AlfalfaGEDB | Msa0088770

M. sativa cultivar zhongmu-4 / Msa0088770

KEGG: -
GO: -
PFAM: PF01657.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0088770	KEH43939.1	64.472	805	141	8	1	664	113	913	0.0	972

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0088770	sp\|Q8GYA4\|CRK10_ARATH	39.655	580	274	11	153	673	107	669	5.28e-127	394

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0088770	A0A072VPL3	64.472	805	141	8	1	664	113	913	0.0	972

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0088770	MtrunA17_Chr6g0474901	44.636	811	293	14	7	673	96	894	0.0	612
Msa0088770	MtrunA17_Chr6g0474901	35.165	182	109	4	153	331	91	266	1.03e-27	119
Msa0088770	MtrunA17_Chr6g0475201	43.634	809	292	15	7	673	103	889	0.0	586
Msa0088770	MtrunA17_Chr6g0475201	37.349	166	96	4	143	308	92	249	2.67e-25	112
Msa0088770	MtrunA17_Chr6g0474811	43.468	819	296	18	7	673	98	901	0.0	585
Msa0088770	MtrunA17_Chr6g0474811	31.579	190	113	5	153	332	93	275	5.08e-23	104
Msa0088770	MtrunA17_Chr1g0206261	75.567	397	45	3	328	674	19	413	0.0	575
Msa0088770	MtrunA17_Chr6g0475091	43.086	810	304	14	7	672	112	908	0.0	573
Msa0088770	MtrunA17_Chr6g0475091	37.566	189	91	8	153	329	107	280	1.03e-21	100
Msa0088770	MtrunA17_Chr8g0347571	43.120	814	296	18	7	673	104	897	0.0	572

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0088770	AT4G23180.1	39.655	580	274	11	153	673	107	669	5.37e-128	394
Msa0088770	AT4G23270.2	37.828	571	284	11	154	673	95	645	5.12e-119	370
Msa0088770	AT4G23270.1	37.828	571	284	11	154	673	95	645	5.12e-119	370
Msa0088770	AT4G23270.3	38.113	551	275	10	154	653	95	630	2.52e-117	365
Msa0088770	AT4G21410.3	36.548	591	293	13	154	673	100	679	3.95e-117	366
Msa0088770	AT4G05200.1	37.094	585	294	13	154	673	100	675	7.62e-117	365
Msa0088770	AT4G23140.1	37.585	588	288	12	154	673	98	674	1.63e-116	364
Msa0088770	AT4G05200.2	37.094	585	294	13	154	673	118	693	1.85e-116	364
Msa0088770	AT4G23280.2	36.797	587	285	12	154	673	97	664	5.41e-116	362
Msa0088770	AT4G23280.1	36.395	588	288	11	154	673	97	666	1.20e-115	362

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Find 128 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTTCATCAATTCTATA+TGG	0.357200	1_2:+69895773	Msa0088770:CDS
AAATTGCAAACCCTCCAAAG+TGG	0.615025	1_2:-69896996	None:intergenic
AACGTTACAAAATTATAAGA+GGG	0.601709	1_2:+69897548	Msa0088770:CDS
AACTCCAAGGAATTTCGTTT+TGG	0.311441	1_2:-69896013	None:intergenic
AAGAAGGCCAAGAATGGTGA+TGG	0.588541	1_2:+69896734	Msa0088770:CDS
AAGATTGGTGAAGGTGGATT+TGG	0.287396	1_2:+69897067	Msa0088770:CDS
AAGATTTCTTTGCTGTAACT+TGG	0.440726	1_2:-69897277	None:intergenic
AAGGAACAATCATAGTTCAA+TGG	0.469415	1_2:-69894938	None:intergenic
AAGTGGAGAAGCTTTGCAGC+AGG	0.516464	1_2:-69895815	None:intergenic
AAGTGGAGTCTATCCAGACA+GGG	0.636828	1_2:+69895862	Msa0088770:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGGAACAATCATAGTTCAAT+GGG	-	chr1_2:69894940-69894959	None:intergenic	30.0%
AAGGAACAATCATAGTTCAA+TGG	-	chr1_2:69894941-69894960	None:intergenic	30.0%
CTTGACACCAATTGAATAAT+TGG	-	chr1_2:69895143-69895162	None:intergenic	30.0%
ACAAAAGAAGCAATCATATC+TGG	+	chr1_2:69895172-69895191	Msa0088770:CDS	30.0%
AATAACATGCCAATGATAGT+AGG	+	chr1_2:69895293-69895312	Msa0088770:intron	30.0%
ATAACATGCCAATGATAGTA+GGG	+	chr1_2:69895294-69895313	Msa0088770:intron	30.0%
GGAATAATTTCTGATGGTAT+GGG	-	chr1_2:69895386-69895405	None:intergenic	30.0%
TGGAATAATTTCTGATGGTA+TGG	-	chr1_2:69895387-69895406	None:intergenic	30.0%
ATCTGAAAGGATAGAATGAA+AGG	-	chr1_2:69895736-69895755	None:intergenic	30.0%
AGCATATACTTTACATGAAG+TGG	+	chr1_2:69895845-69895864	Msa0088770:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	69894911	69898403	69894911	ID=Msa0088770;Name=Msa0088770
chr1_2	mRNA	69894911	69898403	69894911	ID=Msa0088770-mRNA-1;Parent=Msa0088770;Name=Msa0088770-mRNA-1;_AED=0.43;_eAED=0.43;_QI=0\|0\|0\|1\|1\|1\|8\|0\|674
chr1_2	exon	69894911	69895239	69894911	ID=Msa0088770-mRNA-1:exon:24054;Parent=Msa0088770-mRNA-1
chr1_2	exon	69895346	69895472	69895346	ID=Msa0088770-mRNA-1:exon:24055;Parent=Msa0088770-mRNA-1
chr1_2	exon	69895639	69896164	69895639	ID=Msa0088770-mRNA-1:exon:24056;Parent=Msa0088770-mRNA-1
chr1_2	exon	69896724	69896864	69896724	ID=Msa0088770-mRNA-1:exon:24057;Parent=Msa0088770-mRNA-1
chr1_2	exon	69896981	69897102	69896981	ID=Msa0088770-mRNA-1:exon:24058;Parent=Msa0088770-mRNA-1
chr1_2	exon	69897180	69897390	69897180	ID=Msa0088770-mRNA-1:exon:24059;Parent=Msa0088770-mRNA-1
chr1_2	exon	69897518	69897756	69897518	ID=Msa0088770-mRNA-1:exon:24060;Parent=Msa0088770-mRNA-1
chr1_2	exon	69898074	69898403	69898074	ID=Msa0088770-mRNA-1:exon:24061;Parent=Msa0088770-mRNA-1
chr1_2	CDS	69894911	69895239	69894911	ID=Msa0088770-mRNA-1:cds;Parent=Msa0088770-mRNA-1
chr1_2	CDS	69895346	69895472	69895346	ID=Msa0088770-mRNA-1:cds;Parent=Msa0088770-mRNA-1
chr1_2	CDS	69895639	69896164	69895639	ID=Msa0088770-mRNA-1:cds;Parent=Msa0088770-mRNA-1
chr1_2	CDS	69896724	69896864	69896724	ID=Msa0088770-mRNA-1:cds;Parent=Msa0088770-mRNA-1
chr1_2	CDS	69896981	69897102	69896981	ID=Msa0088770-mRNA-1:cds;Parent=Msa0088770-mRNA-1
chr1_2	CDS	69897180	69897390	69897180	ID=Msa0088770-mRNA-1:cds;Parent=Msa0088770-mRNA-1
chr1_2	CDS	69897518	69897756	69897518	ID=Msa0088770-mRNA-1:cds;Parent=Msa0088770-mRNA-1
chr1_2	CDS	69898074	69898403	69898074	ID=Msa0088770-mRNA-1:cds;Parent=Msa0088770-mRNA-1

Gene Sequence

>Msa0088770

ATGACCCGTCACAATTTATCCTCGGACCCATTGAACTATGATTGTTCCTTGTCCAAACAGGTTGTGATTTGGAAGGAGTACTGCATGCTAAGATATTCCAACAATTCTTTCTTCTCCACTGCTGACATAAGTTCACCTTCTAGCTCCTGCTTGTCTGTCAACGTGTTCAACCGGGCAATATTCGAGCGTTTAGTTTTCAAAACCTTGAACAACGTGGCAGATGAGGCAGCCAATTATTCAATTGGTGTCAAGAAGTATGCCACAAAAGAAGCAATCATATCTGGCTTTCAAACCCTTTATTTTCAAGCTCAGTGCACACCAGACACAAAATATGATGTGTACCCTTTCTATTGCCCTAGTAACGCTCCCATACCATCAGAAATTATTCCAGCTTCCAATACACTTGATTCAAAATACTCACATCATCCTGCTTATCTTTCCCACAACTGTTCAACTCAATGTGTCCAAGATGCAACCAAAAAAATATCTTCGGAGTGCCCTATCTCTAAAGAGGCTATAATTTGGTATGATAAATGCTTACTCCGCTATTCCTTTCATTCTATCCTTTCAGATATCGATACAAGTGGTCCAAAATTTCATCAATTCTATATGGCCAATACATTTAACCCGAACCTGCTGCAAAGCTTCTCCACTTGGAAACTAGCATATACTTTACATGAAGTGGAGTCTATCCAGACAGGGGAGAGTACTATCAAGAATTATGAAACAAGATCGGTAAAATTGAATGAGCATCAAACCCTTTACACTCTTGTTCAATGTACACCAGATTTGTCTGATGGAGACTGCAGCACCTGCCTGAAAAACATTTTCCAAAACGAAATTCCTTGGAGTTGTTTAGCAAGTCCAGAGGGAAAAATTCTATATCCTAGCTGCTATATGATGTTTGGATTGTCCCAATTCTACAACAATAATGATGAACCAGAGGCGTTAGAGCAAGTTAATCCTCCTCCAAAAGCTAAAGAGGATGAAAAAAGAAGGCCAAGAATGGTGATGGTTGTTGTTCCGGTCATCCTTTCAATATTGCTCGTAACTTTTTCCTACTATTTGCTAACGAAAAAAGCAAGAAAGAGCAGTTATAAGGCTTTAATTCTAAAAGAAAATTTTGGTCATGAAAGTACCACTTTGGAGGGTTTGCAATTTGAAATGGCCGTAATTAAAACAGCAACAAACAACTTTTCACATGAAAACAAGATTGGTGAAGGTGGATTTGGAGAAGTTTACAAGGGCATTCTTTCTGATGGACGGCACATAGCTGTTAAGAGGCTTTCATCAAATTCCAACCAAGGCATAGTCGAGTTCAAGAATGAAATTTTATTGATAGCCAAGTTACAGCAAAGAAATCTTGTGGCATTAATAGTTTTTTGCCTAGAAGAGCAAGAGAAAATTCTTATCTATGAATATGTGTCAAACGGGAGTCTTGATTCCTATTTATTTGATACTCAAGAACAGAAGTTAAGCTGGGCTGAACGTTACAAAATTATAAGAGGGACTGCTCTAGGAATTCTTTATTTGCATGAATATTCTCGTCTCAAAGTTATACACCGTGATCTCAAACCTAGCAATGTTCTATTAGATGAAAATATGAATCCTAAAATATCAGATTTCGGCATGGCTAGAATTGTTCAAATAGATCAAGATCGTGGACATACCAGCAAAATTGCAGGAACATGGCAAGCATGGAGACAATGGAAGAATGAAACTCCATTGATCATATTGGATCCAAAAATGCAAGAAAATTATTCTCATACTGAAGTTATTAAGTGCATACAAATTGGTTTGTTATGTGTTCAAGAAAACCCAAATGTTAGACCTACAATGGCATCAGTTGTTTCATATCTTAATAATCGTTCACCAGAACTGTCATCTCCACAAGAACCGGCATTTTTCATACACGATAGGATGAATCCAGAAGCAACAGCACAAATGGAATCAAGTTCTGCTAATAATTTTATATCATTTTCTGTCAACGATATGTCTATAAGTGAATTTTATCCTAGACGGTAG

Protein sequence

>Msa0088770

MTRHNLSSDPLNYDCSLSKQVVIWKEYCMLRYSNNSFFSTADISSPSSSCLSVNVFNRAIFERLVFKTLNNVADEAANYSIGVKKYATKEAIISGFQTLYFQAQCTPDTKYDVYPFYCPSNAPIPSEIIPASNTLDSKYSHHPAYLSHNCSTQCVQDATKKISSECPISKEAIIWYDKCLLRYSFHSILSDIDTSGPKFHQFYMANTFNPNLLQSFSTWKLAYTLHEVESIQTGESTIKNYETRSVKLNEHQTLYTLVQCTPDLSDGDCSTCLKNIFQNEIPWSCLASPEGKILYPSCYMMFGLSQFYNNNDEPEALEQVNPPPKAKEDEKRRPRMVMVVVPVILSILLVTFSYYLLTKKARKSSYKALILKENFGHESTTLEGLQFEMAVIKTATNNFSHENKIGEGGFGEVYKGILSDGRHIAVKRLSSNSNQGIVEFKNEILLIAKLQQRNLVALIVFCLEEQEKILIYEYVSNGSLDSYLFDTQEQKLSWAERYKIIRGTALGILYLHEYSRLKVIHRDLKPSNVLLDENMNPKISDFGMARIVQIDQDRGHTSKIAGTWQAWRQWKNETPLIILDPKMQENYSHTEVIKCIQIGLLCVQENPNVRPTMASVVSYLNNRSPELSSPQEPAFFIHDRMNPEATAQMESSSANNFISFSVNDMSISEFYPRR*