AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0085660

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0085660 MtrunA17_Chr1g0201621 97.704 479 10 1 6 483 1 479 0.0 965
Msa0085660 MtrunA17_Chr1g0201311 96.868 479 14 1 6 483 1 479 0.0 959
Msa0085660 MtrunA17_Chr3g0125251 41.453 234 134 3 17 249 1253 1484 2.14e-55 200
Msa0085660 MtrunA17_Chr6g0477001 43.519 216 118 4 16 231 42 253 2.81e-48 169
Msa0085660 MtrunA17_Chr1g0201321 96.386 83 2 1 276 357 1 83 8.70e-48 159
Msa0085660 MtrunA17_Chr2g0305371 34.728 239 145 4 15 253 269 496 9.45e-41 153
Msa0085660 MtrunA17_Chr5g0403241 35.503 169 94 2 71 224 1334 1502 3.59e-23 103
Msa0085660 MtrunA17_Chr2g0297191 40.323 124 73 1 101 224 1044 1166 3.86e-23 103
Msa0085660 MtrunA17_Chr4g0075321 34.706 170 92 3 72 224 892 1059 4.12e-23 103
Msa0085660 MtrunA17_Chr8g0354821 32.836 201 97 6 66 229 489 688 7.05e-21 95.9
Msa0085660 MtrunA17_Chr7g0235081 39.844 128 70 1 90 210 195 322 1.19e-20 93.2
Msa0085660 MtrunA17_Chr5g0401921 36.095 169 92 3 47 208 672 831 1.26e-20 95.5
Msa0085660 MtrunA17_Chr3g0126701 36.242 149 91 3 83 228 915 1062 5.43e-20 93.6
Msa0085660 MtrunA17_Chr8g0347071 36.424 151 92 3 81 228 799 948 6.25e-20 93.6
Msa0085660 MtrunA17_Chr5g0399801 34.343 198 92 8 66 228 894 1088 8.64e-20 93.2
Msa0085660 MtrunA17_Chr8g0373821 34.337 166 95 3 72 224 369 533 9.56e-20 92.0
Msa0085660 MtrunA17_Chr7g0275611 38.158 152 88 4 81 228 814 963 1.15e-19 92.4
Msa0085660 MtrunA17_Chr7g0255181 32.065 184 103 5 66 228 522 704 1.90e-19 91.7
Msa0085660 MtrunA17_Chr7g0221611 36.943 157 89 3 95 250 911 1058 2.03e-19 92.0
Msa0085660 MtrunA17_Chr1g0147121 35.762 151 93 3 81 228 884 1033 2.78e-19 91.7
Msa0085660 MtrunA17_Chr4g0003511 31.658 199 90 7 66 225 857 1048 9.11e-19 89.7
Msa0085660 MtrunA17_Chr1g0194631 36.923 130 80 1 78 207 599 726 1.72e-18 88.6
Msa0085660 MtrunA17_Chr1g0170651 37.107 159 77 7 80 225 394 542 2.76e-18 87.8
Msa0085660 MtrunA17_Chr1g0149581 35.461 141 86 2 93 228 1525 1665 3.43e-18 88.2
Msa0085660 MtrunA17_Chr1g0149611 35.461 141 86 2 93 228 367 507 4.02e-18 87.0
Msa0085660 MtrunA17_Chr4g0003501 31.606 193 96 7 66 225 762 951 1.85e-17 85.9
Msa0085660 MtrunA17_Chr3g0080761 32.487 197 94 7 66 224 464 659 8.53e-17 83.2
Msa0085660 MtrunA17_Chr6g0460921 32.450 151 86 4 72 206 247 397 7.29e-15 76.6
Msa0085660 MtrunA17_Chr7g0270001 36.697 109 67 1 100 208 159 265 8.03e-14 72.0
Msa0085660 MtrunA17_Chr7g0232981 28.788 198 100 8 42 208 301 488 9.76e-14 73.6
Msa0085660 MtrunA17_Chr1g0183321 29.050 179 95 6 72 224 569 741 4.56e-13 71.6
Msa0085660 MtrunA17_Chr7g0252211 30.198 202 101 7 66 228 556 756 5.02e-13 71.6
Msa0085660 MtrunA17_Chr6g0476121 30.198 202 101 7 66 228 442 642 9.66e-12 67.4
Msa0085660 MtrunA17_Chr7g0262001 28.324 173 104 5 72 224 525 697 9.42e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0085660 AT1G76710.2 64.124 485 157 7 7 475 6 489 0.0 613
Msa0085660 AT1G76710.1 64.124 485 157 7 7 475 6 489 0.0 613
Msa0085660 AT1G76710.4 62.955 494 157 8 7 475 6 498 0.0 603
Msa0085660 AT1G76710.3 60.742 512 157 8 7 475 6 516 0.0 598
Msa0085660 AT1G77300.1 42.060 233 127 4 20 249 958 1185 2.78e-56 202
Msa0085660 AT1G77300.2 42.060 233 127 4 20 249 958 1185 3.51e-56 202
Msa0085660 AT4G30860.1 37.004 227 132 4 7 233 254 469 1.11e-40 153
Msa0085660 AT3G59960.3 43.503 177 78 4 72 231 81 252 2.42e-34 130
Msa0085660 AT3G59960.2 43.503 177 78 4 72 231 81 252 2.42e-34 130
Msa0085660 AT3G59960.4 43.503 177 78 4 72 231 81 252 2.42e-34 130
Msa0085660 AT2G44150.1 36.245 229 117 4 17 231 44 257 7.07e-34 131
Msa0085660 AT3G59960.1 42.775 173 85 2 72 231 81 252 1.33e-33 129
Msa0085660 AT5G42400.7 42.742 124 70 1 101 224 1261 1383 3.56e-25 110
Msa0085660 AT5G42400.2 42.742 124 70 1 101 224 1261 1383 3.56e-25 110
Msa0085660 AT5G42400.8 42.742 124 70 1 101 224 1261 1383 3.56e-25 110
Msa0085660 AT5G42400.5 42.742 124 70 1 101 224 1261 1383 3.56e-25 110
Msa0085660 AT5G42400.4 42.742 124 70 1 101 224 1261 1383 3.56e-25 110
Msa0085660 AT5G42400.1 42.742 124 70 1 101 224 1261 1383 3.56e-25 110
Msa0085660 AT5G42400.3 42.742 124 70 1 101 224 1261 1383 3.56e-25 110
Msa0085660 AT5G42400.6 42.742 124 70 1 101 224 1261 1383 3.56e-25 110
Msa0085660 AT1G05830.2 36.257 171 96 5 73 239 900 1061 1.08e-20 96.3
Msa0085660 AT1G05830.4 36.257 171 96 5 73 239 900 1061 1.08e-20 96.3
Msa0085660 AT1G05830.1 36.257 171 96 5 73 239 900 1061 1.08e-20 96.3
Msa0085660 AT1G05830.3 36.257 171 96 5 73 239 900 1061 1.08e-20 96.3
Msa0085660 AT2G35160.5 36.872 179 87 8 66 228 589 757 1.21e-20 95.9
Msa0085660 AT2G35160.2 36.872 179 87 8 66 228 625 793 1.29e-20 95.9
Msa0085660 AT2G35160.3 36.872 179 87 8 66 228 625 793 1.29e-20 95.9
Msa0085660 AT2G35160.1 36.872 179 87 8 66 228 625 793 1.29e-20 95.9
Msa0085660 AT2G35160.4 36.872 179 87 8 66 228 625 793 1.29e-20 95.9
Msa0085660 AT3G03750.2 36.667 180 94 6 64 224 167 345 2.90e-20 92.4
Msa0085660 AT4G27910.1 36.424 151 92 3 81 228 877 1026 4.21e-20 94.4
Msa0085660 AT1G02580.1 33.728 169 95 3 53 216 518 674 6.49e-20 93.6
Msa0085660 AT2G23740.1 37.255 153 75 4 71 205 1199 1348 8.94e-20 93.6
Msa0085660 AT2G23740.3 37.255 153 75 4 71 205 1206 1355 9.53e-20 93.6
Msa0085660 AT2G23740.6 37.255 153 75 4 71 205 1206 1355 9.53e-20 93.6
Msa0085660 AT2G23740.2 37.255 153 75 4 71 205 1206 1355 9.53e-20 93.6
Msa0085660 AT2G23380.1 38.168 131 79 1 78 208 741 869 1.84e-19 92.4
Msa0085660 AT3G61740.2 37.255 153 89 4 81 228 831 981 2.79e-19 92.0
Msa0085660 AT2G23380.2 38.168 131 79 1 78 208 514 642 2.93e-19 91.3
Msa0085660 AT3G61740.1 37.255 153 89 4 81 228 867 1017 3.42e-19 91.7
Msa0085660 AT2G31650.1 35.673 171 97 5 73 239 879 1040 8.04e-19 90.5
Msa0085660 AT5G53430.1 35.099 151 94 3 81 228 893 1042 6.29e-18 87.8
Msa0085660 AT4G02020.1 36.154 130 81 1 78 207 696 823 7.69e-18 87.4
Msa0085660 AT5G04940.2 30.653 199 101 7 66 229 474 670 4.64e-17 84.7
Msa0085660 AT5G04940.1 30.653 199 101 7 66 229 474 670 4.64e-17 84.7
Msa0085660 AT2G22740.2 32.512 203 96 8 63 228 591 789 2.78e-16 82.4
Msa0085660 AT2G22740.1 32.512 203 96 8 63 228 591 789 2.78e-16 82.4
Msa0085660 AT1G17770.1 32.105 190 93 8 70 224 500 688 3.25e-16 82.0
Msa0085660 AT2G24740.1 28.796 191 100 6 74 229 566 755 1.45e-14 77.0
Msa0085660 AT2G23740.4 39.286 112 51 3 71 168 1206 1314 3.86e-14 75.9
Msa0085660 AT2G23740.5 39.286 112 51 3 71 168 1206 1314 3.86e-14 75.9
Msa0085660 AT3G04380.1 28.261 184 94 7 72 226 285 459 4.08e-12 68.6
Msa0085660 AT3G04380.2 28.261 184 94 7 72 226 258 432 4.48e-12 68.6
Msa0085660 AT3G04380.4 28.261 184 94 7 72 226 285 459 4.51e-12 68.6
Msa0085660 AT3G04380.6 28.261 184 94 7 72 226 258 432 4.95e-12 68.2
Msa0085660 AT3G04380.3 28.261 184 94 7 72 226 269 443 5.27e-12 68.2
Msa0085660 AT3G04380.5 28.261 184 94 7 72 226 242 416 6.39e-12 67.8

Find 138 sgRNAs with CRISPR-Local

Find 439 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAAAATTTGTTGGTGAAAA+AGG 0.114950 1_2:+65897734 Msa0085660:five_prime_UTR
AAAATAACAGACACAAATTT+TGG 0.154347 1_2:-65903862 None:intergenic
AAAATAACAGACAAAGATTT+TGG 0.185708 1_2:-65903980 None:intergenic
AGGCCGAGGGTGGGGTCTTT+TGG 0.223348 1_2:+65901010 Msa0085660:CDS
GACCTTGAGTTTCATAAGTA+TGG 0.226901 1_2:-65901218 None:intergenic
CTATGTTCTGTTATGAATTT+CGG 0.234287 1_2:-65903941 None:intergenic
TTTGGCTGATGAGGAAATTA+AGG 0.256975 1_2:+65901028 Msa0085660:CDS
GTGCTTCCTTTGATGCTAAA+AGG 0.263819 1_2:-65903003 None:intergenic
GAAGATCCTGTTTGGTATCT+TGG 0.294712 1_2:-65902850 None:intergenic
CAAGATTTATAAACCATTCC+TGG 0.303845 1_2:+65901392 Msa0085660:CDS
CAATAAGAGGAATGGGAAAA+TGG 0.327420 1_2:-65897926 None:intergenic
ATTCAACCACTGAATTCAAT+TGG 0.332627 1_2:+65902761 Msa0085660:CDS
GCACTGGAAGATATTCCTAT+TGG 0.334570 1_2:+65901613 Msa0085660:CDS
TCTCATGTTATTCATTCATA+TGG 0.335596 1_2:+65897960 Msa0085660:exon
CAAACTGTGAGACAAGAAAA+TGG 0.346413 1_2:+65901557 Msa0085660:CDS
AGCAGGAGGATACTTATCTA+TGG 0.346424 1_2:+65902200 Msa0085660:intron
ATGATCGAAGAAATTTGAAT+AGG 0.356481 1_2:-65897836 None:intergenic
AAGATCCTGTTTGGTATCTT+GGG 0.359715 1_2:-65902849 None:intergenic
AAGCGAGAAAAGGGGTTTGC+GGG 0.371768 1_2:-65897883 None:intergenic
GCTTGGCCGGGTGCCCTTTG+AGG 0.389466 1_2:-65903680 None:intergenic
ATCCTTCTCGTGTTCTTCAA+TGG 0.405165 1_2:-65903543 None:intergenic
CTGAATTCAATTGGGATCAA+TGG 0.406898 1_2:+65902770 Msa0085660:CDS
TATCATACAGTAAAATTTGT+TGG 0.409284 1_2:+65897725 Msa0085660:five_prime_UTR
GGATTTGTTTATCAGGTCCT+AGG 0.410964 1_2:-65903841 None:intergenic
TGATCGAAGAAATTTGAATA+GGG 0.412142 1_2:-65897835 None:intergenic
ATTCTTTATACAATGAAATA+CGG 0.412721 1_2:+65903516 Msa0085660:CDS
CCTGACAGTGCCTGTGGAGA+TGG 0.413253 1_2:+65900234 Msa0085660:CDS
TCCTCCGCAGAGTCATATAA+AGG 0.419793 1_2:-65902647 None:intergenic
ATTCTGTGAATCATCAATTA+CGG 0.429873 1_2:-65903767 None:intergenic
CTCAAATGTTCTGAATTCCT+TGG 0.432418 1_2:+65901706 Msa0085660:CDS
ATGCCACAAGGGCAAAATCC+AGG 0.434511 1_2:-65900291 None:intergenic
TCTATTGATGCAACTAGAAA+AGG 0.434611 1_2:+65901361 Msa0085660:CDS
TTTCATTGTATAAAGAATCA+AGG 0.435719 1_2:-65903511 None:intergenic
TTCTCGTGTTCTTCAATGGC+AGG 0.436989 1_2:-65903539 None:intergenic
GAAGAAAAGTTGGCAATAAG+AGG 0.444235 1_2:-65897939 None:intergenic
GTCTCTACCAAAAGATCAAA+GGG 0.456962 1_2:+65902926 Msa0085660:CDS
TATTCCTATTGGAACTGAAC+TGG 0.465129 1_2:+65901624 Msa0085660:CDS
ATAAGTATGGGATCTGCGCT+TGG 0.465834 1_2:-65901205 None:intergenic
AGTAGCAGAGAAGTGGATAC+AGG 0.474675 1_2:+65903589 Msa0085660:CDS
TTGAAGAGGTTTACCAGGAA+TGG 0.476963 1_2:-65901405 None:intergenic
TATGCCAGTTCAGTTCCAAT+AGG 0.481653 1_2:-65901628 None:intergenic
AACTCTTCTTGCGTTTGCGT+TGG 0.483560 1_2:-65897789 None:intergenic
TCAATTGGGATCAATGGCTT+AGG 0.484206 1_2:+65902776 Msa0085660:CDS
AAAACTGAAGGCCGAGGGTG+GGG 0.484563 1_2:+65901002 Msa0085660:CDS
ACCTTGAGTTTCATAAGTAT+GGG 0.487157 1_2:-65901217 None:intergenic
AAAGTTGGCAATAAGAGGAA+TGG 0.487385 1_2:-65897934 None:intergenic
TTCAACCACTGAATTCAATT+GGG 0.488608 1_2:+65902762 Msa0085660:CDS
AGCTTTCAGTATAATAGCCA+TGG 0.489595 1_2:-65902708 None:intergenic
CTGACAGTGCCTGTGGAGAT+GGG 0.490971 1_2:+65900235 Msa0085660:CDS
AAGTTGGCAATAAGAGGAAT+GGG 0.492253 1_2:-65897933 None:intergenic
AACGTTGCAGAAGCGAGAAA+AGG 0.493485 1_2:-65897893 None:intergenic
CCATCTCCACAGGCACTGTC+AGG 0.494885 1_2:-65900234 None:intergenic
AGGGCACCCGGCCAAGCAAA+AGG 0.495569 1_2:+65903686 Msa0085660:CDS
ACGTTGCAGAAGCGAGAAAA+GGG 0.497636 1_2:-65897892 None:intergenic
AATAACATGAGAAGAAAAGT+TGG 0.500368 1_2:-65897949 None:intergenic
TGTCGTAGATACACTGTCTT+GGG 0.502526 1_2:-65903567 None:intergenic
ACCAGCACTGAATGCACCCC+TGG 0.503846 1_2:+65900273 Msa0085660:CDS
AAAGTTAGTGCTGGTGCACT+AGG 0.508298 1_2:-65903900 None:intergenic
CGAAATTCATAACAGAACAT+AGG 0.511125 1_2:+65903942 Msa0085660:three_prime_UTR
CTAGGTTCTGTTATGAACTT+CGG 0.514327 1_2:-65903823 None:intergenic
ACCAAGTTATTTAAAACTGA+AGG 0.520954 1_2:+65900990 Msa0085660:CDS
AAGAGTTGGAATATTTGCAC+TGG 0.522066 1_2:+65901597 Msa0085660:CDS
ACTGCAAGTGCTGGTGCACT+AGG 0.524915 1_2:-65904017 None:intergenic
TTCATTGTATAAAGAATCAA+GGG 0.526900 1_2:-65903510 None:intergenic
TGTTGCTTGTACTCCTCAAA+GGG 0.529187 1_2:+65903667 Msa0085660:CDS
ATGTTGCTTGTACTCCTCAA+AGG 0.530019 1_2:+65903666 Msa0085660:CDS
TGCCACAAGGGCAAAATCCA+GGG 0.530653 1_2:-65900290 None:intergenic
TCCAGGGGTGCATTCAGTGC+TGG 0.531693 1_2:-65900274 None:intergenic
AATGGTTTATAAATCTTGCA+AGG 0.536559 1_2:-65901387 None:intergenic
CAGCCAAAAGACCCCACCCT+CGG 0.537785 1_2:-65901013 None:intergenic
CGTCTCTACCAAAAGATCAA+AGG 0.538724 1_2:+65902925 Msa0085660:CDS
AATGTTCTCAAAGTTAGTGC+TGG 0.542626 1_2:-65903909 None:intergenic
CGCATTCGAAGTAACACTGC+AGG 0.543043 1_2:+65902893 Msa0085660:CDS
CTGTCGTAGATACACTGTCT+TGG 0.543309 1_2:-65903568 None:intergenic
ACAAGAAAATGGAATGTCAT+GGG 0.544715 1_2:+65901568 Msa0085660:CDS
GAATGGGAAAATGGAAACGA+AGG 0.545742 1_2:-65897917 None:intergenic
ATTGATGCAAAGTATGCAGC+TGG 0.547593 1_2:+65902980 Msa0085660:CDS
TTTAGCATCAAAGGAAGCAC+AGG 0.547737 1_2:+65903006 Msa0085660:CDS
TGATTGATATGAATGTATTG+AGG 0.557044 1_2:-65898102 None:intergenic
AGTTGACAAACTGCAAGTGC+TGG 0.560076 1_2:-65904026 None:intergenic
TGAATGGTTTGGAGGTGCAA+AGG 0.560782 1_2:+65901663 Msa0085660:CDS
GCAGGAGGATACTTATCTAT+GGG 0.561610 1_2:+65902201 Msa0085660:intron
TAAAACTGAAGGCCGAGGGT+GGG 0.562493 1_2:+65901001 Msa0085660:CDS
CTACGACAGTAGCAGAGAAG+TGG 0.567208 1_2:+65903582 Msa0085660:CDS
AGCATCAAAGGAAGCACAGG+AGG 0.568189 1_2:+65903009 Msa0085660:CDS
GACAAGAAAATGGAATGTCA+TGG 0.568296 1_2:+65901567 Msa0085660:CDS
TTGATCCCAATTGAATTCAG+TGG 0.569284 1_2:-65902767 None:intergenic
GAAGCGAGAAAAGGGGTTTG+CGG 0.570439 1_2:-65897884 None:intergenic
GCATAAGAAGCAGAAGGAGG+AGG 0.570658 1_2:+65900173 Msa0085660:CDS
GTACTCCCAAGATACCAAAC+AGG 0.572352 1_2:+65902844 Msa0085660:CDS
ATATTGCTATATGTGAATGC+AGG 0.572676 1_2:+65900196 Msa0085660:CDS
TTGATGATTCACAGAATACA+TGG 0.573245 1_2:+65903773 Msa0085660:three_prime_UTR
TTGCGGGTGTGAAAGTGAAA+CGG 0.578219 1_2:-65897867 None:intergenic
CGAAGTTCATAACAGAACCT+AGG 0.583850 1_2:+65903824 Msa0085660:three_prime_UTR
TATGGGAAGATGATGATGAC+AGG 0.584972 1_2:+65902218 Msa0085660:CDS
TTCCTTGGAGCAAAATCTCG+TGG 0.586918 1_2:+65901721 Msa0085660:CDS
TTATTTAAAACTGAAGGCCG+AGG 0.589346 1_2:+65900996 Msa0085660:CDS
CGTTGGAACTGTAGTGGTAG+CGG 0.590834 1_2:-65897772 None:intergenic
AAGAAGAGTTTAGTTTCTAG+CGG 0.593035 1_2:+65897802 Msa0085660:five_prime_UTR
TTTAAAACAGTGGACTCCGA+TGG 0.593496 1_2:-65902737 None:intergenic
GATGAACTCACGTCAAATGT+TGG 0.593891 1_2:+65902668 Msa0085660:CDS
GGCTTCCTGCCTAAAACTCA+AGG 0.598288 1_2:+65903610 Msa0085660:CDS
TGCCATTGAAGAACACGAGA+AGG 0.599044 1_2:+65903541 Msa0085660:CDS
ACTGAAAGCTGAAGAACCAT+CGG 0.600098 1_2:+65902721 Msa0085660:CDS
GTGCAGGCATAAGAAGCAGA+AGG 0.601872 1_2:+65900167 Msa0085660:intron
TGGACAGAGTGAACAATCCA+TGG 0.605363 1_2:+65902691 Msa0085660:CDS
TTAAAACTGAAGGCCGAGGG+TGG 0.605393 1_2:+65901000 Msa0085660:CDS
GTGCACTAGGTAGCATAACA+TGG 0.607288 1_2:-65904004 None:intergenic
TGTACTCCTCAAAGGGCACC+CGG 0.607570 1_2:+65903674 Msa0085660:CDS
AAATAGAAAGCGAGGACATG+AGG 0.607787 1_2:+65902819 Msa0085660:CDS
CGTTTGCGTTGGAACTGTAG+TGG 0.607859 1_2:-65897778 None:intergenic
GAAAAGAAAAGATGACGCTA+CGG 0.608952 1_2:+65903484 Msa0085660:intron
CTCTACCAAAAGATCAAAGG+GGG 0.610959 1_2:+65902928 Msa0085660:CDS
GAAAACTGAAATAGAAAGCG+AGG 0.615849 1_2:+65902811 Msa0085660:CDS
TGCACTAGGTAGCATTAACA+TGG 0.616150 1_2:-65903886 None:intergenic
TCCTTTATATGACTCTGCGG+AGG 0.618388 1_2:+65902646 Msa0085660:CDS
TATTTAAAACTGAAGGCCGA+GGG 0.619845 1_2:+65900997 Msa0085660:CDS
TCCCATACTTATGAAACTCA+AGG 0.623281 1_2:+65901216 Msa0085660:CDS
GCAAAGGTTCGCTGCCTCTG+TGG 0.623435 1_2:+65901679 Msa0085660:CDS
ATTTAGACACCCATCTCCAC+AGG 0.625505 1_2:-65900244 None:intergenic
CAGTTTGTCATTGAATACTG+TGG 0.640591 1_2:+65901159 Msa0085660:CDS
CAAGAAAATGGAATGTCATG+GGG 0.642373 1_2:+65901569 Msa0085660:CDS
CATCAATTACGGATTAGATG+AGG 0.646637 1_2:-65903756 None:intergenic
GAACTCACGTCAAATGTTGG+TGG 0.647867 1_2:+65902671 Msa0085660:CDS
CAGGCATAAGAAGCAGAAGG+AGG 0.647886 1_2:+65900170 Msa0085660:intron
TGGTTGAATATTTAAAACAG+TGG 0.648383 1_2:-65902747 None:intergenic
ATTCGAAGTAACACTGCAGG+AGG 0.651046 1_2:+65902896 Msa0085660:CDS
AATGGGAAAATGGAAACGAA+GGG 0.653168 1_2:-65897916 None:intergenic
GGCAAATCTTCAGCAGCATG+AGG 0.654329 1_2:-65898081 None:intergenic
GATGATCCTGACAGTGCCTG+TGG 0.657570 1_2:+65900228 Msa0085660:CDS
CGTTGCAGAAGCGAGAAAAG+GGG 0.667050 1_2:-65897891 None:intergenic
AACATTTGAGCGCACCACAG+AGG 0.676482 1_2:-65901693 None:intergenic
GCCACAAGGGCAAAATCCAG+GGG 0.678890 1_2:-65900289 None:intergenic
AAGAAAATGGAATGTCATGG+GGG 0.698806 1_2:+65901570 Msa0085660:CDS
AATTCCTTTATATGACTCTG+CGG 0.704826 1_2:+65902643 Msa0085660:CDS
TCTCTACCAAAAGATCAAAG+GGG 0.725254 1_2:+65902927 Msa0085660:CDS
TCTACCAAAAGATCAAAGGG+GGG 0.735865 1_2:+65902929 Msa0085660:CDS
TTCCTGCCTAAAACTCAAGG+CGG 0.738527 1_2:+65903613 Msa0085660:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATTCTTTTGATATATTA+CGG + chr1_2:65901924-65901943 Msa0085660:intron 10.0%
!!! CATTTTCTTATCATTTATTT+AGG + chr1_2:65898163-65898182 Msa0085660:intron 15.0%
!! TTGTTAAAAATATTATCACT+CGG + chr1_2:65898247-65898266 Msa0085660:intron 15.0%
!!! TCAGTTTTATAAAGAAAAAA+AGG - chr1_2:65898524-65898543 None:intergenic 15.0%
!!! AAAAAATGCTCAAAATATTT+TGG - chr1_2:65899198-65899217 None:intergenic 15.0%
!! AAAGAAAAATAACCATATTA+AGG - chr1_2:65901079-65901098 None:intergenic 15.0%
!! AATCCTAATATTAAATGAAA+TGG + chr1_2:65901433-65901452 Msa0085660:intron 15.0%
!!! TCTTTTTCATTGATTATTAT+TGG + chr1_2:65902134-65902153 Msa0085660:intron 15.0%
!! ATTCTTTATACAATGAAATA+CGG + chr1_2:65903516-65903535 Msa0085660:CDS 15.0%
!! TATCATACAGTAAAATTTGT+TGG + chr1_2:65897725-65897744 Msa0085660:five_prime_UTR 20.0%
!!! TAAAATTTGTTGGTGAAAAA+GGG + chr1_2:65897735-65897754 Msa0085660:five_prime_UTR 20.0%
!! AAACAAAATTGTAAGAAAGA+GGG - chr1_2:65897998-65898017 None:intergenic 20.0%
!!! AAAATGATTTTTTTATGCGA+AGG + chr1_2:65898124-65898143 Msa0085660:CDS 20.0%
!! ATTACTGTTATGAGTTATTT+AGG + chr1_2:65898326-65898345 Msa0085660:intron 20.0%
!!! TTATGAGTTATTTAGGTTAT+AGG + chr1_2:65898333-65898352 Msa0085660:intron 20.0%
!! AATATTGAAAATTATTGGAC+CGG - chr1_2:65898446-65898465 None:intergenic 20.0%
!! AATTCAATATGGAAAAGTTT+CGG - chr1_2:65899030-65899049 None:intergenic 20.0%
!! TTTAGTAGAACTAAAACAAA+GGG - chr1_2:65899486-65899505 None:intergenic 20.0%
!! ATTTAGTAGAACTAAAACAA+AGG - chr1_2:65899487-65899506 None:intergenic 20.0%
!! CAGAACATTATATTGTATAT+AGG + chr1_2:65899828-65899847 Msa0085660:intron 20.0%
!!! AAAAAGTATGCAATGAAAAT+AGG - chr1_2:65900605-65900624 None:intergenic 20.0%
!! AAATTAAGGTAATCATATAC+TGG + chr1_2:65901042-65901061 Msa0085660:intron 20.0%
!! AATTAAGGTAATCATATACT+GGG + chr1_2:65901043-65901062 Msa0085660:intron 20.0%
!! TTTGTTTGTTTATTTCATAC+AGG + chr1_2:65901131-65901150 Msa0085660:intron 20.0%
!!! CATATGACTATAATTTTGAA+TGG + chr1_2:65901647-65901666 Msa0085660:CDS 20.0%
!! TTCAGTGTTAATAAATAATG+AGG + chr1_2:65901977-65901996 Msa0085660:intron 20.0%
!!! TTATGTAAGTTTTGATATAG+TGG + chr1_2:65902022-65902041 Msa0085660:intron 20.0%
!! AATAATCAATGAAAAAGAGA+AGG - chr1_2:65902132-65902151 None:intergenic 20.0%
!! AAAAAACTAAGCACAAAAAT+GGG - chr1_2:65902408-65902427 None:intergenic 20.0%
!! GTTCTTACAAATTATAACAA+GGG - chr1_2:65903221-65903240 None:intergenic 20.0%
!! TGTTCTTACAAATTATAACA+AGG - chr1_2:65903222-65903241 None:intergenic 20.0%
!! TTCATTGTATAAAGAATCAA+GGG - chr1_2:65903513-65903532 None:intergenic 20.0%
!! TTTCATTGTATAAAGAATCA+AGG - chr1_2:65903514-65903533 None:intergenic 20.0%
!!! AAATTTTGGATTTGTTTATC+AGG - chr1_2:65903851-65903870 None:intergenic 20.0%
!!! AAAATAACAGACACAAATTT+TGG - chr1_2:65903865-65903884 None:intergenic 20.0%
!!! AAAATAACAGACAAAGATTT+TGG - chr1_2:65903983-65904002 None:intergenic 20.0%
!!! GTAAAATTTGTTGGTGAAAA+AGG + chr1_2:65897734-65897753 Msa0085660:five_prime_UTR 25.0%
! TGATCGAAGAAATTTGAATA+GGG - chr1_2:65897838-65897857 None:intergenic 25.0%
! ATGATCGAAGAAATTTGAAT+AGG - chr1_2:65897839-65897858 None:intergenic 25.0%
! AATAACATGAGAAGAAAAGT+TGG - chr1_2:65897952-65897971 None:intergenic 25.0%
! TCTCATGTTATTCATTCATA+TGG + chr1_2:65897960-65897979 Msa0085660:exon 25.0%
! GAAACAAAATTGTAAGAAAG+AGG - chr1_2:65897999-65898018 None:intergenic 25.0%
! TGATTGATATGAATGTATTG+AGG - chr1_2:65898105-65898124 None:intergenic 25.0%
! TTCTATCTTCTACTTATGAT+TGG + chr1_2:65898201-65898220 Msa0085660:intron 25.0%
! TAACTGGTTATGTTAATTAC+TGG + chr1_2:65898279-65898298 Msa0085660:intron 25.0%
!! CAACTTTTCTGTATTCAATT+AGG + chr1_2:65898379-65898398 Msa0085660:intron 25.0%
! CAGCGAATATTGAAAATTAT+TGG - chr1_2:65898451-65898470 None:intergenic 25.0%
!! ATAATTTTCAATATTCGCTG+AGG + chr1_2:65898451-65898470 Msa0085660:intron 25.0%
!! GAAGACAAATCAATTTTTGT+TGG + chr1_2:65898542-65898561 Msa0085660:intron 25.0%
!! ACAAATCAATTTTTGTTGGT+GGG + chr1_2:65898546-65898565 Msa0085660:intron 25.0%
! AACATCGATCAATCAATTAA+CGG + chr1_2:65898694-65898713 Msa0085660:intron 25.0%
! TTGAAGAATATATCCATTGA+AGG - chr1_2:65898897-65898916 None:intergenic 25.0%
! ATATTCTTCAATGTAACTTC+CGG + chr1_2:65898906-65898925 Msa0085660:intron 25.0%
! AAAAAAATTGATATATCCGC+CGG - chr1_2:65899003-65899022 None:intergenic 25.0%
! ATTCAATATGGAAAAGTTTC+GGG - chr1_2:65899029-65899048 None:intergenic 25.0%
!! GTTTTATAATCAGAAAGAGA+GGG - chr1_2:65899127-65899146 None:intergenic 25.0%
! AGCTAGTGAACAAATAATAA+AGG - chr1_2:65899149-65899168 None:intergenic 25.0%
! AGGATATAATACAATTCGAT+TGG - chr1_2:65899956-65899975 None:intergenic 25.0%
! TCCTATTTAAATCCAAACAA+TGG + chr1_2:65899972-65899991 Msa0085660:intron 25.0%
! TCCATTGTTTGGATTTAAAT+AGG - chr1_2:65899976-65899995 None:intergenic 25.0%
!!! TTGCATATTTTTTTTTCGAG+AGG + chr1_2:65900481-65900500 Msa0085660:intron 25.0%
!! ATCTGAAGTAAAGTTTAAGT+AGG - chr1_2:65900639-65900658 None:intergenic 25.0%
! GAAAACGAGAATATTTCTTT+AGG - chr1_2:65900890-65900909 None:intergenic 25.0%
!! ACCAAGTTATTTAAAACTGA+AGG + chr1_2:65900990-65901009 Msa0085660:CDS 25.0%
! ATTAAGGTAATCATATACTG+GGG + chr1_2:65901044-65901063 Msa0085660:intron 25.0%
! CAAATAAATAAATGAGCGTA+TGG - chr1_2:65901115-65901134 None:intergenic 25.0%
! AATGGTTTATAAATCTTGCA+AGG - chr1_2:65901390-65901409 None:intergenic 25.0%
!!! ATTAGGATTTTTGTTTGAAG+AGG - chr1_2:65901422-65901441 None:intergenic 25.0%
! GGTCCATTTCATTTAATATT+AGG - chr1_2:65901439-65901458 None:intergenic 25.0%
!! GACTATAATTTTGAATGGTT+TGG + chr1_2:65901652-65901671 Msa0085660:CDS 25.0%
!!! TATAATTTTGAATGGTTTGG+AGG + chr1_2:65901655-65901674 Msa0085660:CDS 25.0%
!!! TCAAGCGTTTTAACATTTAT+AGG - chr1_2:65901781-65901800 None:intergenic 25.0%
! AAAAACTAAGCACAAAAATG+GGG - chr1_2:65902407-65902426 None:intergenic 25.0%
! CAAAAAACTAAGCACAAAAA+TGG - chr1_2:65902409-65902428 None:intergenic 25.0%
! AAATACTTTGAATTGCTTTC+AGG - chr1_2:65902452-65902471 None:intergenic 25.0%
!!! TTATATGGTTTTGGATAAAG+AGG - chr1_2:65902492-65902511 None:intergenic 25.0%
! TTGATATTGCAGAAGTTATA+TGG - chr1_2:65902507-65902526 None:intergenic 25.0%
!! TGGTTGAATATTTAAAACAG+TGG - chr1_2:65902750-65902769 None:intergenic 25.0%
! AGATGATGATATTCAGTAAT+TGG - chr1_2:65903084-65903103 None:intergenic 25.0%
! AACTACAAAGTTAAAATACC+AGG - chr1_2:65903146-65903165 None:intergenic 25.0%
!! GCCAAAATAATTGAATTTTC+AGG + chr1_2:65903316-65903335 Msa0085660:intron 25.0%
!! GCCTGAAAATTCAATTATTT+TGG - chr1_2:65903320-65903339 None:intergenic 25.0%
!! TGATTGTCATTTATATTCTC+TGG + chr1_2:65903426-65903445 Msa0085660:intron 25.0%
! ATTCTGTGAATCATCAATTA+CGG - chr1_2:65903770-65903789 None:intergenic 25.0%
! CTATGTTCTGTTATGAATTT+CGG - chr1_2:65903944-65903963 None:intergenic 25.0%
!!! AGATTTTGGATTTGTTTATC+AGG - chr1_2:65903969-65903988 None:intergenic 25.0%
! AAGAAGAGTTTAGTTTCTAG+CGG + chr1_2:65897802-65897821 Msa0085660:five_prime_UTR 30.0%
GTATTCAATTAGGCTTACTT+TGG + chr1_2:65898389-65898408 Msa0085660:intron 30.0%
!! TTGGATTAGTTTCTCTCTTA+TGG + chr1_2:65898408-65898427 Msa0085660:intron 30.0%
! ATTAGTTTCTCTCTTATGGT+AGG + chr1_2:65898412-65898431 Msa0085660:intron 30.0%
! GACAAATCAATTTTTGTTGG+TGG + chr1_2:65898545-65898564 Msa0085660:intron 30.0%
AATTGATTGATCGATGTTAC+CGG - chr1_2:65898692-65898711 None:intergenic 30.0%
TATATCCATTGAAGGAAGAT+TGG - chr1_2:65898889-65898908 None:intergenic 30.0%
!!! TATTTTGACCTATGTCATAC+TGG + chr1_2:65898951-65898970 Msa0085660:intron 30.0%
!! ATTTTGACCTATGTCATACT+GGG + chr1_2:65898952-65898971 Msa0085660:intron 30.0%
AATGAAAATATCCACTAGCT+GGG - chr1_2:65899058-65899077 None:intergenic 30.0%
AAATGAAAATATCCACTAGC+TGG - chr1_2:65899059-65899078 None:intergenic 30.0%
!! GGTTTTATAATCAGAAAGAG+AGG - chr1_2:65899128-65899147 None:intergenic 30.0%
! AGTGCTTGTATTTGTTAGAT+AGG + chr1_2:65899249-65899268 Msa0085660:intron 30.0%
ACATTAAAGATGAAAGAGAG+AGG - chr1_2:65899322-65899341 None:intergenic 30.0%
AGTAAAAACCATCATTCTCA+TGG + chr1_2:65899416-65899435 Msa0085660:intron 30.0%
GTAAAAACCATCATTCTCAT+GGG + chr1_2:65899417-65899436 Msa0085660:intron 30.0%
! TCTAGAGAGTTTACTCTTTT+AGG - chr1_2:65899591-65899610 None:intergenic 30.0%
! TAGTGCGATATTTGATTTCA+GGG - chr1_2:65899685-65899704 None:intergenic 30.0%
ATATTGCTATATGTGAATGC+AGG + chr1_2:65900196-65900215 Msa0085660:CDS 30.0%
! AACTCACCTGATTTTTACAA+AGG - chr1_2:65900317-65900336 None:intergenic 30.0%
CTTGTAGAACAAAATAACCA+GGG - chr1_2:65900537-65900556 None:intergenic 30.0%
ACTTGTAGAACAAAATAACC+AGG - chr1_2:65900538-65900557 None:intergenic 30.0%
TTCTAGTCAGTTAACTTAAC+TGG + chr1_2:65900724-65900743 Msa0085660:intron 30.0%
! AACTTTTCTTCTAAGTAGTG+CGG + chr1_2:65900820-65900839 Msa0085660:intron 30.0%
GCTATAGATATCATTGCAAT+CGG + chr1_2:65900842-65900861 Msa0085660:intron 30.0%
!!! GCCTTCAGTTTTAAATAACT+TGG - chr1_2:65900994-65901013 None:intergenic 30.0%
TTTGTTTATTTCATACAGGC+AGG + chr1_2:65901135-65901154 Msa0085660:intron 30.0%
ACCTTGAGTTTCATAAGTAT+GGG - chr1_2:65901220-65901239 None:intergenic 30.0%
!! AAACTTTTGTTTGCTTTTGC+AGG + chr1_2:65901298-65901317 Msa0085660:intron 30.0%
TCTATTGATGCAACTAGAAA+AGG + chr1_2:65901361-65901380 Msa0085660:CDS 30.0%
CAAGATTTATAAACCATTCC+TGG + chr1_2:65901392-65901411 Msa0085660:CDS 30.0%
AAATAGGAGGATAACAAAAC+AGG - chr1_2:65901485-65901504 None:intergenic 30.0%
ACAAGAAAATGGAATGTCAT+GGG + chr1_2:65901568-65901587 Msa0085660:CDS 30.0%
! AGTTAAGCCTTTTAAATGCA+TGG + chr1_2:65901827-65901846 Msa0085660:intron 30.0%
! GTTAAGCCTTTTAAATGCAT+GGG + chr1_2:65901828-65901847 Msa0085660:intron 30.0%
GTGTTAATAAATAATGAGGC+AGG + chr1_2:65901981-65902000 Msa0085660:intron 30.0%
AAAACTAAGCACAAAAATGG+GGG - chr1_2:65902406-65902425 None:intergenic 30.0%
! TTGCAGAAGTTATATGGTTT+TGG - chr1_2:65902501-65902520 None:intergenic 30.0%
TCATATTTCTTGTCATATCC+TGG + chr1_2:65902572-65902591 Msa0085660:intron 30.0%
!! ATATCCTGGTTTGTAAGTTT+TGG + chr1_2:65902586-65902605 Msa0085660:intron 30.0%
TAAACCAAAACTTACAAACC+AGG - chr1_2:65902593-65902612 None:intergenic 30.0%
AATTCCTTTATATGACTCTG+CGG + chr1_2:65902643-65902662 Msa0085660:CDS 30.0%
ATTCAACCACTGAATTCAAT+TGG + chr1_2:65902761-65902780 Msa0085660:CDS 30.0%
TTCAACCACTGAATTCAATT+GGG + chr1_2:65902762-65902781 Msa0085660:CDS 30.0%
GCTTTCAATTATGTTACTAG+TGG + chr1_2:65903105-65903124 Msa0085660:intron 30.0%
! TTGATGATTCACAGAATACA+TGG + chr1_2:65903773-65903792 Msa0085660:three_prime_UTR 30.0%
CGAAATTCATAACAGAACAT+AGG + chr1_2:65903942-65903961 Msa0085660:three_prime_UTR 30.0%
AATGGGAAAATGGAAACGAA+GGG - chr1_2:65897919-65897938 None:intergenic 35.0%
CAATAAGAGGAATGGGAAAA+TGG - chr1_2:65897929-65897948 None:intergenic 35.0%
AAGTTGGCAATAAGAGGAAT+GGG - chr1_2:65897936-65897955 None:intergenic 35.0%
AAAGTTGGCAATAAGAGGAA+TGG - chr1_2:65897937-65897956 None:intergenic 35.0%
GAAGAAAAGTTGGCAATAAG+AGG - chr1_2:65897942-65897961 None:intergenic 35.0%
TCACATAAAGTCGAACATGA+AGG - chr1_2:65898021-65898040 None:intergenic 35.0%
!!! GACTTTTTTATCTGCGTATG+AGG + chr1_2:65898498-65898517 Msa0085660:intron 35.0%
ATTGAGAAGAGAACCTACAA+GGG - chr1_2:65898611-65898630 None:intergenic 35.0%
AATTGAGAAGAGAACCTACA+AGG - chr1_2:65898612-65898631 None:intergenic 35.0%
ATTGATTGATCGATGTTACC+GGG - chr1_2:65898691-65898710 None:intergenic 35.0%
ATCGATCAATCAATTAACGG+CGG + chr1_2:65898697-65898716 Msa0085660:intron 35.0%
TTGAAGGAAGATTGGACAAT+GGG - chr1_2:65898881-65898900 None:intergenic 35.0%
ATTGAAGGAAGATTGGACAA+TGG - chr1_2:65898882-65898901 None:intergenic 35.0%
ATTGTCCAATCTTCCTTCAA+TGG + chr1_2:65898881-65898900 Msa0085660:intron 35.0%
GCTGGGAGATTAATTCAATA+TGG - chr1_2:65899041-65899060 None:intergenic 35.0%
AAAGAGAGGGATAAGAGAAT+TGG - chr1_2:65899114-65899133 None:intergenic 35.0%
!!! AAAATATTTTGGTTGCGAGG+CGG - chr1_2:65899187-65899206 None:intergenic 35.0%
!!! CTCAAAATATTTTGGTTGCG+AGG - chr1_2:65899190-65899209 None:intergenic 35.0%
TGTACTCTTACAAAAGCAGA+GGG - chr1_2:65899299-65899318 None:intergenic 35.0%
ACTAAAGATCCAGCATAAGT+GGG - chr1_2:65899456-65899475 None:intergenic 35.0%
! CTTTTAGGCGAATAGCAATA+AGG - chr1_2:65899576-65899595 None:intergenic 35.0%
TAGAAATTTCATCCGACTTC+TGG + chr1_2:65899607-65899626 Msa0085660:intron 35.0%
TGACTAAAAACTATCCCACA+AGG - chr1_2:65899633-65899652 None:intergenic 35.0%
!!! TGGGATAGTTTTTAGTCAGT+GGG + chr1_2:65899635-65899654 Msa0085660:intron 35.0%
!! TTTTTAGTCAGTGGGATAGA+AGG + chr1_2:65899643-65899662 Msa0085660:intron 35.0%
! GATATTTGATTTCAGGGCAT+TGG - chr1_2:65899679-65899698 None:intergenic 35.0%
! CTAGTGCGATATTTGATTTC+AGG - chr1_2:65899686-65899705 None:intergenic 35.0%
TTATGAGTTCGTCAACAGAA+TGG - chr1_2:65899726-65899745 None:intergenic 35.0%
TTCTGTATTATGAAGCAGGA+AGG - chr1_2:65899778-65899797 None:intergenic 35.0%
CATAATACAGAAGAGGAAGT+TGG + chr1_2:65899786-65899805 Msa0085660:intron 35.0%
TGAGGGATCTAAATTCCAAT+GGG - chr1_2:65900006-65900025 None:intergenic 35.0%
! TTTTACAAAGGATGCCACAA+GGG - chr1_2:65900305-65900324 None:intergenic 35.0%
! TTTTTACAAAGGATGCCACA+AGG - chr1_2:65900306-65900325 None:intergenic 35.0%
TGGCATCCTTTGTAAAAATC+AGG + chr1_2:65900308-65900327 Msa0085660:CDS 35.0%
TATTTGTATTCTGCTTTCCC+TGG + chr1_2:65900517-65900536 Msa0085660:intron 35.0%
GTTAACTTAACTGGCATAAC+TGG + chr1_2:65900733-65900752 Msa0085660:intron 35.0%
TAGCAGTCTGTAGTTACAAT+TGG + chr1_2:65900786-65900805 Msa0085660:intron 35.0%
! TTATTTAAAACTGAAGGCCG+AGG + chr1_2:65900996-65901015 Msa0085660:CDS 35.0%
! TATTTAAAACTGAAGGCCGA+GGG + chr1_2:65900997-65901016 Msa0085660:CDS 35.0%
TTTGGCTGATGAGGAAATTA+AGG + chr1_2:65901028-65901047 Msa0085660:CDS 35.0%
ATCATATACTGGGGAAATTC+AGG + chr1_2:65901053-65901072 Msa0085660:intron 35.0%
CAGTTTGTCATTGAATACTG+TGG + chr1_2:65901159-65901178 Msa0085660:CDS 35.0%
TCCCATACTTATGAAACTCA+AGG + chr1_2:65901216-65901235 Msa0085660:CDS 35.0%
GACCTTGAGTTTCATAAGTA+TGG - chr1_2:65901221-65901240 None:intergenic 35.0%
TTTGTTTGAAGAGGTTTACC+AGG - chr1_2:65901413-65901432 None:intergenic 35.0%
TACAATACTTGCATATTGGC+AGG - chr1_2:65901460-65901479 None:intergenic 35.0%
GGTCTACAATACTTGCATAT+TGG - chr1_2:65901464-65901483 None:intergenic 35.0%
! TTCAGTTGATGTCAAACCTT+GGG - chr1_2:65901515-65901534 None:intergenic 35.0%
! ATTCAGTTGATGTCAAACCT+TGG - chr1_2:65901516-65901535 None:intergenic 35.0%
! CATTTTCTTGTCTCACAGTT+TGG - chr1_2:65901559-65901578 None:intergenic 35.0%
CAAACTGTGAGACAAGAAAA+TGG + chr1_2:65901557-65901576 Msa0085660:CDS 35.0%
GACAAGAAAATGGAATGTCA+TGG + chr1_2:65901567-65901586 Msa0085660:CDS 35.0%
CAAGAAAATGGAATGTCATG+GGG + chr1_2:65901569-65901588 Msa0085660:CDS 35.0%
AAGAAAATGGAATGTCATGG+GGG + chr1_2:65901570-65901589 Msa0085660:CDS 35.0%
AAGAGTTGGAATATTTGCAC+TGG + chr1_2:65901597-65901616 Msa0085660:CDS 35.0%
TATTCCTATTGGAACTGAAC+TGG + chr1_2:65901624-65901643 Msa0085660:CDS 35.0%
! CTCAAATGTTCTGAATTCCT+TGG + chr1_2:65901706-65901725 Msa0085660:CDS 35.0%
ATCATGCCCATGCATTTAAA+AGG - chr1_2:65901837-65901856 None:intergenic 35.0%
! TAGTGGGTCTTAAAAACTCA+TGG - chr1_2:65901875-65901894 None:intergenic 35.0%
TCACCTTTCAAGCTATTAGT+GGG - chr1_2:65901891-65901910 None:intergenic 35.0%
ATCACCTTTCAAGCTATTAG+TGG - chr1_2:65901892-65901911 None:intergenic 35.0%
ACTAATAGCTTGAAAGGTGA+TGG + chr1_2:65901891-65901910 Msa0085660:intron 35.0%
! TTCCTCGTGTTTGGAATAAT+CGG + chr1_2:65902177-65902196 Msa0085660:intron 35.0%
GTGCTGTATTCATCTCTAAA+AGG + chr1_2:65902264-65902283 Msa0085660:intron 35.0%
! TCGTTTTATCTGTTACTGAC+TGG + chr1_2:65902293-65902312 Msa0085660:intron 35.0%
TGCTAGGATCTCATCATTAT+GGG - chr1_2:65902357-65902376 None:intergenic 35.0%
ATAATGATGAGATCCTAGCA+CGG + chr1_2:65902357-65902376 Msa0085660:intron 35.0%
!!! ATGGTTTTGGATAAAGAGGA+AGG - chr1_2:65902488-65902507 None:intergenic 35.0%
AGCTTTCAGTATAATAGCCA+TGG - chr1_2:65902711-65902730 None:intergenic 35.0%
TTGATCCCAATTGAATTCAG+TGG - chr1_2:65902770-65902789 None:intergenic 35.0%
CTGAATTCAATTGGGATCAA+TGG + chr1_2:65902770-65902789 Msa0085660:CDS 35.0%
GAAAACTGAAATAGAAAGCG+AGG + chr1_2:65902811-65902830 Msa0085660:CDS 35.0%
AAGATCCTGTTTGGTATCTT+GGG - chr1_2:65902852-65902871 None:intergenic 35.0%
! CTTTGATCTTTTGGTAGAGA+CGG - chr1_2:65902927-65902946 None:intergenic 35.0%
GTCTCTACCAAAAGATCAAA+GGG + chr1_2:65902926-65902945 Msa0085660:CDS 35.0%
TCTCTACCAAAAGATCAAAG+GGG + chr1_2:65902927-65902946 Msa0085660:CDS 35.0%
! GGAGGAGATTTTAGATTATG+AGG + chr1_2:65903027-65903046 Msa0085660:CDS 35.0%
TGGACTAAAACTTAGTTACC+TGG + chr1_2:65903125-65903144 Msa0085660:intron 35.0%
! TGTCATTTCATAGTACGATC+TGG + chr1_2:65903191-65903210 Msa0085660:intron 35.0%
ATGAGAACTGTCATGAATCA+CGG + chr1_2:65903349-65903368 Msa0085660:intron 35.0%
AAACGACAATGAAGCATGTA+CGG - chr1_2:65903390-65903409 None:intergenic 35.0%
! GTCATCTTTTCTTTTCTGCA+TGG - chr1_2:65903480-65903499 None:intergenic 35.0%
GAAAAGAAAAGATGACGCTA+CGG + chr1_2:65903484-65903503 Msa0085660:intron 35.0%
! AATGAAGCTTTTGACGTTCT+CGG + chr1_2:65903733-65903752 Msa0085660:CDS 35.0%
!! CATCAATTACGGATTAGATG+AGG - chr1_2:65903759-65903778 None:intergenic 35.0%
CTAGGTTCTGTTATGAACTT+CGG - chr1_2:65903826-65903845 None:intergenic 35.0%
AATGTTCTCAAAGTTAGTGC+TGG - chr1_2:65903912-65903931 None:intergenic 35.0%
GAATGGGAAAATGGAAACGA+AGG - chr1_2:65897920-65897939 None:intergenic 40.0%
TCGATTGAGACAGAGAGTAA+AGG + chr1_2:65898768-65898787 Msa0085660:intron 40.0%
GGGATCTTTACCTAATGATG+CGG - chr1_2:65898860-65898879 None:intergenic 40.0%
TGAAGGAAGATTGGACAATG+GGG - chr1_2:65898880-65898899 None:intergenic 40.0%
ATTAGCTACGCGATTCTTAC+CGG - chr1_2:65898928-65898947 None:intergenic 40.0%
GCTGGTAGAGTTTGTATATG+TGG - chr1_2:65898981-65899000 None:intergenic 40.0%
CATATACAAACTCTACCAGC+CGG + chr1_2:65898981-65899000 Msa0085660:intron 40.0%
TGAATTAATCTCCCAGCTAG+TGG + chr1_2:65899044-65899063 Msa0085660:intron 40.0%
AGCACTGCGCAAGATTAATT+TGG - chr1_2:65899235-65899254 None:intergenic 40.0%
GTGTACTCTTACAAAAGCAG+AGG - chr1_2:65899300-65899319 None:intergenic 40.0%
ATAGCTTGAACTGTGATAGC+AGG + chr1_2:65899354-65899373 Msa0085660:intron 40.0%
ACTTTGTAAAGCTGTCCTGA+CGG - chr1_2:65899399-65899418 None:intergenic 40.0%
CTAAAGATCCAGCATAAGTG+GGG - chr1_2:65899455-65899474 None:intergenic 40.0%
CACTAAAGATCCAGCATAAG+TGG - chr1_2:65899457-65899476 None:intergenic 40.0%
!!! GTGGGATAGTTTTTAGTCAG+TGG + chr1_2:65899634-65899653 Msa0085660:intron 40.0%
GAATGGAATTGGAAGTGAAG+TGG - chr1_2:65899709-65899728 None:intergenic 40.0%
GTTCGTCAACAGAATGGAAT+TGG - chr1_2:65899720-65899739 None:intergenic 40.0%
! ACTAGATAACTTGTGACAGC+GGG - chr1_2:65899754-65899773 None:intergenic 40.0%
! CACTAGATAACTTGTGACAG+CGG - chr1_2:65899755-65899774 None:intergenic 40.0%
CCTCTTCTGTATTATGAAGC+AGG - chr1_2:65899782-65899801 None:intergenic 40.0%
CCTGCTTCATAATACAGAAG+AGG + chr1_2:65899779-65899798 Msa0085660:intron 40.0%
! CAAATCAAAGGGTACAAGGT+TGG - chr1_2:65899892-65899911 None:intergenic 40.0%
CAACCTTGTACCCTTTGATT+TGG + chr1_2:65899890-65899909 Msa0085660:intron 40.0%
!! CTTGTACCCTTTGATTTGGA+GGG + chr1_2:65899894-65899913 Msa0085660:intron 40.0%
TTCCTACCCTCCAAATCAAA+GGG - chr1_2:65899903-65899922 None:intergenic 40.0%
TTTCCTACCCTCCAAATCAA+AGG - chr1_2:65899904-65899923 None:intergenic 40.0%
!! TTTGATTTGGAGGGTAGGAA+AGG + chr1_2:65899903-65899922 Msa0085660:intron 40.0%
GTGAGGGATCTAAATTCCAA+TGG - chr1_2:65900007-65900026 None:intergenic 40.0%
CTTTGAATTGGTGGAATTGG+TGG - chr1_2:65900029-65900048 None:intergenic 40.0%
CACCAATTCCACCAATTCAA+AGG + chr1_2:65900027-65900046 Msa0085660:intron 40.0%
AGCCTTTGAATTGGTGGAAT+TGG - chr1_2:65900032-65900051 None:intergenic 40.0%
TTCCACCAATTCAAAGGCTA+TGG + chr1_2:65900033-65900052 Msa0085660:intron 40.0%
ATAGGCCATAGCCTTTGAAT+TGG - chr1_2:65900041-65900060 None:intergenic 40.0%
AATTCAAAGGCTATGGCCTA+TGG + chr1_2:65900040-65900059 Msa0085660:intron 40.0%
! CATTCGATTTTCCATTCCTC+TGG - chr1_2:65900079-65900098 None:intergenic 40.0%
ACTTCTCTTTATCTCTGTGC+AGG + chr1_2:65900151-65900170 Msa0085660:intron 40.0%
AAATCAGGTGAGTTCGTGTT+TGG + chr1_2:65900323-65900342 Msa0085660:intron 40.0%
AATCAGGTGAGTTCGTGTTT+GGG + chr1_2:65900324-65900343 Msa0085660:intron 40.0%
!! CTTTTTAACTACCTGCAGGA+TGG - chr1_2:65900389-65900408 None:intergenic 40.0%
!! CCAACTTTTTAACTACCTGC+AGG - chr1_2:65900393-65900412 None:intergenic 40.0%
CCTGCAGGTAGTTAAAAAGT+TGG + chr1_2:65900390-65900409 Msa0085660:intron 40.0%
ATTTCTGCAAGCATGAGACA+TGG - chr1_2:65900947-65900966 None:intergenic 40.0%
GGGAAATTCAGGCCTTAATA+TGG + chr1_2:65901064-65901083 Msa0085660:intron 40.0%
!! GTTTGCTTTTGCAGGTCTTA+AGG + chr1_2:65901306-65901325 Msa0085660:intron 40.0%
TTGAAGAGGTTTACCAGGAA+TGG - chr1_2:65901408-65901427 None:intergenic 40.0%
GCACTGGAAGATATTCCTAT+TGG + chr1_2:65901613-65901632 Msa0085660:CDS 40.0%
TATGCCAGTTCAGTTCCAAT+AGG - chr1_2:65901631-65901650 None:intergenic 40.0%
AGACCCACTAATAGCTTGAA+AGG + chr1_2:65901885-65901904 Msa0085660:intron 40.0%
AGCAGGAGGATACTTATCTA+TGG + chr1_2:65902200-65902219 Msa0085660:intron 40.0%
GCAGGAGGATACTTATCTAT+GGG + chr1_2:65902201-65902220 Msa0085660:intron 40.0%
! TATGGGAAGATGATGATGAC+AGG + chr1_2:65902218-65902237 Msa0085660:CDS 40.0%
ATCTCATCATTATGGGGTCT+TGG - chr1_2:65902350-65902369 None:intergenic 40.0%
GCTAGGATCTCATCATTATG+GGG - chr1_2:65902356-65902375 None:intergenic 40.0%
GTGCTAGGATCTCATCATTA+TGG - chr1_2:65902358-65902377 None:intergenic 40.0%
GATGAACTCACGTCAAATGT+TGG + chr1_2:65902668-65902687 Msa0085660:CDS 40.0%
ACTGAAAGCTGAAGAACCAT+CGG + chr1_2:65902721-65902740 Msa0085660:CDS 40.0%
! TTTAAAACAGTGGACTCCGA+TGG - chr1_2:65902740-65902759 None:intergenic 40.0%
TCAATTGGGATCAATGGCTT+AGG + chr1_2:65902776-65902795 Msa0085660:CDS 40.0%
AAATAGAAAGCGAGGACATG+AGG + chr1_2:65902819-65902838 Msa0085660:CDS 40.0%
GAAGATCCTGTTTGGTATCT+TGG - chr1_2:65902853-65902872 None:intergenic 40.0%
!! TTTTTGGGGAAGATCCTGTT+TGG - chr1_2:65902861-65902880 None:intergenic 40.0%
!!! CGCGATATCGCATTTTTTTG+GGG - chr1_2:65902875-65902894 None:intergenic 40.0%
!!! GCGCGATATCGCATTTTTTT+GGG - chr1_2:65902876-65902895 None:intergenic 40.0%
!!! TGCGCGATATCGCATTTTTT+TGG - chr1_2:65902877-65902896 None:intergenic 40.0%
CGTCTCTACCAAAAGATCAA+AGG + chr1_2:65902925-65902944 Msa0085660:CDS 40.0%
CTCTACCAAAAGATCAAAGG+GGG + chr1_2:65902928-65902947 Msa0085660:CDS 40.0%
TCTACCAAAAGATCAAAGGG+GGG + chr1_2:65902929-65902948 Msa0085660:CDS 40.0%
ATTGATGCAAAGTATGCAGC+TGG + chr1_2:65902980-65902999 Msa0085660:CDS 40.0%
GTGCTTCCTTTGATGCTAAA+AGG - chr1_2:65903006-65903025 None:intergenic 40.0%
! TTTAGCATCAAAGGAAGCAC+AGG + chr1_2:65903006-65903025 Msa0085660:CDS 40.0%
TGACAGATGATGTGTGCATT+TGG - chr1_2:65903265-65903284 None:intergenic 40.0%
ATCCTTCTCGTGTTCTTCAA+TGG - chr1_2:65903546-65903565 None:intergenic 40.0%
TGTCGTAGATACACTGTCTT+GGG - chr1_2:65903570-65903589 None:intergenic 40.0%
! ATGTTGCTTGTACTCCTCAA+AGG + chr1_2:65903666-65903685 Msa0085660:CDS 40.0%
! TGTTGCTTGTACTCCTCAAA+GGG + chr1_2:65903667-65903686 Msa0085660:CDS 40.0%
CGAAGTTCATAACAGAACCT+AGG + chr1_2:65903824-65903843 Msa0085660:three_prime_UTR 40.0%
! GGATTTGTTTATCAGGTCCT+AGG - chr1_2:65903844-65903863 None:intergenic 40.0%
TGCACTAGGTAGCATTAACA+TGG - chr1_2:65903889-65903908 None:intergenic 40.0%
! GTTGGTGAAAAAGGGTAGTG+AGG + chr1_2:65897743-65897762 Msa0085660:five_prime_UTR 45.0%
AACTCTTCTTGCGTTTGCGT+TGG - chr1_2:65897792-65897811 None:intergenic 45.0%
TTGCGGGTGTGAAAGTGAAA+CGG - chr1_2:65897870-65897889 None:intergenic 45.0%
ACGTTGCAGAAGCGAGAAAA+GGG - chr1_2:65897895-65897914 None:intergenic 45.0%
AACGTTGCAGAAGCGAGAAA+AGG - chr1_2:65897896-65897915 None:intergenic 45.0%
CACTCGGTAGCATTACTAAC+TGG + chr1_2:65898263-65898282 Msa0085660:intron 45.0%
TCTCTCTTATGGTAGGTTCC+AGG + chr1_2:65898419-65898438 Msa0085660:intron 45.0%
GAAAATTATTGGACCGGACC+TGG - chr1_2:65898440-65898459 None:intergenic 45.0%
ACCACTGAATCCCTTGCTTT+CGG - chr1_2:65898572-65898591 None:intergenic 45.0%
! GATTCAGTGGTCTTACCCTT+GGG + chr1_2:65898581-65898600 Msa0085660:intron 45.0%
CAGGCACTCGATTGACATAA+AGG - chr1_2:65898729-65898748 None:intergenic 45.0%
TAAACAGCTGAGTCCGAGAT+TGG + chr1_2:65898802-65898821 Msa0085660:intron 45.0%
AAACAGCTGAGTCCGAGATT+GGG + chr1_2:65898803-65898822 Msa0085660:intron 45.0%
! GCTAGTTCTTCTCCCAATCT+CGG - chr1_2:65898818-65898837 None:intergenic 45.0%
CTAATGATGCGGAGCGAATT+CGG - chr1_2:65898849-65898868 None:intergenic 45.0%
AAATTGATATATCCGCCGGC+TGG - chr1_2:65898999-65899018 None:intergenic 45.0%
TGCATAGCCCATGAGAATGA+TGG - chr1_2:65899427-65899446 None:intergenic 45.0%
TTAGTCAGTGGGATAGAAGG+TGG + chr1_2:65899646-65899665 Msa0085660:intron 45.0%
! CCTCCAAATCAAAGGGTACA+AGG - chr1_2:65899896-65899915 None:intergenic 45.0%
!! CCTTGTACCCTTTGATTTGG+AGG + chr1_2:65899893-65899912 Msa0085660:intron 45.0%
!! TACCCTTTGATTTGGAGGGT+AGG + chr1_2:65899898-65899917 Msa0085660:intron 45.0%
AGGTGGAGTGTGGAGTATAA+TGG + chr1_2:65899923-65899942 Msa0085660:intron 45.0%
!! TGGGCTGGTATTCCATTGTT+TGG - chr1_2:65899987-65900006 None:intergenic 45.0%
ACAATGGAATACCAGCCCAT+TGG + chr1_2:65899988-65900007 Msa0085660:intron 45.0%
GGATCTAAATTCCAATGGGC+TGG - chr1_2:65900002-65900021 None:intergenic 45.0%
!! ATTGGTGGAATTGGTGGTGA+GGG - chr1_2:65900023-65900042 None:intergenic 45.0%
!! AATTGGTGGAATTGGTGGTG+AGG - chr1_2:65900024-65900043 None:intergenic 45.0%
ATTTAGACACCCATCTCCAC+AGG - chr1_2:65900247-65900266 None:intergenic 45.0%
GCTTTAACCTGTGTCTCTGA+AGG + chr1_2:65900442-65900461 Msa0085660:intron 45.0%
ATAAGTATGGGATCTGCGCT+TGG - chr1_2:65901208-65901227 None:intergenic 45.0%
! AGTTGATGTCAAACCTTGGG+CGG - chr1_2:65901512-65901531 None:intergenic 45.0%
GTCATGGGGGAAATAAGAGT+TGG + chr1_2:65901583-65901602 Msa0085660:CDS 45.0%
! TGAATGGTTTGGAGGTGCAA+AGG + chr1_2:65901663-65901682 Msa0085660:CDS 45.0%
TTCCTTGGAGCAAAATCTCG+TGG + chr1_2:65901721-65901740 Msa0085660:CDS 45.0%
! AACCACGAGATTTTGCTCCA+AGG - chr1_2:65901726-65901745 None:intergenic 45.0%
! TAGCTTGAAAGGTGATGGCT+AGG + chr1_2:65901896-65901915 Msa0085660:intron 45.0%
CTACTCTTCTTCCTCGTGTT+TGG + chr1_2:65902168-65902187 Msa0085660:intron 45.0%
CTCCGATTATTCCAAACACG+AGG - chr1_2:65902182-65902201 None:intergenic 45.0%
! GTGTTTGGAATAATCGGAGC+AGG + chr1_2:65902183-65902202 Msa0085660:intron 45.0%
! TTTGGAATAATCGGAGCAGG+AGG + chr1_2:65902186-65902205 Msa0085660:intron 45.0%
TCATTATGGGGTCTTGGAGT+GGG - chr1_2:65902344-65902363 None:intergenic 45.0%
ATCATTATGGGGTCTTGGAG+TGG - chr1_2:65902345-65902364 None:intergenic 45.0%
TCCTTTATATGACTCTGCGG+AGG + chr1_2:65902646-65902665 Msa0085660:CDS 45.0%
TCCTCCGCAGAGTCATATAA+AGG - chr1_2:65902650-65902669 None:intergenic 45.0%
GAACTCACGTCAAATGTTGG+TGG + chr1_2:65902671-65902690 Msa0085660:CDS 45.0%
TGGACAGAGTGAACAATCCA+TGG + chr1_2:65902691-65902710 Msa0085660:CDS 45.0%
GTACTCCCAAGATACCAAAC+AGG + chr1_2:65902844-65902863 Msa0085660:CDS 45.0%
ATTCGAAGTAACACTGCAGG+AGG + chr1_2:65902896-65902915 Msa0085660:CDS 45.0%
! CTTTCCCCCCTTTGATCTTT+TGG - chr1_2:65902936-65902955 None:intergenic 45.0%
!!! AGCTGGCCTTTTAGCATCAA+AGG + chr1_2:65902997-65903016 Msa0085660:CDS 45.0%
TTCTCGTGTTCTTCAATGGC+AGG - chr1_2:65903542-65903561 None:intergenic 45.0%
TGCCATTGAAGAACACGAGA+AGG + chr1_2:65903541-65903560 Msa0085660:CDS 45.0%
CTGTCGTAGATACACTGTCT+TGG - chr1_2:65903571-65903590 None:intergenic 45.0%
AGTAGCAGAGAAGTGGATAC+AGG + chr1_2:65903589-65903608 Msa0085660:CDS 45.0%
TTCCTGCCTAAAACTCAAGG+CGG + chr1_2:65903613-65903632 Msa0085660:CDS 45.0%
! CAAACTCCGCCTTGAGTTTT+AGG - chr1_2:65903622-65903641 None:intergenic 45.0%
! TTCAGTACCTTTTGCTTGGC+CGG - chr1_2:65903696-65903715 None:intergenic 45.0%
! CGACTTCAGTACCTTTTGCT+TGG - chr1_2:65903700-65903719 None:intergenic 45.0%
!! AAAGTTAGTGCTGGTGCACT+AGG - chr1_2:65903903-65903922 None:intergenic 45.0%
GTGCACTAGGTAGCATAACA+TGG - chr1_2:65904007-65904026 None:intergenic 45.0%
!!! TATTATTATTATTAATTTGA+AGG + chr1_2:65898056-65898075 Msa0085660:intron 5.0%
!! TAAATTATTAAAATAATCTT+TGG - chr1_2:65903169-65903188 None:intergenic 5.0%
CGTTGGAACTGTAGTGGTAG+CGG - chr1_2:65897775-65897794 None:intergenic 50.0%
CGTTTGCGTTGGAACTGTAG+TGG - chr1_2:65897781-65897800 None:intergenic 50.0%
AAGCGAGAAAAGGGGTTTGC+GGG - chr1_2:65897886-65897905 None:intergenic 50.0%
GAAGCGAGAAAAGGGGTTTG+CGG - chr1_2:65897887-65897906 None:intergenic 50.0%
CGTTGCAGAAGCGAGAAAAG+GGG - chr1_2:65897894-65897913 None:intergenic 50.0%
GGCAAATCTTCAGCAGCATG+AGG - chr1_2:65898084-65898103 None:intergenic 50.0%
CTTATGGTAGGTTCCAGGTC+CGG + chr1_2:65898424-65898443 Msa0085660:intron 50.0%
! GGATTCAGTGGTCTTACCCT+TGG + chr1_2:65898580-65898599 Msa0085660:intron 50.0%
AGAAGAGAACCTACAAGGGC+CGG - chr1_2:65898607-65898626 None:intergenic 50.0%
GCCTGACTTCTCTATCTGAC+CGG + chr1_2:65898744-65898763 Msa0085660:intron 50.0%
ACTCTCTGTCTCAATCGAGC+CGG - chr1_2:65898766-65898785 None:intergenic 50.0%
! CAGAGAGTAAAGGCGCGAAT+CGG + chr1_2:65898778-65898797 Msa0085660:intron 50.0%
CGAATTCGCTCCGCATCATT+AGG + chr1_2:65898847-65898866 Msa0085660:intron 50.0%
ATACAAACTCTACCAGCCGG+CGG + chr1_2:65898984-65899003 Msa0085660:intron 50.0%
!!! ATTTTGGTTGCGAGGCGGAA+GGG - chr1_2:65899182-65899201 None:intergenic 50.0%
!!! TATTTTGGTTGCGAGGCGGA+AGG - chr1_2:65899183-65899202 None:intergenic 50.0%
ATACTCTTGCGAAGACCGTC+AGG + chr1_2:65899381-65899400 Msa0085660:intron 50.0%
GCATTTCACCCCACTTATGC+TGG + chr1_2:65899444-65899463 Msa0085660:intron 50.0%
TATCCCACAAGGCCAGAAGT+CGG - chr1_2:65899622-65899641 None:intergenic 50.0%
! AGATAACTTGTGACAGCGGG+AGG - chr1_2:65899751-65899770 None:intergenic 50.0%
GATTTGGAGGGTAGGAAAGG+TGG + chr1_2:65899906-65899925 Msa0085660:intron 50.0%
GGCCATAGCCTTTGAATTGG+TGG - chr1_2:65900038-65900057 None:intergenic 50.0%
AGGCTATGGCCTATGGTACA+AGG + chr1_2:65900047-65900066 Msa0085660:intron 50.0%
! GATTTTCCATTCCTCTGGCC+TGG - chr1_2:65900074-65900093 None:intergenic 50.0%
GTGCAGGCATAAGAAGCAGA+AGG + chr1_2:65900167-65900186 Msa0085660:intron 50.0%
CAGGCATAAGAAGCAGAAGG+AGG + chr1_2:65900170-65900189 Msa0085660:intron 50.0%
GCATAAGAAGCAGAAGGAGG+AGG + chr1_2:65900173-65900192 Msa0085660:CDS 50.0%
TGCCACAAGGGCAAAATCCA+GGG - chr1_2:65900293-65900312 None:intergenic 50.0%
ATGCCACAAGGGCAAAATCC+AGG - chr1_2:65900294-65900313 None:intergenic 50.0%
TCGCACTATAACCATCCTGC+AGG + chr1_2:65900375-65900394 Msa0085660:intron 50.0%
ACAAGTGCCTTCAGAGACAC+AGG - chr1_2:65900452-65900471 None:intergenic 50.0%
TTAAAACTGAAGGCCGAGGG+TGG + chr1_2:65901000-65901019 Msa0085660:CDS 50.0%
TAAAACTGAAGGCCGAGGGT+GGG + chr1_2:65901001-65901020 Msa0085660:CDS 50.0%
CATTATGGGGTCTTGGAGTG+GGG - chr1_2:65902343-65902362 None:intergenic 50.0%
CAAGCACAAGTTTCCGTGCT+AGG - chr1_2:65902373-65902392 None:intergenic 50.0%
CGCATTCGAAGTAACACTGC+AGG + chr1_2:65902893-65902912 Msa0085660:CDS 50.0%
! AGCATCAAAGGAAGCACAGG+AGG + chr1_2:65903009-65903028 Msa0085660:CDS 50.0%
CTACGACAGTAGCAGAGAAG+TGG + chr1_2:65903582-65903601 Msa0085660:CDS 50.0%
GGCTTCCTGCCTAAAACTCA+AGG + chr1_2:65903610-65903629 Msa0085660:CDS 50.0%
! TCAGTACCTTTTGCTTGGCC+GGG - chr1_2:65903695-65903714 None:intergenic 50.0%
! TTGTTGGTGGGCCGAAAGCA+AGG + chr1_2:65898558-65898577 Msa0085660:intron 55.0%
! TGTTGGTGGGCCGAAAGCAA+GGG + chr1_2:65898559-65898578 Msa0085660:intron 55.0%
GCCGAAAGCAAGGGATTCAG+TGG + chr1_2:65898568-65898587 Msa0085660:intron 55.0%
! CTGTCTCTGTTGCTGCTTCC+CGG + chr1_2:65898670-65898689 Msa0085660:intron 55.0%
GCCGGTCAGATAGAGAAGTC+AGG - chr1_2:65898748-65898767 None:intergenic 55.0%
GTGGTCGCCCAGTATGACAT+AGG - chr1_2:65898962-65898981 None:intergenic 55.0%
!! TCATCCGACTTCTGGCCTTG+TGG + chr1_2:65899615-65899634 Msa0085660:intron 55.0%
!! CATCCGACTTCTGGCCTTGT+GGG + chr1_2:65899616-65899635 Msa0085660:intron 55.0%
AGGGTAGGAAAGGTGGAGTG+TGG + chr1_2:65899913-65899932 Msa0085660:intron 55.0%
TGGCCTATGGTACAAGGACC+AGG + chr1_2:65900053-65900072 Msa0085660:intron 55.0%
TGGCCTGGTCCTTGTACCAT+AGG - chr1_2:65900059-65900078 None:intergenic 55.0%
GATGATCCTGACAGTGCCTG+TGG + chr1_2:65900228-65900247 Msa0085660:CDS 55.0%
CTGACAGTGCCTGTGGAGAT+GGG + chr1_2:65900235-65900254 Msa0085660:CDS 55.0%
! ACCCCTGGATTTTGCCCTTG+TGG + chr1_2:65900288-65900307 Msa0085660:CDS 55.0%
GCCACAAGGGCAAAATCCAG+GGG - chr1_2:65900292-65900311 None:intergenic 55.0%
AAAACTGAAGGCCGAGGGTG+GGG + chr1_2:65901002-65901021 Msa0085660:CDS 55.0%
!! GTGGGGTCTTTTGGCTGATG+AGG + chr1_2:65901019-65901038 Msa0085660:CDS 55.0%
AACCTTGGGCGGTGGGAAAT+AGG - chr1_2:65901501-65901520 None:intergenic 55.0%
GATGTCAAACCTTGGGCGGT+GGG - chr1_2:65901508-65901527 None:intergenic 55.0%
TGATGTCAAACCTTGGGCGG+TGG - chr1_2:65901509-65901528 None:intergenic 55.0%
!!! CTCCGCCTTGAGTTTTAGGC+AGG - chr1_2:65903618-65903637 None:intergenic 55.0%
!! TGTACTCCTCAAAGGGCACC+CGG + chr1_2:65903674-65903693 Msa0085660:CDS 55.0%
! CAGTGGTCTTACCCTTGGGC+CGG + chr1_2:65898585-65898604 Msa0085660:intron 60.0%
TGGTACAAGGACCAGGCCAG+AGG + chr1_2:65900060-65900079 Msa0085660:intron 60.0%
CAAGGACCAGGCCAGAGGAA+TGG + chr1_2:65900065-65900084 Msa0085660:intron 60.0%
! CCATCTCCACAGGCACTGTC+AGG - chr1_2:65900237-65900256 None:intergenic 60.0%
CCTGACAGTGCCTGTGGAGA+TGG + chr1_2:65900234-65900253 Msa0085660:CDS 60.0%
! ACCAGCACTGAATGCACCCC+TGG + chr1_2:65900273-65900292 Msa0085660:CDS 60.0%
! TCCAGGGGTGCATTCAGTGC+TGG - chr1_2:65900277-65900296 None:intergenic 60.0%
CAGCCAAAAGACCCCACCCT+CGG - chr1_2:65901016-65901035 None:intergenic 60.0%
CTTGGGCGGTGGGAAATAGG+AGG - chr1_2:65901498-65901517 None:intergenic 60.0%
CTCCTATTTCCCACCGCCCA+AGG + chr1_2:65901496-65901515 Msa0085660:intron 60.0%
ATGGGGTCTTGGAGTGGGGA+AGG - chr1_2:65902339-65902358 None:intergenic 60.0%
ACCTACAAGGGCCGGCCCAA+GGG - chr1_2:65898599-65898618 None:intergenic 65.0%
AACCTACAAGGGCCGGCCCA+AGG - chr1_2:65898600-65898619 None:intergenic 65.0%
! AGGCCGAGGGTGGGGTCTTT+TGG + chr1_2:65901010-65901029 Msa0085660:CDS 65.0%
! AGGGCACCCGGCCAAGCAAA+AGG + chr1_2:65903686-65903705 Msa0085660:CDS 65.0%
ACCCTTGGGCCGGCCCTTGT+AGG + chr1_2:65898595-65898614 Msa0085660:intron 70.0%
GCTTGGCCGGGTGCCCTTTG+AGG - chr1_2:65903683-65903702 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 65897702 65904033 65897702 ID=Msa0085660;Name=Msa0085660
chr1_2 mRNA 65897702 65904033 65897702 ID=Msa0085660-mRNA-1;Parent=Msa0085660;Name=Msa0085660-mRNA-1;_AED=0.16;_eAED=0.16;_QI=262|1|1|1|1|1|10|261|483
chr1_2 exon 65897702 65897981 65897702 ID=Msa0085660-mRNA-1:exon:22276;Parent=Msa0085660-mRNA-1
chr1_2 exon 65898078 65898145 65898078 ID=Msa0085660-mRNA-1:exon:22277;Parent=Msa0085660-mRNA-1
chr1_2 exon 65900173 65900329 65900173 ID=Msa0085660-mRNA-1:exon:22278;Parent=Msa0085660-mRNA-1
chr1_2 exon 65900963 65901049 65900963 ID=Msa0085660-mRNA-1:exon:22279;Parent=Msa0085660-mRNA-1
chr1_2 exon 65901153 65901237 65901153 ID=Msa0085660-mRNA-1:exon:22280;Parent=Msa0085660-mRNA-1
chr1_2 exon 65901320 65901413 65901320 ID=Msa0085660-mRNA-1:exon:22281;Parent=Msa0085660-mRNA-1
chr1_2 exon 65901552 65901750 65901552 ID=Msa0085660-mRNA-1:exon:22282;Parent=Msa0085660-mRNA-1
chr1_2 exon 65902205 65902239 65902205 ID=Msa0085660-mRNA-1:exon:22283;Parent=Msa0085660-mRNA-1
chr1_2 exon 65902628 65903048 65902628 ID=Msa0085660-mRNA-1:exon:22284;Parent=Msa0085660-mRNA-1
chr1_2 exon 65903485 65904033 65903485 ID=Msa0085660-mRNA-1:exon:22285;Parent=Msa0085660-mRNA-1
chr1_2 five_prime_UTR 65897702 65897963 65897702 ID=Msa0085660-mRNA-1:five_prime_utr;Parent=Msa0085660-mRNA-1
chr1_2 CDS 65897964 65897981 65897964 ID=Msa0085660-mRNA-1:cds;Parent=Msa0085660-mRNA-1
chr1_2 CDS 65898078 65898145 65898078 ID=Msa0085660-mRNA-1:cds;Parent=Msa0085660-mRNA-1
chr1_2 CDS 65900173 65900329 65900173 ID=Msa0085660-mRNA-1:cds;Parent=Msa0085660-mRNA-1
chr1_2 CDS 65900963 65901049 65900963 ID=Msa0085660-mRNA-1:cds;Parent=Msa0085660-mRNA-1
chr1_2 CDS 65901153 65901237 65901153 ID=Msa0085660-mRNA-1:cds;Parent=Msa0085660-mRNA-1
chr1_2 CDS 65901320 65901413 65901320 ID=Msa0085660-mRNA-1:cds;Parent=Msa0085660-mRNA-1
chr1_2 CDS 65901552 65901750 65901552 ID=Msa0085660-mRNA-1:cds;Parent=Msa0085660-mRNA-1
chr1_2 CDS 65902205 65902239 65902205 ID=Msa0085660-mRNA-1:cds;Parent=Msa0085660-mRNA-1
chr1_2 CDS 65902628 65903048 65902628 ID=Msa0085660-mRNA-1:cds;Parent=Msa0085660-mRNA-1
chr1_2 CDS 65903485 65903772 65903485 ID=Msa0085660-mRNA-1:cds;Parent=Msa0085660-mRNA-1
chr1_2 three_prime_UTR 65903773 65904033 65903773 ID=Msa0085660-mRNA-1:three_prime_utr;Parent=Msa0085660-mRNA-1
Gene Sequence

>Msa0085660

ATGTTATTCATTCATATGGATCCTCATGCTGCTGAAGATTTGCCTCAATACATTCATATCAATCAAAATGATTTTTTTATGCGAAGGCATAAGAAGCAGAAGGAGGAGGATATTGCTATATGTGAATGCAGGTATGATGAAGATGATCCTGACAGTGCCTGTGGAGATGGGTGTCTAAATGTATTAACCAGCACTGAATGCACCCCTGGATTTTGCCCTTGTGGCATCCTTTGTAAAAATCAGAAATTTCAGAAGTGTGAATATGCAAAAACCAAGTTATTTAAAACTGAAGGCCGAGGGTGGGGTCTTTTGGCTGATGAGGAAATTAAGGCAGGACAGTTTGTCATTGAATACTGTGGAGAAGTAATATCATGCAAAGAAGCCAAGCGCAGATCCCATACTTATGAAACTCAAGGTCTTAAGGATGCATTTATCATTTCTCTTAATGCGTCTGAATCTATTGATGCAACTAGAAAAGGAAGCCTTGCAAGATTTATAAACCATTCCTGTCAACCAAACTGTGAGACAAGAAAATGGAATGTCATGGGGGAAATAAGAGTTGGAATATTTGCACTGGAAGATATTCCTATTGGAACTGAACTGGCATATGACTATAATTTTGAATGGTTTGGAGGTGCAAAGGTTCGCTGCCTCTGTGGTGCGCTCAAATGTTCTGAATTCCTTGGAGCAAAATCTCGTGGTTTTCAAGAGGATACTTATCTATGGGAAGATGATGATGACAGATACTCAATTGAGAAAATTCCTTTATATGACTCTGCGGAGGATGAACTCACGTCAAATGTTGGTGGACAGAGTGAACAATCCATGGCTATTATACTGAAAGCTGAAGAACCATCGGAGTCCACTGTTTTAAATATTCAACCACTGAATTCAATTGGGATCAATGGCTTAGGTATTCAGAAAATGAAAACTGAAATAGAAAGCGAGGACATGAGGTTGTACTCCCAAGATACCAAACAGGATCTTCCCCAAAAAAATGCGATATCGCGCATTCGAAGTAACACTGCAGGAGGAAAGTCCGTCTCTACCAAAAGATCAAAGGGGGGAAAGCTTAAAAATCGCATACAGAAGAAAATTGATGCAAAGTATGCAGCTGGCCTTTTAGCATCAAAGGAAGCACAGGAGGAGATTTTAGATTATGAGAAAAGAAAAGATGACGCTACGGAAGCCCTTGATTCTTTATACAATGAAATACGGCCTGCCATTGAAGAACACGAGAAGGATACCCAAGACAGTGTATCTACGACAGTAGCAGAGAAGTGGATACAGGCTTCCTGCCTAAAACTCAAGGCGGAGTTTGATCTTTACTCGTCAATTATTAAAAATGTTGCTTGTACTCCTCAAAGGGCACCCGGCCAAGCAAAAGGTACTGAAGTCGATAACGAAGACAAAATGAAGCTTTTGACGTTCTCGGCCTCATCTAATCCGTAA
Protein sequence

>Msa0085660

MLFIHMDPHAAEDLPQYIHINQNDFFMRRHKKQKEEDIAICECRYDEDDPDSACGDGCLNVLTSTECTPGFCPCGILCKNQKFQKCEYAKTKLFKTEGRGWGLLADEEIKAGQFVIEYCGEVISCKEAKRRSHTYETQGLKDAFIISLNASESIDATRKGSLARFINHSCQPNCETRKWNVMGEIRVGIFALEDIPIGTELAYDYNFEWFGGAKVRCLCGALKCSEFLGAKSRGFQEDTYLWEDDDDRYSIEKIPLYDSAEDELTSNVGGQSEQSMAIILKAEEPSESTVLNIQPLNSIGINGLGIQKMKTEIESEDMRLYSQDTKQDLPQKNAISRIRSNTAGGKSVSTKRSKGGKLKNRIQKKIDAKYAAGLLASKEAQEEILDYEKRKDDATEALDSLYNEIRPAIEEHEKDTQDSVSTTVAEKWIQASCLKLKAEFDLYSSIIKNVACTPQRAPGQAKGTEVDNEDKMKLLTFSASSNP*