AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0088050

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0088050 MtrunA17_Chr1g0205131 97.007 401 6 4 1 399 1 397 0.0 796
Msa0088050 MtrunA17_Chr6g0456881 41.250 320 98 13 110 393 126 391 2.87e-47 166
Msa0088050 MtrunA17_Chr7g0220931 36.164 365 155 12 41 393 57 355 1.83e-38 142
Msa0088050 MtrunA17_Chr4g0062691 40.625 160 66 4 96 238 120 267 1.11e-20 92.8
Msa0088050 MtrunA17_Chr8g0376571 35.404 161 69 3 109 236 60 218 2.07e-17 84.0
Msa0088050 MtrunA17_Chr4g0040921 55.738 61 27 0 109 169 21 81 4.56e-17 81.6
Msa0088050 MtrunA17_Chr8g0360441 55.738 61 27 0 109 169 53 113 1.17e-16 81.3
Msa0088050 MtrunA17_Chr2g0316391 57.377 61 26 0 109 169 19 79 1.56e-16 79.7
Msa0088050 MtrunA17_Chr2g0325171 53.333 60 28 0 109 168 23 82 1.85e-16 79.7
Msa0088050 MtrunA17_Chr4g0061561 37.037 108 67 1 109 216 56 162 1.95e-13 70.5
Msa0088050 MtrunA17_Chr6g0454781 51.667 60 29 0 109 168 48 107 2.39e-13 70.5
Msa0088050 MtrunA17_Chr7g0219461 44.444 81 45 0 109 189 56 136 1.35e-12 68.6
Msa0088050 MtrunA17_Chr3g0086961 48.333 60 31 0 109 168 56 115 1.48e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0088050 AT1G67260.2 42.690 171 67 5 110 253 87 253 6.96e-27 110
Msa0088050 AT1G67260.3 42.690 171 67 5 110 253 87 253 6.96e-27 110
Msa0088050 AT1G67260.1 42.690 171 67 5 110 253 87 253 7.56e-27 110
Msa0088050 AT1G68800.2 68.182 66 21 0 110 175 112 177 3.02e-21 94.7
Msa0088050 AT1G68800.1 68.182 66 21 0 110 175 112 177 3.20e-21 94.4
Msa0088050 AT3G18550.2 30.043 233 104 8 61 235 66 297 1.10e-18 87.8
Msa0088050 AT3G18550.3 31.034 232 101 8 61 234 66 296 1.90e-18 87.0
Msa0088050 AT3G18550.1 29.958 237 103 9 61 235 66 301 2.71e-18 86.7
Msa0088050 AT3G18550.4 29.958 237 103 9 61 235 66 301 2.71e-18 86.7
Msa0088050 AT4G18390.1 39.850 133 68 2 109 236 41 166 3.06e-18 85.9
Msa0088050 AT4G18390.2 39.850 133 68 2 109 236 41 166 3.06e-18 85.9
Msa0088050 AT1G30210.2 42.188 128 57 3 109 236 49 159 1.76e-17 83.2
Msa0088050 AT1G30210.1 42.188 128 57 3 109 236 49 159 1.76e-17 83.2
Msa0088050 AT1G53230.1 56.452 62 27 0 109 170 48 109 5.12e-17 82.4
Msa0088050 AT1G53230.2 56.452 62 27 0 109 170 48 109 5.12e-17 82.4
Msa0088050 AT3G15030.2 57.377 61 26 0 109 169 44 104 8.53e-17 82.0
Msa0088050 AT3G15030.4 57.377 61 26 0 109 169 44 104 8.53e-17 82.0
Msa0088050 AT3G15030.3 57.377 61 26 0 109 169 44 104 8.53e-17 82.0
Msa0088050 AT3G15030.1 57.377 61 26 0 109 169 44 104 8.53e-17 82.0
Msa0088050 AT2G31070.1 56.667 60 26 0 109 168 28 87 2.58e-16 80.1
Msa0088050 AT3G02150.1 51.667 60 29 0 109 168 73 132 1.71e-12 67.8
Msa0088050 AT3G02150.2 51.667 60 29 0 109 168 73 132 2.25e-12 68.2
Msa0088050 AT5G60970.1 46.667 60 32 0 109 168 62 121 1.95e-11 65.5

Find 73 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTCTGTCACAACATAATT+TGG 0.114937 1_2:+69109824 None:intergenic
GATGAAGAAGGGAAATTATT+AGG 0.158390 1_2:+69110088 None:intergenic
TCCCTTGTTCAACTCCAAAT+TGG 0.198049 1_2:-69108992 Msa0088050:CDS
CCTTAGGGATAGTAGGAATT+AGG 0.215420 1_2:+69109063 None:intergenic
AGAAAAGAAAGGGTACTATT+AGG 0.235751 1_2:+69110049 None:intergenic
TGGAGTTGAACAAGGGAATA+AGG 0.272402 1_2:+69108998 None:intergenic
TTGGAGCTAGTCTCCCAATT+TGG 0.297661 1_2:+69108978 None:intergenic
AAGAAGAGTAGTATTGTTAT+TGG 0.300314 1_2:+69109997 None:intergenic
TTGAAACTTGGTAATTCCTT+AGG 0.318513 1_2:+69109047 None:intergenic
TCATAATCATCATAACCTAT+TGG 0.320855 1_2:-69109192 Msa0088050:CDS
GGATAGTAGGAATTAGGTTT+TGG 0.326225 1_2:+69109069 None:intergenic
AAACAACCAGCAGCAGTTAT+AGG 0.340022 1_2:-69109800 Msa0088050:CDS
GAATGCAACAAGAAGAAATT+AGG 0.347577 1_2:-69109370 Msa0088050:CDS
AGGAATCCATTATGATTAGA+AGG 0.357973 1_2:-69109127 Msa0088050:CDS
GAAAAGAAAGGGTACTATTA+GGG 0.366150 1_2:+69110050 None:intergenic
CAAGATAATGGCTACAACTT+TGG 0.372622 1_2:-69109869 Msa0088050:CDS
AGAAGAGTAGTATTGTTATT+GGG 0.374456 1_2:+69109998 None:intergenic
ATGAAGAAGGGAAATTATTA+GGG 0.385216 1_2:+69110089 None:intergenic
CCCTTGTTCAACTCCAAATT+GGG 0.387307 1_2:-69108991 Msa0088050:CDS
CATGTTCCTTCTAATCATAA+TGG 0.388796 1_2:+69109121 None:intergenic
GCAATGTTTGAACAAGATAA+TGG 0.390494 1_2:-69109881 Msa0088050:CDS
TAGGTATTTCACTATCCAAT+AGG 0.395659 1_2:+69109177 None:intergenic
TTTCCTCCTATAACTGCTGC+TGG 0.420270 1_2:+69109794 None:intergenic
AAAAGAAGGGTTACTACTAT+AGG 0.421997 1_2:+69109214 None:intergenic
GGTAATTCCTTAGGGATAGT+AGG 0.423994 1_2:+69109056 None:intergenic
GTTGAATCTGCACCAGGTCC+AGG 0.426040 1_2:+69109344 None:intergenic
AGCCACTCAAGTGTGTTACT+TGG 0.429932 1_2:+69109653 None:intergenic
CAATCTGCAAAATTAGCATC+AGG 0.430784 1_2:+69109914 None:intergenic
TTATAGGAGGAAAGAAAGAT+AGG 0.430839 1_2:-69109784 Msa0088050:CDS
TTAATATTGTGGTTGAAACT+TGG 0.430928 1_2:+69109035 None:intergenic
CTAAAGGGAGAAAATTGAAA+TGG 0.439828 1_2:-69109484 Msa0088050:CDS
ATGGTAGTTGTTCTTCTAAA+GGG 0.441018 1_2:-69109499 Msa0088050:CDS
GAAGAAGAAGATGATGAAGA+AGG 0.449349 1_2:+69110076 None:intergenic
AATCATTATTATTAATATTG+TGG 0.455465 1_2:+69109024 None:intergenic
TGAAACTTGGTAATTCCTTA+GGG 0.456765 1_2:+69109048 None:intergenic
TCCGGCGGTGGTGGCGGCGA+TGG 0.458548 1_2:-69109518 Msa0088050:CDS
GATGGTAGTTGTTCTTCTAA+AGG 0.462971 1_2:-69109500 Msa0088050:CDS
TTATGATGATTATGAAAAGA+AGG 0.467263 1_2:+69109200 None:intergenic
GTCACAACATAATTTGGAAT+CGG 0.469967 1_2:+69109830 None:intergenic
AAGAAGAAGATGATGAAGAA+GGG 0.472483 1_2:+69110077 None:intergenic
AGTGGCTATTCCACAAAAGT+TGG 0.483262 1_2:+69108959 None:intergenic
TCAGTTTCAGTACTATCAAC+AGG 0.489731 1_2:+69109275 None:intergenic
ACCATCGCCGCCACCACCGC+CGG 0.517778 1_2:+69109517 None:intergenic
ATTGTCAATGAGAAAAGAAA+GGG 0.521480 1_2:+69110039 None:intergenic
TATGATGATTATGAAAAGAA+GGG 0.526879 1_2:+69109201 None:intergenic
GATTGTCAATGAGAAAAGAA+AGG 0.527029 1_2:+69110038 None:intergenic
AGTGAAATACCTAGAGATCA+TGG 0.535750 1_2:-69109167 Msa0088050:CDS
TTAAATCCACCATGATCTCT+AGG 0.537094 1_2:+69109158 None:intergenic
GTATTTGTTGAATCTGCACC+AGG 0.542255 1_2:+69109338 None:intergenic
TGGTGGATTTAATGTGATTG+AGG 0.542326 1_2:-69109147 Msa0088050:CDS
CCTAATTCCTACTATCCCTA+AGG 0.544884 1_2:-69109063 Msa0088050:CDS
TCCCAATTTGGAGTTGAACA+AGG 0.545085 1_2:+69108990 None:intergenic
CAAGAGCAAGAGCTAGAGAA+AGG 0.553192 1_2:-69109421 Msa0088050:CDS
GCAAAATTAGCATCAGGGAA+TGG 0.555133 1_2:+69109920 None:intergenic
CAGTAAGATTCACACATCAC+AGG 0.558791 1_2:-69109759 Msa0088050:CDS
GAAATTAGGTACCCTGGACC+TGG 0.562470 1_2:-69109356 Msa0088050:CDS
TTGAATCTGCACCAGGTCCA+GGG 0.571969 1_2:+69109345 None:intergenic
CTACATGCTTCTTGAATCCG+TGG 0.574833 1_2:-69108926 Msa0088050:CDS
CAAGAAGAAATTAGGTACCC+TGG 0.600461 1_2:-69109362 Msa0088050:CDS
AAACTGAGGCTTATGCAAGA+TGG 0.603501 1_2:-69109259 Msa0088050:CDS
TGTTGATAGTACTGAAACTG+AGG 0.605008 1_2:-69109273 Msa0088050:CDS
CCCAATTTGGAGTTGAACAA+GGG 0.612112 1_2:+69108991 None:intergenic
CACAGGGTTTGAGAGACAGA+AGG 0.612414 1_2:-69109742 Msa0088050:CDS
ACTTAGTTAATTACTTACCA+CGG 0.614778 1_2:+69108909 None:intergenic
CAACCAGCAGCAGTTATAGG+AGG 0.626000 1_2:-69109797 Msa0088050:CDS
AATCTGCAAAATTAGCATCA+GGG 0.626917 1_2:+69109915 None:intergenic
TGTTACAAGATGTGTAGCAG+TGG 0.627912 1_2:-69109395 Msa0088050:CDS
ACAGGGTTTGAGAGACAGAA+GGG 0.629239 1_2:-69109741 Msa0088050:CDS
GCATGTAGATAGATTCATAG+TGG 0.634816 1_2:+69108941 None:intergenic
AGTAAGATTCACACATCACA+GGG 0.651645 1_2:-69109758 Msa0088050:CDS
TGATGTGTTGATGTAGTGAA+AGG 0.657369 1_2:+69109953 None:intergenic
AACCAAGTAACACACTTGAG+TGG 0.665918 1_2:-69109655 Msa0088050:CDS
GAAATACCTAGAGATCATGG+TGG 0.750657 1_2:-69109164 Msa0088050:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCATTATTATTAATATTG+TGG + chr1_2:69110002-69110021 None:intergenic 10.0%
!! AATCATTATTATTAATATTG+TGG + chr1_2:69110002-69110021 None:intergenic 10.0%
!!! TGCTATTTGAATCAAAAAAT+GGG + chr1_2:69109474-69109493 None:intergenic 20.0%
!!! TTGCTATTTGAATCAAAAAA+TGG + chr1_2:69109475-69109494 None:intergenic 20.0%
!! TATGATGATTATGAAAAGAA+GGG + chr1_2:69109825-69109844 None:intergenic 20.0%
!! TTATGATGATTATGAAAAGA+AGG + chr1_2:69109826-69109845 None:intergenic 20.0%
!!! TGCTATTTGAATCAAAAAAT+GGG + chr1_2:69109474-69109493 None:intergenic 20.0%
!!! TTGCTATTTGAATCAAAAAA+TGG + chr1_2:69109475-69109494 None:intergenic 20.0%
!! TATGATGATTATGAAAAGAA+GGG + chr1_2:69109825-69109844 None:intergenic 20.0%
!! TTATGATGATTATGAAAAGA+AGG + chr1_2:69109826-69109845 None:intergenic 20.0%
! ATGAAGAAGGGAAATTATTA+GGG + chr1_2:69108937-69108956 None:intergenic 25.0%
! ATTGTCAATGAGAAAAGAAA+GGG + chr1_2:69108987-69109006 None:intergenic 25.0%
!! TTGGGAAAATCATTATTTTC+AGG + chr1_2:69109010-69109029 None:intergenic 25.0%
!! AGAAGAGTAGTATTGTTATT+GGG + chr1_2:69109028-69109047 None:intergenic 25.0%
! AAGAAGAGTAGTATTGTTAT+TGG + chr1_2:69109029-69109048 None:intergenic 25.0%
!! AATAGCAACAAATCATTTTC+CGG - chr1_2:69109487-69109506 Msa0088050:CDS 25.0%
! TCATAATCATCATAACCTAT+TGG - chr1_2:69109831-69109850 Msa0088050:CDS 25.0%
! TTAATATTGTGGTTGAAACT+TGG + chr1_2:69109991-69110010 None:intergenic 25.0%
! ATGAAGAAGGGAAATTATTA+GGG + chr1_2:69108937-69108956 None:intergenic 25.0%
! ATTGTCAATGAGAAAAGAAA+GGG + chr1_2:69108987-69109006 None:intergenic 25.0%
!! TTGGGAAAATCATTATTTTC+AGG + chr1_2:69109010-69109029 None:intergenic 25.0%
!! AGAAGAGTAGTATTGTTATT+GGG + chr1_2:69109028-69109047 None:intergenic 25.0%
! AAGAAGAGTAGTATTGTTAT+TGG + chr1_2:69109029-69109048 None:intergenic 25.0%
!! AATAGCAACAAATCATTTTC+CGG - chr1_2:69109487-69109506 Msa0088050:CDS 25.0%
! TCATAATCATCATAACCTAT+TGG - chr1_2:69109831-69109850 Msa0088050:CDS 25.0%
! TTAATATTGTGGTTGAAACT+TGG + chr1_2:69109991-69110010 None:intergenic 25.0%
GATGAAGAAGGGAAATTATT+AGG + chr1_2:69108938-69108957 None:intergenic 30.0%
AAGAAGAAGATGATGAAGAA+GGG + chr1_2:69108949-69108968 None:intergenic 30.0%
!! GAAAAGAAAGGGTACTATTA+GGG + chr1_2:69108976-69108995 None:intergenic 30.0%
!! AGAAAAGAAAGGGTACTATT+AGG + chr1_2:69108977-69108996 None:intergenic 30.0%
GATTGTCAATGAGAAAAGAA+AGG + chr1_2:69108988-69109007 None:intergenic 30.0%
AATCTGCAAAATTAGCATCA+GGG + chr1_2:69109111-69109130 None:intergenic 30.0%
GCAATGTTTGAACAAGATAA+TGG - chr1_2:69109142-69109161 Msa0088050:CDS 30.0%
! GTCACAACATAATTTGGAAT+CGG + chr1_2:69109196-69109215 None:intergenic 30.0%
TTATAGGAGGAAAGAAAGAT+AGG - chr1_2:69109239-69109258 Msa0088050:CDS 30.0%
ATGGTAGTTGTTCTTCTAAA+GGG - chr1_2:69109524-69109543 Msa0088050:CDS 30.0%
CTAAAGGGAGAAAATTGAAA+TGG - chr1_2:69109539-69109558 Msa0088050:CDS 30.0%
GAATGCAACAAGAAGAAATT+AGG - chr1_2:69109653-69109672 Msa0088050:CDS 30.0%
AAAAGAAGGGTTACTACTAT+AGG + chr1_2:69109812-69109831 None:intergenic 30.0%
TAGGTATTTCACTATCCAAT+AGG + chr1_2:69109849-69109868 None:intergenic 30.0%
AGGAATCCATTATGATTAGA+AGG - chr1_2:69109896-69109915 Msa0088050:CDS 30.0%
CATGTTCCTTCTAATCATAA+TGG + chr1_2:69109905-69109924 None:intergenic 30.0%
! TGAAACTTGGTAATTCCTTA+GGG + chr1_2:69109978-69109997 None:intergenic 30.0%
! TTGAAACTTGGTAATTCCTT+AGG + chr1_2:69109979-69109998 None:intergenic 30.0%
GATGAAGAAGGGAAATTATT+AGG + chr1_2:69108938-69108957 None:intergenic 30.0%
AAGAAGAAGATGATGAAGAA+GGG + chr1_2:69108949-69108968 None:intergenic 30.0%
!! GAAAAGAAAGGGTACTATTA+GGG + chr1_2:69108976-69108995 None:intergenic 30.0%
!! AGAAAAGAAAGGGTACTATT+AGG + chr1_2:69108977-69108996 None:intergenic 30.0%
GATTGTCAATGAGAAAAGAA+AGG + chr1_2:69108988-69109007 None:intergenic 30.0%
AATCTGCAAAATTAGCATCA+GGG + chr1_2:69109111-69109130 None:intergenic 30.0%
GCAATGTTTGAACAAGATAA+TGG - chr1_2:69109142-69109161 Msa0088050:CDS 30.0%
! GTCACAACATAATTTGGAAT+CGG + chr1_2:69109196-69109215 None:intergenic 30.0%
TTATAGGAGGAAAGAAAGAT+AGG - chr1_2:69109239-69109258 Msa0088050:CDS 30.0%
ATGGTAGTTGTTCTTCTAAA+GGG - chr1_2:69109524-69109543 Msa0088050:CDS 30.0%
CTAAAGGGAGAAAATTGAAA+TGG - chr1_2:69109539-69109558 Msa0088050:CDS 30.0%
GAATGCAACAAGAAGAAATT+AGG - chr1_2:69109653-69109672 Msa0088050:CDS 30.0%
AAAAGAAGGGTTACTACTAT+AGG + chr1_2:69109812-69109831 None:intergenic 30.0%
TAGGTATTTCACTATCCAAT+AGG + chr1_2:69109849-69109868 None:intergenic 30.0%
AGGAATCCATTATGATTAGA+AGG - chr1_2:69109896-69109915 Msa0088050:CDS 30.0%
CATGTTCCTTCTAATCATAA+TGG + chr1_2:69109905-69109924 None:intergenic 30.0%
! TGAAACTTGGTAATTCCTTA+GGG + chr1_2:69109978-69109997 None:intergenic 30.0%
! TTGAAACTTGGTAATTCCTT+AGG + chr1_2:69109979-69109998 None:intergenic 30.0%
GAAGAAGAAGATGATGAAGA+AGG + chr1_2:69108950-69108969 None:intergenic 35.0%
! TGATGTGTTGATGTAGTGAA+AGG + chr1_2:69109073-69109092 None:intergenic 35.0%
CAATCTGCAAAATTAGCATC+AGG + chr1_2:69109112-69109131 None:intergenic 35.0%
! CAAGATAATGGCTACAACTT+TGG - chr1_2:69109154-69109173 Msa0088050:CDS 35.0%
TGCTCTGTCACAACATAATT+TGG + chr1_2:69109202-69109221 None:intergenic 35.0%
AGTAAGATTCACACATCACA+GGG - chr1_2:69109265-69109284 Msa0088050:CDS 35.0%
GATGGTAGTTGTTCTTCTAA+AGG - chr1_2:69109523-69109542 Msa0088050:CDS 35.0%
TCAGTTTCAGTACTATCAAC+AGG + chr1_2:69109751-69109770 None:intergenic 35.0%
!! TGTTGATAGTACTGAAACTG+AGG - chr1_2:69109750-69109769 Msa0088050:CDS 35.0%
AGTGAAATACCTAGAGATCA+TGG - chr1_2:69109856-69109875 Msa0088050:CDS 35.0%
TTAAATCCACCATGATCTCT+AGG + chr1_2:69109868-69109887 None:intergenic 35.0%
!! TGGTGGATTTAATGTGATTG+AGG - chr1_2:69109876-69109895 Msa0088050:CDS 35.0%
! GGATAGTAGGAATTAGGTTT+TGG + chr1_2:69109957-69109976 None:intergenic 35.0%
GCATGTAGATAGATTCATAG+TGG + chr1_2:69110085-69110104 None:intergenic 35.0%
GAAGAAGAAGATGATGAAGA+AGG + chr1_2:69108950-69108969 None:intergenic 35.0%
! TGATGTGTTGATGTAGTGAA+AGG + chr1_2:69109073-69109092 None:intergenic 35.0%
CAATCTGCAAAATTAGCATC+AGG + chr1_2:69109112-69109131 None:intergenic 35.0%
! CAAGATAATGGCTACAACTT+TGG - chr1_2:69109154-69109173 Msa0088050:CDS 35.0%
TGCTCTGTCACAACATAATT+TGG + chr1_2:69109202-69109221 None:intergenic 35.0%
AGTAAGATTCACACATCACA+GGG - chr1_2:69109265-69109284 Msa0088050:CDS 35.0%
GATGGTAGTTGTTCTTCTAA+AGG - chr1_2:69109523-69109542 Msa0088050:CDS 35.0%
TCAGTTTCAGTACTATCAAC+AGG + chr1_2:69109751-69109770 None:intergenic 35.0%
!! TGTTGATAGTACTGAAACTG+AGG - chr1_2:69109750-69109769 Msa0088050:CDS 35.0%
AGTGAAATACCTAGAGATCA+TGG - chr1_2:69109856-69109875 Msa0088050:CDS 35.0%
TTAAATCCACCATGATCTCT+AGG + chr1_2:69109868-69109887 None:intergenic 35.0%
!! TGGTGGATTTAATGTGATTG+AGG - chr1_2:69109876-69109895 Msa0088050:CDS 35.0%
! GGATAGTAGGAATTAGGTTT+TGG + chr1_2:69109957-69109976 None:intergenic 35.0%
GCATGTAGATAGATTCATAG+TGG + chr1_2:69110085-69110104 None:intergenic 35.0%
GCAAAATTAGCATCAGGGAA+TGG + chr1_2:69109106-69109125 None:intergenic 40.0%
AAACAACCAGCAGCAGTTAT+AGG - chr1_2:69109223-69109242 Msa0088050:CDS 40.0%
CAGTAAGATTCACACATCAC+AGG - chr1_2:69109264-69109283 Msa0088050:CDS 40.0%
AACCAAGTAACACACTTGAG+TGG - chr1_2:69109368-69109387 Msa0088050:CDS 40.0%
! AGCAACAAATCATTTTCCGG+CGG - chr1_2:69109490-69109509 Msa0088050:CDS 40.0%
TGTTACAAGATGTGTAGCAG+TGG - chr1_2:69109628-69109647 Msa0088050:CDS 40.0%
CAAGAAGAAATTAGGTACCC+TGG - chr1_2:69109661-69109680 Msa0088050:CDS 40.0%
! GTATTTGTTGAATCTGCACC+AGG + chr1_2:69109688-69109707 None:intergenic 40.0%
AAACTGAGGCTTATGCAAGA+TGG - chr1_2:69109764-69109783 Msa0088050:CDS 40.0%
GAAATACCTAGAGATCATGG+TGG - chr1_2:69109859-69109878 Msa0088050:CDS 40.0%
CCTTAGGGATAGTAGGAATT+AGG + chr1_2:69109963-69109982 None:intergenic 40.0%
CCTAATTCCTACTATCCCTA+AGG - chr1_2:69109960-69109979 Msa0088050:CDS 40.0%
GGTAATTCCTTAGGGATAGT+AGG + chr1_2:69109970-69109989 None:intergenic 40.0%
TGGAGTTGAACAAGGGAATA+AGG + chr1_2:69110028-69110047 None:intergenic 40.0%
TCCCTTGTTCAACTCCAAAT+TGG - chr1_2:69110031-69110050 Msa0088050:CDS 40.0%
! CCCAATTTGGAGTTGAACAA+GGG + chr1_2:69110035-69110054 None:intergenic 40.0%
CCCTTGTTCAACTCCAAATT+GGG - chr1_2:69110032-69110051 Msa0088050:CDS 40.0%
! TCCCAATTTGGAGTTGAACA+AGG + chr1_2:69110036-69110055 None:intergenic 40.0%
AGTGGCTATTCCACAAAAGT+TGG + chr1_2:69110067-69110086 None:intergenic 40.0%
GCAAAATTAGCATCAGGGAA+TGG + chr1_2:69109106-69109125 None:intergenic 40.0%
AAACAACCAGCAGCAGTTAT+AGG - chr1_2:69109223-69109242 Msa0088050:CDS 40.0%
CAGTAAGATTCACACATCAC+AGG - chr1_2:69109264-69109283 Msa0088050:CDS 40.0%
AACCAAGTAACACACTTGAG+TGG - chr1_2:69109368-69109387 Msa0088050:CDS 40.0%
! AGCAACAAATCATTTTCCGG+CGG - chr1_2:69109490-69109509 Msa0088050:CDS 40.0%
TGTTACAAGATGTGTAGCAG+TGG - chr1_2:69109628-69109647 Msa0088050:CDS 40.0%
CAAGAAGAAATTAGGTACCC+TGG - chr1_2:69109661-69109680 Msa0088050:CDS 40.0%
! GTATTTGTTGAATCTGCACC+AGG + chr1_2:69109688-69109707 None:intergenic 40.0%
AAACTGAGGCTTATGCAAGA+TGG - chr1_2:69109764-69109783 Msa0088050:CDS 40.0%
GAAATACCTAGAGATCATGG+TGG - chr1_2:69109859-69109878 Msa0088050:CDS 40.0%
CCTTAGGGATAGTAGGAATT+AGG + chr1_2:69109963-69109982 None:intergenic 40.0%
CCTAATTCCTACTATCCCTA+AGG - chr1_2:69109960-69109979 Msa0088050:CDS 40.0%
GGTAATTCCTTAGGGATAGT+AGG + chr1_2:69109970-69109989 None:intergenic 40.0%
TGGAGTTGAACAAGGGAATA+AGG + chr1_2:69110028-69110047 None:intergenic 40.0%
TCCCTTGTTCAACTCCAAAT+TGG - chr1_2:69110031-69110050 Msa0088050:CDS 40.0%
! CCCAATTTGGAGTTGAACAA+GGG + chr1_2:69110035-69110054 None:intergenic 40.0%
CCCTTGTTCAACTCCAAATT+GGG - chr1_2:69110032-69110051 Msa0088050:CDS 40.0%
! TCCCAATTTGGAGTTGAACA+AGG + chr1_2:69110036-69110055 None:intergenic 40.0%
AGTGGCTATTCCACAAAAGT+TGG + chr1_2:69110067-69110086 None:intergenic 40.0%
TTTCCTCCTATAACTGCTGC+TGG + chr1_2:69109232-69109251 None:intergenic 45.0%
ACAGGGTTTGAGAGACAGAA+GGG - chr1_2:69109282-69109301 Msa0088050:CDS 45.0%
! AGCCACTCAAGTGTGTTACT+TGG + chr1_2:69109373-69109392 None:intergenic 45.0%
! AACAAATCATTTTCCGGCGG+TGG - chr1_2:69109493-69109512 Msa0088050:CDS 45.0%
CAAGAGCAAGAGCTAGAGAA+AGG - chr1_2:69109602-69109621 Msa0088050:CDS 45.0%
! TTGGAGCTAGTCTCCCAATT+TGG + chr1_2:69110048-69110067 None:intergenic 45.0%
!! GAGACTAGCTCCAACTTTTG+TGG - chr1_2:69110054-69110073 Msa0088050:CDS 45.0%
CTACATGCTTCTTGAATCCG+TGG - chr1_2:69110097-69110116 Msa0088050:CDS 45.0%
TTTCCTCCTATAACTGCTGC+TGG + chr1_2:69109232-69109251 None:intergenic 45.0%
ACAGGGTTTGAGAGACAGAA+GGG - chr1_2:69109282-69109301 Msa0088050:CDS 45.0%
! AGCCACTCAAGTGTGTTACT+TGG + chr1_2:69109373-69109392 None:intergenic 45.0%
! AACAAATCATTTTCCGGCGG+TGG - chr1_2:69109493-69109512 Msa0088050:CDS 45.0%
CAAGAGCAAGAGCTAGAGAA+AGG - chr1_2:69109602-69109621 Msa0088050:CDS 45.0%
! TTGGAGCTAGTCTCCCAATT+TGG + chr1_2:69110048-69110067 None:intergenic 45.0%
!! GAGACTAGCTCCAACTTTTG+TGG - chr1_2:69110054-69110073 Msa0088050:CDS 45.0%
CTACATGCTTCTTGAATCCG+TGG - chr1_2:69110097-69110116 Msa0088050:CDS 45.0%
CAACCAGCAGCAGTTATAGG+AGG - chr1_2:69109226-69109245 Msa0088050:CDS 50.0%
CACAGGGTTTGAGAGACAGA+AGG - chr1_2:69109281-69109300 Msa0088050:CDS 50.0%
! AAATCATTTTCCGGCGGTGG+TGG - chr1_2:69109496-69109515 Msa0088050:CDS 50.0%
GAAATTAGGTACCCTGGACC+TGG - chr1_2:69109667-69109686 Msa0088050:CDS 50.0%
TTGAATCTGCACCAGGTCCA+GGG + chr1_2:69109681-69109700 None:intergenic 50.0%
CAACCAGCAGCAGTTATAGG+AGG - chr1_2:69109226-69109245 Msa0088050:CDS 50.0%
CACAGGGTTTGAGAGACAGA+AGG - chr1_2:69109281-69109300 Msa0088050:CDS 50.0%
! AAATCATTTTCCGGCGGTGG+TGG - chr1_2:69109496-69109515 Msa0088050:CDS 50.0%
GAAATTAGGTACCCTGGACC+TGG - chr1_2:69109667-69109686 Msa0088050:CDS 50.0%
TTGAATCTGCACCAGGTCCA+GGG + chr1_2:69109681-69109700 None:intergenic 50.0%
GTTGAATCTGCACCAGGTCC+AGG + chr1_2:69109682-69109701 None:intergenic 55.0%
GTTGAATCTGCACCAGGTCC+AGG + chr1_2:69109682-69109701 None:intergenic 55.0%
!! TCATTTTCCGGCGGTGGTGG+CGG - chr1_2:69109499-69109518 Msa0088050:CDS 60.0%
!! TCATTTTCCGGCGGTGGTGG+CGG - chr1_2:69109499-69109518 Msa0088050:CDS 60.0%
ACCATCGCCGCCACCACCGC+CGG + chr1_2:69109509-69109528 None:intergenic 75.0%
ACCATCGCCGCCACCACCGC+CGG + chr1_2:69109509-69109528 None:intergenic 75.0%
!!! TCCGGCGGTGGTGGCGGCGA+TGG - chr1_2:69109505-69109524 Msa0088050:CDS 80.0%
!!! TCCGGCGGTGGTGGCGGCGA+TGG - chr1_2:69109505-69109524 Msa0088050:CDS 80.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 69108923 69110122 69108923 ID=Msa0088050;Name=Msa0088050
chr1_2 mRNA 69108923 69110122 69108923 ID=Msa0088050-mRNA-1;Parent=Msa0088050;Name=Msa0088050-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|-1|0|1|-1|1|1|0|399
chr1_2 exon 69108923 69110122 69108923 ID=Msa0088050-mRNA-1:exon:23735;Parent=Msa0088050-mRNA-1
chr1_2 CDS 69108923 69110122 69108923 ID=Msa0088050-mRNA-1:cds;Parent=Msa0088050-mRNA-1
Gene Sequence

>Msa0088050

ATGTTCTCTTTCCCTAATAATTTCCCTTCTTCATCATCTTCTTCTTCTTACCCTAATAGTACCCTTTCTTTTCTCATTGACAATCCTGAAAATAATGATTTTCCCAATAACAATACTACTCTTCTTGATGACTCACTACTTTCTATTCCTTTCACTACATCAACACATCATGATGTTGTTCCATTCCCTGATGCTAATTTTGCAGATTGTAACAACACTGCAATGTTTGAACAAGATAATGGCTACAACTTTGGTGTTAATAGTAGTTTTCCGATTCCAAATTATGTTGTGACAGAGCAGAAACAACCAGCAGCAGTTATAGGAGGAAAGAAAGATAGGCACAGTAAGATTCACACATCACAGGGTTTGAGAGACAGAAGGGTAAGATTGTCAAGTGAAATAGCAAGAAAGTTCTTTGATCTTCAAGATATGTTAGAGTTTGACAAACCAAGTAACACACTTGAGTGGCTTTTCACTAAATCTGACACTGCAATCAAAGAACTAGCTAGAACTAAAAACGCTGCTTGTTACAACAACAACGACAACAGCCCATTTTTTGATTCAAATAGCAACAAATCATTTTCCGGCGGTGGTGGCGGCGATGGTAGTTGTTCTTCTAAAGGGAGAAAATTGAAATGGACACAGAAAGAAGAAACAAAAAAAGAGTCAAGAGAAAGAGCAAGAGCAAGAGCTAGAGAAAGGACTTGTTACAAGATGTGTAGCAGTGGAAGAATGCAACAAGAAGAAATTAGGTACCCTGGACCTGGTGCAGATTCAACAAATACTCAACAAATGCTGCAACAATTGATGTCATCTTCAACATCACCTGTTGATAGTACTGAAACTGAGGCTTATGCAAGATGGCGTCAGCTTCTTCAACTTCAGACCTATAGTAGTAACCCTTCTTTTCATAATCATCATAACCTATTGGATAGTGAAATACCTAGAGATCATGGTGGATTTAATGTGATTGAGGAATCCATTATGATTAGAAGGAACATGATGTCTGCTACTTCTTCTCAATATCATCACCAAAACCTAATTCCTACTATCCCTAAGGAATTACCAAGTTTCAACCACAATATTAATAATAATGATTACTCCTTATTCCCTTGTTCAACTCCAAATTGGGAGACTAGCTCCAACTTTTGTGGAATAGCCACTATGAATCTATCTACATGCTTCTTGAATCCGTGGTAA
Protein sequence

>Msa0088050

MFSFPNNFPSSSSSSSYPNSTLSFLIDNPENNDFPNNNTTLLDDSLLSIPFTTSTHHDVVPFPDANFADCNNTAMFEQDNGYNFGVNSSFPIPNYVVTEQKQPAAVIGGKKDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTKSDTAIKELARTKNAACYNNNDNSPFFDSNSNKSFSGGGGGDGSCSSKGRKLKWTQKEETKKESRERARARARERTCYKMCSSGRMQQEEIRYPGPGADSTNTQQMLQQLMSSSTSPVDSTETEAYARWRQLLQLQTYSSNPSFHNHHNLLDSEIPRDHGGFNVIEESIMIRRNMMSATSSQYHHQNLIPTIPKELPSFNHNINNNDYSLFPCSTPNWETSSNFCGIATMNLSTCFLNPW*