AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0085490

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0085490 MtrunA17_Chr1g0201021 97.723 571 13 0 1 571 1 571 0.0 1167
Msa0085490 MtrunA17_Chr3g0130101 51.759 199 91 1 13 211 1 194 1.26e-68 226
Msa0085490 MtrunA17_Chr8g0364791 56.000 175 77 0 20 194 7 181 6.15e-67 224
Msa0085490 MtrunA17_Chr8g0384201 54.857 175 79 0 20 194 7 181 2.81e-65 221
Msa0085490 MtrunA17_Chr6g0481091 59.006 161 66 0 21 181 8 168 1.01e-60 201
Msa0085490 MtrunA17_Chr5g0433781 61.728 162 61 1 21 181 8 169 1.24e-60 212
Msa0085490 MtrunA17_Chr3g0092671 37.607 351 166 8 21 339 7 336 1.23e-59 207
Msa0085490 MtrunA17_Chr3g0109821 60.494 162 62 2 21 180 8 169 4.12e-59 208
Msa0085490 MtrunA17_Chr1g0197361 55.882 170 73 2 21 189 10 178 5.97e-58 203
Msa0085490 MtrunA17_Chr2g0309891 58.065 155 64 1 17 170 4 158 6.13e-58 197
Msa0085490 MtrunA17_Chr1g0197351 56.111 180 72 2 18 191 41 219 2.16e-57 199
Msa0085490 MtrunA17_Chr5g0400461 56.410 156 58 2 21 169 8 160 7.07e-53 183
Msa0085490 MtrunA17_Chr4g0054791 56.579 152 63 1 21 169 8 159 1.91e-52 181
Msa0085490 MtrunA17_Chr3g0128111 51.534 163 75 1 8 170 35 193 4.58e-52 178
Msa0085490 MtrunA17_Chr3g0128151 52.601 173 79 2 1 170 1 173 2.04e-50 183
Msa0085490 MtrunA17_Chr5g0428991 49.714 175 82 1 1 169 1 175 5.92e-48 177
Msa0085490 MtrunA17_Chr4g0018391 49.333 150 73 2 21 169 9 156 3.49e-47 168
Msa0085490 MtrunA17_Chr2g0309331 47.682 151 75 3 21 169 12 160 8.84e-46 164
Msa0085490 MtrunA17_Chr8g0372121 41.500 200 104 5 21 219 8 195 1.03e-45 163
Msa0085490 MtrunA17_Chr5g0405211 52.672 131 61 1 21 150 10 140 1.16e-45 164
Msa0085490 MtrunA17_Chr4g0060931 47.853 163 81 2 15 175 13 173 2.50e-45 164
Msa0085490 MtrunA17_Chr2g0316971 51.266 158 69 4 21 173 25 179 2.82e-45 164
Msa0085490 MtrunA17_Chr4g0056541 46.067 178 85 6 21 194 9 179 3.09e-45 163
Msa0085490 MtrunA17_Chr4g0017921 49.333 150 72 2 21 169 10 156 1.05e-44 162
Msa0085490 MtrunA17_Chr3g0091921 49.045 157 76 2 21 175 18 172 1.07e-44 160
Msa0085490 MtrunA17_Chr6g0461661 45.055 182 89 6 22 197 21 197 1.30e-44 162
Msa0085490 MtrunA17_Chr5g0417791 47.134 157 77 2 17 169 1 155 1.63e-44 158
Msa0085490 MtrunA17_Chr6g0453131 50.000 162 67 5 20 170 16 174 1.80e-44 162
Msa0085490 MtrunA17_Chr5g0398971 47.682 151 76 3 21 169 9 158 1.86e-44 161
Msa0085490 MtrunA17_Chr2g0318081 45.283 159 85 1 17 175 14 170 2.51e-44 160
Msa0085490 MtrunA17_Chr8g0361731 47.024 168 72 5 15 170 12 174 3.79e-44 161
Msa0085490 MtrunA17_Chr1g0200561 48.750 160 75 3 21 177 21 176 4.34e-44 160
Msa0085490 MtrunA17_Chr4g0042561 46.497 157 78 2 21 173 11 165 5.66e-44 157
Msa0085490 MtrunA17_Chr4g0076731 50.327 153 71 3 20 171 55 203 6.32e-44 162
Msa0085490 MtrunA17_Chr7g0252971 46.012 163 73 4 21 170 10 170 1.42e-43 158
Msa0085490 MtrunA17_Chr6g0453451 49.367 158 74 4 21 175 22 176 1.44e-43 158
Msa0085490 MtrunA17_Chr3g0139331 50.955 157 71 3 21 175 13 165 1.63e-43 158
Msa0085490 MtrunA17_Chr5g0417001 45.963 161 75 3 20 170 15 173 1.92e-43 159
Msa0085490 MtrunA17_Chr3g0124761 49.351 154 72 3 21 171 9 159 2.16e-43 156
Msa0085490 MtrunA17_Chr6g0484441 48.667 150 73 2 21 170 7 152 5.28e-43 156
Msa0085490 MtrunA17_Chr2g0318101 48.980 147 71 2 6 150 2 146 5.53e-43 157
Msa0085490 MtrunA17_Chr7g0253011 47.771 157 72 4 21 170 19 172 1.39e-42 157
Msa0085490 MtrunA17_Chr8g0384721 41.414 198 109 4 21 214 9 203 2.06e-42 154
Msa0085490 MtrunA17_Chr4g0047841 53.030 132 58 2 21 150 17 146 2.29e-42 155
Msa0085490 MtrunA17_Chr8g0346001 49.231 130 65 1 21 149 17 146 2.48e-42 157
Msa0085490 MtrunA17_Chr4g0038751 48.387 155 70 4 19 170 15 162 2.56e-42 154
Msa0085490 MtrunA17_Chr8g0359921 46.795 156 79 3 17 170 12 165 4.46e-42 154
Msa0085490 MtrunA17_Chr3g0130731 48.701 154 73 3 21 171 9 159 4.93e-42 152
Msa0085490 MtrunA17_Chr2g0326361 49.635 137 65 2 21 155 16 150 1.63e-41 152
Msa0085490 MtrunA17_Chr1g0147421 50.314 159 70 5 21 175 29 182 2.92e-41 152
Msa0085490 MtrunA17_Chr7g0214071 48.171 164 70 5 21 179 17 170 9.14e-41 148
Msa0085490 MtrunA17_Chr7g0263931 43.312 157 81 3 21 171 13 167 1.45e-39 147
Msa0085490 MtrunA17_Chr3g0144271 53.425 146 58 6 21 159 25 167 2.26e-39 149
Msa0085490 MtrunA17_Chr7g0217721 51.538 130 61 1 22 151 22 149 3.89e-39 146
Msa0085490 MtrunA17_Chr7g0217711 51.587 126 59 1 22 147 22 145 5.04e-39 140
Msa0085490 MtrunA17_Chr5g0442771 34.201 269 141 10 20 276 19 263 3.41e-38 143
Msa0085490 MtrunA17_Chr2g0311651 42.169 166 80 4 20 170 23 187 6.77e-38 142
Msa0085490 MtrunA17_Chr2g0311661 48.855 131 62 2 20 146 22 151 3.81e-37 139
Msa0085490 MtrunA17_Chr1g0183741 45.033 151 75 3 21 169 12 156 3.66e-36 136
Msa0085490 MtrunA17_Chr2g0312321 51.181 127 58 3 21 147 13 135 4.05e-36 137
Msa0085490 MtrunA17_Chr2g0321741 53.333 120 52 2 39 155 12 130 1.17e-35 137
Msa0085490 MtrunA17_Chr8g0345671 53.968 126 54 3 22 144 14 138 4.72e-35 136
Msa0085490 MtrunA17_Chr7g0261411 44.966 149 74 3 21 167 12 154 6.21e-35 133
Msa0085490 MtrunA17_Chr8g0345711 47.794 136 66 4 13 144 5 139 1.48e-33 125
Msa0085490 MtrunA17_Chr8g0345691 47.368 152 70 6 13 155 5 155 3.78e-33 131
Msa0085490 MtrunA17_Chr8g0385991 47.656 128 61 2 21 146 16 139 2.31e-31 121
Msa0085490 MtrunA17_Chr3g0131911 40.719 167 85 3 21 177 16 178 3.89e-31 121
Msa0085490 MtrunA17_Chr3g0113001 38.150 173 73 5 71 215 15 181 1.84e-30 120
Msa0085490 MtrunA17_Chr7g0266701 42.236 161 81 6 21 170 6 165 4.14e-30 119
Msa0085490 MtrunA17_Chr8g0345731 45.736 129 63 5 22 144 27 154 2.98e-28 111
Msa0085490 MtrunA17_Chr2g0321631 39.752 161 89 5 19 171 4 164 1.82e-27 111
Msa0085490 MtrunA17_Chr8g0345741 44.915 118 61 3 30 144 2 118 9.36e-27 106
Msa0085490 MtrunA17_Chr4g0026141 44.961 129 65 4 21 144 7 134 2.71e-25 105
Msa0085490 MtrunA17_Chr3g0113031 49.038 104 46 3 84 181 3 105 3.96e-25 105
Msa0085490 MtrunA17_Chr8g0345721 36.774 155 65 4 22 144 38 191 2.53e-24 101
Msa0085490 MtrunA17_Chr8g0345701 41.892 148 65 6 15 144 2 146 4.77e-24 99.4
Msa0085490 MtrunA17_Chr4g0050701 39.062 128 66 4 21 146 13 130 1.60e-22 95.5
Msa0085490 MtrunA17_Chr7g0243371 39.394 99 58 1 74 170 17 115 8.45e-19 82.4
Msa0085490 MtrunA17_Chr7g0251651 31.361 169 106 5 3 168 2 163 2.37e-16 77.8
Msa0085490 MtrunA17_Chr7g0251661 31.746 126 82 3 22 146 13 135 9.77e-16 75.1
Msa0085490 MtrunA17_Chr8g0384351 33.333 126 66 5 21 146 12 119 3.15e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0085490 AT1G34190.1 42.953 596 267 19 4 569 1 553 1.95e-138 413
Msa0085490 AT1G34180.1 41.809 586 289 20 6 567 3 560 7.08e-126 381
Msa0085490 AT1G34180.2 40.970 598 289 21 6 567 3 572 2.09e-122 373
Msa0085490 AT1G34180.3 42.275 466 226 15 6 449 3 447 7.87e-100 310
Msa0085490 AT1G34180.4 41.213 478 226 16 6 449 3 459 2.57e-96 301
Msa0085490 AT1G32870.1 37.699 565 282 16 21 567 12 524 9.12e-86 276
Msa0085490 AT1G32870.3 37.699 565 282 16 21 567 48 560 5.20e-85 275
Msa0085490 AT5G09330.5 40.525 343 166 7 21 339 8 336 7.46e-72 238
Msa0085490 AT5G09330.2 40.525 343 166 7 21 339 8 336 7.46e-72 238
Msa0085490 AT5G09330.4 40.525 343 166 7 21 339 8 336 7.46e-72 238
Msa0085490 AT5G09330.3 40.525 343 166 7 21 339 8 336 7.46e-72 238
Msa0085490 AT5G09330.1 40.525 343 166 7 21 339 8 336 7.46e-72 238
Msa0085490 AT5G04410.1 58.333 180 75 0 16 195 6 185 2.51e-69 234
Msa0085490 AT5G64060.1 54.971 171 77 0 21 191 8 178 3.29e-66 219
Msa0085490 AT3G10500.1 59.763 169 68 0 16 184 6 174 8.22e-65 221
Msa0085490 AT3G10480.2 46.154 260 128 6 1 250 6 263 3.98e-64 217
Msa0085490 AT3G10480.1 45.977 261 128 7 1 250 6 264 5.78e-63 214
Msa0085490 AT3G10490.1 55.026 189 82 3 7 193 14 201 1.49e-61 203
Msa0085490 AT1G65910.1 59.172 169 69 0 17 185 4 172 2.41e-61 214
Msa0085490 AT3G17730.1 61.589 151 58 0 21 171 8 158 7.28e-61 202
Msa0085490 AT3G10490.2 47.863 234 113 4 7 238 14 240 1.16e-60 208
Msa0085490 AT5G17260.1 60.000 150 59 1 21 169 8 157 9.13e-58 201
Msa0085490 AT3G03200.1 60.667 150 58 1 21 169 8 157 3.89e-57 199
Msa0085490 AT3G10480.3 43.580 257 104 5 1 217 6 261 1.17e-55 196
Msa0085490 AT1G54330.1 56.604 159 66 1 17 175 4 159 1.68e-52 181
Msa0085490 AT1G33060.1 56.494 154 66 1 17 169 21 174 2.79e-51 187
Msa0085490 AT1G33060.2 56.494 154 66 1 17 169 21 174 3.34e-51 186
Msa0085490 AT5G46590.1 53.289 152 69 2 21 170 8 159 6.07e-51 177
Msa0085490 AT4G35580.1 54.118 170 66 2 1 169 1 159 1.25e-50 182
Msa0085490 AT4G35580.2 54.118 170 66 2 1 169 1 159 1.71e-50 182
Msa0085490 AT4G35580.3 54.118 170 66 2 1 169 1 159 1.75e-50 182
Msa0085490 AT1G32510.1 54.430 158 64 2 21 170 8 165 2.81e-50 175
Msa0085490 AT4G17980.1 55.556 153 64 2 21 169 8 160 5.16e-50 174
Msa0085490 AT5G46590.2 55.319 141 61 2 21 159 8 148 7.25e-50 174
Msa0085490 AT4G17980.2 55.195 154 65 2 21 170 8 161 1.46e-49 173
Msa0085490 AT5G24590.2 53.548 155 70 2 17 169 10 164 2.66e-48 174
Msa0085490 AT3G49530.2 44.776 201 99 3 17 215 10 200 2.73e-48 173
Msa0085490 AT2G27300.1 53.289 152 67 2 7 155 2 152 5.21e-48 171
Msa0085490 AT3G49530.1 44.776 201 99 3 17 215 10 200 9.87e-48 173
Msa0085490 AT1G62700.1 44.134 179 89 5 21 194 9 181 1.07e-47 171
Msa0085490 AT1G62700.2 44.134 179 89 5 21 194 9 181 1.07e-47 171
Msa0085490 AT3G44290.2 52.448 143 64 2 16 155 11 152 1.59e-47 166
Msa0085490 AT5G22290.1 49.045 157 75 2 3 155 5 160 5.14e-47 168
Msa0085490 AT2G18060.3 44.211 190 97 4 15 202 5 187 5.38e-47 169
Msa0085490 AT2G18060.1 44.211 190 97 4 15 202 5 187 5.38e-47 169
Msa0085490 AT3G44290.1 36.713 286 149 9 16 285 11 280 5.63e-47 168
Msa0085490 AT4G36160.2 49.669 151 70 2 1 150 1 146 7.59e-47 169
Msa0085490 AT1G12260.1 35.385 260 135 8 21 256 9 259 2.28e-46 168
Msa0085490 AT1G33280.1 50.667 150 70 2 21 169 10 156 3.36e-46 165
Msa0085490 AT1G12260.2 48.684 152 71 3 21 169 9 156 3.55e-46 166
Msa0085490 AT4G36160.1 53.435 131 60 1 21 150 12 142 4.47e-46 166
Msa0085490 AT4G36160.3 53.435 131 60 1 21 150 12 142 4.47e-46 166
Msa0085490 AT1G69490.1 44.615 195 99 5 21 211 11 200 5.68e-46 163
Msa0085490 AT5G66300.1 46.951 164 85 2 21 183 14 176 8.08e-46 163
Msa0085490 AT4G27410.2 47.403 154 79 1 17 170 12 163 9.41e-46 163
Msa0085490 AT5G07680.1 47.853 163 81 2 15 175 13 173 1.08e-45 164
Msa0085490 AT4G10350.1 48.667 150 76 1 21 169 11 160 1.62e-45 164
Msa0085490 AT5G07680.2 47.826 161 80 2 17 175 1 159 1.86e-45 163
Msa0085490 AT5G61430.1 47.853 163 81 2 15 175 12 172 2.37e-45 163
Msa0085490 AT5G39820.1 51.049 143 64 3 6 146 9 147 1.07e-44 162
Msa0085490 AT1G01720.1 44.865 185 89 5 13 188 1 181 1.12e-44 160
Msa0085490 AT5G62380.2 53.435 131 60 1 21 150 9 139 1.17e-44 162
Msa0085490 AT5G62380.1 53.435 131 60 1 21 150 9 139 1.17e-44 162
Msa0085490 AT5G39610.1 50.000 160 70 3 21 175 22 176 1.31e-44 160
Msa0085490 AT1G71930.2 44.444 180 85 5 16 191 5 173 1.41e-44 161
Msa0085490 AT1G71930.1 44.444 180 85 5 16 191 5 173 1.41e-44 161
Msa0085490 AT3G15500.1 47.059 153 79 1 17 169 12 162 3.71e-44 159
Msa0085490 AT1G79580.3 47.097 155 77 3 17 169 15 166 5.96e-44 160
Msa0085490 AT1G79580.5 47.097 155 77 3 17 169 15 166 5.96e-44 160
Msa0085490 AT1G79580.4 47.097 155 77 3 17 169 15 166 5.96e-44 160
Msa0085490 AT1G79580.2 47.097 155 77 3 17 169 15 166 5.96e-44 160
Msa0085490 AT1G79580.1 47.097 155 77 3 17 169 15 166 5.96e-44 160
Msa0085490 AT5G18270.1 36.948 249 126 7 15 250 17 247 1.03e-43 159
Msa0085490 AT3G29035.1 46.552 174 85 3 14 183 19 188 1.12e-43 158
Msa0085490 AT5G18270.2 36.948 249 126 7 15 250 17 247 1.17e-43 159
Msa0085490 AT3G04060.1 48.780 164 73 4 15 172 16 174 1.17e-43 159
Msa0085490 AT2G17040.1 50.649 154 66 4 20 170 7 153 2.07e-43 156
Msa0085490 AT1G52890.1 45.283 159 85 1 17 175 12 168 3.98e-43 157
Msa0085490 AT4G27410.3 43.787 169 80 1 17 170 12 180 7.09e-43 156
Msa0085490 AT2G02450.1 48.366 153 74 3 20 171 52 200 1.04e-42 157
Msa0085490 AT2G24430.2 50.327 153 69 4 21 170 18 166 1.05e-42 155
Msa0085490 AT2G24430.1 50.327 153 69 4 21 170 18 166 1.05e-42 155
Msa0085490 AT2G02450.2 48.366 153 74 3 20 171 52 200 1.38e-42 158
Msa0085490 AT1G77450.1 48.052 154 74 3 21 171 12 162 1.41e-42 153
Msa0085490 AT3G18400.1 46.452 155 80 2 21 175 7 158 1.46e-42 155
Msa0085490 AT2G43000.1 47.059 153 78 2 18 169 17 167 1.65e-42 154
Msa0085490 AT2G46770.1 46.667 150 76 2 1 149 1 147 1.66e-42 156
Msa0085490 AT1G61110.1 54.074 135 59 2 21 154 18 150 1.78e-42 155
Msa0085490 AT3G61910.1 49.275 138 68 2 21 156 13 150 2.10e-42 155
Msa0085490 AT1G76420.1 50.968 155 67 4 21 171 24 173 2.96e-42 155
Msa0085490 AT3G15170.1 51.282 156 68 4 21 171 22 174 3.40e-42 154
Msa0085490 AT1G32770.1 50.388 129 63 1 21 148 18 146 4.35e-42 155
Msa0085490 AT1G26870.1 46.626 163 72 4 20 170 17 176 4.40e-42 157
Msa0085490 AT5G63790.1 46.452 155 75 3 22 171 53 204 7.42e-42 153
Msa0085490 AT5G63790.2 46.452 155 75 3 22 171 63 214 9.37e-42 153
Msa0085490 AT5G53950.1 50.641 156 67 5 21 170 19 170 1.20e-41 154
Msa0085490 AT5G08790.1 47.097 155 74 3 22 171 10 161 1.62e-41 151
Msa0085490 AT5G13180.1 47.853 163 77 3 16 176 11 167 4.44e-41 149
Msa0085490 AT3G04070.2 42.593 162 79 4 21 170 12 171 4.82e-41 152
Msa0085490 AT3G15510.1 53.077 130 57 2 23 150 21 148 1.33e-40 151
Msa0085490 AT3G04070.1 48.092 131 61 2 21 146 12 140 2.85e-40 150
Msa0085490 AT2G33480.1 48.701 154 74 1 16 169 12 160 1.68e-39 145
Msa0085490 AT2G33480.2 48.701 154 72 2 16 169 12 158 3.37e-39 144
Msa0085490 AT3G12977.1 44.156 154 83 2 21 173 20 171 7.61e-38 141
Msa0085490 AT1G56010.2 41.765 170 93 3 21 186 21 188 3.66e-37 140
Msa0085490 AT5G04395.1 42.683 164 79 3 2 150 10 173 5.85e-35 130
Msa0085490 AT1G52880.1 46.250 160 72 3 23 170 21 178 9.46e-35 134
Msa0085490 AT3G12910.1 48.485 132 60 3 20 146 22 150 8.05e-34 130
Msa0085490 AT4G28530.1 42.604 169 69 6 21 169 12 172 1.15e-31 126
Msa0085490 AT5G61430.2 50.467 107 51 1 71 175 3 109 1.10e-30 121
Msa0085490 AT4G01550.1 38.857 175 94 5 16 183 1 169 1.83e-28 119
Msa0085490 AT3G44350.2 39.355 155 89 5 22 171 8 162 1.88e-28 114
Msa0085490 AT5G22380.1 40.764 157 86 6 22 171 8 164 7.01e-28 112
Msa0085490 AT3G44350.1 40.523 153 86 5 22 169 8 160 1.01e-27 109
Msa0085490 AT3G10490.4 44.521 146 73 3 94 238 2 140 2.27e-27 114
Msa0085490 AT3G10490.3 44.521 146 73 3 94 238 2 140 2.27e-27 114
Msa0085490 AT4G10350.2 45.918 98 53 0 72 169 16 113 9.03e-27 110
Msa0085490 AT1G56010.1 44.444 117 62 1 73 186 5 121 9.55e-27 109
Msa0085490 AT3G04420.2 40.800 125 72 1 22 144 6 130 3.19e-26 109
Msa0085490 AT3G12977.2 46.154 104 55 1 71 173 15 118 4.13e-26 107
Msa0085490 AT3G04420.1 40.800 125 72 1 22 144 6 130 1.15e-25 108
Msa0085490 AT4G01520.1 39.706 136 77 3 16 146 1 136 1.17e-24 105
Msa0085490 AT4G01540.3 39.706 136 77 3 16 146 1 136 2.04e-24 106
Msa0085490 AT4G01540.2 39.706 136 77 3 16 146 1 136 2.40e-24 106
Msa0085490 AT4G01540.1 39.706 136 77 3 16 146 1 136 2.73e-24 106
Msa0085490 AT4G01540.4 39.706 136 77 3 16 146 1 136 2.94e-24 105
Msa0085490 AT5G64530.2 39.552 134 65 5 17 148 1 120 6.69e-23 95.9
Msa0085490 AT5G64530.1 40.152 132 63 5 17 146 1 118 4.55e-22 94.4
Msa0085490 AT1G02230.1 40.625 128 68 3 22 144 6 130 1.12e-21 97.4
Msa0085490 AT1G02250.1 38.346 133 74 3 17 144 1 130 2.45e-21 96.3
Msa0085490 AT2G33480.3 46.000 100 52 1 72 169 4 103 3.62e-21 92.4
Msa0085490 AT1G02220.1 37.692 130 76 2 17 144 1 127 7.76e-20 92.4
Msa0085490 AT4G28530.2 45.370 108 41 3 21 112 12 117 3.30e-19 89.4
Msa0085490 AT1G01010.1 37.589 141 76 3 17 147 1 139 8.86e-18 86.3
Msa0085490 AT5G14000.2 32.283 127 80 2 22 146 18 140 4.56e-17 79.0
Msa0085490 AT5G22290.2 56.667 60 22 1 100 155 2 61 7.28e-17 80.9
Msa0085490 AT2G18060.2 39.583 96 55 2 100 194 3 96 4.02e-16 79.3
Msa0085490 AT3G56530.1 31.544 149 97 4 21 167 54 199 4.87e-16 79.7
Msa0085490 AT5G14000.1 30.263 152 97 3 22 171 18 162 6.39e-16 77.4
Msa0085490 AT2G43000.2 42.045 88 50 1 83 169 2 89 2.45e-15 75.5
Msa0085490 AT3G55210.1 30.000 160 94 4 21 167 13 167 4.90e-15 76.3
Msa0085490 AT1G32870.2 27.068 266 162 7 330 567 257 518 1.28e-12 70.9
Msa0085490 AT1G28470.1 34.659 176 85 11 17 172 74 239 1.21e-11 66.6

Find 164 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGGAAATTTAAGACTATT+AGG 0.168141 1_2:-65631022 Msa0085490:CDS
GCCCATTCTTCTTCTTTAAA+TGG 0.196298 1_2:+65632910 None:intergenic
TCTAGAATTAAGGCTGATTT+TGG 0.200844 1_2:+65630831 None:intergenic
ACAGTTTGATTTGCGTCTTC+TGG 0.203030 1_2:+65631780 None:intergenic
CCATACTGTTCACCGTTCTT+AGG 0.238231 1_2:+65632937 None:intergenic
GAAATTGATGAAATCATTAA+AGG 0.251587 1_2:-65632778 Msa0085490:CDS
CAAAATATCGAGAGAGAAAA+TGG 0.252897 1_2:+65634771 None:intergenic
GATCGAGATGGGTGCGGTTT+CGG 0.256333 1_2:-65634431 Msa0085490:exon
ATCAAACTGTTGATGAATTC+TGG 0.264215 1_2:-65631767 Msa0085490:CDS
GAACAATCTTTCTTGAAAAC+TGG 0.280179 1_2:-65633379 Msa0085490:CDS
CTGAAAATCCCTTGGTAAAT+CGG 0.287533 1_2:-65631213 Msa0085490:CDS
AAAACCCACAACAAAATAAT+AGG 0.305550 1_2:+65634686 None:intergenic
TATTGTAAGGTGAAAGGTTT+AGG 0.308091 1_2:+65634820 None:intergenic
TCGTCAATTCAAACTATCTA+AGG 0.318076 1_2:-65634550 Msa0085490:five_prime_UTR
GCTTTCTTGTGGGTTTCTAT+TGG 0.323704 1_2:-65631040 Msa0085490:CDS
TCCTCCCCGCTTTGAATGTT+CGG 0.334586 1_2:+65632065 None:intergenic
TGCTTTATGTGCTTTCTTGT+GGG 0.339931 1_2:-65631050 Msa0085490:CDS
TTGGAAATTTAAGACTATTA+GGG 0.350725 1_2:-65631021 Msa0085490:CDS
GAGATGTTTCTTTGTGGCCT+GGG 0.356280 1_2:-65631891 Msa0085490:CDS
AAATAATAGGATCGAACCTC+TGG 0.362954 1_2:+65634699 None:intergenic
AAGCCCTTACTCTAGAATTA+AGG 0.372762 1_2:+65630821 None:intergenic
TATCTATAGCAGCAAAACTT+TGG 0.381183 1_2:+65630970 None:intergenic
GCACATAAAGCAATAAGAAT+CGG 0.388701 1_2:+65631061 None:intergenic
TCAGCCTTAATTCTAGAGTA+AGG 0.391111 1_2:-65630825 Msa0085490:three_prime_UTR
CTTTCTTGAAAACTGGAGAT+AGG 0.392935 1_2:-65633372 Msa0085490:CDS
GGTACGAGGATTCGAGGATT+AGG 0.400673 1_2:+65634721 None:intergenic
CACTTAACACATCTTCAAAC+TGG 0.406573 1_2:+65631937 None:intergenic
TGTAGGATGGAAGCGAAAAC+CGG 0.414677 1_2:+65634363 None:intergenic
TAAGACATGCCGTGATGTTA+AGG 0.415877 1_2:-65633122 Msa0085490:intron
ATCTGAAAAGGAAGATTTGT+GGG 0.421125 1_2:-65634318 Msa0085490:CDS
TTGATTTGCGTCTTCTGGAT+TGG 0.421770 1_2:+65631785 None:intergenic
AGAGATGTTTCTTTGTGGCC+TGG 0.424888 1_2:-65631892 Msa0085490:CDS
GAAATGTGATATACAATTCT+CGG 0.433492 1_2:-65633249 Msa0085490:CDS
ATGAAGAGAGCAGGCAGAAA+GGG 0.435247 1_2:-65631103 Msa0085490:CDS
TCACACGTAGGATCGAATTC+TGG 0.438989 1_2:-65630719 Msa0085490:three_prime_UTR
GAATCAGTCAATATTGTTGT+GGG 0.439215 1_2:-65634524 Msa0085490:five_prime_UTR
AAAGGTTTAGGATAGTGTTA+TGG 0.442553 1_2:+65634832 None:intergenic
TTGCTTTATGTGCTTTCTTG+TGG 0.443767 1_2:-65631051 Msa0085490:CDS
CGTATTTGAAAATGTAGATT+CGG 0.443952 1_2:+65631992 None:intergenic
CCTAAGAACGGTGAACAGTA+TGG 0.447178 1_2:-65632937 Msa0085490:CDS
CTTCTGGATTGGACAACAAC+TGG 0.447857 1_2:+65631796 None:intergenic
ACTTTGGATTTACATATTCA+AGG 0.452308 1_2:+65630986 None:intergenic
CAATAAGAATCGGGAAGAAA+AGG 0.454768 1_2:+65631071 None:intergenic
CACCATTTAAAGAAGAAGAA+TGG 0.455058 1_2:-65632912 Msa0085490:CDS
TGATGAAGAAGCACGAAATA+TGG 0.459058 1_2:-65632246 Msa0085490:CDS
TTGATGATCGAAGTCAAAGC+TGG 0.459355 1_2:+65632139 None:intergenic
GATGCAGAGATGTTTCTTTG+TGG 0.460432 1_2:-65631897 Msa0085490:CDS
TAAATATTCAACTCAAGGTA+AGG 0.461844 1_2:-65630865 Msa0085490:three_prime_UTR
CACATAAAGCAATAAGAATC+GGG 0.470798 1_2:+65631062 None:intergenic
AAATTGATGAAATCATTAAA+GGG 0.472368 1_2:-65632777 Msa0085490:CDS
TTAATGTAAATTCAGTTGAC+CGG 0.472399 1_2:-65632867 Msa0085490:CDS
TAGTGGTGAGCGAACTGATT+GGG 0.473263 1_2:-65633179 Msa0085490:CDS
TAGTGAGTTTGTGAGCTTGT+TGG 0.473308 1_2:+65634940 None:intergenic
TGAAAATCCCTTGGTAAATC+GGG 0.476781 1_2:-65631212 Msa0085490:CDS
ACCATTTAAAGAAGAAGAAT+GGG 0.480249 1_2:-65632911 Msa0085490:CDS
CTTGACCAGCATCATGTGAA+TGG 0.480498 1_2:-65632733 Msa0085490:CDS
TCTTTCTCTCTAACAAATCC+AGG 0.483310 1_2:-65631696 Msa0085490:intron
TGGTGATGTATTATCTGAAA+AGG 0.485179 1_2:-65634330 Msa0085490:CDS
TGAATCAGTCAATATTGTTG+TGG 0.485192 1_2:-65634525 Msa0085490:five_prime_UTR
CCTCTGGGTACGAGGATTCG+AGG 0.488887 1_2:+65634715 None:intergenic
AAAGAAACATCTCTGCATCT+TGG 0.490156 1_2:+65631901 None:intergenic
CTTTGGATTTACATATTCAA+GGG 0.491520 1_2:+65630987 None:intergenic
GGACTATTATGCACTTTACA+AGG 0.492066 1_2:-65632983 Msa0085490:CDS
TAGATTCTCCTCTGCTCTGT+GGG 0.494069 1_2:-65631275 Msa0085490:CDS
TGTTGTAAATATTCAACTCA+AGG 0.494233 1_2:-65630870 Msa0085490:three_prime_UTR
AGAGTATGAAGGTTATTGTA+AGG 0.494765 1_2:+65634807 None:intergenic
GATAGTGTTATGGTCAAAGA+AGG 0.494857 1_2:+65634842 None:intergenic
CGACTAGACCTTCCACCGTT+AGG 0.494968 1_2:+65633313 None:intergenic
ATCGAATGTCTAGCTTCAGC+AGG 0.496594 1_2:-65631183 Msa0085490:CDS
GAAGGTTATTGTAAGGTGAA+AGG 0.497229 1_2:+65634814 None:intergenic
AGGAAGCTAAGGTAAGTGGT+TGG 0.497513 1_2:+65634862 None:intergenic
CATGGCTACTGGAAAGCTAC+TGG 0.501589 1_2:-65633280 Msa0085490:CDS
TGGGATCCTGAGGATTTGCC+AGG 0.504804 1_2:-65634250 Msa0085490:intron
AAGAAACTGATGTGTACAAG+TGG 0.505121 1_2:-65634270 Msa0085490:CDS
ACCTGCAGCAATGTTGTTGT+CGG 0.505799 1_2:+65631144 None:intergenic
TATCTGAAAAGGAAGATTTG+TGG 0.507777 1_2:-65634319 Msa0085490:CDS
AACATCTCTGCATCTTGGTA+AGG 0.509554 1_2:+65631906 None:intergenic
TTCGGAGTGGAAGTGACCTC+AGG 0.514206 1_2:+65632083 None:intergenic
GAGGTGATGTCGTCGATGCC+CGG 0.516759 1_2:-65634382 Msa0085490:CDS
TGCAGCAATGTTGTTGTCGG+TGG 0.520896 1_2:+65631147 None:intergenic
GAGCAACTAGACATGGCTAC+TGG 0.524027 1_2:-65633291 Msa0085490:CDS
CAATCAGTTCGCTCACCACT+AGG 0.525126 1_2:+65633181 None:intergenic
AGATGTTTCTTTGTGGCCTG+GGG 0.525648 1_2:-65631890 Msa0085490:CDS
CAGCCTTAATTCTAGAGTAA+GGG 0.525765 1_2:-65630824 Msa0085490:three_prime_UTR
ATAACCTTCAGCTGGACTGC+GGG 0.526602 1_2:+65631725 None:intergenic
ACATGATGCTGGTCAAGGAC+AGG 0.530141 1_2:+65632739 None:intergenic
CTAGTGGTGAGCGAACTGAT+TGG 0.530398 1_2:-65633180 Msa0085490:CDS
GAACCATCATAACCTTCAGC+TGG 0.532336 1_2:+65631717 None:intergenic
CAAATACCTGGCAAATCCTC+AGG 0.532529 1_2:+65634244 None:intergenic
ACTTGGATCAGGGAATATCA+TGG 0.537254 1_2:+65632202 None:intergenic
CCACTCCGAACATTCAAAGC+GGG 0.539242 1_2:-65632070 Msa0085490:CDS
TCTTCTGATCGAGATGGGTG+CGG 0.539716 1_2:-65634437 Msa0085490:exon
ACATTGTCAATAGCAGCCTC+TGG 0.541794 1_2:+65632838 None:intergenic
ATCAGCTGCTGAAAATCCCT+TGG 0.543692 1_2:-65631221 Msa0085490:CDS
TATGAAGAGAGCAGGCAGAA+AGG 0.544360 1_2:-65631104 Msa0085490:CDS
CCATCCTACAGATGAGGAGT+TGG 0.546592 1_2:-65634350 Msa0085490:CDS
TCAAACAACGGCTGCAGCTG+AGG 0.548463 1_2:+65632805 None:intergenic
ATATACAATTCTCGGTCAGT+TGG 0.550050 1_2:-65633241 Msa0085490:CDS
CTTAAGCTCATCTTCATCCA+TGG 0.555126 1_2:+65633141 None:intergenic
TGGAAGGTTCCTACAAAATG+AGG 0.557920 1_2:+65634882 None:intergenic
ATGGTCAAAGAAGGAAGCTA+AGG 0.562583 1_2:+65634851 None:intergenic
ACCGACAACAACATTGCTGC+AGG 0.564654 1_2:-65631145 Msa0085490:CDS
TTTCTTCGTTAATAGACCCC+AGG 0.566378 1_2:+65631874 None:intergenic
GCAGCTGATGCAGGAGTGGT+AGG 0.567625 1_2:+65631235 None:intergenic
AAGAAGGAAGCTAAGGTAAG+TGG 0.567857 1_2:+65634858 None:intergenic
GTAGATTCTCCTCTGCTCTG+TGG 0.569065 1_2:-65631276 Msa0085490:CDS
AGCTAAGGTAAGTGGTTGGA+AGG 0.569646 1_2:+65634866 None:intergenic
GAAATTTAAGACTATTAGGG+AGG 0.570246 1_2:-65631018 Msa0085490:CDS
AGTCCAGCTGAAGGTTATGA+TGG 0.570391 1_2:-65631720 Msa0085490:CDS
TTCAGCAGCTGATGCAGGAG+TGG 0.571280 1_2:+65631231 None:intergenic
TGAAAACTGGAGATAGGCAA+TGG 0.573201 1_2:-65633366 Msa0085490:CDS
CAAAACCATTCACATGATGC+TGG 0.573664 1_2:+65632728 None:intergenic
CCAACTCCTCATCTGTAGGA+TGG 0.575287 1_2:+65634350 None:intergenic
TCGCTTCCATCCTACAGATG+AGG 0.575961 1_2:-65634356 Msa0085490:CDS
GGAAGTATCCTAACGGTGGA+AGG 0.576876 1_2:-65633321 Msa0085490:CDS
GTGTATTTCTGAAGCGCCTG+AGG 0.581773 1_2:-65632099 Msa0085490:CDS
TGTTCACCGTTCTTAGGACC+CGG 0.583775 1_2:+65632943 None:intergenic
GCAGCAATGTTGTTGTCGGT+GGG 0.584407 1_2:+65631148 None:intergenic
TGAAGAGAGCAGGCAGAAAG+GGG 0.585879 1_2:-65631102 Msa0085490:CDS
TTCAAAGCCCGATTTACCAA+GGG 0.588762 1_2:+65631205 None:intergenic
GGTGTTGTGTGTGACTCCGT+CGG 0.590393 1_2:-65631355 Msa0085490:CDS
GTAGGATGGAAGCGAAAACC+GGG 0.594035 1_2:+65634364 None:intergenic
TAATGTAAATTCAGTTGACC+GGG 0.596335 1_2:-65632866 Msa0085490:CDS
ATTCAAAGCCCGATTTACCA+AGG 0.600157 1_2:+65631204 None:intergenic
ACTGCAACTATGAAGAGAGC+AGG 0.602471 1_2:-65631112 Msa0085490:CDS
AATAATAGGATCGAACCTCT+GGG 0.606378 1_2:+65634700 None:intergenic
AACAAAGGCCCACAGAGCAG+AGG 0.607999 1_2:+65631267 None:intergenic
TTTGGATTTACATATTCAAG+GGG 0.609182 1_2:+65630988 None:intergenic
CATTCACATGATGCTGGTCA+AGG 0.613140 1_2:+65632734 None:intergenic
CCCGCTTTGAATGTTCGGAG+TGG 0.613926 1_2:+65632070 None:intergenic
AGAAGCACGAAATATGGTCA+TGG 0.614401 1_2:-65632240 Msa0085490:CDS
TGATTCAGTGCCTTTGAGTG+AGG 0.615063 1_2:+65634910 None:intergenic
CATGCATATATGAATAACAC+TGG 0.615203 1_2:-65631843 Msa0085490:CDS
TTAACACATCTTCAAACTGG+AGG 0.617122 1_2:+65631940 None:intergenic
TCTAGAGTAAGGGCTTGTAT+CGG 0.617355 1_2:-65630814 Msa0085490:three_prime_UTR
AGTTGACCGGGAGGTTCCAG+AGG 0.618649 1_2:-65632854 Msa0085490:CDS
TGTAAATTCAGTTGACCGGG+AGG 0.624909 1_2:-65632863 Msa0085490:CDS
CATAACCTTCAGCTGGACTG+CGG 0.625001 1_2:+65631724 None:intergenic
AACACCCGCAGTCCAGCTGA+AGG 0.628590 1_2:-65631729 Msa0085490:CDS
TAGCAGCCTCTGGAACCTCC+CGG 0.629756 1_2:+65632848 None:intergenic
TTCTGCTGATTGTTTCAGTG+AGG 0.630580 1_2:-65634401 Msa0085490:CDS
CTAGTCACTACCTCACTCAA+AGG 0.632055 1_2:-65634920 Msa0085490:five_prime_UTR
AGTGGACCGGGTCCTAAGAA+CGG 0.632315 1_2:-65632949 Msa0085490:CDS
ATCACCAACTCCTCATCTGT+AGG 0.637563 1_2:+65634346 None:intergenic
TCTAGTCGAGCAACTAGACA+TGG 0.640127 1_2:-65633298 Msa0085490:CDS
TATCTTGGCAGAGCTCCTAG+TGG 0.644063 1_2:-65633196 Msa0085490:CDS
AGAAACTGATGTGTACAAGT+GGG 0.646248 1_2:-65634269 Msa0085490:CDS
TCAATTTCATCGTCAAACAA+CGG 0.652367 1_2:+65632793 None:intergenic
GGATCGAACCTCTGGGTACG+AGG 0.652799 1_2:+65634707 None:intergenic
TGATGATCGAAGTCAAAGCT+GGG 0.653823 1_2:+65632140 None:intergenic
CACTCCGAACATTCAAAGCG+GGG 0.660148 1_2:-65632069 Msa0085490:CDS
GGTAGGTATTGAATCAACAA+AGG 0.665588 1_2:+65631252 None:intergenic
AGAGATAGGAAGTATCCTAA+CGG 0.667183 1_2:-65633328 Msa0085490:CDS
GATAGGAAGTATCCTAACGG+TGG 0.667673 1_2:-65633325 Msa0085490:CDS
GCTTTCAGTAGGAAAGCCGA+CGG 0.670837 1_2:+65631339 None:intergenic
AAGGTAATACCTTAACATCA+CGG 0.671087 1_2:+65633113 None:intergenic
TCGAATGTCTAGCTTCAGCA+GGG 0.672244 1_2:-65631182 Msa0085490:CDS
GAAGAGAGCAGGCAGAAAGG+GGG 0.676486 1_2:-65631101 Msa0085490:CDS
TCCACTCCGAACATTCAAAG+CGG 0.683841 1_2:-65632071 Msa0085490:CDS
TCCGAACATTCAAAGCGGGG+AGG 0.705397 1_2:-65632066 Msa0085490:CDS
CCTCGAATCCTCGTACCCAG+AGG 0.706992 1_2:-65634715 Msa0085490:five_prime_UTR
TGTGTACAAGTGGGATCCTG+AGG 0.709821 1_2:-65634260 Msa0085490:CDS
GGTTATGCATGAGTACACCA+TGG 0.756724 1_2:-65633158 Msa0085490:CDS
GGTCATGGATCAATTCTACG+AGG 0.803413 1_2:-65632225 Msa0085490:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGAAATTTGATTTTTTAATT+AGG - chr1_2:65630977-65630996 Msa0085490:three_prime_UTR 10.0%
!!! GAAATTTGATTTTTTAATTA+GGG - chr1_2:65630978-65630997 Msa0085490:three_prime_UTR 10.0%
!!! ACAAAAAAAACTTTTTATAA+GGG - chr1_2:65633072-65633091 Msa0085490:intron 10.0%
!!! TCAACTTTATCTATTTTTTT+GGG - chr1_2:65631875-65631894 Msa0085490:CDS 15.0%
!! AATTTATTTCCTTCAAATAA+TGG - chr1_2:65632057-65632076 Msa0085490:CDS 15.0%
!! ATTTATTTCCTTCAAATAAT+GGG - chr1_2:65632058-65632077 Msa0085490:CDS 15.0%
!!! TTTAAAATTATTGTTTCTGT+TGG - chr1_2:65632505-65632524 Msa0085490:intron 15.0%
!! TTTGATATAAATTCATTATC+AGG - chr1_2:65632575-65632594 Msa0085490:intron 15.0%
!! AAATTGATGAAATCATTAAA+GGG - chr1_2:65632802-65632821 Msa0085490:CDS 15.0%
!!! GACAAAAAAAACTTTTTATA+AGG - chr1_2:65633071-65633090 Msa0085490:intron 15.0%
!!! AAGCTTTTTGAATAAATAAG+TGG + chr1_2:65630927-65630946 None:intergenic 20.0%
!!! ATGTTTTTGATTTTGTTTGT+TGG - chr1_2:65631455-65631474 Msa0085490:intron 20.0%
!! ACAAAATATCAAATAAGCAT+AGG + chr1_2:65631627-65631646 None:intergenic 20.0%
!!! TGATATTTTGTATGTTTTTC+AGG - chr1_2:65631636-65631655 Msa0085490:intron 20.0%
!!! GTCAACTTTATCTATTTTTT+TGG - chr1_2:65631874-65631893 Msa0085490:CDS 20.0%
!!! CAACTTTATCTATTTTTTTG+GGG - chr1_2:65631876-65631895 Msa0085490:CDS 20.0%
!!! TTACAGTTTTTCATTTCTTT+TGG - chr1_2:65632145-65632164 Msa0085490:CDS 20.0%
!! GAAATTGATGAAATCATTAA+AGG - chr1_2:65632801-65632820 Msa0085490:CDS 20.0%
!!! AAAAGTTTTTTTTGTCAGAT+GGG + chr1_2:65633067-65633086 None:intergenic 20.0%
!!! AAAAAGTTTTTTTTGTCAGA+TGG + chr1_2:65633068-65633087 None:intergenic 20.0%
!!! AAAACTTTTTATAAGGGTTT+TGG - chr1_2:65633078-65633097 Msa0085490:intron 20.0%
!! ACAAAATTTAAACTCCATAA+AGG + chr1_2:65634066-65634085 None:intergenic 20.0%
!!! ATTGGAAATTTAAGACTATT+AGG - chr1_2:65634557-65634576 Msa0085490:five_prime_UTR 20.0%
!!! TTGGAAATTTAAGACTATTA+GGG - chr1_2:65634558-65634577 Msa0085490:five_prime_UTR 20.0%
!!! CTTATTTCTGTTTTCTTTTT+GGG - chr1_2:65634837-65634856 Msa0085490:five_prime_UTR 20.0%
! GAAAAAATAACAGAGTATGA+AGG + chr1_2:65630786-65630805 None:intergenic 25.0%
! AAAACCCACAACAAAATAAT+AGG + chr1_2:65630896-65630915 None:intergenic 25.0%
!!! TTTTGTTTGTCATCTCTTTT+TGG - chr1_2:65630951-65630970 Msa0085490:three_prime_UTR 25.0%
!! TTTGTTTGTCATCTCTTTTT+GGG - chr1_2:65630952-65630971 Msa0085490:three_prime_UTR 25.0%
! CCAATCAGAAAAACATAAAA+GGG + chr1_2:65631388-65631407 None:intergenic 25.0%
! ACCAATCAGAAAAACATAAA+AGG + chr1_2:65631389-65631408 None:intergenic 25.0%
! AACCAACAAAAAAGAAAACT+AGG + chr1_2:65631429-65631448 None:intergenic 25.0%
!!! ATGATTTTGGTTTTGTTTGT+TGG - chr1_2:65631486-65631505 Msa0085490:intron 25.0%
!! GTTGGTTATGTTTATGTTTT+TGG - chr1_2:65631442-65631461 Msa0085490:intron 25.0%
!!! TGTTTTTGGTTTTGTTTGAT+CGG - chr1_2:65631518-65631537 Msa0085490:intron 25.0%
! AAAAACCTTATCGAAACAAA+TGG + chr1_2:65631684-65631703 None:intergenic 25.0%
!!! TAAGGTTTTTGTGTGTTATT+TGG - chr1_2:65631694-65631713 Msa0085490:intron 25.0%
!!! AAGGTTTTTGTGTGTTATTT+GGG - chr1_2:65631695-65631714 Msa0085490:intron 25.0%
! TTCATGTTATGACCTATAAT+TGG - chr1_2:65631744-65631763 Msa0085490:CDS 25.0%
! ATCGAATAAACACCAATTAT+AGG + chr1_2:65631759-65631778 None:intergenic 25.0%
!! TATAATTGGTGTTTATTCGA+TGG - chr1_2:65631758-65631777 Msa0085490:CDS 25.0%
!! ATAATTGGTGTTTATTCGAT+GGG - chr1_2:65631759-65631778 Msa0085490:CDS 25.0%
! TTGAGAACCAAAAATATCTA+CGG + chr1_2:65631978-65631997 None:intergenic 25.0%
! TTGAAGGAAATAAATTCGAA+AGG + chr1_2:65632053-65632072 None:intergenic 25.0%
! GAAATGTGATATACAATTCT+CGG - chr1_2:65632330-65632349 Msa0085490:intron 25.0%
! ACCATTTAAAGAAGAAGAAT+GGG - chr1_2:65632668-65632687 Msa0085490:intron 25.0%
! TTAATGTAAATTCAGTTGAC+CGG - chr1_2:65632712-65632731 Msa0085490:intron 25.0%
!! TTTAGAACAAAAAATACTCC+AGG + chr1_2:65632903-65632922 None:intergenic 25.0%
! TTAAAAAACAAAACCAAACC+CGG + chr1_2:65633151-65633170 None:intergenic 25.0%
! ACAGTAGAGATATTTAAACA+TGG + chr1_2:65633179-65633198 None:intergenic 25.0%
!! CATTTTTCCATGAATCATAT+AGG - chr1_2:65633306-65633325 Msa0085490:CDS 25.0%
! CGTATTTGAAAATGTAGATT+CGG + chr1_2:65633590-65633609 None:intergenic 25.0%
!! CGAATCTACATTTTCAAATA+CGG - chr1_2:65633588-65633607 Msa0085490:intron 25.0%
!! TGATTTTACTTTCTTCGATT+TGG - chr1_2:65633951-65633970 Msa0085490:intron 25.0%
! CCAAAAACTATGACAAATTA+GGG + chr1_2:65634195-65634214 None:intergenic 25.0%
! ACCAAAAACTATGACAAATT+AGG + chr1_2:65634196-65634215 None:intergenic 25.0%
! TTTGGATTTACATATTCAAG+GGG + chr1_2:65634594-65634613 None:intergenic 25.0%
! CTTTGGATTTACATATTCAA+GGG + chr1_2:65634595-65634614 None:intergenic 25.0%
! ACTTTGGATTTACATATTCA+AGG + chr1_2:65634596-65634615 None:intergenic 25.0%
! TGTTGTAAATATTCAACTCA+AGG - chr1_2:65634709-65634728 Msa0085490:five_prime_UTR 25.0%
! TAAATATTCAACTCAAGGTA+AGG - chr1_2:65634714-65634733 Msa0085490:five_prime_UTR 25.0%
! CCAAAAAGAAAACAGAAATA+AGG + chr1_2:65634839-65634858 None:intergenic 25.0%
!!! CCTTATTTCTGTTTTCTTTT+TGG - chr1_2:65634836-65634855 Msa0085490:five_prime_UTR 25.0%
! ATCATTCTTCCTCATTTTGT+AGG - chr1_2:65630688-65630707 Msa0085490:three_prime_UTR 30.0%
! AAAGGTTTAGGATAGTGTTA+TGG + chr1_2:65630750-65630769 None:intergenic 30.0%
TATTGTAAGGTGAAAGGTTT+AGG + chr1_2:65630762-65630781 None:intergenic 30.0%
AGAGTATGAAGGTTATTGTA+AGG + chr1_2:65630775-65630794 None:intergenic 30.0%
CAAAATATCGAGAGAGAAAA+TGG + chr1_2:65630811-65630830 None:intergenic 30.0%
! CATTTTCTCTCTCGATATTT+TGG - chr1_2:65630809-65630828 Msa0085490:three_prime_UTR 30.0%
!! TCGATCCTATTATTTTGTTG+TGG - chr1_2:65630888-65630907 Msa0085490:three_prime_UTR 30.0%
!! CGATCCTATTATTTTGTTGT+GGG - chr1_2:65630889-65630908 Msa0085490:three_prime_UTR 30.0%
TCGTCAATTCAAACTATCTA+AGG - chr1_2:65631029-65631048 Msa0085490:CDS 30.0%
TGAATCAGTCAATATTGTTG+TGG - chr1_2:65631054-65631073 Msa0085490:CDS 30.0%
GAATCAGTCAATATTGTTGT+GGG - chr1_2:65631055-65631074 Msa0085490:CDS 30.0%
! TCAATATTGTTGTGGGTTTT+TGG - chr1_2:65631062-65631081 Msa0085490:CDS 30.0%
!! GGTTTTGATCGAAAAAGTTT+CGG - chr1_2:65631083-65631102 Msa0085490:CDS 30.0%
! ATCGAAAAAGTTTCGGTTTT+TGG - chr1_2:65631090-65631109 Msa0085490:CDS 30.0%
! TGGTGATGTATTATCTGAAA+AGG - chr1_2:65631249-65631268 Msa0085490:CDS 30.0%
TATCTGAAAAGGAAGATTTG+TGG - chr1_2:65631260-65631279 Msa0085490:CDS 30.0%
ATCTGAAAAGGAAGATTTGT+GGG - chr1_2:65631261-65631280 Msa0085490:CDS 30.0%
! CCCTTTTATGTTTTTCTGAT+TGG - chr1_2:65631385-65631404 Msa0085490:intron 30.0%
!! GACCTAGTTTTCTTTTTTGT+TGG - chr1_2:65631424-65631443 Msa0085490:intron 30.0%
! GTTGGTTATGCTTATGATTT+TGG - chr1_2:65631473-65631492 Msa0085490:intron 30.0%
!!! GTTTTGTTTGATCGGTTATA+AGG - chr1_2:65631526-65631545 Msa0085490:intron 30.0%
TGTACATAACATTCACAACA+AGG + chr1_2:65631581-65631600 None:intergenic 30.0%
TGTACAGTACTTAGAAATTC+AGG - chr1_2:65631595-65631614 Msa0085490:intron 30.0%
! GATAGATCCGTAGATATTTT+TGG - chr1_2:65631968-65631987 Msa0085490:CDS 30.0%
!!! TCCTTCAAATAATGGGTTTT+TGG - chr1_2:65632065-65632084 Msa0085490:CDS 30.0%
TCCAAAAACCCATTATTTGA+AGG + chr1_2:65632069-65632088 None:intergenic 30.0%
GAACAATCTTTCTTGAAAAC+TGG - chr1_2:65632200-65632219 Msa0085490:CDS 30.0%
! TCTTTTTCTGTCATAGAGAT+AGG - chr1_2:65632237-65632256 Msa0085490:CDS 30.0%
!! AAGACACTTGTTTTCTATCT+TGG - chr1_2:65632368-65632387 Msa0085490:intron 30.0%
AAGGTAATACCTTAACATCA+CGG + chr1_2:65632469-65632488 None:intergenic 30.0%
AAAGTAAAATAGTCAGCTGA+AGG + chr1_2:65632488-65632507 None:intergenic 30.0%
!! TACAAGGTTTTCAAGAAAAG+TGG - chr1_2:65632612-65632631 Msa0085490:intron 30.0%
CACCATTTAAAGAAGAAGAA+TGG - chr1_2:65632667-65632686 Msa0085490:intron 30.0%
TAATGTAAATTCAGTTGACC+GGG - chr1_2:65632713-65632732 Msa0085490:intron 30.0%
TCAATTTCATCGTCAAACAA+CGG + chr1_2:65632789-65632808 None:intergenic 30.0%
! GTTATGCCTTTATTCCTTTT+TGG - chr1_2:65632938-65632957 Msa0085490:CDS 30.0%
CAACAACCAAAAAGGAATAA+AGG + chr1_2:65632947-65632966 None:intergenic 30.0%
!!! TTATTCCTTTTTGGTTGTTG+CGG - chr1_2:65632947-65632966 Msa0085490:CDS 30.0%
GAGATCAAAACTACAAAAAC+AGG + chr1_2:65633026-65633045 None:intergenic 30.0%
!! ACTTTTTATAAGGGTTTTGG+TGG - chr1_2:65633081-65633100 Msa0085490:intron 30.0%
!!! TTCTCTTGTTTTCCTTCTAT+TGG - chr1_2:65633248-65633267 Msa0085490:CDS 30.0%
CATGCATATATGAATAACAC+TGG - chr1_2:65633736-65633755 Msa0085490:intron 30.0%
! ATCAAACTGTTGATGAATTC+TGG - chr1_2:65633812-65633831 Msa0085490:intron 30.0%
!! TTTACTTTCTTCGATTTGGA+TGG - chr1_2:65633955-65633974 Msa0085490:intron 30.0%
!! CCCTAATTTGTCATAGTTTT+TGG - chr1_2:65634192-65634211 Msa0085490:intron 30.0%
!!! CATAGTTTTTGGTCATGTTT+AGG - chr1_2:65634203-65634222 Msa0085490:intron 30.0%
CACATAAAGCAATAAGAATC+GGG + chr1_2:65634520-65634539 None:intergenic 30.0%
GCACATAAAGCAATAAGAAT+CGG + chr1_2:65634521-65634540 None:intergenic 30.0%
! GAAATTTAAGACTATTAGGG+AGG - chr1_2:65634561-65634580 Msa0085490:five_prime_UTR 30.0%
TATCTATAGCAGCAAAACTT+TGG + chr1_2:65634612-65634631 None:intergenic 30.0%
!! TCTAGAATTAAGGCTGATTT+TGG + chr1_2:65634751-65634770 None:intergenic 30.0%
!!! TGGTCATCTTTTATTTCTAC+AGG - chr1_2:65634880-65634899 Msa0085490:five_prime_UTR 30.0%
!!! GGTCATCTTTTATTTCTACA+GGG - chr1_2:65634881-65634900 Msa0085490:five_prime_UTR 30.0%
GATAGTGTTATGGTCAAAGA+AGG + chr1_2:65630740-65630759 None:intergenic 35.0%
GAAGGTTATTGTAAGGTGAA+AGG + chr1_2:65630768-65630787 None:intergenic 35.0%
AATAATAGGATCGAACCTCT+GGG + chr1_2:65630882-65630901 None:intergenic 35.0%
AAATAATAGGATCGAACCTC+TGG + chr1_2:65630883-65630902 None:intergenic 35.0%
!!! AAAGTTTCGGTTTTTGGTTC+TGG - chr1_2:65631096-65631115 Msa0085490:CDS 35.0%
!!! TTTTTGGTTCTGGATAATCG+AGG - chr1_2:65631106-65631125 Msa0085490:CDS 35.0%
!!! TTTTGGTTCTGGATAATCGA+GGG - chr1_2:65631107-65631126 Msa0085490:CDS 35.0%
! TTTTTGTCTTCTGATCGAGA+TGG - chr1_2:65631136-65631155 Msa0085490:CDS 35.0%
! TTTTGTCTTCTGATCGAGAT+GGG - chr1_2:65631137-65631156 Msa0085490:CDS 35.0%
AAGAAACTGATGTGTACAAG+TGG - chr1_2:65631309-65631328 Msa0085490:CDS 35.0%
AGAAACTGATGTGTACAAGT+GGG - chr1_2:65631310-65631329 Msa0085490:CDS 35.0%
!! TCGGTTATAAGGTGTTGATT+TGG - chr1_2:65631537-65631556 Msa0085490:intron 35.0%
!! CGGTTATAAGGTGTTGATTT+GGG - chr1_2:65631538-65631557 Msa0085490:intron 35.0%
GACTTCCATTTGTTTCGATA+AGG - chr1_2:65631676-65631695 Msa0085490:intron 35.0%
TGGTAATCAGTCTTACATCT+AGG + chr1_2:65631821-65631840 None:intergenic 35.0%
AAGCAAATCATCACATGACA+CGG + chr1_2:65632003-65632022 None:intergenic 35.0%
CTTTCTTGAAAACTGGAGAT+AGG - chr1_2:65632207-65632226 Msa0085490:CDS 35.0%
!! AGAGATAGGAAGTATCCTAA+CGG - chr1_2:65632251-65632270 Msa0085490:CDS 35.0%
ATATACAATTCTCGGTCAGT+TGG - chr1_2:65632338-65632357 Msa0085490:intron 35.0%
GGACTATTATGCACTTTACA+AGG - chr1_2:65632596-65632615 Msa0085490:intron 35.0%
GCCCATTCTTCTTCTTTAAA+TGG + chr1_2:65632672-65632691 None:intergenic 35.0%
!!! TATTCCTTTTTGGTTGTTGC+GGG - chr1_2:65632948-65632967 Msa0085490:CDS 35.0%
ATATGTGAAAATCTGCACTC+CGG - chr1_2:65633129-65633148 Msa0085490:CDS 35.0%
TACTGTTAATAATGAGAGCC+AGG - chr1_2:65633193-65633212 Msa0085490:CDS 35.0%
TAAGAGAGAAGACCAATAGA+AGG + chr1_2:65633263-65633282 None:intergenic 35.0%
CATGGAAAAATGTTTGTCAG+CGG + chr1_2:65633298-65633317 None:intergenic 35.0%
TCAGCAACCTATATGATTCA+TGG + chr1_2:65633316-65633335 None:intergenic 35.0%
! TGATGAAGAAGCACGAAATA+TGG - chr1_2:65633333-65633352 Msa0085490:CDS 35.0%
!!! CTAGATTGCTGTTTTTCACT+TGG + chr1_2:65633397-65633416 None:intergenic 35.0%
TTAACACATCTTCAAACTGG+AGG + chr1_2:65633642-65633661 None:intergenic 35.0%
CACTTAACACATCTTCAAAC+TGG + chr1_2:65633645-65633664 None:intergenic 35.0%
AAAGAAACATCTCTGCATCT+TGG + chr1_2:65633681-65633700 None:intergenic 35.0%
TCTTTCTCTCTAACAAATCC+AGG - chr1_2:65633883-65633902 Msa0085490:intron 35.0%
ACAAATCCAGGTATAGTCAT+TGG - chr1_2:65633895-65633914 Msa0085490:intron 35.0%
!! GTTTTTGAGCCAATTTCAAG+TGG - chr1_2:65634139-65634158 Msa0085490:intron 35.0%
! TGCTGCTTAGAAAATGTCAT+AGG - chr1_2:65634165-65634184 Msa0085490:intron 35.0%
! TGATTTTCAGTGCTTTCAGT+AGG + chr1_2:65634254-65634273 None:intergenic 35.0%
!! GGTAGGTATTGAATCAACAA+AGG + chr1_2:65634330-65634349 None:intergenic 35.0%
CTGAAAATCCCTTGGTAAAT+CGG - chr1_2:65634366-65634385 Msa0085490:CDS 35.0%
TGAAAATCCCTTGGTAAATC+GGG - chr1_2:65634367-65634386 Msa0085490:CDS 35.0%
CAATAAGAATCGGGAAGAAA+AGG + chr1_2:65634511-65634530 None:intergenic 35.0%
TTGCTTTATGTGCTTTCTTG+TGG - chr1_2:65634528-65634547 Msa0085490:five_prime_UTR 35.0%
TGCTTTATGTGCTTTCTTGT+GGG - chr1_2:65634529-65634548 Msa0085490:five_prime_UTR 35.0%
!! TCAGCCTTAATTCTAGAGTA+AGG - chr1_2:65634754-65634773 Msa0085490:five_prime_UTR 35.0%
!! CAGCCTTAATTCTAGAGTAA+GGG - chr1_2:65634755-65634774 Msa0085490:five_prime_UTR 35.0%
!! AAGCCCTTACTCTAGAATTA+AGG + chr1_2:65634761-65634780 None:intergenic 35.0%
TAGTGAGTTTGTGAGCTTGT+TGG + chr1_2:65630642-65630661 None:intergenic 40.0%
TGGAAGGTTCCTACAAAATG+AGG + chr1_2:65630700-65630719 None:intergenic 40.0%
AAGAAGGAAGCTAAGGTAAG+TGG + chr1_2:65630724-65630743 None:intergenic 40.0%
ATGGTCAAAGAAGGAAGCTA+AGG + chr1_2:65630731-65630750 None:intergenic 40.0%
! TTCTGCTGATTGTTTCAGTG+AGG - chr1_2:65631178-65631197 Msa0085490:CDS 40.0%
GAAGAGCAAGAACAAATACC+TGG + chr1_2:65631350-65631369 None:intergenic 40.0%
CAAATGGAAGTCAACTCTTG+AGG + chr1_2:65631668-65631687 None:intergenic 40.0%
! CTGAGATCTCTTGGTTGATA+TGG - chr1_2:65631903-65631922 Msa0085490:CDS 40.0%
! GATCTCTTGGTTGATATGGT+CGG - chr1_2:65631907-65631926 Msa0085490:CDS 40.0%
TGAAAACTGGAGATAGGCAA+TGG - chr1_2:65632213-65632232 Msa0085490:CDS 40.0%
CTTAAGCTCATCTTCATCCA+TGG + chr1_2:65632441-65632460 None:intergenic 40.0%
TAAGACATGCCGTGATGTTA+AGG - chr1_2:65632457-65632476 Msa0085490:intron 40.0%
!! GGTTTTCAAGAAAAGTGGAC+CGG - chr1_2:65632617-65632636 Msa0085490:intron 40.0%
!! GTTTTCAAGAAAAGTGGACC+GGG - chr1_2:65632618-65632637 Msa0085490:intron 40.0%
CAAAACCATTCACATGATGC+TGG + chr1_2:65632854-65632873 None:intergenic 40.0%
!!! TGGTTTTGTTGACTTTCCTC+AGG - chr1_2:65632866-65632885 Msa0085490:CDS 40.0%
!!! TTTTTGGTTGTTGCGGGTAT+GGG - chr1_2:65632954-65632973 Msa0085490:CDS 40.0%
TATGTGAAAATCTGCACTCC+GGG - chr1_2:65633130-65633149 Msa0085490:CDS 40.0%
GATCAGAAAAACTGAGTTCC+TGG + chr1_2:65633214-65633233 None:intergenic 40.0%
! AGAAGCACGAAATATGGTCA+TGG - chr1_2:65633339-65633358 Msa0085490:CDS 40.0%
ACTTGGATCAGGGAATATCA+TGG + chr1_2:65633380-65633399 None:intergenic 40.0%
!!! GCTGTTTTTCACTTGGATCA+GGG + chr1_2:65633390-65633409 None:intergenic 40.0%
!!! TGCTGTTTTTCACTTGGATC+AGG + chr1_2:65633391-65633410 None:intergenic 40.0%
TGATGATCGAAGTCAAAGCT+GGG + chr1_2:65633442-65633461 None:intergenic 40.0%
! TTGATGATCGAAGTCAAAGC+TGG + chr1_2:65633443-65633462 None:intergenic 40.0%
! GAGCTTGTCTTTTATGAGGA+AGG - chr1_2:65633535-65633554 Msa0085490:intron 40.0%
! CTTTTATGAGGAAGGCTTCT+TGG - chr1_2:65633543-65633562 Msa0085490:intron 40.0%
AACATCTCTGCATCTTGGTA+AGG + chr1_2:65633676-65633695 None:intergenic 40.0%
GATGCAGAGATGTTTCTTTG+TGG - chr1_2:65633682-65633701 Msa0085490:intron 40.0%
TTTCTTCGTTAATAGACCCC+AGG + chr1_2:65633708-65633727 None:intergenic 40.0%
!! TTGATTTGCGTCTTCTGGAT+TGG + chr1_2:65633797-65633816 None:intergenic 40.0%
!! ACAGTTTGATTTGCGTCTTC+TGG + chr1_2:65633802-65633821 None:intergenic 40.0%
AAGCTACAATGTTGCTCAAC+TGG - chr1_2:65633921-65633940 Msa0085490:intron 40.0%
TTCAAAGCCCGATTTACCAA+GGG + chr1_2:65634377-65634396 None:intergenic 40.0%
ATTCAAAGCCCGATTTACCA+AGG + chr1_2:65634378-65634397 None:intergenic 40.0%
GCTTTCTTGTGGGTTTCTAT+TGG - chr1_2:65634539-65634558 Msa0085490:five_prime_UTR 40.0%
! TCTAGAGTAAGGGCTTGTAT+CGG - chr1_2:65634765-65634784 Msa0085490:five_prime_UTR 40.0%
!!! TTTCTTTTTGGGTCACACGT+AGG - chr1_2:65634848-65634867 Msa0085490:five_prime_UTR 40.0%
CTAGTCACTACCTCACTCAA+AGG - chr1_2:65630659-65630678 Msa0085490:three_prime_UTR 45.0%
TGATTCAGTGCCTTTGAGTG+AGG + chr1_2:65630672-65630691 None:intergenic 45.0%
AGCTAAGGTAAGTGGTTGGA+AGG + chr1_2:65630716-65630735 None:intergenic 45.0%
AGGAAGCTAAGGTAAGTGGT+TGG + chr1_2:65630720-65630739 None:intergenic 45.0%
TGTAGGATGGAAGCGAAAAC+CGG + chr1_2:65631219-65631238 None:intergenic 45.0%
ATCACCAACTCCTCATCTGT+AGG + chr1_2:65631236-65631255 None:intergenic 45.0%
CAAATACCTGGCAAATCCTC+AGG + chr1_2:65631338-65631357 None:intergenic 45.0%
ACGGATCTATCATGCACTGA+AGG + chr1_2:65631959-65631978 None:intergenic 45.0%
!! GATAGGAAGTATCCTAACGG+TGG - chr1_2:65632254-65632273 Msa0085490:CDS 45.0%
TCTAGTCGAGCAACTAGACA+TGG - chr1_2:65632281-65632300 Msa0085490:intron 45.0%
TAGTGGTGAGCGAACTGATT+GGG - chr1_2:65632400-65632419 Msa0085490:intron 45.0%
GGTTATGCATGAGTACACCA+TGG - chr1_2:65632421-65632440 Msa0085490:intron 45.0%
CCATACTGTTCACCGTTCTT+AGG + chr1_2:65632645-65632664 None:intergenic 45.0%
CCTAAGAACGGTGAACAGTA+TGG - chr1_2:65632642-65632661 Msa0085490:intron 45.0%
TGTAAATTCAGTTGACCGGG+AGG - chr1_2:65632716-65632735 Msa0085490:CDS 45.0%
ACATTGTCAATAGCAGCCTC+TGG + chr1_2:65632744-65632763 None:intergenic 45.0%
CATTCACATGATGCTGGTCA+AGG + chr1_2:65632848-65632867 None:intergenic 45.0%
CTTGACCAGCATCATGTGAA+TGG - chr1_2:65632846-65632865 Msa0085490:CDS 45.0%
CATACCCGCAACAACCAAAA+AGG + chr1_2:65632955-65632974 None:intergenic 45.0%
!!! CTTTTTGGTTGTTGCGGGTA+TGG - chr1_2:65632953-65632972 Msa0085490:CDS 45.0%
!! TTTTGGTTGTTGCGGGTATG+GGG - chr1_2:65632955-65632974 Msa0085490:CDS 45.0%
GGTCATGGATCAATTCTACG+AGG - chr1_2:65633354-65633373 Msa0085490:CDS 45.0%
TCCACTCCGAACATTCAAAG+CGG - chr1_2:65633508-65633527 Msa0085490:intron 45.0%
! GGAGGAGCTTGTCTTTTATG+AGG - chr1_2:65633531-65633550 Msa0085490:intron 45.0%
AGAGATGTTTCTTTGTGGCC+TGG - chr1_2:65633687-65633706 Msa0085490:intron 45.0%
GAGATGTTTCTTTGTGGCCT+GGG - chr1_2:65633688-65633707 Msa0085490:intron 45.0%
AGATGTTTCTTTGTGGCCTG+GGG - chr1_2:65633689-65633708 Msa0085490:intron 45.0%
! CTTCTGGATTGGACAACAAC+TGG + chr1_2:65633786-65633805 None:intergenic 45.0%
AGTCCAGCTGAAGGTTATGA+TGG - chr1_2:65633859-65633878 Msa0085490:intron 45.0%
GAACCATCATAACCTTCAGC+TGG + chr1_2:65633865-65633884 None:intergenic 45.0%
CTTGTGCCAATGACTATACC+TGG + chr1_2:65633904-65633923 None:intergenic 45.0%
GAGCTCAGCAGAAATGAGAT+GGG + chr1_2:65633993-65634012 None:intergenic 45.0%
TAGATTCTCCTCTGCTCTGT+GGG - chr1_2:65634304-65634323 Msa0085490:CDS 45.0%
ATCAGCTGCTGAAAATCCCT+TGG - chr1_2:65634358-65634377 Msa0085490:CDS 45.0%
! ATCGAATGTCTAGCTTCAGC+AGG - chr1_2:65634396-65634415 Msa0085490:CDS 45.0%
! TCGAATGTCTAGCTTCAGCA+GGG - chr1_2:65634397-65634416 Msa0085490:CDS 45.0%
ACCTGCAGCAATGTTGTTGT+CGG + chr1_2:65634438-65634457 None:intergenic 45.0%
ACTGCAACTATGAAGAGAGC+AGG - chr1_2:65634467-65634486 Msa0085490:five_prime_UTR 45.0%
TATGAAGAGAGCAGGCAGAA+AGG - chr1_2:65634475-65634494 Msa0085490:five_prime_UTR 45.0%
ATGAAGAGAGCAGGCAGAAA+GGG - chr1_2:65634476-65634495 Msa0085490:five_prime_UTR 45.0%
TCACACGTAGGATCGAATTC+TGG - chr1_2:65634860-65634879 Msa0085490:five_prime_UTR 45.0%
GGTACGAGGATTCGAGGATT+AGG + chr1_2:65630861-65630880 None:intergenic 50.0%
TCTTCTGATCGAGATGGGTG+CGG - chr1_2:65631142-65631161 Msa0085490:CDS 50.0%
GTAGGATGGAAGCGAAAACC+GGG + chr1_2:65631218-65631237 None:intergenic 50.0%
TCGCTTCCATCCTACAGATG+AGG - chr1_2:65631223-65631242 Msa0085490:CDS 50.0%
CCAACTCCTCATCTGTAGGA+TGG + chr1_2:65631232-65631251 None:intergenic 50.0%
CCATCCTACAGATGAGGAGT+TGG - chr1_2:65631229-65631248 Msa0085490:CDS 50.0%
TGTGTACAAGTGGGATCCTG+AGG - chr1_2:65631319-65631338 Msa0085490:CDS 50.0%
AATGAACCCCGCAAAGAGGA+GGG + chr1_2:65631848-65631867 None:intergenic 50.0%
TGTCAATGAACCCCGCAAAG+AGG + chr1_2:65631852-65631871 None:intergenic 50.0%
TGGGGTATGCTGAGATCTCT+TGG - chr1_2:65631894-65631913 Msa0085490:CDS 50.0%
! CTCTTGGTTGATATGGTCGG+TGG - chr1_2:65631910-65631929 Msa0085490:CDS 50.0%
!! GGAAGTATCCTAACGGTGGA+AGG - chr1_2:65632258-65632277 Msa0085490:intron 50.0%
GAGCAACTAGACATGGCTAC+TGG - chr1_2:65632288-65632307 Msa0085490:intron 50.0%
CATGGCTACTGGAAAGCTAC+TGG - chr1_2:65632299-65632318 Msa0085490:intron 50.0%
TATCTTGGCAGAGCTCCTAG+TGG - chr1_2:65632383-65632402 Msa0085490:intron 50.0%
CAATCAGTTCGCTCACCACT+AGG + chr1_2:65632401-65632420 None:intergenic 50.0%
CTAGTGGTGAGCGAACTGAT+TGG - chr1_2:65632399-65632418 Msa0085490:intron 50.0%
TGTTCACCGTTCTTAGGACC+CGG + chr1_2:65632639-65632658 None:intergenic 50.0%
ACATGATGCTGGTCAAGGAC+AGG + chr1_2:65632843-65632862 None:intergenic 50.0%
GAAAATCTGCACTCCGGGTT+TGG - chr1_2:65633135-65633154 Msa0085490:CDS 50.0%
!! GTGTATTTCTGAAGCGCCTG+AGG - chr1_2:65633480-65633499 Msa0085490:intron 50.0%
CCACTCCGAACATTCAAAGC+GGG - chr1_2:65633509-65633528 Msa0085490:intron 50.0%
CACTCCGAACATTCAAAGCG+GGG - chr1_2:65633510-65633529 Msa0085490:intron 50.0%
! TCCTCCCCGCTTTGAATGTT+CGG + chr1_2:65633517-65633536 None:intergenic 50.0%
ATAACCTTCAGCTGGACTGC+GGG + chr1_2:65633857-65633876 None:intergenic 50.0%
CATAACCTTCAGCTGGACTG+CGG + chr1_2:65633858-65633877 None:intergenic 50.0%
CGAGCTCAGCAGAAATGAGA+TGG + chr1_2:65633994-65634013 None:intergenic 50.0%
TCGTCACAGTTTACTGCTCC+TGG - chr1_2:65634011-65634030 Msa0085490:intron 50.0%
GCAGCAGAGCCACTTGAAAT+TGG + chr1_2:65634151-65634170 None:intergenic 50.0%
GCTTTCAGTAGGAAAGCCGA+CGG + chr1_2:65634243-65634262 None:intergenic 50.0%
GTAGATTCTCCTCTGCTCTG+TGG - chr1_2:65634303-65634322 Msa0085490:CDS 50.0%
! GGATTTTCAGCAGCTGATGC+AGG + chr1_2:65634356-65634375 None:intergenic 50.0%
GCAGCAATGTTGTTGTCGGT+GGG + chr1_2:65634434-65634453 None:intergenic 50.0%
TGCAGCAATGTTGTTGTCGG+TGG + chr1_2:65634435-65634454 None:intergenic 50.0%
ACCGACAACAACATTGCTGC+AGG - chr1_2:65634434-65634453 Msa0085490:exon 50.0%
TGAAGAGAGCAGGCAGAAAG+GGG - chr1_2:65634477-65634496 Msa0085490:five_prime_UTR 50.0%
GATCGAGATGGGTGCGGTTT+CGG - chr1_2:65631148-65631167 Msa0085490:CDS 55.0%
TGGGATCCTGAGGATTTGCC+AGG - chr1_2:65631329-65631348 Msa0085490:CDS 55.0%
ACCAGTTCCCCTCCTCTTTG+CGG - chr1_2:65631837-65631856 Msa0085490:CDS 55.0%
ATGAACCCCGCAAAGAGGAG+GGG + chr1_2:65631847-65631866 None:intergenic 55.0%
CAATGAACCCCGCAAAGAGG+AGG + chr1_2:65631849-65631868 None:intergenic 55.0%
CGACTAGACCTTCCACCGTT+AGG + chr1_2:65632269-65632288 None:intergenic 55.0%
AGTGGACCGGGTCCTAAGAA+CGG - chr1_2:65632630-65632649 Msa0085490:intron 55.0%
TCAAACAACGGCTGCAGCTG+AGG + chr1_2:65632777-65632796 None:intergenic 55.0%
TTCGGAGTGGAAGTGACCTC+AGG + chr1_2:65633499-65633518 None:intergenic 55.0%
! CCCGCTTTGAATGTTCGGAG+TGG + chr1_2:65633512-65633531 None:intergenic 55.0%
TCCGAACATTCAAAGCGGGG+AGG - chr1_2:65633513-65633532 Msa0085490:intron 55.0%
GCGCGTGGCAGAAACCTTTA+TGG - chr1_2:65634049-65634068 Msa0085490:intron 55.0%
! GGTGTTGTGTGTGACTCCGT+CGG - chr1_2:65634224-65634243 Msa0085490:intron 55.0%
AACAAAGGCCCACAGAGCAG+AGG + chr1_2:65634315-65634334 None:intergenic 55.0%
TTCAGCAGCTGATGCAGGAG+TGG + chr1_2:65634351-65634370 None:intergenic 55.0%
GAAGAGAGCAGGCAGAAAGG+GGG - chr1_2:65634478-65634497 Msa0085490:five_prime_UTR 55.0%
CCTCTGGGTACGAGGATTCG+AGG + chr1_2:65630867-65630886 None:intergenic 60.0%
CCTCGAATCCTCGTACCCAG+AGG - chr1_2:65630864-65630883 Msa0085490:three_prime_UTR 60.0%
GGATCGAACCTCTGGGTACG+AGG + chr1_2:65630875-65630894 None:intergenic 60.0%
GAGGTGATGTCGTCGATGCC+CGG - chr1_2:65631197-65631216 Msa0085490:CDS 60.0%
CCAGTTCCCCTCCTCTTTGC+GGG - chr1_2:65631838-65631857 Msa0085490:CDS 60.0%
CAGTTCCCCTCCTCTTTGCG+GGG - chr1_2:65631839-65631858 Msa0085490:CDS 60.0%
AGTTGACCGGGAGGTTCCAG+AGG - chr1_2:65632725-65632744 Msa0085490:CDS 60.0%
!! TAGCAGCCTCTGGAACCTCC+CGG + chr1_2:65632734-65632753 None:intergenic 60.0%
CCAGGCAGATCACACACCTG+AGG + chr1_2:65632885-65632904 None:intergenic 60.0%
CCTCAGGTGTGTGATCTGCC+TGG - chr1_2:65632882-65632901 Msa0085490:CDS 60.0%
TGGTTGTTGCGGGTATGGGG+AGG - chr1_2:65632958-65632977 Msa0085490:CDS 60.0%
AACACCCGCAGTCCAGCTGA+AGG - chr1_2:65633850-65633869 Msa0085490:intron 60.0%
! CGCAAGTTGGCGTGTCAACC+AGG + chr1_2:65634032-65634051 None:intergenic 60.0%
TTGACACGCCAACTTGCGCG+TGG - chr1_2:65634034-65634053 Msa0085490:intron 60.0%
GGTTTCTGCCACGCGCAAGT+TGG + chr1_2:65634045-65634064 None:intergenic 60.0%
GCAGCTGATGCAGGAGTGGT+AGG + chr1_2:65634347-65634366 None:intergenic 60.0%
CCCGCAAAGAGGAGGGGAAC+TGG + chr1_2:65631841-65631860 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 65630637 65634964 65630637 ID=Msa0085490;Name=Msa0085490
chr1_2 mRNA 65630637 65634964 65630637 ID=Msa0085490-mRNA-1;Parent=Msa0085490;Name=Msa0085490-mRNA-1;_AED=0.05;_eAED=0.05;_QI=518|1|1|1|1|1|5|366|571
chr1_2 exon 65630637 65631376 65630637 ID=Msa0085490-mRNA-1:exon:22190;Parent=Msa0085490-mRNA-1
chr1_2 exon 65631697 65632273 65631697 ID=Msa0085490-mRNA-1:exon:22189;Parent=Msa0085490-mRNA-1
chr1_2 exon 65632714 65633004 65632714 ID=Msa0085490-mRNA-1:exon:22188;Parent=Msa0085490-mRNA-1
chr1_2 exon 65633123 65633400 65633123 ID=Msa0085490-mRNA-1:exon:22187;Parent=Msa0085490-mRNA-1
chr1_2 exon 65634251 65634964 65634251 ID=Msa0085490-mRNA-1:exon:22186;Parent=Msa0085490-mRNA-1
chr1_2 five_prime_UTR 65634447 65634964 65634447 ID=Msa0085490-mRNA-1:five_prime_utr;Parent=Msa0085490-mRNA-1
chr1_2 CDS 65634251 65634446 65634251 ID=Msa0085490-mRNA-1:cds;Parent=Msa0085490-mRNA-1
chr1_2 CDS 65633123 65633400 65633123 ID=Msa0085490-mRNA-1:cds;Parent=Msa0085490-mRNA-1
chr1_2 CDS 65632714 65633004 65632714 ID=Msa0085490-mRNA-1:cds;Parent=Msa0085490-mRNA-1
chr1_2 CDS 65631697 65632273 65631697 ID=Msa0085490-mRNA-1:cds;Parent=Msa0085490-mRNA-1
chr1_2 CDS 65631003 65631376 65631003 ID=Msa0085490-mRNA-1:cds;Parent=Msa0085490-mRNA-1
chr1_2 three_prime_UTR 65630637 65631002 65630637 ID=Msa0085490-mRNA-1:three_prime_utr;Parent=Msa0085490-mRNA-1
Gene Sequence

>Msa0085490

ATGGGTGCGGTTTCGGAATCTGCTTCTGCTGATTGTTTCAGTGAGGTGATGTCGTCGATGCCCGGTTTTCGCTTCCATCCTACAGATGAGGAGTTGGTGATGTATTATCTGAAAAGGAAGATTTGTGGGAAGAAGTTGAAGTTCAACGTTATCAAAGAAACTGATGTGTACAAGTGGGATCCTGAGGATTTGCCAGAACAATCTTTCTTGAAAACTGGAGATAGGCAATGGTTCTTTTTCTGTCATAGAGATAGGAAGTATCCTAACGGTGGAAGGTCTAGTCGAGCAACTAGACATGGCTACTGGAAAGCTACTGGAAAAGATCGAAATGTGATATACAATTCTCGGTCAGTTGGAGTGAAAAAGACACTTGTTTTCTATCTTGGCAGAGCTCCTAGTGGTGAGCGAACTGATTGGGTTATGCATGAGTACACCATGGATGAAGATGAGCTTAAGACATGCCGTGATGTTAAGGACTATTATGCACTTTACAAGGTTTTCAAGAAAAGTGGACCGGGTCCTAAGAACGGTGAACAGTATGGTGCACCATTTAAAGAAGAAGAATGGGCAGATGACGATGTTGTAGATTTTAATGTAAATTCAGTTGACCGGGAGGTTCCAGAGGCTGCTATTGACAATGTTATTGATCAGCCTCAGCTGCAGCCGTTGTTTGACGATGAAATTGATGAAATCATTAAAGGGATGCTTGATGTTGAGCCTGTCCTTGACCAGCATCATGTGAATGGTTTTGTTGACTTTCCTCAGGTTGCTGATGAAGAAGCACGAAATATGGTCATGGATCAATTCTACGAGGCCATGATATTCCCTGATCCAAGTGAAAAACAGCAATCTAGCAGTCAGCTTTATGATGCGCAGCCCAGCTTTGACTTCGATCATCAATCAGTTGATTCTCACTTGTGTATTTCTGAAGCGCCTGAGGTCACTTCCACTCCGAACATTCAAAGCGGGGAGGAGCTTGTCTTTTATGAGGAAGGCTTCTTGGAAATTAATGATCTCATTGATACCGAATCTACATTTTCAAATACGGATAAGCTTAACAACGATCTCATTGAGAACCTCCAGTTTGAAGATGTGTTAAGTGAATTTGATCCTTACCAAGATGCAGAGATGTTTCTTTGTGGCCTGGGGTCTATTAACGAAGAAACAGTTTCACATGCATATATGAATAACACTGGCAGCAATATTGAAAATCAGAGTTACCAGTTGTTGTCCAATCCAGAAGACGCAAATCAAACTGTTGATGAATTCTGGATGCATGTTGAAAGAAACACCCGCAGTCCAGCTGAAGGTTATGATGGTTCTTTCTCTCTAACAAATCCAGGTGTTGTGTGTGACTCCGTCGGCTTTCCTACTGAAAGCACTGAAAATCAAAGAAGCACTGTAGAAGATGTTAAAACAAGTAGATTCTCCTCTGCTCTGTGGGCCTTTGTTGATTCAATACCTACCACTCCTGCATCAGCTGCTGAAAATCCCTTGGTAAATCGGGCTTTGAATCGAATGTCTAGCTTCAGCAGGGTGAAGATCAAGCCCACCGACAACAACATTGCTGCAGGTAATAATGACACTGCAACTATGAAGAGAGCAGGCAGAAAGGGGGTCTCATTCCTTTTCTTCCCGATTCTTATTGCTTTATGTGCTTTCTTGTGGGTTTCTATTGGAAATTTAAGACTATTAGGGAGGTGTGTCTCCCCTTGA
Protein sequence

>Msa0085490

MGAVSESASADCFSEVMSSMPGFRFHPTDEELVMYYLKRKICGKKLKFNVIKETDVYKWDPEDLPEQSFLKTGDRQWFFFCHRDRKYPNGGRSSRATRHGYWKATGKDRNVIYNSRSVGVKKTLVFYLGRAPSGERTDWVMHEYTMDEDELKTCRDVKDYYALYKVFKKSGPGPKNGEQYGAPFKEEEWADDDVVDFNVNSVDREVPEAAIDNVIDQPQLQPLFDDEIDEIIKGMLDVEPVLDQHHVNGFVDFPQVADEEARNMVMDQFYEAMIFPDPSEKQQSSSQLYDAQPSFDFDHQSVDSHLCISEAPEVTSTPNIQSGEELVFYEEGFLEINDLIDTESTFSNTDKLNNDLIENLQFEDVLSEFDPYQDAEMFLCGLGSINEETVSHAYMNNTGSNIENQSYQLLSNPEDANQTVDEFWMHVERNTRSPAEGYDGSFSLTNPGVVCDSVGFPTESTENQRSTVEDVKTSRFSSALWAFVDSIPTTPASAAENPLVNRALNRMSSFSRVKIKPTDNNIAAGNNDTATMKRAGRKGVSFLFFPILIALCAFLWVSIGNLRLLGRCVSP*