.0%
GTCAAATCAGTAAGATAATC+AGG + chr1_2:62680247-62680266 None:intergenic 30.0%
! ATAGCCGTCTTAAAATCTTT+TGG - chr1_2:62680522-62680541 Msa0083580:CDS 30.0%
! TAGCCGTCTTAAAATCTTTT+GGG - chr1_2:62680523-62680542 Msa0083580:CDS 30.0%
TTGTCATGAAGATTTACCAA+AGG - chr1_2:62680619-62680638 Msa0083580:CDS 30.0%
AATAACAGCTTGAGAAATCA+GGG + chr1_2:62680698-62680717 None:intergenic 30.0%
AAATAACAGCTTGAGAAATC+AGG + chr1_2:62680699-62680718 None:intergenic 30.0%
!! TTTTTGTGTGTGTGTTATTG+TGG - chr1_2:62680716-62680735 Msa0083580:intron 30.0%
ACTGCATTTATGTTATCACA+TGG - chr1_2:62681110-62681129 Msa0083580:CDS 30.0%
CATTTATGTTATCACATGGT+TGG - chr1_2:62681114-62681133 Msa0083580:CDS 30.0%
!!! AGTTTTAAGTTCTGACTGAT+AGG - chr1_2:62681449-62681468 Msa0083580:five_prime_UTR 30.0%
GAGATATAATTTGATTCACC+AGG - chr1_2:62681494-62681513 Msa0083580:five_prime_UTR 30.0%
AGGCATAATAATCAAGCATT+CGG - chr1_2:62681514-62681533 Msa0083580:five_prime_UTR 30.0%
! GATGAGAAATTTGGGACTTA+GGG + chr1_2:62678438-62678457 None:intergenic 35.0%
! TGATGAGAAATTTGGGACTT+AGG + chr1_2:62678439-62678458 None:intergenic 35.0%
CGAACAATTTCTTCATCTGT+AGG + chr1_2:62678541-62678560 None:intergenic 35.0%
!!! TTCCGGTGAGTTTTTTCTTA+AGG + chr1_2:62678570-62678589 None:intergenic 35.0%
AGAGAAGAAGATGACATACT+GGG + chr1_2:62678658-62678677 None:intergenic 35.0%
TAGAGAAGAAGATGACATAC+TGG + chr1_2:62678659-62678678 None:intergenic 35.0%
GTATGTCATCTTCTTCTCTA+TGG - chr1_2:62678659-62678678 Msa0083580:three_prime_UTR 35.0%
TCTTCTTCTCTATGGTTTCA+TGG - chr1_2:62678667-62678686 Msa0083580:three_prime_UTR 35.0%
TGAAGACAAAGGATTTGGAA+TGG - chr1_2:62678776-62678795 Msa0083580:CDS 35.0%
GAAGACACTTGTTTATCACT+TGG - chr1_2:62678930-62678949 Msa0083580:CDS 35.0%
!!! GAGATTTGTGTTTGTTTTGG+TGG - chr1_2:62679188-62679207 Msa0083580:intron 35.0%
AAAGGTTCATTATCAACAGG+CGG + chr1_2:62679342-62679361 None:intergenic 35.0%
!! GTAAACCCTTCTAGTTTCAA+AGG + chr1_2:62679360-62679379 None:intergenic 35.0%
!! TCGTCATAAAAAGCATCCAA+GGG + chr1_2:62679447-62679466 None:intergenic 35.0%
!! ATGCTTTTTATGACGAGCTT+TGG - chr1_2:62679451-62679470 Msa0083580:CDS 35.0%
TTCATTCATGTTTGTGCTGT+TGG - chr1_2:62679573-62679592 Msa0083580:CDS 35.0%
AATCTGTGCCAAAACATATC+TGG + chr1_2:62679750-62679769 None:intergenic 35.0%
ATTGATACCAGTAACACAGT+TGG - chr1_2:62679956-62679975 Msa0083580:intron 35.0%
CTTCAATCCAACTTCTGTTA+TGG - chr1_2:62679989-62680008 Msa0083580:intron 35.0%
ATAAATGCTTGGGAATACTG+AGG + chr1_2:62680031-62680050 None:intergenic 35.0%
TGATTTGACTGATGAGTACT+TGG - chr1_2:62680258-62680277 Msa0083580:intron 35.0%
! AGCCGTCTTAAAATCTTTTG+GGG - chr1_2:62680524-62680543 Msa0083580:CDS 35.0%
!! GACCCCAAAAGATTTTAAGA+CGG + chr1_2:62680529-62680548 None:intergenic 35.0%
TCATGAAGATTTACCAAAGG+AGG - chr1_2:62680622-62680641 Msa0083580:CDS 35.0%
! AATCAGGGTTTAAAGTGAGT+GGG + chr1_2:62680683-62680702 None:intergenic 35.0%
! AAATCAGGGTTTAAAGTGAG+TGG + chr1_2:62680684-62680703 None:intergenic 35.0%
!!! TTTGTTTTTATCACTTCGGC+AGG - chr1_2:62680780-62680799 Msa0083580:intron 35.0%
TGCAGTTATATGAGCTGAAT+TGG + chr1_2:62680931-62680950 None:intergenic 35.0%
AATTCAGCTCATATAACTGC+AGG - chr1_2:62680930-62680949 Msa0083580:CDS 35.0%
TTTAACACCGTTATGTCTAC+TGG - chr1_2:62681023-62681042 Msa0083580:CDS 35.0%
TTAACACCGTTATGTCTACT+GGG - chr1_2:62681024-62681043 Msa0083580:CDS 35.0%
AGCAGAGTTAACATCAGTTT+GGG + chr1_2:62681054-62681073 None:intergenic 35.0%
TAGCAGAGTTAACATCAGTT+TGG + chr1_2:62681055-62681074 None:intergenic 35.0%
! TGATGTTAACTCTGCTACTT+TGG - chr1_2:62681058-62681077 Msa0083580:CDS 35.0%
CTTTCACTGAGTTTCAAGAT+CGG - chr1_2:62681167-62681186 Msa0083580:intron 35.0%
ATCGTTCTCATTGAATGACT+AGG - chr1_2:62681257-62681276 Msa0083580:CDS 35.0%
GTCAGAACTTAAAACTATCG+AGG + chr1_2:62681445-62681464 None:intergenic 35.0%
GAATGCTTGATTATTATGCC+TGG + chr1_2:62681515-62681534 None:intergenic 35.0%
CAATTTCTTCATCTGTAGGG+TGG + chr1_2:62678537-62678556 None:intergenic 40.0%
GAAGCAAGAGGGTAAATTTC+CGG + chr1_2:62678587-62678606 None:intergenic 40.0%
ACATCTACAAATTCGAGCCA+TGG - chr1_2:62678626-62678645 Msa0083580:three_prime_UTR 40.0%
CATCTACAAATTCGAGCCAT+GGG - chr1_2:62678627-62678646 Msa0083580:three_prime_UTR 40.0%
AAGAAGATGACATACTGGGA+AGG + chr1_2:62678654-62678673 None:intergenic 40.0%
GAAGCTGAAGACAAAGGATT+TGG - chr1_2:62678771-62678790 Msa0083580:CDS 40.0%
! GTGCTACTGATAGAGGTTAT+TGG - chr1_2:62678851-62678870 Msa0083580:CDS 40.0%
AGAGGTTATTGGAAGACTAC+CGG - chr1_2:62678862-62678881 Msa0083580:CDS 40.0%
AAGGATCGTGCTATCAAGAA+TGG - chr1_2:62678886-62678905 Msa0083580:CDS 40.0%
CACTTGTTTATCACTTGGGT+CGG - chr1_2:62678935-62678954 Msa0083580:CDS 40.0%
ACTTGTTTATCACTTGGGTC+GGG - chr1_2:62678936-62678955 Msa0083580:CDS 40.0%
ACATGGTGATCGAAGCAATT+GGG - chr1_2:62678963-62678982 Msa0083580:CDS 40.0%
ATTGGGTCATGCATGAGTAT+AGG - chr1_2:62678980-62678999 Msa0083580:CDS 40.0%
!!! TGTGTTTGTTTTGGTGGAGA+AGG - chr1_2:62679194-62679213 Msa0083580:intron 40.0%
TCTTCTCGAAAATCCTACAC+AGG + chr1_2:62679230-62679249 None:intergenic 40.0%
!! TGTAGGATTTTCGAGAAGAG+TGG - chr1_2:62679231-62679250 Msa0083580:CDS 40.0%
!! GATTTTCGAGAAGAGTGGTT+CGG - chr1_2:62679236-62679255 Msa0083580:CDS 40.0%
!! ATTTTCGAGAAGAGTGGTTC+GGG - chr1_2:62679237-62679256 Msa0083580:CDS 40.0%
TTCACGAGTTCATCAACATC+AGG + chr1_2:62679384-62679403 None:intergenic 40.0%
! TTCTGTACCTGATGATGTAC+TGG - chr1_2:62679416-62679435 Msa0083580:intron 40.0%
!! CTCGTCATAAAAAGCATCCA+AGG + chr1_2:62679448-62679467 None:intergenic 40.0%
AAGTCCTCGTAAGTAGAATC+AGG + chr1_2:62679489-62679508 None:intergenic 40.0%
CGTTGCATCCTTAATGATGT+TGG - chr1_2:62679539-62679558 Msa0083580:CDS 40.0%
AAGCATTCAATCTATCCCAC+AGG + chr1_2:62679617-62679636 None:intergenic 40.0%
! TAATCAAACTTTTGCTGGGG+TGG - chr1_2:62679692-62679711 Msa0083580:CDS 40.0%
! CCAAAACATATCTGGAACGA+TGG + chr1_2:62679742-62679761 None:intergenic 40.0%
! CCATCGTTCCAGATATGTTT+TGG - chr1_2:62679739-62679758 Msa0083580:CDS 40.0%
ACACTCTCCATAACAGAAGT+TGG + chr1_2:62679999-62680018 None:intergenic 40.0%
TCAGTGCAAGATGGATACAA+TGG - chr1_2:62680148-62680167 Msa0083580:intron 40.0%
TGCAAGATGGATACAATGGT+GGG - chr1_2:62680152-62680171 Msa0083580:intron 40.0%
! CAATTTTGCATCTGAGGAAC+TGG - chr1_2:62680204-62680223 Msa0083580:intron 40.0%
ACAGAAGGATCAATCTCAGT+GGG + chr1_2:62680319-62680338 None:intergenic 40.0%
AACAGAAGGATCAATCTCAG+TGG + chr1_2:62680320-62680339 None:intergenic 40.0%
TGGATTCTCCTTTGAATGCA+AGG - chr1_2:62680404-62680423 Msa0083580:CDS 40.0%
CTTTCACTCCTTGCATTCAA+AGG + chr1_2:62680415-62680434 None:intergenic 40.0%
ACCATAACCTGCTCAATGAT+AGG + chr1_2:62680460-62680479 None:intergenic 40.0%
GTTTGTCAAGGAACTACCAT+AGG + chr1_2:62680576-62680595 None:intergenic 40.0%
! CTTTTGTGAAGCATGCCAAT+AGG - chr1_2:62680814-62680833 Msa0083580:intron 40.0%
TATGTTGGCCAACAACCTAT+TGG + chr1_2:62680832-62680851 None:intergenic 40.0%
!! TACTTTTAGAGGCAATGCGA+TGG - chr1_2:62680974-62680993 Msa0083580:CDS 40.0%
GGAAAACCCAGTAGACATAA+CGG + chr1_2:62681033-62681052 None:intergenic 40.0%
! ACATGGTTGGGTTTTCTTGA+TGG - chr1_2:62681127-62681146 Msa0083580:intron 40.0%
! CATGGTTGGGTTTTCTTGAT+GGG - chr1_2:62681128-62681147 Msa0083580:intron 40.0%
CGATCTTGAAACTCAGTGAA+AGG + chr1_2:62681169-62681188 None:intergenic 40.0%
GATCGGAAGCTTCATGTATA+CGG - chr1_2:62681184-62681203 Msa0083580:intron 40.0%
ATCGGAAGCTTCATGTATAC+GGG - chr1_2:62681185-62681204 Msa0083580:intron 40.0%
GGGTAAATGACATGCAAGTT+TGG - chr1_2:62681205-62681224 Msa0083580:intron 40.0%
!! GTGAGAAGATTCTAGGACCT+TGG + chr1_2:62678347-62678366 None:intergenic 45.0%
CTTCATCTGTAGGGTGGAAT+CGG + chr1_2:62678531-62678550 None:intergenic 45.0%
GCGAGATAATCGAAGCAAGA+GGG + chr1_2:62678598-62678617 None:intergenic 45.0%
AGCGAGATAATCGAAGCAAG+AGG + chr1_2:62678599-62678618 None:intergenic 45.0%
GATGTCGAAGCTGAAGACAA+AGG - chr1_2:62678765-62678784 Msa0083580:CDS 45.0%
ATGGTACTTCTTCACTGCGT+TGG - chr1_2:62678795-62678814 Msa0083580:CDS 45.0%
ACTGCGTTGGACAAGAAGTA+TGG - chr1_2:62678808-62678827 Msa0083580:CDS 45.0%
! ACGAATCGTGCTACTGATAG+AGG - chr1_2:62678844-62678863 Msa0083580:CDS 45.0%
TTATTGGAAGACTACCGGCA+AGG - chr1_2:62678867-62678886 Msa0083580:CDS 45.0%
TCGTGCTATCAAGAATGGAG+AGG - chr1_2:62678891-62678910 Msa0083580:CDS 45.0%
AAGAATGGAGAGGAGACTGT+TGG - chr1_2:62678901-62678920 Msa0083580:CDS 45.0%
CAATTGCTTCGATCACCATG+TGG + chr1_2:62678964-62678983 None:intergenic 45.0%
CACATGGTGATCGAAGCAAT+TGG - chr1_2:62678962-62678981 Msa0083580:CDS 45.0%
GATGAGACTTTAGCCAAAGC+TGG - chr1_2:62679009-62679028 Msa0083580:CDS 45.0%
TAATACCTGCACTCCAGCTT+TGG + chr1_2:62679025-62679044 None:intergenic 45.0%
AGGATGCTTATGTCCTGTGT+AGG - chr1_2:62679214-62679233 Msa0083580:intron 45.0%
!! TTTTCGAGAAGAGTGGTTCG+GGG - chr1_2:62679238-62679257 Msa0083580:CDS 45.0%
CCTAAGAATGGGGAGAAGTA+CGG - chr1_2:62679261-62679280 Msa0083580:CDS 45.0%
! CTAAGAATGGGGAGAAGTAC+GGG - chr1_2:62679262-62679281 Msa0083580:CDS 45.0%
! TAAGAATGGGGAGAAGTACG+GGG - chr1_2:62679263-62679282 Msa0083580:CDS 45.0%
TCCCTTTGTTGAGGAGGAAT+GGG - chr1_2:62679287-62679306 Msa0083580:CDS 45.0%
TCCCATTCCTCCTCAACAAA+GGG + chr1_2:62679291-62679310 None:intergenic 45.0%
! GAGGAGGAATGGGAGAATTT+TGG - chr1_2:62679297-62679316 Msa0083580:CDS 45.0%
TCATTATCAACAGGCGGCAA+GGG + chr1_2:62679336-62679355 None:intergenic 45.0%
TTCATTATCAACAGGCGGCA+AGG + chr1_2:62679337-62679356 None:intergenic 45.0%
TGATGAACTCGTGAATCCCT+TGG - chr1_2:62679389-62679408 Msa0083580:intron 45.0%
TCAGGTACAGAAACTGCCAA+GGG + chr1_2:62679408-62679427 None:intergenic 45.0%
ATCAGGTACAGAAACTGCCA+AGG + chr1_2:62679409-62679428 None:intergenic 45.0%
! TGTACCTGATGATGTACTGG+TGG - chr1_2:62679419-62679438 Msa0083580:intron 45.0%
TGTGCCTGATTCTACTTACG+AGG - chr1_2:62679482-62679501 Msa0083580:CDS 45.0%
AGCACTTCCAACTGTGTTAC+TGG + chr1_2:62679966-62679985 None:intergenic 45.0%
TGCTTGGGAATACTGAGGAT+GGG + chr1_2:62680026-62680045 None:intergenic 45.0%
ATGCTTGGGAATACTGAGGA+TGG + chr1_2:62680027-62680046 None:intergenic 45.0%
GTGCAAGATGGATACAATGG+TGG - chr1_2:62680151-62680170 Msa0083580:intron 45.0%
TCTAGCATTGCAGCAACAGA+AGG + chr1_2:62680334-62680353 None:intergenic 45.0%
ATGATAGGCTGTCCATAGCT+GGG + chr1_2:62680445-62680464 None:intergenic 45.0%
AATGATAGGCTGTCCATAGC+TGG + chr1_2:62680446-62680465 None:intergenic 45.0%
GCCTATCATTGAGCAGGTTA+TGG - chr1_2:62680456-62680475 Msa0083580:CDS 45.0%
TTGGGGTCATTGACAGAATG+TGG - chr1_2:62680541-62680560 Msa0083580:CDS 45.0%
GGTCATTGACAGAATGTGGA+GGG - chr1_2:62680545-62680564 Msa0083580:CDS 45.0%
CTGTAACCTGAGACCCAATT+TGG + chr1_2:62680659-62680678 None:intergenic 45.0%
GAAGCATGCCAATAGGTTGT+TGG - chr1_2:62680821-62680840 Msa0083580:intron 45.0%
AACTCTGATGCAAATGCAGG+TGG + chr1_2:62680861-62680880 None:intergenic 45.0%
GGAAACTCTGATGCAAATGC+AGG + chr1_2:62680864-62680883 None:intergenic 45.0%
TGCATCAGAGTTTCCTGCTA+AGG - chr1_2:62680869-62680888 Msa0083580:CDS 45.0%
AGAGTTTCCTGCTAAGGAGT+TGG - chr1_2:62680875-62680894 Msa0083580:CDS 45.0%
AATTGGATGACTCAGCTGCA+GGG + chr1_2:62680914-62680933 None:intergenic 45.0%
TTAGAGGCAATGCGATGGAT+TGG - chr1_2:62680979-62680998 Msa0083580:CDS 45.0%
!! GATTGGATGGTGGACAAGAA+TGG - chr1_2:62680996-62681015 Msa0083580:CDS 45.0%
!! GCTACTTTGGTGCCTATTTC+TGG - chr1_2:62681071-62681090 Msa0083580:CDS 45.0%
!! TTTGGTGCCTATTTCTGGCT+TGG - chr1_2:62681076-62681095 Msa0083580:CDS 45.0%
CTACAGACCAAGCCAGAAAT+AGG + chr1_2:62681086-62681105 None:intergenic 45.0%
GAGAACGATGCTTAACTGAC+TGG + chr1_2:62681246-62681265 None:intergenic 45.0%
GAAGGAACCGCTTTCTACCA+AGG - chr1_2:62678496-62678515 Msa0083580:three_prime_UTR 50.0%
! CTTGATAGCACGATCCTTGC+CGG + chr1_2:62678884-62678903 None:intergenic 50.0%
TTTAGCCAAAGCTGGAGTGC+AGG - chr1_2:62679017-62679036 Msa0083580:CDS 50.0%
CCGTACTTCTCCCCATTCTT+AGG + chr1_2:62679264-62679283 None:intergenic 50.0%
CTCCCTTTGTTGAGGAGGAA+TGG - chr1_2:62679286-62679305 Msa0083580:CDS 50.0%
CTCCCATTCCTCCTCAACAA+AGG + chr1_2:62679292-62679311 None:intergenic 50.0%
GGATCCACCAGTACATCATC+AGG + chr1_2:62679426-62679445 None:intergenic 50.0%
! TGATGTACTGGTGGATCCCT+TGG - chr1_2:62679428-62679447 Msa0083580:intron 50.0%
TGAAACCCATGACCTCGATC+AGG - chr1_2:62679512-62679531 Msa0083580:CDS 50.0%
TGGAAACATCGTCGTCGTCA+GGG + chr1_2:62680372-62680391 None:intergenic 50.0%
TTGGAAACATCGTCGTCGTC+AGG + chr1_2:62680373-62680392 None:intergenic 50.0%
TGGACAGCCTATCATTGAGC+AGG - chr1_2:62680450-62680469 Msa0083580:CDS 50.0%
GGGTCATTGACAGAATGTGG+AGG - chr1_2:62680544-62680563 Msa0083580:CDS 50.0%
AATGTGGAGGGCGAAACCTA+TGG - chr1_2:62680557-62680576 Msa0083580:CDS 50.0%
AGGATCTAGCAGCGCCAAAT+TGG - chr1_2:62680642-62680661 Msa0083580:CDS 50.0%
GGATCTAGCAGCGCCAAATT+GGG - chr1_2:62680643-62680662 Msa0083580:CDS 50.0%
!! CTGCTAAGGAGTTGGCTTGT+GGG - chr1_2:62680883-62680902 Msa0083580:CDS 50.0%
GAATTGGATGACTCAGCTGC+AGG + chr1_2:62680915-62680934 None:intergenic 50.0%
!! AGGCAATGCGATGGATTGGA+TGG - chr1_2:62680983-62681002 Msa0083580:CDS 50.0%
!! CAATGCGATGGATTGGATGG+TGG - chr1_2:62680986-62681005 Msa0083580:CDS 50.0%
!! TGGATGGTGGACAAGAATGG+AGG - chr1_2:62680999-62681018 Msa0083580:CDS 50.0%
ACCGCTTTCTACCAAGGTCC+TGG - chr1_2:62678502-62678521 Msa0083580:three_prime_UTR 55.0%
CCCAGGACCTTGGTAGAAAG+CGG + chr1_2:62678506-62678525 None:intergenic 55.0%
CCGCTTTCTACCAAGGTCCT+GGG - chr1_2:62678503-62678522 Msa0083580:three_prime_UTR 55.0%
GACATACTGGGAAGGTCCCA+TGG + chr1_2:62678646-62678665 None:intergenic 55.0%
! AGTGGTTCGGGGCCTAAGAA+TGG - chr1_2:62679249-62679268 Msa0083580:CDS 55.0%
! GTGGTTCGGGGCCTAAGAAT+GGG - chr1_2:62679250-62679269 Msa0083580:CDS 55.0%
! TGGTTCGGGGCCTAAGAATG+GGG - chr1_2:62679251-62679270 Msa0083580:CDS 55.0%
GCGAACCTGATCGAGGTCAT+GGG + chr1_2:62679520-62679539 None:intergenic 55.0%
ATGCAACGCGAACCTGATCG+AGG + chr1_2:62679527-62679546 None:intergenic 55.0%
GAAAGCCCCATTCCCAGCTA+TGG - chr1_2:62680430-62680449 Msa0083580:CDS 55.0%
GCTGTCCATAGCTGGGAATG+GGG + chr1_2:62680438-62680457 None:intergenic 55.0%
GGCTGTCCATAGCTGGGAAT+GGG + chr1_2:62680439-62680458 None:intergenic 55.0%
AGGCTGTCCATAGCTGGGAA+TGG + chr1_2:62680440-62680459 None:intergenic 55.0%
TGCAGGTGGAGCAGGTATGT+TGG + chr1_2:62680847-62680866 None:intergenic 55.0%
GATGCAAATGCAGGTGGAGC+AGG + chr1_2:62680855-62680874 None:intergenic 55.0%
CCACAAGCCAACTCCTTAGC+AGG + chr1_2:62680885-62680904 None:intergenic 55.0%
!! CCTGCTAAGGAGTTGGCTTG+TGG - chr1_2:62680882-62680901 Msa0083580:CDS 55.0%
GGAATCGGAACCCAGGACCT+TGG + chr1_2:62678516-62678535 None:intergenic 60.0%
GTAGGGTGGAATCGGAACCC+AGG + chr1_2:62678523-62678542 None:intergenic 60.0%
GTACGGGGCTCCCTTTGTTG+AGG - chr1_2:62679278-62679297 Msa0083580:CDS 60.0%
CGCGAACCTGATCGAGGTCA+TGG + chr1_2:62679521-62679540 None:intergenic 60.0%
GGCGCTGCTAGATCCTCCTT+TGG + chr1_2:62680638-62680657 None:intergenic 60.0%
GCAGCGCCAAATTGGGTCTC+AGG - chr1_2:62680650-62680669 Msa0083580:CDS 60.0%
CACTTGGGTCGGGCTCCACA+TGG - chr1_2:62678946-62678965 Msa0083580:CDS 65.0%
CGGGGCTCCCTTTGTTGAGG+AGG - chr1_2:62679281-62679300 Msa0083580:CDS 65.0%
CGTCGTCGTCAGGGCATGCA+AGG + chr1_2:62680363-62680382 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 62678338 62681564 62678338 ID=Msa0083580;Name=Msa0083580
chr1_2 mRNA 62678338 62681564 62678338 ID=Msa0083580-mRNA-1;Parent=Msa0083580;Name=Msa0083580-mRNA-1;_AED=0.13;_eAED=0.13;_QI=155|0.8|0.83|1|1|1|6|350|611
chr1_2 exon 62678338 62679100 62678338 ID=Msa0083580-mRNA-1:exon:20898;Parent=Msa0083580-mRNA-1
chr1_2 exon 62679231 62679345 62679231 ID=Msa0083580-mRNA-1:exon:20897;Parent=Msa0083580-mRNA-1
chr1_2 exon 62679431 62679949 62679431 ID=Msa0083580-mRNA-1:exon:20896;Parent=Msa0083580-mRNA-1
chr1_2 exon 62680369 62680716 62680369 ID=Msa0083580-mRNA-1:exon:20895;Parent=Msa0083580-mRNA-1
chr1_2 exon 62680864 62681138 62680864 ID=Msa0083580-mRNA-1:exon:20894;Parent=Msa0083580-mRNA-1
chr1_2 exon 62681244 62681564 62681244 ID=Msa0083580-mRNA-1:exon:20893;Parent=Msa0083580-mRNA-1
chr1_2 five_prime_UTR 62681410 62681564 62681410 ID=Msa0083580-mRNA-1:five_prime_utr;Parent=Msa0083580-mRNA-1
chr1_2 CDS 62681244 62681409 62681244 ID=Msa0083580-mRNA-1:cds;Parent=Msa0083580-mRNA-1
chr1_2 CDS 62680864 62681138 62680864 ID=Msa0083580-mRNA-1:cds;Parent=Msa0083580-mRNA-1
chr1_2 CDS 62680369 62680716 62680369 ID=Msa0083580-mRNA-1:cds;Parent=Msa0083580-mRNA-1
chr1_2 CDS 62679431 62679949 62679431 ID=Msa0083580-mRNA-1:cds;Parent=Msa0083580-mRNA-1
chr1_2 CDS 62679231 62679345 62679231 ID=Msa0083580-mRNA-1:cds;Parent=Msa0083580-mRNA-1
chr1_2 CDS 62678688 62679100 62678688 ID=Msa0083580-mRNA-1:cds;Parent=Msa0083580-mRNA-1
chr1_2 three_prime_UTR 62678338 62678687 62678338 ID=Msa0083580-mRNA-1:three_prime_utr;Parent=Msa0083580-mRNA-1
Gene Sequence

>Msa0083580

ATGGAAGGAACCGCTTTCTACCAAGGTCCTGGGTTCCGATTCCACCCTACAGATGAAGAAATTGTTCGTTACTACCTTAAGAAAAAACTCACCGGAAATTTACCCTCTTGCTTCGATTATCTCGCTGTCATCGACATCTACAAATTCGAGCCATGGGACCTTCCCAAGATGTCGAAGCTGAAGACAAAGGATTTGGAATGGTACTTCTTCACTGCGTTGGACAAGAAGTATGGTAATAGTATCAGGACGAATCGTGCTACTGATAGAGGTTATTGGAAGACTACCGGCAAGGATCGTGCTATCAAGAATGGAGAGGAGACTGTTGGAATGAAGAAGACACTTGTTTATCACTTGGGTCGGGCTCCACATGGTGATCGAAGCAATTGGGTCATGCATGAGTATAGGATGATTGATGAGACTTTAGCCAAAGCTGGAGTGCAGATGAGATTTGTGTTTGTTTTGGTGGAGAAGGATGCTTATGTCCTGTGTAGGATTTTCGAGAAGAGTGGTTCGGGGCCTAAGAATGGGGAGAAGTACGGGGCTCCCTTTGTTGAGGAGGAATGGGAGAATTTTGGTGAACAAGTGCTACCCTTGCCGCCTGTTGATAATGAACCTTTGAAACTAGAAGGGTTTACTCCTGATGTTGATGAACTCGTGAATCCCTTGGCAGTTTCTGTACCTGATGATGTACTGGTGGATCCCTTGGATGCTTTTTATGACGAGCTTTGGAAAGAAAATGTGCCTGATTCTACTTACGAGGACTTTTTTGAAACCCATGACCTCGATCAGGATATTGATACCAGTAACACAGTTGGAAGTGCTGAACTTCAATCCAACTTCTGTTATGGAGAGTGTAGTACCCATCCTCAGTATTCCCAAGCATTTATTAATGAACGTAAGCAATTGGAAGCCACTCTTGATATGTATGAACATGAGGTTGATCAGCCTAATAATATATCTGATCTATATGGTGGGAATATCAATTCAGTGCAAGATGGATACAATGGTGGGACAAACCATAACGAAAATCCTTTGAATTTCAATTTTGCATCTGAGGAACTGGATCAATTCTTTGATCCCCCTGATTATCTTACTGATTTGACTGATGAGTACTTGGAAGCCAATGATATTAAGAATCGTGATGAGTTTGTTCCCACTGAGATTGATCCTTCTGTTGCTGCAATGCTAGATGAGTACCTTGCATGCCCTGACGACGACGATGTTTCCAAATATATATGCTTGGATTCTCCTTTGAATGCAAGGAGTGAAAGCCCCATTCCCAGCTATGGACAGCCTATCATTGAGCAGAATGTGGAGGGCGAAACCTATGGTAGTTCCTTGACAAACAAACATGTTTTTGAAGCACAATCTTGTCATGAAGATTTACCAAAGGAGGATCTAGCAGCGCCAAATTGGGTCTCAGGAGATGCAAACACTTTTGTGAAGCATGCCAATAGGTTGTTGGCCAACATACCTGCTCCACCTGCATTTGCATCAGAGTTTCCTGCTAAGGAGTTGGCTTGTGGGACACACCCTGCAGCTGAGTCATCCAATTCAGCTCATATAACTGCAGGTATGATCAGCATTACAGACATTACTTTTAGAGGCAATGCGATGGATTGGATGGTGGACAAGAATGGAGGTTTTAACACCGTTATGTCTACTGGGTTTTCCCAAACTGATGTTAACTCTGCTACTTTGGTGCCTATTTCTGGCTTGGTCTGTAGCAAAACTGCATTTATGTTATCACATGGTTGGGTTTTCTTGATGGGTTTCTCAGTTGTGATCCTTTCACTGAGTTTCAAGATCGGAAGCTTCATGTATACGGGTAAATGA
Protein sequence

>Msa0083580

MEGTAFYQGPGFRFHPTDEEIVRYYLKKKLTGNLPSCFDYLAVIDIYKFEPWDLPKMSKLKTKDLEWYFFTALDKKYGNSIRTNRATDRGYWKTTGKDRAIKNGEETVGMKKTLVYHLGRAPHGDRSNWVMHEYRMIDETLAKAGVQMRFVFVLVEKDAYVLCRIFEKSGSGPKNGEKYGAPFVEEEWENFGEQVLPLPPVDNEPLKLEGFTPDVDELVNPLAVSVPDDVLVDPLDAFYDELWKENVPDSTYEDFFETHDLDQDIDTSNTVGSAELQSNFCYGECSTHPQYSQAFINERKQLEATLDMYEHEVDQPNNISDLYGGNINSVQDGYNGGTNHNENPLNFNFASEELDQFFDPPDYLTDLTDEYLEANDIKNRDEFVPTEIDPSVAAMLDEYLACPDDDDVSKYICLDSPLNARSESPIPSYGQPIIEQNVEGETYGSSLTNKHVFEAQSCHEDLPKEDLAAPNWVSGDANTFVKHANRLLANIPAPPAFASEFPAKELACGTHPAAESSNSAHITAGMISITDITFRGNAMDWMVDKNGGFNTVMSTGFSQTDVNSATLVPISGLVCSKTAFMLSHGWVFLMGFSVVILSLSFKIGSFMYTGK*