Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0087980 | XP_024630895.1 | 87.097 | 558 | 61 | 3 | 1 | 557 | 1 | 548 | 0.0 | 987 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0087980 | sp|Q9LUI3|TSO1_ARATH | 26.714 | 569 | 338 | 14 | 16 | 553 | 22 | 542 | 2.60e-42 | 164 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0087980 | A0A396K8E7 | 87.097 | 558 | 61 | 3 | 1 | 557 | 1 | 548 | 0.0 | 985 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0087980 | TF | CPP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0087980 | MtrunA17_Chr1g0205031 | 87.097 | 558 | 61 | 3 | 1 | 557 | 1 | 548 | 0.0 | 985 |
| Msa0087980 | MtrunA17_Chr5g0394661 | 34.494 | 632 | 273 | 17 | 16 | 543 | 23 | 617 | 1.05e-79 | 266 |
| Msa0087980 | MtrunA17_Chr1g0205021 | 40.523 | 306 | 78 | 8 | 16 | 294 | 2 | 230 | 7.41e-49 | 169 |
| Msa0087980 | MtrunA17_Chr1g0205011 | 51.852 | 216 | 68 | 6 | 235 | 429 | 4 | 204 | 9.77e-46 | 160 |
| Msa0087980 | MtrunA17_Chr1g0149101 | 37.415 | 147 | 88 | 4 | 415 | 558 | 500 | 645 | 1.28e-23 | 105 |
| Msa0087980 | MtrunA17_Chr8g0390351 | 37.594 | 133 | 73 | 4 | 415 | 543 | 85 | 211 | 1.07e-17 | 86.7 |
| Msa0087980 | MtrunA17_Chr6g0485811 | 39.516 | 124 | 65 | 4 | 424 | 543 | 139 | 256 | 1.81e-17 | 85.9 |
| Msa0087980 | MtrunA17_Chr1g0205001 | 28.676 | 272 | 125 | 5 | 189 | 460 | 18 | 220 | 4.77e-17 | 80.5 |
| Msa0087980 | MtrunA17_Chr1g0205001 | 73.810 | 42 | 11 | 0 | 15 | 56 | 61 | 102 | 8.55e-14 | 70.9 |
| Msa0087980 | MtrunA17_Chr3g0139951 | 36.923 | 130 | 70 | 4 | 417 | 537 | 143 | 269 | 6.99e-15 | 77.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0087980 | AT3G22780.1 | 26.714 | 569 | 338 | 14 | 16 | 553 | 22 | 542 | 2.64e-43 | 164 |
| Msa0087980 | AT3G22760.1 | 27.306 | 553 | 285 | 16 | 16 | 555 | 21 | 469 | 1.04e-40 | 156 |
| Msa0087980 | AT4G14770.1 | 28.671 | 572 | 291 | 24 | 9 | 543 | 13 | 504 | 1.64e-40 | 156 |
| Msa0087980 | AT4G14770.3 | 28.369 | 564 | 288 | 23 | 16 | 543 | 2 | 485 | 4.38e-40 | 155 |
| Msa0087980 | AT4G14770.2 | 28.419 | 563 | 287 | 23 | 17 | 543 | 2 | 484 | 6.31e-40 | 154 |
| Msa0087980 | AT3G22760.2 | 31.579 | 323 | 171 | 6 | 233 | 555 | 74 | 346 | 8.56e-39 | 149 |
| Msa0087980 | AT3G04850.1 | 33.725 | 255 | 117 | 7 | 294 | 537 | 363 | 576 | 1.76e-30 | 126 |
| Msa0087980 | AT5G25790.3 | 36.496 | 137 | 77 | 4 | 424 | 560 | 106 | 232 | 1.59e-17 | 85.9 |
| Msa0087980 | AT5G25790.2 | 34.307 | 137 | 84 | 3 | 424 | 560 | 106 | 236 | 9.29e-17 | 83.6 |
| Msa0087980 | AT5G25790.1 | 34.307 | 137 | 84 | 3 | 424 | 560 | 106 | 236 | 1.57e-16 | 82.8 |
| Msa0087980 | AT2G20110.3 | 38.583 | 127 | 68 | 4 | 415 | 537 | 121 | 241 | 8.59e-16 | 80.9 |
| Msa0087980 | AT2G20110.1 | 38.583 | 127 | 68 | 4 | 415 | 537 | 121 | 241 | 8.75e-16 | 80.9 |
| Msa0087980 | AT2G20110.2 | 38.583 | 127 | 68 | 4 | 415 | 537 | 121 | 241 | 1.09e-15 | 80.5 |
| Msa0087980 | AT4G29000.1 | 34.884 | 129 | 82 | 2 | 415 | 543 | 134 | 260 | 2.99e-15 | 79.3 |
| Msa0087980 | AT3G16160.1 | 36.364 | 121 | 72 | 3 | 415 | 535 | 68 | 183 | 1.75e-12 | 69.7 |
Find 94 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTGCCAATGTTGCTTTAA+TGG | 0.092114 | 1_2:-69006022 | Msa0087980:CDS |
| TATGCCTTCGTAATGATTTA+AGG | 0.098318 | 1_2:+69005299 | None:intergenic |
| CCAGAATTCTTTCGAACTTT+AGG | 0.204484 | 1_2:+69004243 | None:intergenic |
| CCTAAAGTTCGAAAGAATTC+TGG | 0.241815 | 1_2:-69004243 | Msa0087980:CDS |
| GACGAGTGAAGTGCAATTTA+AGG | 0.271122 | 1_2:-69005073 | Msa0087980:CDS |
| TTGCACTTCACTCGTCCTTT+TGG | 0.274158 | 1_2:+69005080 | None:intergenic |
| CTTTGAAGCTGGAGCTTTGT+TGG | 0.274516 | 1_2:+69004110 | None:intergenic |
| TCGATTGATCTAGTTTCTTC+TGG | 0.291859 | 1_2:-69004988 | Msa0087980:CDS |
| TAAGTGCAGCTCGGTGATTC+AGG | 0.293566 | 1_2:+69005246 | None:intergenic |
| TACTGGTAGATTGTGGTAAC+AGG | 0.297737 | 1_2:+69006160 | None:intergenic |
| TTTGAAGCTGGAGCTTTGTT+GGG | 0.308021 | 1_2:+69004111 | None:intergenic |
| TTTCTGTCTGTTGCGGCTAT+TGG | 0.313269 | 1_2:+69006060 | None:intergenic |
| GAATATGGACTCGTCGTTAA+AGG | 0.316508 | 1_2:+69006571 | None:intergenic |
| TTGAAGGTGGAACATTTATT+CGG | 0.321966 | 1_2:-69006236 | Msa0087980:CDS |
| ACTGTTGACCCACTTGCTTT+TGG | 0.345247 | 1_2:-69006117 | Msa0087980:CDS |
| CACCCTTCACATTTACAACT+TGG | 0.349859 | 1_2:+69003916 | None:intergenic |
| CAAGTACCTCGTGAGGAATA+TGG | 0.357398 | 1_2:+69006556 | None:intergenic |
| GCATCATCACTTGAGATTTG+AGG | 0.360494 | 1_2:+69006336 | None:intergenic |
| CACCAATGGAGACACATTTA+CGG | 0.379389 | 1_2:-69005173 | Msa0087980:CDS |
| ACAGCCTCAGATGAAAGTTC+AGG | 0.391141 | 1_2:+69006435 | None:intergenic |
| CTGCGTCGTCGCTTTGAAGC+TGG | 0.396100 | 1_2:+69004099 | None:intergenic |
| TGAAATTGAAGACAATCCTT+TGG | 0.408389 | 1_2:-69006085 | Msa0087980:CDS |
| AAGTCATCAGTTCACATTCC+TGG | 0.424450 | 1_2:-69005126 | Msa0087980:CDS |
| AGAGTTGCTCCTTTGCATAC+TGG | 0.425375 | 1_2:+69005410 | None:intergenic |
| AATTGTGGCTGCTTTGCTGC+TGG | 0.427566 | 1_2:-69004381 | Msa0087980:CDS |
| AAGTATCTTCTTGAATTACT+TGG | 0.428004 | 1_2:-69006312 | Msa0087980:CDS |
| AAGTTATTGTAATCACAATC+TGG | 0.434332 | 1_2:+69006207 | None:intergenic |
| ACCCTTCACATTTACAACTT+GGG | 0.434704 | 1_2:+69003917 | None:intergenic |
| TGAAGGTGGAACATTTATTC+GGG | 0.437173 | 1_2:-69006235 | Msa0087980:CDS |
| TAGTTTCTGACCACAATTTG+AGG | 0.447183 | 1_2:+69004213 | None:intergenic |
| CCCTTCACATTTACAACTTG+GGG | 0.459373 | 1_2:+69003918 | None:intergenic |
| TTAAATATTTCTGTAAGTCA+AGG | 0.471447 | 1_2:-69005219 | Msa0087980:CDS |
| AGTTAGATCAAAACATGAAA+AGG | 0.487287 | 1_2:-69005035 | Msa0087980:CDS |
| TTCTGGTTCAGAACATGTAA+AGG | 0.491375 | 1_2:-69004971 | Msa0087980:CDS |
| TCTTGTACATCCGTACCATC+TGG | 0.499848 | 1_2:+69006279 | None:intergenic |
| CCTTCGTAATGATTTAAGGC+TGG | 0.512377 | 1_2:+69005303 | None:intergenic |
| GCTATCCATTAAAGCAACAT+TGG | 0.513739 | 1_2:+69006017 | None:intergenic |
| TCTGTCAGAGTATCCGCAAA+AGG | 0.520220 | 1_2:-69004930 | Msa0087980:CDS |
| TAAATATTTCTGTAAGTCAA+GGG | 0.524834 | 1_2:-69005218 | Msa0087980:CDS |
| TGGTTCCTCACCTCAAATTG+TGG | 0.524835 | 1_2:-69004223 | Msa0087980:intron |
| GCAGAATACGATGCAAGTGC+AGG | 0.525356 | 1_2:-69004080 | Msa0087980:CDS |
| CGAACTTTAGGAACAAATGC+AGG | 0.526329 | 1_2:+69004255 | None:intergenic |
| CGAAAATATACATGGTAGGA+AGG | 0.533470 | 1_2:-69003893 | Msa0087980:CDS |
| TGCTTGATTTCTGTCTGTTG+CGG | 0.536356 | 1_2:+69006053 | None:intergenic |
| AGAGTATCCGCAAAAGGAAG+AGG | 0.539876 | 1_2:-69004924 | Msa0087980:CDS |
| TTGAAGCTGGAGCTTTGTTG+GGG | 0.541047 | 1_2:+69004112 | None:intergenic |
| GTTGCGGCTATTGGTTCCAA+AGG | 0.544179 | 1_2:+69006069 | None:intergenic |
| TTAAAGGAGATAGAGTATTG+AGG | 0.545460 | 1_2:+69006681 | None:intergenic |
| CCTCTTGTGAGTTGGAAACA+AGG | 0.546159 | 1_2:+69006941 | None:intergenic |
| TTCAGAACATGTAAAGGAAG+AGG | 0.548580 | 1_2:-69004965 | Msa0087980:CDS |
| ATACAGTTCTGCAAGCTCGC+AGG | 0.548799 | 1_2:-69004299 | Msa0087980:CDS |
| CCTTGTTTCCAACTCACAAG+AGG | 0.548913 | 1_2:-69006941 | Msa0087980:intron |
| TCCGTCAGAGTACTCCCAAA+AGG | 0.555631 | 1_2:-69005095 | Msa0087980:CDS |
| ACTATGACGCTGAACTCACT+TGG | 0.558600 | 1_2:-69006629 | Msa0087980:CDS |
| ATCTCAAGTCTCTGCACCAA+TGG | 0.560130 | 1_2:-69005187 | Msa0087980:CDS |
| ATGAAAAGATGTCTTCTCAA+AGG | 0.565868 | 1_2:-69005272 | Msa0087980:CDS |
| GCTGCTGGAGTCTACTGCAC+AGG | 0.566140 | 1_2:-69004366 | Msa0087980:CDS |
| CTCTGACGGAAATCTTCACC+AGG | 0.567030 | 1_2:+69005108 | None:intergenic |
| AAACATGAAAAGGACGATGA+AGG | 0.570624 | 1_2:-69005025 | Msa0087980:CDS |
| AGCCGTAAATGTGTCTCCAT+TGG | 0.572557 | 1_2:+69005171 | None:intergenic |
| CTCTTGTGAGTTGGAAACAA+GGG | 0.576484 | 1_2:+69006942 | None:intergenic |
| GACGCTGAACTCACTTGGCA+TGG | 0.578891 | 1_2:-69006624 | Msa0087980:CDS |
| CTACAGATTCAACTCATGCA+TGG | 0.581951 | 1_2:-69006383 | Msa0087980:CDS |
| CAAGCAAGAACCAGATGGTA+CGG | 0.582545 | 1_2:-69006289 | Msa0087980:CDS |
| AGTATACAGATGAGCTGTCA+AGG | 0.583545 | 1_2:-69005450 | Msa0087980:CDS |
| TTGCTATTACTGGTAGATTG+TGG | 0.588055 | 1_2:+69006153 | None:intergenic |
| AAATCCTGAACTTTCATCTG+AGG | 0.591883 | 1_2:-69006439 | Msa0087980:CDS |
| GGTGGAACATTTATTCGGGA+AGG | 0.592387 | 1_2:-69006231 | Msa0087980:CDS |
| ACATCGAGTGATGTGAAAAG+AGG | 0.592896 | 1_2:+69006596 | None:intergenic |
| ACGATGAAGGTGCATAGGAA+AGG | 0.596875 | 1_2:-69005012 | Msa0087980:CDS |
| GATAGCAATCAAATTAAGAG+AGG | 0.597084 | 1_2:-69006000 | Msa0087980:CDS |
| CAACAGACAGAAATCAAGCA+CGG | 0.597880 | 1_2:-69006050 | Msa0087980:CDS |
| ATAGCAATCAAATTAAGAGA+GGG | 0.602322 | 1_2:-69005999 | Msa0087980:CDS |
| AAAGGACGATGAAGGTGCAT+AGG | 0.604624 | 1_2:-69005017 | Msa0087980:CDS |
| TCTGACCACAATTTGAGGTG+AGG | 0.607327 | 1_2:+69004218 | None:intergenic |
| TCCCCAAGTTGTAAATGTGA+AGG | 0.615749 | 1_2:-69003919 | Msa0087980:CDS |
| CATGCATGAGTTGAATCTGT+AGG | 0.615864 | 1_2:+69006384 | None:intergenic |
| GGTGCGAAAATATACATGGT+AGG | 0.616427 | 1_2:-69003897 | Msa0087980:CDS |
| GTCACAGATGTAGTTGAAGG+TGG | 0.621901 | 1_2:-69006249 | Msa0087980:CDS |
| AGGAATGTGAACTGATGACT+TGG | 0.627401 | 1_2:+69005128 | None:intergenic |
| TTTAAAGAATAAGTGCAGCT+CGG | 0.628487 | 1_2:+69005237 | None:intergenic |
| ACTTTAGGAACAAATGCAGG+TGG | 0.632470 | 1_2:+69004258 | None:intergenic |
| CTGAGATGACCAGTATGCAA+AGG | 0.633227 | 1_2:-69005419 | Msa0087980:CDS |
| ACTGGTAGATTGTGGTAACA+GGG | 0.636581 | 1_2:+69006161 | None:intergenic |
| TCTGTCACAGATGTAGTTGA+AGG | 0.639278 | 1_2:-69006252 | Msa0087980:CDS |
| AATTAAGAGAGGGGATGATG+AGG | 0.639810 | 1_2:-69005989 | Msa0087980:intron |
| GAAGGGTGCGAAAATATACA+TGG | 0.643125 | 1_2:-69003901 | Msa0087980:CDS |
| CTTGGCAAGCAAGAACCAGA+TGG | 0.652633 | 1_2:-69006294 | Msa0087980:CDS |
| AAGCAGTCTTGACATGAGCA+AGG | 0.654291 | 1_2:+69004342 | None:intergenic |
| AAAGGAGCAACTCTGATGAG+AGG | 0.655315 | 1_2:-69005401 | Msa0087980:CDS |
| TAGCAATCAAATTAAGAGAG+GGG | 0.656836 | 1_2:-69005998 | Msa0087980:CDS |
| CCCCAAGTTGTAAATGTGAA+GGG | 0.657560 | 1_2:-69003918 | Msa0087980:CDS |
| CCAGCCTTAAATCATTACGA+AGG | 0.687773 | 1_2:-69005303 | Msa0087980:CDS |
| ACGAGTCCATATTCCTCACG+AGG | 0.713943 | 1_2:-69006562 | Msa0087980:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAACTAACATTTAATAA+TGG | + | chr1_2:69005935-69005954 | None:intergenic | 10.0% |
| !! | AATATCAATATCATTAATAT+AGG | + | chr1_2:69006639-69006658 | None:intergenic | 10.0% |
| !! | TATAATAATATGAATTACAA+TGG | - | chr1_2:69006812-69006831 | Msa0087980:intron | 10.0% |
| !! | ATAATAATATGAATTACAAT+GGG | - | chr1_2:69006813-69006832 | Msa0087980:intron | 10.0% |
| !!! | ATTTTTCATATTTTTATTGC+AGG | - | chr1_2:69004063-69004082 | Msa0087980:CDS | 15.0% |
| !!! | TGAAAGTAATTTTATATCTA+GGG | + | chr1_2:69006221-69006240 | None:intergenic | 15.0% |
| !! | AATAAAAACCAAGAAAATCA+AGG | + | chr1_2:69003943-69003962 | None:intergenic | 20.0% |
| !!! | CATTTTATAATTGCTATTAC+TGG | + | chr1_2:69004646-69004665 | None:intergenic | 20.0% |
| !!! | TTAAATATTTCTGTAAGTCA+AGG | - | chr1_2:69005567-69005586 | Msa0087980:intron | 20.0% |
| !!! | TAAATATTTCTGTAAGTCAA+GGG | - | chr1_2:69005568-69005587 | Msa0087980:intron | 20.0% |
| !!! | ATAAAACTTGTTCCTTTTTT+TGG | - | chr1_2:69006077-69006096 | Msa0087980:CDS | 20.0% |
| !!! | TAAAACTTGTTCCTTTTTTT+GGG | - | chr1_2:69006078-69006097 | Msa0087980:CDS | 20.0% |
| !!! | GAAAGTAATTTTATATCTAG+GGG | + | chr1_2:69006220-69006239 | None:intergenic | 20.0% |
| !!! | GTGAAAGTAATTTTATATCT+AGG | + | chr1_2:69006222-69006241 | None:intergenic | 20.0% |
| !!! | ATTTAAGCTTTGACAATAAT+TGG | - | chr1_2:69006328-69006347 | Msa0087980:CDS | 20.0% |
| !!! | TTTAAGCTTTGACAATAATT+GGG | - | chr1_2:69006329-69006348 | Msa0087980:CDS | 20.0% |
| !! | AAGCAAAAAAAGTAAACAAA+AGG | + | chr1_2:69006375-69006394 | None:intergenic | 20.0% |
| !! | CATACATAATATGTAAACAA+CGG | + | chr1_2:69006778-69006797 | None:intergenic | 20.0% |
| ! | ATGGAGATTAATCATATCTA+AGG | + | chr1_2:69004023-69004042 | None:intergenic | 25.0% |
| ! | TTAGATATGATTAATCTCCA+TGG | - | chr1_2:69004022-69004041 | Msa0087980:intron | 25.0% |
| ! | TAAATGCAATAAGAATACCA+TGG | + | chr1_2:69004042-69004061 | None:intergenic | 25.0% |
| !!! | ACATACTTTTTGGTGTTTAA+AGG | + | chr1_2:69004124-69004143 | None:intergenic | 25.0% |
| !! | TTAAACACCAAAAAGTATGT+TGG | - | chr1_2:69004124-69004143 | Msa0087980:intron | 25.0% |
| ! | AAGTATCTTCTTGAATTACT+TGG | - | chr1_2:69004474-69004493 | Msa0087980:intron | 25.0% |
| ! | AAGTTATTGTAATCACAATC+TGG | + | chr1_2:69004582-69004601 | None:intergenic | 25.0% |
| ! | ATAGCAATCAAATTAAGAGA+GGG | - | chr1_2:69004787-69004806 | Msa0087980:intron | 25.0% |
| !!! | CTGTATTTTTTATGTCCATT+CGG | - | chr1_2:69004945-69004964 | Msa0087980:CDS | 25.0% |
| !!! | TCAGTTTAACCTGTTATTTT+AGG | - | chr1_2:69005072-69005091 | Msa0087980:CDS | 25.0% |
| !!! | TTTAACCTGTTATTTTAGGT+GGG | - | chr1_2:69005076-69005095 | Msa0087980:CDS | 25.0% |
| ! | AGTTAGATCAAAACATGAAA+AGG | - | chr1_2:69005751-69005770 | Msa0087980:intron | 25.0% |
| ! | AAACAAAAGGTTAATCTGAA+AGG | + | chr1_2:69006362-69006381 | None:intergenic | 25.0% |
| ! | GATATTGATATTCTTCTTGT+AGG | - | chr1_2:69006647-69006666 | Msa0087980:CDS | 25.0% |
| !! | TAAACGTTGTGAATGTTTTA+AGG | - | chr1_2:69006746-69006765 | Msa0087980:intron | 25.0% |
| ! | ATAATATGAATTACAATGGG+TGG | - | chr1_2:69006816-69006835 | Msa0087980:intron | 25.0% |
| !! | AAGAAAATCAAGGTTGATAG+AGG | + | chr1_2:69003933-69003952 | None:intergenic | 30.0% |
| ! | TCTATCAACCTTGATTTTCT+TGG | - | chr1_2:69003932-69003951 | Msa0087980:CDS | 30.0% |
| !! | TTAAAGGAGATAGAGTATTG+AGG | + | chr1_2:69004108-69004127 | None:intergenic | 30.0% |
| TTGAAGGTGGAACATTTATT+CGG | - | chr1_2:69004550-69004569 | Msa0087980:intron | 30.0% | |
| TGAAATTGAAGACAATCCTT+TGG | - | chr1_2:69004701-69004720 | Msa0087980:intron | 30.0% | |
| GATAGCAATCAAATTAAGAG+AGG | - | chr1_2:69004786-69004805 | Msa0087980:intron | 30.0% | |
| TAGCAATCAAATTAAGAGAG+GGG | - | chr1_2:69004788-69004807 | Msa0087980:intron | 30.0% | |
| GGTCAGAAAATCAAATCTAT+TGG | - | chr1_2:69004818-69004837 | Msa0087980:intron | 30.0% | |
| CGAATGGACATAAAAAATAC+AGG | + | chr1_2:69004947-69004966 | None:intergenic | 30.0% | |
| CTGTACTTTCAAAGTAACAA+TGG | + | chr1_2:69005010-69005029 | None:intergenic | 30.0% | |
| AAGTACAGTCTATACAAAGT+AGG | - | chr1_2:69005022-69005041 | Msa0087980:CDS | 30.0% | |
| AGTACAGTCTATACAAAGTA+GGG | - | chr1_2:69005023-69005042 | Msa0087980:CDS | 30.0% | |
| AACAGGTTAAACTGATATGT+TGG | + | chr1_2:69005067-69005086 | None:intergenic | 30.0% | |
| !!! | GTTTAACCTGTTATTTTAGG+TGG | - | chr1_2:69005075-69005094 | Msa0087980:CDS | 30.0% |
| !!! | TTAACCTGTTATTTTAGGTG+GGG | - | chr1_2:69005077-69005096 | Msa0087980:CDS | 30.0% |
| TACTCTATTATGACATGCAA+TGG | + | chr1_2:69005181-69005200 | None:intergenic | 30.0% | |
| TATGCCTTCGTAATGATTTA+AGG | + | chr1_2:69005490-69005509 | None:intergenic | 30.0% | |
| ATGAAAAGATGTCTTCTCAA+AGG | - | chr1_2:69005514-69005533 | Msa0087980:intron | 30.0% | |
| TTTAAAGAATAAGTGCAGCT+CGG | + | chr1_2:69005552-69005571 | None:intergenic | 30.0% | |
| GAATAAAGATTATCAAGCAG+AGG | + | chr1_2:69005913-69005932 | None:intergenic | 30.0% | |
| !! | TTACCTTCATTTTAGTAAGC+TGG | - | chr1_2:69006140-69006159 | Msa0087980:CDS | 30.0% |
| AAACCAGCTTACTAAAATGA+AGG | + | chr1_2:69006146-69006165 | None:intergenic | 30.0% | |
| TTTATATCTAGGGGATGTAA+AGG | + | chr1_2:69006211-69006230 | None:intergenic | 30.0% | |
| !!! | TGCTTCTTTTTCAGTAATTG+TGG | - | chr1_2:69006390-69006409 | Msa0087980:CDS | 30.0% |
| AAATGCAGCATTGTGATACA+AGG | + | chr1_2:69003877-69003896 | None:intergenic | 35.0% | |
| ! | ACCAAAAAGTATGTTGGAGT+TGG | - | chr1_2:69004130-69004149 | Msa0087980:intron | 35.0% |
| ! | TCCAACTCCAACATACTTTT+TGG | + | chr1_2:69004134-69004153 | None:intergenic | 35.0% |
| ! | ACGAGGTACTTGTAAAATCT+TGG | - | chr1_2:69004241-69004260 | Msa0087980:CDS | 35.0% |
| TTGATATCTCTCTCATTGCT+AGG | - | chr1_2:69004304-69004323 | Msa0087980:CDS | 35.0% | |
| AAATCCTGAACTTTCATCTG+AGG | - | chr1_2:69004347-69004366 | Msa0087980:CDS | 35.0% | |
| TGAAGGTGGAACATTTATTC+GGG | - | chr1_2:69004551-69004570 | Msa0087980:intron | 35.0% | |
| ! | TTGCTATTACTGGTAGATTG+TGG | + | chr1_2:69004636-69004655 | None:intergenic | 35.0% |
| !! | TCTTGCCAATGTTGCTTTAA+TGG | - | chr1_2:69004764-69004783 | Msa0087980:intron | 35.0% |
| GCTATCCATTAAAGCAACAT+TGG | + | chr1_2:69004772-69004791 | None:intergenic | 35.0% | |
| !! | AATGGATTAAACGATCCGAA+TGG | + | chr1_2:69004963-69004982 | None:intergenic | 35.0% |
| CAGTAACTCAAACTTGTGAA+TGG | + | chr1_2:69004981-69005000 | None:intergenic | 35.0% | |
| GTACAGTCTATACAAAGTAG+GGG | - | chr1_2:69005024-69005043 | Msa0087980:CDS | 35.0% | |
| TAACGACTCTTTCTGTGAAA+CGG | + | chr1_2:69005143-69005162 | None:intergenic | 35.0% | |
| ! | AAGTGTGTTTTGCAAGGAAA+TGG | - | chr1_2:69005441-69005460 | Msa0087980:CDS | 35.0% |
| ! | TGCAAGGAAATGGTTTTTAC+TGG | - | chr1_2:69005451-69005470 | Msa0087980:CDS | 35.0% |
| AAACATGAAAAGGACGATGA+AGG | - | chr1_2:69005761-69005780 | Msa0087980:intron | 35.0% | |
| ! | TCGATTGATCTAGTTTCTTC+TGG | - | chr1_2:69005798-69005817 | Msa0087980:intron | 35.0% |
| !! | TTCTGGTTCAGAACATGTAA+AGG | - | chr1_2:69005815-69005834 | Msa0087980:intron | 35.0% |
| TTCAGAACATGTAAAGGAAG+AGG | - | chr1_2:69005821-69005840 | Msa0087980:intron | 35.0% | |
| AAGTCAGATCTAACTAGGAA+AGG | - | chr1_2:69005999-69006018 | Msa0087980:CDS | 35.0% | |
| TTGTGCTATCACCCAAAAAA+AGG | + | chr1_2:69006092-69006111 | None:intergenic | 35.0% | |
| CCAGAATTCTTTCGAACTTT+AGG | + | chr1_2:69006546-69006565 | None:intergenic | 35.0% | |
| CCTAAAGTTCGAAAGAATTC+TGG | - | chr1_2:69006543-69006562 | Msa0087980:intron | 35.0% | |
| TAGTTTCTGACCACAATTTG+AGG | + | chr1_2:69006576-69006595 | None:intergenic | 35.0% | |
| ! | AATGGGTGGTTTTCTTTTGA+AGG | - | chr1_2:69006830-69006849 | Msa0087980:intron | 35.0% |
| ! | ATGGGTGGTTTTCTTTTGAA+GGG | - | chr1_2:69006831-69006850 | Msa0087980:intron | 35.0% |
| ACCCTTCACATTTACAACTT+GGG | + | chr1_2:69006872-69006891 | None:intergenic | 35.0% | |
| CGAAAATATACATGGTAGGA+AGG | - | chr1_2:69006893-69006912 | Msa0087980:intron | 35.0% | |
| ! | CTCTTGTGAGTTGGAAACAA+GGG | + | chr1_2:69003847-69003866 | None:intergenic | 40.0% |
| GGAAAAAACCTCTTGTGAGT+TGG | + | chr1_2:69003856-69003875 | None:intergenic | 40.0% | |
| !! | GGTTGATAGAGGAAAGAGAA+AGG | + | chr1_2:69003922-69003941 | None:intergenic | 40.0% |
| ACATCGAGTGATGTGAAAAG+AGG | + | chr1_2:69004193-69004212 | None:intergenic | 40.0% | |
| GAATATGGACTCGTCGTTAA+AGG | + | chr1_2:69004218-69004237 | None:intergenic | 40.0% | |
| ! | GATTTTACAAGTACCTCGTG+AGG | + | chr1_2:69004240-69004259 | None:intergenic | 40.0% |
| ! | CATGCATGAGTTGAATCTGT+AGG | + | chr1_2:69004405-69004424 | None:intergenic | 40.0% |
| CTACAGATTCAACTCATGCA+TGG | - | chr1_2:69004403-69004422 | Msa0087980:intron | 40.0% | |
| GCATCATCACTTGAGATTTG+AGG | + | chr1_2:69004453-69004472 | None:intergenic | 40.0% | |
| TCTGTCACAGATGTAGTTGA+AGG | - | chr1_2:69004534-69004553 | Msa0087980:intron | 40.0% | |
| ACTGGTAGATTGTGGTAACA+GGG | + | chr1_2:69004628-69004647 | None:intergenic | 40.0% | |
| TACTGGTAGATTGTGGTAAC+AGG | + | chr1_2:69004629-69004648 | None:intergenic | 40.0% | |
| !! | GTTTTGAGCCAAAAGCAAGT+GGG | + | chr1_2:69004680-69004699 | None:intergenic | 40.0% |
| !! | TGTTTTGAGCCAAAAGCAAG+TGG | + | chr1_2:69004681-69004700 | None:intergenic | 40.0% |
| TGCTTGATTTCTGTCTGTTG+CGG | + | chr1_2:69004736-69004755 | None:intergenic | 40.0% | |
| CAACAGACAGAAATCAAGCA+CGG | - | chr1_2:69004736-69004755 | Msa0087980:intron | 40.0% | |
| AATTAAGAGAGGGGATGATG+AGG | - | chr1_2:69004797-69004816 | Msa0087980:intron | 40.0% | |
| TTCACCCCACCTAAAATAAC+AGG | + | chr1_2:69005084-69005103 | None:intergenic | 40.0% | |
| !! | ATTTTAGGTGGGGTGAATTG+AGG | - | chr1_2:69005087-69005106 | Msa0087980:CDS | 40.0% |
| AACGACTCTTTCTGTGAAAC+GGG | + | chr1_2:69005142-69005161 | None:intergenic | 40.0% | |
| AGTATACAGATGAGCTGTCA+AGG | - | chr1_2:69005336-69005355 | Msa0087980:CDS | 40.0% | |
| !! | TCACAGAAGTGTGTTTTGCA+AGG | - | chr1_2:69005435-69005454 | Msa0087980:CDS | 40.0% |
| ! | CCTTCGTAATGATTTAAGGC+TGG | + | chr1_2:69005486-69005505 | None:intergenic | 40.0% |
| CCAGCCTTAAATCATTACGA+AGG | - | chr1_2:69005483-69005502 | Msa0087980:intron | 40.0% | |
| CACCAATGGAGACACATTTA+CGG | - | chr1_2:69005613-69005632 | Msa0087980:intron | 40.0% | |
| AGGAATGTGAACTGATGACT+TGG | + | chr1_2:69005661-69005680 | None:intergenic | 40.0% | |
| AAGTCATCAGTTCACATTCC+TGG | - | chr1_2:69005660-69005679 | Msa0087980:intron | 40.0% | |
| GACGAGTGAAGTGCAATTTA+AGG | - | chr1_2:69005713-69005732 | Msa0087980:intron | 40.0% | |
| ! | ACACTTTCCTCTTCCTTTTG+CGG | + | chr1_2:69005872-69005891 | None:intergenic | 40.0% |
| !! | CAAAGTCGAACTTTGGTGTT+AGG | + | chr1_2:69005972-69005991 | None:intergenic | 40.0% |
| GGAACAAGTCAGATCTAACT+AGG | - | chr1_2:69005994-69006013 | Msa0087980:CDS | 40.0% | |
| TCAGATCTAACTAGGAAAGG+AGG | - | chr1_2:69006002-69006021 | Msa0087980:CDS | 40.0% | |
| CAGATCTAACTAGGAAAGGA+GGG | - | chr1_2:69006003-69006022 | Msa0087980:CDS | 40.0% | |
| AGATCTAACTAGGAAAGGAG+GGG | - | chr1_2:69006004-69006023 | Msa0087980:CDS | 40.0% | |
| ATTAGACTCGAGTAGAGTCT+TGG | + | chr1_2:69006244-69006263 | None:intergenic | 40.0% | |
| ! | ACTTTAGGAACAAATGCAGG+TGG | + | chr1_2:69006531-69006550 | None:intergenic | 40.0% |
| ! | CGAACTTTAGGAACAAATGC+AGG | + | chr1_2:69006534-69006553 | None:intergenic | 40.0% |
| !! | TTTGAAGCTGGAGCTTTGTT+GGG | + | chr1_2:69006678-69006697 | None:intergenic | 40.0% |
| TCCCCAAGTTGTAAATGTGA+AGG | - | chr1_2:69006867-69006886 | Msa0087980:intron | 40.0% | |
| CCCTTCACATTTACAACTTG+GGG | + | chr1_2:69006871-69006890 | None:intergenic | 40.0% | |
| CCCCAAGTTGTAAATGTGAA+GGG | - | chr1_2:69006868-69006887 | Msa0087980:intron | 40.0% | |
| CACCCTTCACATTTACAACT+TGG | + | chr1_2:69006873-69006892 | None:intergenic | 40.0% | |
| ! | GAAGGGTGCGAAAATATACA+TGG | - | chr1_2:69006885-69006904 | Msa0087980:intron | 40.0% |
| GGTGCGAAAATATACATGGT+AGG | - | chr1_2:69006889-69006908 | Msa0087980:intron | 40.0% | |
| ! | CCTCTTGTGAGTTGGAAACA+AGG | + | chr1_2:69003848-69003867 | None:intergenic | 45.0% |
| ! | CCTTGTTTCCAACTCACAAG+AGG | - | chr1_2:69003845-69003864 | Msa0087980:CDS | 45.0% |
| ACTATGACGCTGAACTCACT+TGG | - | chr1_2:69004157-69004176 | Msa0087980:intron | 45.0% | |
| CAAGTACCTCGTGAGGAATA+TGG | + | chr1_2:69004233-69004252 | None:intergenic | 45.0% | |
| ACAGCCTCAGATGAAAGTTC+AGG | + | chr1_2:69004354-69004373 | None:intergenic | 45.0% | |
| CAAGCAAGAACCAGATGGTA+CGG | - | chr1_2:69004497-69004516 | Msa0087980:intron | 45.0% | |
| TCTTGTACATCCGTACCATC+TGG | + | chr1_2:69004510-69004529 | None:intergenic | 45.0% | |
| GTCACAGATGTAGTTGAAGG+TGG | - | chr1_2:69004537-69004556 | Msa0087980:intron | 45.0% | |
| GGTGGAACATTTATTCGGGA+AGG | - | chr1_2:69004555-69004574 | Msa0087980:intron | 45.0% | |
| ! | ACTGTTGACCCACTTGCTTT+TGG | - | chr1_2:69004669-69004688 | Msa0087980:intron | 45.0% |
| TTTCTGTCTGTTGCGGCTAT+TGG | + | chr1_2:69004729-69004748 | None:intergenic | 45.0% | |
| CAGTCTATACAAAGTAGGGG+TGG | - | chr1_2:69005027-69005046 | Msa0087980:CDS | 45.0% | |
| TTGGATCCTACCACTCAAGT+TGG | - | chr1_2:69005112-69005131 | Msa0087980:CDS | 45.0% | |
| CTGAGATGACCAGTATGCAA+AGG | - | chr1_2:69005367-69005386 | Msa0087980:CDS | 45.0% | |
| AGAGTTGCTCCTTTGCATAC+TGG | + | chr1_2:69005379-69005398 | None:intergenic | 45.0% | |
| AAAGGAGCAACTCTGATGAG+AGG | - | chr1_2:69005385-69005404 | Msa0087980:CDS | 45.0% | |
| ATCTCAAGTCTCTGCACCAA+TGG | - | chr1_2:69005599-69005618 | Msa0087980:intron | 45.0% | |
| AGCCGTAAATGTGTCTCCAT+TGG | + | chr1_2:69005618-69005637 | None:intergenic | 45.0% | |
| !!! | TCCTTTTGGGAGTACTCTGA+CGG | + | chr1_2:69005695-69005714 | None:intergenic | 45.0% |
| ! | TGCACTTCACTCGTCCTTTT+GGG | + | chr1_2:69005708-69005727 | None:intergenic | 45.0% |
| ! | TTGCACTTCACTCGTCCTTT+TGG | + | chr1_2:69005709-69005728 | None:intergenic | 45.0% |
| ! | AAAGGACGATGAAGGTGCAT+AGG | - | chr1_2:69005769-69005788 | Msa0087980:intron | 45.0% |
| ! | ACGATGAAGGTGCATAGGAA+AGG | - | chr1_2:69005774-69005793 | Msa0087980:intron | 45.0% |
| ! | TCTGTCAGAGTATCCGCAAA+AGG | - | chr1_2:69005856-69005875 | Msa0087980:intron | 45.0% |
| ! | AGAGTATCCGCAAAAGGAAG+AGG | - | chr1_2:69005862-69005881 | Msa0087980:intron | 45.0% |
| ACACCAAAGTTCGACTTTGC+AGG | - | chr1_2:69005973-69005992 | Msa0087980:intron | 45.0% | |
| GTTCCTGCAAAGTCGAACTT+TGG | + | chr1_2:69005979-69005998 | None:intergenic | 45.0% | |
| AAGCAGTCTTGACATGAGCA+AGG | + | chr1_2:69006447-69006466 | None:intergenic | 45.0% | |
| TGGTTCCTCACCTCAAATTG+TGG | - | chr1_2:69006563-69006582 | Msa0087980:CDS | 45.0% | |
| ! | TCTGACCACAATTTGAGGTG+AGG | + | chr1_2:69006571-69006590 | None:intergenic | 45.0% |
| !! | TTGAAGCTGGAGCTTTGTTG+GGG | + | chr1_2:69006677-69006696 | None:intergenic | 45.0% |
| !! | CTTTGAAGCTGGAGCTTTGT+TGG | + | chr1_2:69006679-69006698 | None:intergenic | 45.0% |
| !! | GGTGGTTTTCTTTTGAAGGG+TGG | - | chr1_2:69006834-69006853 | Msa0087980:intron | 45.0% |
| !!! | TTATTTTATTTTTTTACTTT+TGG | - | chr1_2:69006606-69006625 | Msa0087980:CDS | 5.0% |
| ACGAGTCCATATTCCTCACG+AGG | - | chr1_2:69004224-69004243 | Msa0087980:CDS | 50.0% | |
| CTTGGCAAGCAAGAACCAGA+TGG | - | chr1_2:69004492-69004511 | Msa0087980:intron | 50.0% | |
| !! | GTTGCGGCTATTGGTTCCAA+AGG | + | chr1_2:69004720-69004739 | None:intergenic | 50.0% |
| ! | GGTGGGGTGAATTGAGGTTT+TGG | - | chr1_2:69005093-69005112 | Msa0087980:CDS | 50.0% |
| GGTGAACCAACTTGAGTGGT+AGG | + | chr1_2:69005121-69005140 | None:intergenic | 50.0% | |
| AACGGGTGAACCAACTTGAG+TGG | + | chr1_2:69005125-69005144 | None:intergenic | 50.0% | |
| ! | TAAGTGCAGCTCGGTGATTC+AGG | + | chr1_2:69005543-69005562 | None:intergenic | 50.0% |
| CTCTGACGGAAATCTTCACC+AGG | + | chr1_2:69005681-69005700 | None:intergenic | 50.0% | |
| ! | TCCGTCAGAGTACTCCCAAA+AGG | - | chr1_2:69005691-69005710 | Msa0087980:intron | 50.0% |
| ! | AATTGTGGCTGCTTTGCTGC+TGG | - | chr1_2:69006405-69006424 | Msa0087980:CDS | 50.0% |
| ATACAGTTCTGCAAGCTCGC+AGG | - | chr1_2:69006487-69006506 | Msa0087980:intron | 50.0% | |
| GCAGAATACGATGCAAGTGC+AGG | - | chr1_2:69006706-69006725 | Msa0087980:intron | 50.0% | |
| GACGCTGAACTCACTTGGCA+TGG | - | chr1_2:69004162-69004181 | Msa0087980:intron | 55.0% | |
| GCTGCTGGAGTCTACTGCAC+AGG | - | chr1_2:69006420-69006439 | Msa0087980:CDS | 60.0% | |
| !! | CTGCGTCGTCGCTTTGAAGC+TGG | + | chr1_2:69006690-69006709 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 69003819 | 69006989 | 69003819 | ID=Msa0087980;Name=Msa0087980 |
| chr1_2 | mRNA | 69003819 | 69006989 | 69003819 | ID=Msa0087980-mRNA-1;Parent=Msa0087980;Name=Msa0087980-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|0|0|1|1|1|7|0|563 |
| chr1_2 | exon | 69006942 | 69006989 | 69006942 | ID=Msa0087980-mRNA-1:exon:23708;Parent=Msa0087980-mRNA-1 |
| chr1_2 | exon | 69006563 | 69006723 | 69006563 | ID=Msa0087980-mRNA-1:exon:23707;Parent=Msa0087980-mRNA-1 |
| chr1_2 | exon | 69005990 | 69006482 | 69005990 | ID=Msa0087980-mRNA-1:exon:23706;Parent=Msa0087980-mRNA-1 |
| chr1_2 | exon | 69004919 | 69005490 | 69004919 | ID=Msa0087980-mRNA-1:exon:23705;Parent=Msa0087980-mRNA-1 |
| chr1_2 | exon | 69004224 | 69004404 | 69004224 | ID=Msa0087980-mRNA-1:exon:23704;Parent=Msa0087980-mRNA-1 |
| chr1_2 | exon | 69004041 | 69004139 | 69004041 | ID=Msa0087980-mRNA-1:exon:23703;Parent=Msa0087980-mRNA-1 |
| chr1_2 | exon | 69003819 | 69003956 | 69003819 | ID=Msa0087980-mRNA-1:exon:23702;Parent=Msa0087980-mRNA-1 |
| chr1_2 | CDS | 69006942 | 69006989 | 69006942 | ID=Msa0087980-mRNA-1:cds;Parent=Msa0087980-mRNA-1 |
| chr1_2 | CDS | 69006563 | 69006723 | 69006563 | ID=Msa0087980-mRNA-1:cds;Parent=Msa0087980-mRNA-1 |
| chr1_2 | CDS | 69005990 | 69006482 | 69005990 | ID=Msa0087980-mRNA-1:cds;Parent=Msa0087980-mRNA-1 |
| chr1_2 | CDS | 69004919 | 69005490 | 69004919 | ID=Msa0087980-mRNA-1:cds;Parent=Msa0087980-mRNA-1 |
| chr1_2 | CDS | 69004224 | 69004404 | 69004224 | ID=Msa0087980-mRNA-1:cds;Parent=Msa0087980-mRNA-1 |
| chr1_2 | CDS | 69004041 | 69004139 | 69004041 | ID=Msa0087980-mRNA-1:cds;Parent=Msa0087980-mRNA-1 |
| chr1_2 | CDS | 69003819 | 69003956 | 69003819 | ID=Msa0087980-mRNA-1:cds;Parent=Msa0087980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
