AlfalfaGEDB | Msa0088700

M. sativa cultivar zhongmu-4 / Msa0088700

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0088700	XP_019452503.1	63.801	442	96	8	2	383	127	564	1.62e-174	512

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0088700	sp\|Q9M0X5\|CRK25_ARATH	56.066	305	127	4	82	382	264	565	1.76e-110	341

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0088700	A0A1S3V616	61.451	441	105	7	2	383	132	566	7.73e-163	481

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0088700	MtrunA17_Chr1g0206231	57.273	440	125	6	2	383	132	566	3.52e-164	475
Msa0088700	MtrunA17_Chr6g0475201	48.227	423	158	7	1	370	367	781	9.66e-114	352
Msa0088700	MtrunA17_Chr5g0394001	46.853	429	176	10	1	382	126	549	2.18e-113	345
Msa0088700	MtrunA17_Chr5g0393981	46.353	425	183	8	1	384	197	617	3.40e-111	341
Msa0088700	MtrunA17_Chr6g0475111	46.560	436	174	8	1	382	376	806	8.08e-110	342
Msa0088700	MtrunA17_Chr1g0206331	63.396	265	92	3	121	382	292	554	1.08e-109	335
Msa0088700	MtrunA17_Chr1g0206351	57.394	284	116	3	103	382	290	572	1.51e-109	335
Msa0088700	MtrunA17_Chr1g0205771	45.161	434	179	8	1	382	136	562	3.63e-109	334
Msa0088700	MtrunA17_Chr6g0475091	46.083	434	174	9	1	382	376	801	6.31e-109	340
Msa0088700	MtrunA17_Chr3g0119041	45.330	439	180	10	1	382	124	559	9.24e-108	330

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0088700	AT4G05200.1	56.066	305	127	4	82	382	264	565	1.79e-111	341
Msa0088700	AT4G05200.2	56.066	305	127	4	82	382	282	583	2.15e-111	341
Msa0088700	AT4G23180.1	61.597	263	94	4	124	382	307	566	2.01e-110	338
Msa0088700	AT4G23180.2	61.303	261	94	4	124	380	307	564	4.94e-109	332
Msa0088700	AT4G23230.1	57.239	297	119	5	89	382	264	555	8.29e-109	332
Msa0088700	AT4G23140.1	59.542	262	102	2	124	382	309	569	2.71e-108	332
Msa0088700	AT4G23160.1	53.571	308	136	3	78	382	274	577	7.25e-108	332
Msa0088700	AT4G23140.2	58.209	268	102	3	124	382	309	575	7.60e-106	326
Msa0088700	AT4G23220.1	56.270	311	116	7	78	382	259	555	8.38e-106	325
Msa0088700	AT4G11530.1	59.073	259	99	4	128	382	316	571	2.20e-102	317

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Find 84 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATACGCGTAGAATTGTT+GGG	0.500625	1_2:+69847216	Msa0088700:CDS
AAAGATAATATGATTGGAAA+GGG	0.494962	1_2:+69846392	Msa0088700:CDS
AAATCTGATGTGTTTAGTTT+TGG	0.331815	1_2:+69847426	Msa0088700:CDS
AACAGCTATCTCATCCCCAT+TGG	0.561665	1_2:-69846674	None:intergenic
AACGGTTCCTCTTAGCACCT+TGG	0.531016	1_2:+69845664	Msa0088700:CDS
AAGAACAATGGAGGACAATA+TGG	0.380722	1_2:+69847971	Msa0088700:three_prime_UTR
AAGGAAACAGAGGAAGAATC+AGG	0.448729	1_2:+69846186	Msa0088700:CDS
AAGTAATCAAGACTCTTGTT+AGG	0.449113	1_2:-69846844	None:intergenic
AATGATTGTTCCGTAAGTAA+TGG	0.539952	1_2:-69847939	None:intergenic
ACAGGGTGTACTTACCAATG+GGG	0.725424	1_2:+69846660	Msa0088700:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTCTATTCAACACTTTACTT+TGG	+	chr1_2:69845330-69845349	Msa0088700:CDS	30.0%
TTAACAGCAAATGTTCCTAA+TGG	+	chr1_2:69845377-69845396	Msa0088700:CDS	30.0%
TTGACAAACTCAAATTTGTC+TGG	+	chr1_2:69846287-69846306	Msa0088700:intron	30.0%
TGGATTTGGAGAAGTTTATA+AGG	+	chr1_2:69846415-69846434	Msa0088700:intron	30.0%
AAATGTGTTTGGTCCAATTT+GGG	-	chr1_2:69846531-69846550	None:intergenic	30.0%
AAAATGTGTTTGGTCCAATT+TGG	-	chr1_2:69846532-69846551	None:intergenic	30.0%
TGCAAGAGAATTTAAGAATG+AGG	+	chr1_2:69846726-69846745	Msa0088700:CDS	30.0%
AAGTAATCAAGACTCTTGTT+AGG	-	chr1_2:69846847-69846866	None:intergenic	30.0%
AAGGATGATCTTGAATAGAA+GGG	-	chr1_2:69846992-69847011	None:intergenic	30.0%
AAAGGATGATCTTGAATAGA+AGG	-	chr1_2:69846993-69847012	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	69845233	69848257	69845233	ID=Msa0088700;Name=Msa0088700
chr1_2	mRNA	69845233	69848257	69845233	ID=Msa0088700-mRNA-1;Parent=Msa0088700;Name=Msa0088700-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0\|0.62\|0.55\|1\|0.5\|0.44\|9\|426\|385
chr1_2	exon	69845233	69845460	69845233	ID=Msa0088700-mRNA-1:exon:24021;Parent=Msa0088700-mRNA-1
chr1_2	exon	69845644	69845695	69845644	ID=Msa0088700-mRNA-1:exon:24022;Parent=Msa0088700-mRNA-1
chr1_2	exon	69846086	69846229	69846086	ID=Msa0088700-mRNA-1:exon:24023;Parent=Msa0088700-mRNA-1
chr1_2	exon	69846315	69846427	69846315	ID=Msa0088700-mRNA-1:exon:24024;Parent=Msa0088700-mRNA-1
chr1_2	exon	69846664	69846874	69846664	ID=Msa0088700-mRNA-1:exon:24025;Parent=Msa0088700-mRNA-1
chr1_2	exon	69847003	69847243	69847003	ID=Msa0088700-mRNA-1:exon:24026;Parent=Msa0088700-mRNA-1
chr1_2	exon	69847380	69847530	69847380	ID=Msa0088700-mRNA-1:exon:24027;Parent=Msa0088700-mRNA-1
chr1_2	exon	69847754	69848152	69847754	ID=Msa0088700-mRNA-1:exon:24028;Parent=Msa0088700-mRNA-1
chr1_2	exon	69848213	69848257	69848213	ID=Msa0088700-mRNA-1:exon:24029;Parent=Msa0088700-mRNA-1
chr1_2	CDS	69845233	69845460	69845233	ID=Msa0088700-mRNA-1:cds;Parent=Msa0088700-mRNA-1
chr1_2	CDS	69845644	69845695	69845644	ID=Msa0088700-mRNA-1:cds;Parent=Msa0088700-mRNA-1
chr1_2	CDS	69846086	69846229	69846086	ID=Msa0088700-mRNA-1:cds;Parent=Msa0088700-mRNA-1
chr1_2	CDS	69846315	69846427	69846315	ID=Msa0088700-mRNA-1:cds;Parent=Msa0088700-mRNA-1
chr1_2	CDS	69846664	69846874	69846664	ID=Msa0088700-mRNA-1:cds;Parent=Msa0088700-mRNA-1
chr1_2	CDS	69847003	69847243	69847003	ID=Msa0088700-mRNA-1:cds;Parent=Msa0088700-mRNA-1
chr1_2	CDS	69847380	69847530	69847380	ID=Msa0088700-mRNA-1:cds;Parent=Msa0088700-mRNA-1
chr1_2	CDS	69847754	69847771	69847754	ID=Msa0088700-mRNA-1:cds;Parent=Msa0088700-mRNA-1
chr1_2	three_prime_UTR	69847772	69848152	69847772	ID=Msa0088700-mRNA-1:three_prime_utr;Parent=Msa0088700-mRNA-1
chr1_2	three_prime_UTR	69848213	69848257	69848213	ID=Msa0088700-mRNA-1:three_prime_utr;Parent=Msa0088700-mRNA-1

Gene Sequence

>Msa0088700

ATGGTTCGTTATTCCAATCGTTATTTCTTTTCCACGGTGGAAGAGAATCCTAAACTCACCTTCATGAACGAACAGGACTATGAGGGGCCGCAAGTTGGTCTATTCAACACTTTACTTTGGAATACTATGAATGATATCAGAAATTTAACAGCAAATGTTCCTAATGGATCCATGAAGTATGCTTATAAATCAGTTAACATCACAGATAACCAAAAGCTGTATGCAATGCAACCGCAACTGCCTACTGTAACGGTTCCTCTTAGCACCTTGGCATCACCAGGAGGAAAAAGGAAAAAGTCAATTATATCAGTGCTAGTTGTTGTTTTCCCGATTGTTGTGACCGTGGTGCTTTTATGTTTGGGTTGCAGCTGTTTTATAAGAAGGAAACAGAGGAAGAATCAGGAGACTGATCTCAAAGAAAGCTTTGGGGATGATGTTGCTATTTTGGAATCCTTGAGGTTTGGTTTAGGCGAAATTGAATCTGCAACAAACAAGTTTGCTAAAGATAATATGATTGGAAAGGGTGGATTTGGAGAAGGTGTACTTACCAATGGGGATGAGATAGCTGTTAAGAGGTTTTTGGGAAGCTCTAAGCAAGGTGCAAGAGAATTTAAGAATGAGGTTCTTGTCATAGCTCAACTTCAGCACAAAAATCTAGTGAAATTACAAGGATTTTGTCTTCATGGACAAGAAAAGATACTCATATACGAATATGTACCTAACAAGAGTCTTGATTACTTTTTATTTGATCATCCTTTAAAGAGAAGACAATTAAATTGGTATGAAAGGCGCAAGATTATTGGAGGAATTGCTCGAGGAATTCTTTATCTCCATGAGGATTCACGCCTTAAAATTATACACCGTGATCTAAAACCTAGTAATGTTTTGTTAGACGGCAACATGGAACCAAAAATCTCTGATTTCGGTATGGCAAGAATTGTTGCTGCCGATAATATTGAAGAAAATACGCGTAGAATTGTTGGGACATATGGTTACATGTCTCCAGAGTATGCAATGCATGGCCAATTTTCTGTGAAATCTGATGTGTTTAGTTTTGGAGTAATGGTATTGGAGATTATCAATGGAAAAAGGAAAGGCTTTTCCTCTGAATCGGATTGTTTTGAAGATATACGAAAATATGCTTGGACAAATGGATAA

Protein sequence

>Msa0088700

MVRYSNRYFFSTVEENPKLTFMNEQDYEGPQVGLFNTLLWNTMNDIRNLTANVPNGSMKYAYKSVNITDNQKLYAMQPQLPTVTVPLSTLASPGGKRKKSIISVLVVVFPIVVTVVLLCLGCSCFIRRKQRKNQETDLKESFGDDVAILESLRFGLGEIESATNKFAKDNMIGKGGFGEGVLTNGDEIAVKRFLGSSKQGAREFKNEVLVIAQLQHKNLVKLQGFCLHGQEKILIYEYVPNKSLDYFLFDHPLKRRQLNWYERRKIIGGIARGILYLHEDSRLKIIHRDLKPSNVLLDGNMEPKISDFGMARIVAADNIEENTRRIVGTYGYMSPEYAMHGQFSVKSDVFSFGVMVLEIINGKRKGFSSESDCFEDIRKYAWTNG*