Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0087950 | sp|F4JIF5|TCX2_ARATH | 70.588 | 51 | 15 | 0 | 196 | 246 | 368 | 418 | 3.20e-16 | 81.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0087950 | A0A396JXF7 | 74.809 | 262 | 22 | 3 | 1 | 255 | 1 | 225 | 8.58e-130 | 375 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0087950 | TF | CPP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0087950 | MtrunA17_Chr1g0205001 | 74.809 | 262 | 22 | 3 | 1 | 255 | 1 | 225 | 1.65e-133 | 375 |
| Msa0087950 | MtrunA17_Chr1g0205031 | 38.434 | 281 | 111 | 12 | 21 | 250 | 183 | 452 | 8.62e-34 | 128 |
| Msa0087950 | MtrunA17_Chr1g0205031 | 75.610 | 41 | 10 | 0 | 62 | 102 | 16 | 56 | 5.30e-12 | 65.5 |
| Msa0087950 | MtrunA17_Chr5g0394661 | 33.829 | 269 | 143 | 6 | 16 | 250 | 268 | 535 | 1.94e-25 | 104 |
| Msa0087950 | MtrunA17_Chr1g0205021 | 85.714 | 42 | 6 | 0 | 62 | 103 | 2 | 43 | 8.64e-18 | 80.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0087950 | AT4G14770.1 | 70.588 | 51 | 15 | 0 | 196 | 246 | 368 | 418 | 3.25e-17 | 81.3 |
| Msa0087950 | AT3G22780.1 | 62.500 | 56 | 21 | 0 | 191 | 246 | 389 | 444 | 3.25e-17 | 81.3 |
| Msa0087950 | AT4G14770.3 | 70.588 | 51 | 15 | 0 | 196 | 246 | 349 | 399 | 4.03e-17 | 80.9 |
| Msa0087950 | AT4G14770.2 | 70.588 | 51 | 15 | 0 | 196 | 246 | 348 | 398 | 4.11e-17 | 80.9 |
| Msa0087950 | AT3G22760.1 | 54.286 | 70 | 31 | 1 | 178 | 246 | 302 | 371 | 3.20e-16 | 78.2 |
| Msa0087950 | AT3G22760.2 | 54.286 | 70 | 31 | 1 | 178 | 246 | 179 | 248 | 4.21e-16 | 77.8 |
| Msa0087950 | AT3G04850.1 | 56.863 | 51 | 22 | 0 | 198 | 248 | 448 | 498 | 1.53e-14 | 73.2 |
Find 59 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTTCCAATGTTGCTTTA+AGG | 0.100593 | 1_2:-68978431 | Msa0087950:CDS |
| AGAACTGAATCTTCATTAAT+AGG | 0.233906 | 1_2:+68977180 | None:intergenic |
| GAAAATGAAATAACTTCTTC+TGG | 0.278205 | 1_2:-68977666 | Msa0087950:CDS |
| TTTATGCAGGGTGTTGCTTC+TGG | 0.285126 | 1_2:-68978525 | Msa0087950:intron |
| TCTTTCCAATGTTGCTTTAA+GGG | 0.298245 | 1_2:-68978430 | Msa0087950:CDS |
| AGTCATCAGTTCACATTTGC+AGG | 0.331137 | 1_2:-68977500 | Msa0087950:CDS |
| TTCATCTCCCCGACTTTGAT+TGG | 0.332401 | 1_2:+68978404 | None:intergenic |
| ATATCAATGGAAAGACATTT+CGG | 0.338656 | 1_2:-68977564 | Msa0087950:CDS |
| AAATGTCTTTCCATTGATAT+AGG | 0.344746 | 1_2:+68977567 | None:intergenic |
| ACCTCTTCTGAGTTGGAAAC+GGG | 0.345406 | 1_2:+68978806 | None:intergenic |
| GCAGCGTAGTTCGGCAGTTC+CGG | 0.354586 | 1_2:+68977636 | None:intergenic |
| TGTTGTGAGTGCTTTGCCTC+TGG | 0.362989 | 1_2:-68977249 | Msa0087950:CDS |
| TTCAAGTCAAAATCATTTCC+TGG | 0.365385 | 1_2:+68977708 | None:intergenic |
| ACAATGTCTGTTGCAGCTAT+TGG | 0.366380 | 1_2:+68978468 | None:intergenic |
| TATCAATGGAAAGACATTTC+GGG | 0.388932 | 1_2:-68977563 | Msa0087950:CDS |
| AGTAACCCTCTGTGCATTCA+AGG | 0.425435 | 1_2:+68977734 | None:intergenic |
| AACTTCTTCTGGAAGGCAAC+CGG | 0.429598 | 1_2:-68977655 | Msa0087950:CDS |
| AACCTCTTCTGAGTTGGAAA+CGG | 0.439073 | 1_2:+68978805 | None:intergenic |
| TGCAAAGAAGCAGCGTAGTT+CGG | 0.446648 | 1_2:+68977627 | None:intergenic |
| CCTGCGGTAGTTGATGCCCT+TGG | 0.457882 | 1_2:+68977592 | None:intergenic |
| GCACAGAGGGTTACTTTGCC+AGG | 0.458714 | 1_2:-68977726 | Msa0087950:CDS |
| TCAGATCTCAGTGGGGAAGA+AGG | 0.471082 | 1_2:-68977471 | Msa0087950:CDS |
| AAGGGATACCAATCAAAGTC+GGG | 0.476339 | 1_2:-68978412 | Msa0087950:CDS |
| GACTTGAATGTACCTTATGA+TGG | 0.488631 | 1_2:-68977693 | Msa0087950:CDS |
| CAAGCAAACCTCTTCTGAGT+TGG | 0.490749 | 1_2:+68978799 | None:intergenic |
| ACCGCAGGCGCCTATATCAA+TGG | 0.498707 | 1_2:-68977577 | Msa0087950:CDS |
| GCCTCTGGAGTCTACTGTAC+AGG | 0.504855 | 1_2:-68977234 | Msa0087950:CDS |
| ACCCTCTGTGCATTCAAGGC+TGG | 0.506725 | 1_2:+68977738 | None:intergenic |
| CCCCGTTTCCAACTCAGAAG+AGG | 0.510561 | 1_2:-68978807 | Msa0087950:intron |
| ACTATGACGTTGAACTCTCT+TGG | 0.518186 | 1_2:-68977789 | Msa0087950:CDS |
| TCTGGTTCAACACATGGAAT+CGG | 0.518404 | 1_2:-68978507 | Msa0087950:CDS |
| GACGTTGAACTCTCTTGGCA+TGG | 0.527040 | 1_2:-68977784 | Msa0087950:CDS |
| TGCATATTTATGAGAGCCAA+GGG | 0.529038 | 1_2:-68977608 | Msa0087950:CDS |
| GGTATCCCTTAAAGCAACAT+TGG | 0.529271 | 1_2:+68978425 | None:intergenic |
| ATGAAATAACTTCTTCTGGA+AGG | 0.540167 | 1_2:-68977662 | Msa0087950:CDS |
| CAGATCTCAGTGGGGAAGAA+GGG | 0.542549 | 1_2:-68977470 | Msa0087950:CDS |
| GTTGCTTCTGGTTCAACACA+TGG | 0.546284 | 1_2:-68978513 | Msa0087950:CDS |
| TTGCATATTTATGAGAGCCA+AGG | 0.548183 | 1_2:-68977609 | Msa0087950:CDS |
| GAAGATTCAGTTCTGAAAGC+TGG | 0.550155 | 1_2:-68977171 | Msa0087950:CDS |
| GGCATGAGTCAGATCTCAGT+GGG | 0.552591 | 1_2:-68977479 | Msa0087950:CDS |
| CCAAGGGCATCAACTACCGC+AGG | 0.553947 | 1_2:-68977592 | Msa0087950:CDS |
| TTAAAGGAGATAGATTATTG+AGG | 0.554008 | 1_2:+68977841 | None:intergenic |
| ATTCAGTTCTGAAAGCTGGC+AGG | 0.556614 | 1_2:-68977167 | Msa0087950:CDS |
| GTCTTAACTTCAATCTCAGA+TGG | 0.583629 | 1_2:+68977540 | None:intergenic |
| TAAGGGATACCAATCAAAGT+CGG | 0.584467 | 1_2:-68978413 | Msa0087950:CDS |
| CTCTGTGCATTCAAGGCTGG+AGG | 0.591124 | 1_2:+68977741 | None:intergenic |
| TCAAAGTCGGGGAGATGAAG+AGG | 0.591608 | 1_2:-68978400 | Msa0087950:intron |
| CTCTTCTGAGTTGGAAACGG+GGG | 0.604916 | 1_2:+68978808 | None:intergenic |
| TCCAGCCTTGAATGCACAGA+GGG | 0.605064 | 1_2:-68977739 | Msa0087950:CDS |
| TCCATTGATATAGGCGCCTG+CGG | 0.613315 | 1_2:+68977576 | None:intergenic |
| AACAGACATTGTTCAAACAC+AGG | 0.615137 | 1_2:-68978457 | Msa0087950:CDS |
| CCTCTTCTGAGTTGGAAACG+GGG | 0.629054 | 1_2:+68978807 | None:intergenic |
| GCTGGAGGTGAATTAACAAG+AGG | 0.639674 | 1_2:+68977756 | None:intergenic |
| ACAGACATTGTTCAAACACA+GGG | 0.651363 | 1_2:-68978456 | Msa0087950:CDS |
| AGGGATACCAATCAAAGTCG+GGG | 0.668568 | 1_2:-68978411 | Msa0087950:CDS |
| TCCTGTACAGTAGACTCCAG+AGG | 0.695681 | 1_2:+68977233 | None:intergenic |
| AGGCATGAGTCAGATCTCAG+TGG | 0.717314 | 1_2:-68977480 | Msa0087950:CDS |
| CTCCAGCCTTGAATGCACAG+AGG | 0.760069 | 1_2:-68977740 | Msa0087950:CDS |
| GCATGAGTCAGATCTCAGTG+GGG | 0.811275 | 1_2:-68977478 | Msa0087950:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAATATATGATTAATTAT+AGG | - | chr1_2:68977404-68977423 | Msa0087950:intron | 10.0% |
| !!! | TATTTTCATATTTTTATACT+TGG | - | chr1_2:68977433-68977452 | Msa0087950:CDS | 10.0% |
| !! | AACAATATATGATTAATTAT+AGG | - | chr1_2:68977404-68977423 | Msa0087950:intron | 10.0% |
| !!! | TATTTTCATATTTTTATACT+TGG | - | chr1_2:68977433-68977452 | Msa0087950:CDS | 10.0% |
| !!! | AATTTACAACATAAATTTTG+TGG | - | chr1_2:68978009-68978028 | Msa0087950:intron | 15.0% |
| !!! | AATTTACAACATAAATTTTG+TGG | - | chr1_2:68978009-68978028 | Msa0087950:intron | 15.0% |
| !! | ATACGTATGAAATTGTAAAA+AGG | + | chr1_2:68977282-68977301 | None:intergenic | 20.0% |
| !! | CAAAAAAAAAAAAATCGAGT+GGG | + | chr1_2:68978035-68978054 | None:intergenic | 20.0% |
| !!! | ATGTAAGCTTGAAAAAATTT+TGG | - | chr1_2:68978649-68978668 | Msa0087950:intron | 20.0% |
| !!! | TGTAAGCTTGAAAAAATTTT+GGG | - | chr1_2:68978650-68978669 | Msa0087950:intron | 20.0% |
| !! | ATACGTATGAAATTGTAAAA+AGG | + | chr1_2:68977282-68977301 | None:intergenic | 20.0% |
| !! | CAAAAAAAAAAAAATCGAGT+GGG | + | chr1_2:68978035-68978054 | None:intergenic | 20.0% |
| !!! | ATGTAAGCTTGAAAAAATTT+TGG | - | chr1_2:68978649-68978668 | Msa0087950:intron | 20.0% |
| !!! | TGTAAGCTTGAAAAAATTTT+GGG | - | chr1_2:68978650-68978669 | Msa0087950:intron | 20.0% |
| ! | AAATAGACAATGGACAAAAA+GGG | + | chr1_2:68977236-68977255 | None:intergenic | 25.0% |
| !!! | AATGGATTAAGCATTCATAA+TGG | + | chr1_2:68977749-68977768 | None:intergenic | 25.0% |
| ! | AGTTACTGTTAGTAATTGTT+TGG | - | chr1_2:68977872-68977891 | Msa0087950:intron | 25.0% |
| ! | CCAAAAAAAAAAAAATCGAG+TGG | + | chr1_2:68978036-68978055 | None:intergenic | 25.0% |
| !!! | CCACTCGATTTTTTTTTTTT+TGG | - | chr1_2:68978033-68978052 | Msa0087950:intron | 25.0% |
| ! | TAAATGCAACAAGAATACTA+TGG | + | chr1_2:68978074-68978093 | None:intergenic | 25.0% |
| !!! | TTTTCCTCATATTTTTATGC+AGG | - | chr1_2:68978099-68978118 | Msa0087950:intron | 25.0% |
| ! | TTAAAGGAGATAGATTATTG+AGG | + | chr1_2:68978144-68978163 | None:intergenic | 25.0% |
| !!! | TCATACTTTTTGCTCTTTAA+AGG | + | chr1_2:68978160-68978179 | None:intergenic | 25.0% |
| !! | TTAAAGAGCAAAAAGTATGA+TGG | - | chr1_2:68978160-68978179 | Msa0087950:intron | 25.0% |
| ! | GAAAATGAAATAACTTCTTC+TGG | - | chr1_2:68978316-68978335 | Msa0087950:intron | 25.0% |
| ! | AAATGTCTTTCCATTGATAT+AGG | + | chr1_2:68978418-68978437 | None:intergenic | 25.0% |
| ! | ATATCAATGGAAAGACATTT+CGG | - | chr1_2:68978418-68978437 | Msa0087950:CDS | 25.0% |
| ! | TGCAAAAGAGTAAAAAAAGA+AGG | + | chr1_2:68978696-68978715 | None:intergenic | 25.0% |
| ! | AGAACTGAATCTTCATTAAT+AGG | + | chr1_2:68978805-68978824 | None:intergenic | 25.0% |
| ! | AAATAGACAATGGACAAAAA+GGG | + | chr1_2:68977236-68977255 | None:intergenic | 25.0% |
| !!! | AATGGATTAAGCATTCATAA+TGG | + | chr1_2:68977749-68977768 | None:intergenic | 25.0% |
| ! | AGTTACTGTTAGTAATTGTT+TGG | - | chr1_2:68977872-68977891 | Msa0087950:intron | 25.0% |
| ! | CCAAAAAAAAAAAAATCGAG+TGG | + | chr1_2:68978036-68978055 | None:intergenic | 25.0% |
| !!! | CCACTCGATTTTTTTTTTTT+TGG | - | chr1_2:68978033-68978052 | Msa0087950:intron | 25.0% |
| ! | TAAATGCAACAAGAATACTA+TGG | + | chr1_2:68978074-68978093 | None:intergenic | 25.0% |
| !!! | TTTTCCTCATATTTTTATGC+AGG | - | chr1_2:68978099-68978118 | Msa0087950:intron | 25.0% |
| ! | TTAAAGGAGATAGATTATTG+AGG | + | chr1_2:68978144-68978163 | None:intergenic | 25.0% |
| !!! | TCATACTTTTTGCTCTTTAA+AGG | + | chr1_2:68978160-68978179 | None:intergenic | 25.0% |
| !! | TTAAAGAGCAAAAAGTATGA+TGG | - | chr1_2:68978160-68978179 | Msa0087950:intron | 25.0% |
| ! | GAAAATGAAATAACTTCTTC+TGG | - | chr1_2:68978316-68978335 | Msa0087950:intron | 25.0% |
| ! | AAATGTCTTTCCATTGATAT+AGG | + | chr1_2:68978418-68978437 | None:intergenic | 25.0% |
| ! | ATATCAATGGAAAGACATTT+CGG | - | chr1_2:68978418-68978437 | Msa0087950:CDS | 25.0% |
| ! | TGCAAAAGAGTAAAAAAAGA+AGG | + | chr1_2:68978696-68978715 | None:intergenic | 25.0% |
| ! | AGAACTGAATCTTCATTAAT+AGG | + | chr1_2:68978805-68978824 | None:intergenic | 25.0% |
| ACAAAAAGGGAAAATGGAAA+TGG | + | chr1_2:68977223-68977242 | None:intergenic | 30.0% | |
| CAAATAGACAATGGACAAAA+AGG | + | chr1_2:68977237-68977256 | None:intergenic | 30.0% | |
| AAAGTGATGCAAATAGACAA+TGG | + | chr1_2:68977246-68977265 | None:intergenic | 30.0% | |
| !! | CAATTTCATACGTATTGACT+TGG | - | chr1_2:68977287-68977306 | Msa0087950:intron | 30.0% |
| ATTCAAGAAACCATTTCAGT+TGG | + | chr1_2:68977336-68977355 | None:intergenic | 30.0% | |
| ATTAATCATATCTCAGACCA+TGG | + | chr1_2:68977364-68977383 | None:intergenic | 30.0% | |
| TGAGATATGATTAATCTCCA+TGG | - | chr1_2:68977369-68977388 | Msa0087950:intron | 30.0% | |
| TTGTTGCAATAAGAAAACCA+TGG | + | chr1_2:68977389-68977408 | None:intergenic | 30.0% | |
| !!! | TTTTATACTTGGCTTTATGC+AGG | - | chr1_2:68977444-68977463 | Msa0087950:CDS | 30.0% |
| !! | TTTATACTTGGCTTTATGCA+GGG | - | chr1_2:68977445-68977464 | Msa0087950:CDS | 30.0% |
| !! | ATCTTTCCAATGTTGCTTTA+AGG | - | chr1_2:68977551-68977570 | Msa0087950:CDS | 30.0% |
| !! | TCTTTCCAATGTTGCTTTAA+GGG | - | chr1_2:68977552-68977571 | Msa0087950:CDS | 30.0% |
| AATGGACAAAAACAAAACAG+AGG | + | chr1_2:68977731-68977750 | None:intergenic | 30.0% | |
| ! | TCAACATATGCATTTGAAAC+AGG | + | chr1_2:68977785-68977804 | None:intergenic | 30.0% |
| TTCAAATGCATATGTTGATG+TGG | - | chr1_2:68977787-68977806 | Msa0087950:CDS | 30.0% | |
| TCATCCTGCATAAAAATATG+AGG | + | chr1_2:68978106-68978125 | None:intergenic | 30.0% | |
| TTCAAGTCAAAATCATTTCC+TGG | + | chr1_2:68978277-68978296 | None:intergenic | 30.0% | |
| ! | TCATTTTCTATGCCATCATA+AGG | + | chr1_2:68978304-68978323 | None:intergenic | 30.0% |
| ATGAAATAACTTCTTCTGGA+AGG | - | chr1_2:68978320-68978339 | Msa0087950:intron | 30.0% | |
| TATCAATGGAAAGACATTTC+GGG | - | chr1_2:68978419-68978438 | Msa0087950:CDS | 30.0% | |
| ACAAAAAGGGAAAATGGAAA+TGG | + | chr1_2:68977223-68977242 | None:intergenic | 30.0% | |
| CAAATAGACAATGGACAAAA+AGG | + | chr1_2:68977237-68977256 | None:intergenic | 30.0% | |
| AAAGTGATGCAAATAGACAA+TGG | + | chr1_2:68977246-68977265 | None:intergenic | 30.0% | |
| !! | CAATTTCATACGTATTGACT+TGG | - | chr1_2:68977287-68977306 | Msa0087950:intron | 30.0% |
| ATTCAAGAAACCATTTCAGT+TGG | + | chr1_2:68977336-68977355 | None:intergenic | 30.0% | |
| ATTAATCATATCTCAGACCA+TGG | + | chr1_2:68977364-68977383 | None:intergenic | 30.0% | |
| TGAGATATGATTAATCTCCA+TGG | - | chr1_2:68977369-68977388 | Msa0087950:intron | 30.0% | |
| TTGTTGCAATAAGAAAACCA+TGG | + | chr1_2:68977389-68977408 | None:intergenic | 30.0% | |
| !!! | TTTTATACTTGGCTTTATGC+AGG | - | chr1_2:68977444-68977463 | Msa0087950:CDS | 30.0% |
| !! | TTTATACTTGGCTTTATGCA+GGG | - | chr1_2:68977445-68977464 | Msa0087950:CDS | 30.0% |
| !! | ATCTTTCCAATGTTGCTTTA+AGG | - | chr1_2:68977551-68977570 | Msa0087950:CDS | 30.0% |
| !! | TCTTTCCAATGTTGCTTTAA+GGG | - | chr1_2:68977552-68977571 | Msa0087950:CDS | 30.0% |
| AATGGACAAAAACAAAACAG+AGG | + | chr1_2:68977731-68977750 | None:intergenic | 30.0% | |
| ! | TCAACATATGCATTTGAAAC+AGG | + | chr1_2:68977785-68977804 | None:intergenic | 30.0% |
| TTCAAATGCATATGTTGATG+TGG | - | chr1_2:68977787-68977806 | Msa0087950:CDS | 30.0% | |
| TCATCCTGCATAAAAATATG+AGG | + | chr1_2:68978106-68978125 | None:intergenic | 30.0% | |
| TTCAAGTCAAAATCATTTCC+TGG | + | chr1_2:68978277-68978296 | None:intergenic | 30.0% | |
| ! | TCATTTTCTATGCCATCATA+AGG | + | chr1_2:68978304-68978323 | None:intergenic | 30.0% |
| ATGAAATAACTTCTTCTGGA+AGG | - | chr1_2:68978320-68978339 | Msa0087950:intron | 30.0% | |
| TATCAATGGAAAGACATTTC+GGG | - | chr1_2:68978419-68978438 | Msa0087950:CDS | 30.0% | |
| CAATGGACAAAAAGGGAAAA+TGG | + | chr1_2:68977229-68977248 | None:intergenic | 35.0% | |
| TTGCATTAAGCCAACTGAAA+TGG | - | chr1_2:68977323-68977342 | Msa0087950:intron | 35.0% | |
| ! | GGTTTCTTGAATTTTCTCCA+TGG | - | chr1_2:68977344-68977363 | Msa0087950:intron | 35.0% |
| AACAGACATTGTTCAAACAC+AGG | - | chr1_2:68977525-68977544 | Msa0087950:CDS | 35.0% | |
| ACAGACATTGTTCAAACACA+GGG | - | chr1_2:68977526-68977545 | Msa0087950:CDS | 35.0% | |
| TAAGGGATACCAATCAAAGT+CGG | - | chr1_2:68977569-68977588 | Msa0087950:CDS | 35.0% | |
| ! | AGCAAAAAGTATGATGGAGT+TGG | - | chr1_2:68978166-68978185 | Msa0087950:intron | 35.0% |
| GACTTGAATGTACCTTATGA+TGG | - | chr1_2:68978289-68978308 | Msa0087950:intron | 35.0% | |
| TTGCATATTTATGAGAGCCA+AGG | - | chr1_2:68978373-68978392 | Msa0087950:intron | 35.0% | |
| TGCATATTTATGAGAGCCAA+GGG | - | chr1_2:68978374-68978393 | Msa0087950:intron | 35.0% | |
| GTCTTAACTTCAATCTCAGA+TGG | + | chr1_2:68978445-68978464 | None:intergenic | 35.0% | |
| CAATGGACAAAAAGGGAAAA+TGG | + | chr1_2:68977229-68977248 | None:intergenic | 35.0% | |
| TTGCATTAAGCCAACTGAAA+TGG | - | chr1_2:68977323-68977342 | Msa0087950:intron | 35.0% | |
| ! | GGTTTCTTGAATTTTCTCCA+TGG | - | chr1_2:68977344-68977363 | Msa0087950:intron | 35.0% |
| AACAGACATTGTTCAAACAC+AGG | - | chr1_2:68977525-68977544 | Msa0087950:CDS | 35.0% | |
| ACAGACATTGTTCAAACACA+GGG | - | chr1_2:68977526-68977545 | Msa0087950:CDS | 35.0% | |
| TAAGGGATACCAATCAAAGT+CGG | - | chr1_2:68977569-68977588 | Msa0087950:CDS | 35.0% | |
| ! | AGCAAAAAGTATGATGGAGT+TGG | - | chr1_2:68978166-68978185 | Msa0087950:intron | 35.0% |
| GACTTGAATGTACCTTATGA+TGG | - | chr1_2:68978289-68978308 | Msa0087950:intron | 35.0% | |
| TTGCATATTTATGAGAGCCA+AGG | - | chr1_2:68978373-68978392 | Msa0087950:intron | 35.0% | |
| TGCATATTTATGAGAGCCAA+GGG | - | chr1_2:68978374-68978393 | Msa0087950:intron | 35.0% | |
| GTCTTAACTTCAATCTCAGA+TGG | + | chr1_2:68978445-68978464 | None:intergenic | 35.0% | |
| ! | AACCTCTTCTGAGTTGGAAA+CGG | + | chr1_2:68977180-68977199 | None:intergenic | 40.0% |
| GAAAATGGAAATGGTGAGAG+TGG | + | chr1_2:68977214-68977233 | None:intergenic | 40.0% | |
| ! | TCTGGTTCAACACATGGAAT+CGG | - | chr1_2:68977475-68977494 | Msa0087950:CDS | 40.0% |
| ACAATGTCTGTTGCAGCTAT+TGG | + | chr1_2:68977517-68977536 | None:intergenic | 40.0% | |
| GGTATCCCTTAAAGCAACAT+TGG | + | chr1_2:68977560-68977579 | None:intergenic | 40.0% | |
| AAGGGATACCAATCAAAGTC+GGG | - | chr1_2:68977570-68977589 | Msa0087950:CDS | 40.0% | |
| ACAGGATGTGAACTTGTGAA+TGG | + | chr1_2:68977767-68977786 | None:intergenic | 40.0% | |
| ACTATGACGTTGAACTCTCT+TGG | - | chr1_2:68978193-68978212 | Msa0087950:intron | 40.0% | |
| AGTCATCAGTTCACATTTGC+AGG | - | chr1_2:68978482-68978501 | Msa0087950:CDS | 40.0% | |
| CACGCTAAGCATAAAACGAA+AGG | + | chr1_2:68978601-68978620 | None:intergenic | 40.0% | |
| !! | GAAGATTCAGTTCTGAAAGC+TGG | - | chr1_2:68978811-68978830 | Msa0087950:CDS | 40.0% |
| ! | AACCTCTTCTGAGTTGGAAA+CGG | + | chr1_2:68977180-68977199 | None:intergenic | 40.0% |
| GAAAATGGAAATGGTGAGAG+TGG | + | chr1_2:68977214-68977233 | None:intergenic | 40.0% | |
| ! | TCTGGTTCAACACATGGAAT+CGG | - | chr1_2:68977475-68977494 | Msa0087950:CDS | 40.0% |
| ACAATGTCTGTTGCAGCTAT+TGG | + | chr1_2:68977517-68977536 | None:intergenic | 40.0% | |
| GGTATCCCTTAAAGCAACAT+TGG | + | chr1_2:68977560-68977579 | None:intergenic | 40.0% | |
| AAGGGATACCAATCAAAGTC+GGG | - | chr1_2:68977570-68977589 | Msa0087950:CDS | 40.0% | |
| ACAGGATGTGAACTTGTGAA+TGG | + | chr1_2:68977767-68977786 | None:intergenic | 40.0% | |
| ACTATGACGTTGAACTCTCT+TGG | - | chr1_2:68978193-68978212 | Msa0087950:intron | 40.0% | |
| AGTCATCAGTTCACATTTGC+AGG | - | chr1_2:68978482-68978501 | Msa0087950:CDS | 40.0% | |
| CACGCTAAGCATAAAACGAA+AGG | + | chr1_2:68978601-68978620 | None:intergenic | 40.0% | |
| !! | GAAGATTCAGTTCTGAAAGC+TGG | - | chr1_2:68978811-68978830 | Msa0087950:CDS | 40.0% |
| ! | ACCTCTTCTGAGTTGGAAAC+GGG | + | chr1_2:68977179-68977198 | None:intergenic | 45.0% |
| CAAGCAAACCTCTTCTGAGT+TGG | + | chr1_2:68977186-68977205 | None:intergenic | 45.0% | |
| !! | TTTATGCAGGGTGTTGCTTC+TGG | - | chr1_2:68977457-68977476 | Msa0087950:CDS | 45.0% |
| !! | GTTGCTTCTGGTTCAACACA+TGG | - | chr1_2:68977469-68977488 | Msa0087950:CDS | 45.0% |
| AGGGATACCAATCAAAGTCG+GGG | - | chr1_2:68977571-68977590 | Msa0087950:CDS | 45.0% | |
| TTCATCTCCCCGACTTTGAT+TGG | + | chr1_2:68977581-68977600 | None:intergenic | 45.0% | |
| GCTGGAGGTGAATTAACAAG+AGG | + | chr1_2:68978229-68978248 | None:intergenic | 45.0% | |
| AGTAACCCTCTGTGCATTCA+AGG | + | chr1_2:68978251-68978270 | None:intergenic | 45.0% | |
| ! | AACTTCTTCTGGAAGGCAAC+CGG | - | chr1_2:68978327-68978346 | Msa0087950:intron | 45.0% |
| TGCAAAGAAGCAGCGTAGTT+CGG | + | chr1_2:68978358-68978377 | None:intergenic | 45.0% | |
| ! | CAAAGCACTCACAACAACTG+AGG | + | chr1_2:68978729-68978748 | None:intergenic | 45.0% |
| !! | ATTCAGTTCTGAAAGCTGGC+AGG | - | chr1_2:68978815-68978834 | Msa0087950:CDS | 45.0% |
| ! | ACCTCTTCTGAGTTGGAAAC+GGG | + | chr1_2:68977179-68977198 | None:intergenic | 45.0% |
| CAAGCAAACCTCTTCTGAGT+TGG | + | chr1_2:68977186-68977205 | None:intergenic | 45.0% | |
| !! | TTTATGCAGGGTGTTGCTTC+TGG | - | chr1_2:68977457-68977476 | Msa0087950:CDS | 45.0% |
| !! | GTTGCTTCTGGTTCAACACA+TGG | - | chr1_2:68977469-68977488 | Msa0087950:CDS | 45.0% |
| AGGGATACCAATCAAAGTCG+GGG | - | chr1_2:68977571-68977590 | Msa0087950:CDS | 45.0% | |
| TTCATCTCCCCGACTTTGAT+TGG | + | chr1_2:68977581-68977600 | None:intergenic | 45.0% | |
| GCTGGAGGTGAATTAACAAG+AGG | + | chr1_2:68978229-68978248 | None:intergenic | 45.0% | |
| AGTAACCCTCTGTGCATTCA+AGG | + | chr1_2:68978251-68978270 | None:intergenic | 45.0% | |
| ! | AACTTCTTCTGGAAGGCAAC+CGG | - | chr1_2:68978327-68978346 | Msa0087950:intron | 45.0% |
| TGCAAAGAAGCAGCGTAGTT+CGG | + | chr1_2:68978358-68978377 | None:intergenic | 45.0% | |
| ! | CAAAGCACTCACAACAACTG+AGG | + | chr1_2:68978729-68978748 | None:intergenic | 45.0% |
| !! | ATTCAGTTCTGAAAGCTGGC+AGG | - | chr1_2:68978815-68978834 | Msa0087950:CDS | 45.0% |
| !!! | AGAATTATTTTAATATTTTA+AGG | - | chr1_2:68977936-68977955 | Msa0087950:intron | 5.0% |
| !!! | AGAATTATTTTAATATTTTA+AGG | - | chr1_2:68977936-68977955 | Msa0087950:intron | 5.0% |
| ! | CTCTTCTGAGTTGGAAACGG+GGG | + | chr1_2:68977177-68977196 | None:intergenic | 50.0% |
| ! | CCTCTTCTGAGTTGGAAACG+GGG | + | chr1_2:68977178-68977197 | None:intergenic | 50.0% |
| TCAAAGTCGGGGAGATGAAG+AGG | - | chr1_2:68977582-68977601 | Msa0087950:CDS | 50.0% | |
| GACGTTGAACTCTCTTGGCA+TGG | - | chr1_2:68978198-68978217 | Msa0087950:intron | 50.0% | |
| TCCAGCCTTGAATGCACAGA+GGG | - | chr1_2:68978243-68978262 | Msa0087950:intron | 50.0% | |
| TCCATTGATATAGGCGCCTG+CGG | + | chr1_2:68978409-68978428 | None:intergenic | 50.0% | |
| AGGCATGAGTCAGATCTCAG+TGG | - | chr1_2:68978502-68978521 | Msa0087950:CDS | 50.0% | |
| GGCATGAGTCAGATCTCAGT+GGG | - | chr1_2:68978503-68978522 | Msa0087950:CDS | 50.0% | |
| GCATGAGTCAGATCTCAGTG+GGG | - | chr1_2:68978504-68978523 | Msa0087950:CDS | 50.0% | |
| TCAGATCTCAGTGGGGAAGA+AGG | - | chr1_2:68978511-68978530 | Msa0087950:CDS | 50.0% | |
| CAGATCTCAGTGGGGAAGAA+GGG | - | chr1_2:68978512-68978531 | Msa0087950:CDS | 50.0% | |
| TGTTGTGAGTGCTTTGCCTC+TGG | - | chr1_2:68978733-68978752 | Msa0087950:intron | 50.0% | |
| TCCTGTACAGTAGACTCCAG+AGG | + | chr1_2:68978752-68978771 | None:intergenic | 50.0% | |
| ! | CTCTTCTGAGTTGGAAACGG+GGG | + | chr1_2:68977177-68977196 | None:intergenic | 50.0% |
| ! | CCTCTTCTGAGTTGGAAACG+GGG | + | chr1_2:68977178-68977197 | None:intergenic | 50.0% |
| TCAAAGTCGGGGAGATGAAG+AGG | - | chr1_2:68977582-68977601 | Msa0087950:CDS | 50.0% | |
| GACGTTGAACTCTCTTGGCA+TGG | - | chr1_2:68978198-68978217 | Msa0087950:intron | 50.0% | |
| TCCAGCCTTGAATGCACAGA+GGG | - | chr1_2:68978243-68978262 | Msa0087950:intron | 50.0% | |
| TCCATTGATATAGGCGCCTG+CGG | + | chr1_2:68978409-68978428 | None:intergenic | 50.0% | |
| AGGCATGAGTCAGATCTCAG+TGG | - | chr1_2:68978502-68978521 | Msa0087950:CDS | 50.0% | |
| GGCATGAGTCAGATCTCAGT+GGG | - | chr1_2:68978503-68978522 | Msa0087950:CDS | 50.0% | |
| GCATGAGTCAGATCTCAGTG+GGG | - | chr1_2:68978504-68978523 | Msa0087950:CDS | 50.0% | |
| TCAGATCTCAGTGGGGAAGA+AGG | - | chr1_2:68978511-68978530 | Msa0087950:CDS | 50.0% | |
| CAGATCTCAGTGGGGAAGAA+GGG | - | chr1_2:68978512-68978531 | Msa0087950:CDS | 50.0% | |
| TGTTGTGAGTGCTTTGCCTC+TGG | - | chr1_2:68978733-68978752 | Msa0087950:intron | 50.0% | |
| TCCTGTACAGTAGACTCCAG+AGG | + | chr1_2:68978752-68978771 | None:intergenic | 50.0% | |
| CCCCGTTTCCAACTCAGAAG+AGG | - | chr1_2:68977175-68977194 | Msa0087950:CDS | 55.0% | |
| AGTCGGGGAGATGAAGAGGT+TGG | - | chr1_2:68977586-68977605 | Msa0087950:CDS | 55.0% | |
| CTCTGTGCATTCAAGGCTGG+AGG | + | chr1_2:68978244-68978263 | None:intergenic | 55.0% | |
| CTCCAGCCTTGAATGCACAG+AGG | - | chr1_2:68978242-68978261 | Msa0087950:intron | 55.0% | |
| ACCCTCTGTGCATTCAAGGC+TGG | + | chr1_2:68978247-68978266 | None:intergenic | 55.0% | |
| ! | GCACAGAGGGTTACTTTGCC+AGG | - | chr1_2:68978256-68978275 | Msa0087950:intron | 55.0% |
| ACCGCAGGCGCCTATATCAA+TGG | - | chr1_2:68978405-68978424 | Msa0087950:CDS | 55.0% | |
| !! | GCCTCTGGAGTCTACTGTAC+AGG | - | chr1_2:68978748-68978767 | Msa0087950:intron | 55.0% |
| CCCCGTTTCCAACTCAGAAG+AGG | - | chr1_2:68977175-68977194 | Msa0087950:CDS | 55.0% | |
| AGTCGGGGAGATGAAGAGGT+TGG | - | chr1_2:68977586-68977605 | Msa0087950:CDS | 55.0% | |
| CTCTGTGCATTCAAGGCTGG+AGG | + | chr1_2:68978244-68978263 | None:intergenic | 55.0% | |
| CTCCAGCCTTGAATGCACAG+AGG | - | chr1_2:68978242-68978261 | Msa0087950:intron | 55.0% | |
| ACCCTCTGTGCATTCAAGGC+TGG | + | chr1_2:68978247-68978266 | None:intergenic | 55.0% | |
| ! | GCACAGAGGGTTACTTTGCC+AGG | - | chr1_2:68978256-68978275 | Msa0087950:intron | 55.0% |
| ACCGCAGGCGCCTATATCAA+TGG | - | chr1_2:68978405-68978424 | Msa0087950:CDS | 55.0% | |
| !! | GCCTCTGGAGTCTACTGTAC+AGG | - | chr1_2:68978748-68978767 | Msa0087950:intron | 55.0% |
| GCAGCGTAGTTCGGCAGTTC+CGG | + | chr1_2:68978349-68978368 | None:intergenic | 60.0% | |
| ! | CCTGCGGTAGTTGATGCCCT+TGG | + | chr1_2:68978393-68978412 | None:intergenic | 60.0% |
| !! | CCAAGGGCATCAACTACCGC+AGG | - | chr1_2:68978390-68978409 | Msa0087950:intron | 60.0% |
| GCAGCGTAGTTCGGCAGTTC+CGG | + | chr1_2:68978349-68978368 | None:intergenic | 60.0% | |
| ! | CCTGCGGTAGTTGATGCCCT+TGG | + | chr1_2:68978393-68978412 | None:intergenic | 60.0% |
| !! | CCAAGGGCATCAACTACCGC+AGG | - | chr1_2:68978390-68978409 | Msa0087950:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 68977149 | 68978855 | 68977149 | ID=Msa0087950;Name=Msa0087950 |
| chr1_2 | mRNA | 68977149 | 68978855 | 68977149 | ID=Msa0087950-mRNA-1;Parent=Msa0087950;Name=Msa0087950-mRNA-1;_AED=0.36;_eAED=0.42;_QI=0|0|0|0.75|1|1|4|0|255 |
| chr1_2 | exon | 68978808 | 68978855 | 68978808 | ID=Msa0087950-mRNA-1:exon:23646;Parent=Msa0087950-mRNA-1 |
| chr1_2 | exon | 68978401 | 68978538 | 68978401 | ID=Msa0087950-mRNA-1:exon:23645;Parent=Msa0087950-mRNA-1 |
| chr1_2 | exon | 68977426 | 68977883 | 68977426 | ID=Msa0087950-mRNA-1:exon:23644;Parent=Msa0087950-mRNA-1 |
| chr1_2 | exon | 68977149 | 68977272 | 68977149 | ID=Msa0087950-mRNA-1:exon:23643;Parent=Msa0087950-mRNA-1 |
| chr1_2 | CDS | 68978808 | 68978855 | 68978808 | ID=Msa0087950-mRNA-1:cds;Parent=Msa0087950-mRNA-1 |
| chr1_2 | CDS | 68978401 | 68978538 | 68978401 | ID=Msa0087950-mRNA-1:cds;Parent=Msa0087950-mRNA-1 |
| chr1_2 | CDS | 68977426 | 68977883 | 68977426 | ID=Msa0087950-mRNA-1:cds;Parent=Msa0087950-mRNA-1 |
| chr1_2 | CDS | 68977149 | 68977272 | 68977149 | ID=Msa0087950-mRNA-1:cds;Parent=Msa0087950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
