AlfalfaGEDB | Msa0088890

M. sativa cultivar zhongmu-4 / Msa0088890

KEGG: K04733
GO: GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700
PFAM: PF01657.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0088890	XP_039685908.1	92.037	653	52	0	1	653	1	653	0.0	1198

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0088890	sp\|Q8S9L6\|CRK29_ARATH	48.326	687	303	15	7	653	5	679	0.0	587

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0088890	A0A396K263	92.037	653	52	0	1	653	643	1295	0.0	1197
Msa0088890	A0A396K263	92.598	635	47	0	1	635	1	635	0.0	1147

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0088890	MtrunA17_Chr1g0206521	92.037	653	52	0	1	653	643	1295	1197
Msa0088890	MtrunA17_Chr1g0206521	92.598	635	47	0	1	635	1	635	1147
Msa0088890	MtrunA17_Chr1g0206461	88.668	653	72	2	1	653	1	651	1171
Msa0088890	MtrunA17_Chr1g0206531	83.333	672	92	3	1	653	1	671	1070
Msa0088890	MtrunA17_Chr1g0206451	85.388	657	91	3	1	653	35	690	1042
Msa0088890	MtrunA17_Chr5g0426941	57.738	672	249	12	10	653	1	665	731
Msa0088890	MtrunA17_Chr1g0154371	59.496	674	249	11	1	653	8	678	726
Msa0088890	MtrunA17_Chr1g0206561	58.797	665	242	8	9	653	3	655	712
Msa0088890	MtrunA17_Chr1g0154311	57.121	667	250	11	17	653	10	670	702
Msa0088890	MtrunA17_Chr1g0154351	55.328	685	251	13	11	653	3	674	697

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0088890	AT4G21410.3	48.326	687	303	15	7	653	5	679	587
Msa0088890	AT4G38830.1	48.611	648	309	8	27	653	21	665	582
Msa0088890	AT4G23180.1	48.452	646	298	15	30	653	37	669	577
Msa0088890	AT4G05200.2	45.590	669	336	12	4	652	19	679	570
Msa0088890	AT4G05200.1	45.590	669	336	12	4	652	1	661	569
Msa0088890	AT4G23230.1	48.933	609	279	12	32	620	26	622	566
Msa0088890	AT4G21400.2	48.281	640	298	12	7	620	5	637	557
Msa0088890	AT4G21400.1	47.465	651	299	12	7	620	5	649	553
Msa0088890	AT4G23160.1	46.119	657	315	11	25	653	37	682	550
Msa0088890	AT4G23280.1	48.899	636	291	13	44	653	39	666	544

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Find 115 sgRNAs with CRISPR-Local

Find 573 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGTTGTCAACAAATTC+AGG	0.393857	1_2:+70132082	Msa0088890:CDS
AAAATTCAAAGTTGCATTAC+CGG	0.308779	1_2:-70130997	None:intergenic
AAACAAAGAACGATTGGATT+GGG	0.464657	1_2:+70132347	Msa0088890:CDS
AAACTTGGACATGGCGGATT+TGG	0.256425	1_2:+70131895	Msa0088890:CDS
AAAGCTTGTTGCGTTCTTCA+TGG	0.383255	1_2:+70132968	Msa0088890:CDS
AACAACAGTCGGCACAACTA+TGG	0.428354	1_2:-70131441	None:intergenic
AACGCCATTGGACTCTGCAG+AGG	0.649863	1_2:+70130693	Msa0088890:CDS
AAGAACGATTGGATTGGGAA+AGG	0.624296	1_2:+70132352	Msa0088890:CDS
AAGCTTGTTGCGTTCTTCAT+GGG	0.518288	1_2:+70132969	Msa0088890:CDS
AAGGCAAGGATAACACTCGA+AGG	0.688693	1_2:+70131515	Msa0088890:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TACTCAAACCGATCAATATT+TGG	+	chr1_2:70130831-70130850	Msa0088890:CDS	30.0%
CCATAATGCCAAATATTGAT+CGG	-	chr1_2:70130842-70130861	None:intergenic	30.0%
CAATAGAAATATAACCGATG+TGG	+	chr1_2:70130890-70130909	Msa0088890:CDS	30.0%
TTGATTAAATCGATCCACAT+CGG	-	chr1_2:70130907-70130926	None:intergenic	30.0%
TATGCAAATGAAAGTTAGCA+GGG	-	chr1_2:70131480-70131499	None:intergenic	30.0%
ATATGCAAATGAAAGTTAGC+AGG	-	chr1_2:70131481-70131500	None:intergenic	30.0%
CTTTCATTTGCATATGCTTA+AGG	+	chr1_2:70131486-70131505	Msa0088890:CDS	30.0%
TTTGCATATGCTTAAGGAAA+AGG	+	chr1_2:70131492-70131511	Msa0088890:CDS	30.0%
AAAAGGTTGTCAACAAATTC+AGG	+	chr1_2:70132082-70132101	Msa0088890:CDS	30.0%
TCCAATAAACAAAGAACGAT+TGG	+	chr1_2:70132341-70132360	Msa0088890:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	70130444	70140192	70130444	ID=Msa0088890;Name=Msa0088890
chr1_2	mRNA	70130444	70140192	70130444	ID=Msa0088890-mRNA-1;Parent=Msa0088890;Name=Msa0088890-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0\|1\|0.87\|1\|0.85\|0.75\|8\|172\|653
chr1_2	exon	70130444	70131236	70130444	ID=Msa0088890-mRNA-1:exon:24111;Parent=Msa0088890-mRNA-1
chr1_2	exon	70131411	70131536	70131411	ID=Msa0088890-mRNA-1:exon:24112;Parent=Msa0088890-mRNA-1
chr1_2	exon	70131794	70131930	70131794	ID=Msa0088890-mRNA-1:exon:24113;Parent=Msa0088890-mRNA-1
chr1_2	exon	70132049	70132259	70132049	ID=Msa0088890-mRNA-1:exon:24114;Parent=Msa0088890-mRNA-1
chr1_2	exon	70132340	70132577	70132340	ID=Msa0088890-mRNA-1:exon:24115;Parent=Msa0088890-mRNA-1
chr1_2	exon	70132868	70133018	70132868	ID=Msa0088890-mRNA-1:exon:24116;Parent=Msa0088890-mRNA-1
chr1_2	exon	70133152	70133480	70133152	ID=Msa0088890-mRNA-1:exon:24117;Parent=Msa0088890-mRNA-1
chr1_2	exon	70140044	70140192	70140044	ID=Msa0088890-mRNA-1:exon:24118;Parent=Msa0088890-mRNA-1
chr1_2	CDS	70130444	70131236	70130444	ID=Msa0088890-mRNA-1:cds;Parent=Msa0088890-mRNA-1
chr1_2	CDS	70131411	70131536	70131411	ID=Msa0088890-mRNA-1:cds;Parent=Msa0088890-mRNA-1
chr1_2	CDS	70131794	70131930	70131794	ID=Msa0088890-mRNA-1:cds;Parent=Msa0088890-mRNA-1
chr1_2	CDS	70132049	70132259	70132049	ID=Msa0088890-mRNA-1:cds;Parent=Msa0088890-mRNA-1
chr1_2	CDS	70132340	70132577	70132340	ID=Msa0088890-mRNA-1:cds;Parent=Msa0088890-mRNA-1
chr1_2	CDS	70132868	70133018	70132868	ID=Msa0088890-mRNA-1:cds;Parent=Msa0088890-mRNA-1
chr1_2	CDS	70133152	70133457	70133152	ID=Msa0088890-mRNA-1:cds;Parent=Msa0088890-mRNA-1
chr1_2	three_prime_UTR	70133458	70133480	70133458	ID=Msa0088890-mRNA-1:three_prime_utr;Parent=Msa0088890-mRNA-1
chr1_2	three_prime_UTR	70140044	70140192	70140044	ID=Msa0088890-mRNA-1:three_prime_utr;Parent=Msa0088890-mRNA-1

Gene Sequence

>Msa0088890

ATGACAACTGTTTCTAGCAAGCTATTATTTTCCTTTTATGCTTTTCTTCTTTTTATTATCATTATCGTATCTCAAGCCCAAGGCCAACCAAATTTTTTGCGCAGCTATTGTTTAAACAATAACATTAACTACACAGCCAATAGCACCTATCAAAACAACCTCAACACTCTTTTATCCAATCTCATTTCCAACACACAAATCAACTACGGTTTCTATAATTTTTCTTATGGCCAAAACACTGACAAAGTAAACGCCATTGGACTCTGCAGAGGAGATGTTAAACCCGACGTCTGCCGTAGTTGTCTCAACGATTCAAGAGTTCTTCTCACAAAACTTTGTCCAAACCAAAAAGAAACAATTAGTTGGTATGATAACTGCATGTTGCGTTACTCAAACCGATCAATATTTGGCATTATGGATGCTTCATTTTCATATTATAAGTGGAACAATAGAAATATAACCGATGTGGATCGATTTAATCAAGTTCTTGGGAACTTGATGAGGAAACTCAATGAAATAGCTGCATCGGGTGATTCTCGTCGTAAGTTTGCTACCGGTAATGCAACTTTGAATTTTGAAACCATATATGGTCTTGTGCAGTGTACACCTGACTTGTCAGGGCAAGATTGCAATGATTGTTTAGAGCGTGCTATTTCAGAAATTCCAAGTGTTTTTAAAAACAAGATTGGTGGTAGAGTTCTCAAACTAAGTTGTAATATTAGATATGAAATATATTCCTTCTATGGTCCTACGACAGTAATAGACCAAGATGAAACCTCCCCACCAGAAGACGAAAAAAACAAATCATCACATACTACCATCGCCATAGTTGTGCCGACTGTTGTTGTTGTTGTTGCTGCCCTGCTAACTTTCATTTGCATATGCTTAAGGAAAAGGAAGGCAAGGATAACACTCGAAGATATAGAAGAAGATGATAATAATGATATTGAAATCACTGAGTCATTGCTATTCAACTTCGAGACATTACGAGTTGCTACAAGTAACTTTTCTGAAGCTAATAAACTTGGACATGGCGGATTTGGAGTTGTTTATCAGGGTATACTCTCTGGTGGACAAGTGATTGCGGTCAAAAGGTTGTCAACAAATTCAGGACAAGGGGATATTGAATTTAAGAATGAAGTGCTTTTAGTTGCTAAGCTTCAACATCGAAATTTAGTTCGACTACTTGGTTTTTGTCTAGAAGGAAGAGAAAGATTGCTTGTCTATGAATATGTTCTGAATAAAAGTCTTGATTATTTTATATTTGATCCAATAAACAAAGAACGATTGGATTGGGAAAGGCGCTACAAAATCATTGGAGGTATTGCTAGAGGCCTTCTTTACCTTCATCAGGATTCTCAACTTCGTATTATACATCGTGATCTTAAAGCAAGTAACATTCTCTTGGACGAAAAGTTGAATCCTAAAATATCAGATTTTGGTATCGCCAGACTACTTCTTGTCGATCAAACTCAAGTTAATACAAATAAAGTCGTTGGAACATATGGATATATGGCTCCTGAGTATGCAATGTTTGGAGAATTTTCGGTAAAATCGGATGTTTTTAGTTTTGGTGTACTAGTTTTGGAGATTATAAGTGGACAGAAAGCTTGTTGCGTTCTTCATGGGCAGAGTCAGGAGGATTTACTTAGCTTTGCATGGAGAAACTGGAGGGAGGGTACAATCACAAATATAATAGATCGATCATTAAGCAATGGTTCACAAAATGAAATAATGAGATGCATTCACATTGCTTTACTATGTGTTCAAGAAAATTTGGTTGAAAGACCAACAATGGCAACCGTTGTACTCATGCTTAGTAGTTATTCTATCTCTCTCTCTGTACCTTTGGAGCCTGCATCTATTGTGGGAGGCACAACTAGAAGTCTTCCAGTTCGAGACATGCAATTTGAGGGAGAATCAAGAAACCATGCTTCAATTACTGACCCATACCCTCGATAG

Protein sequence

>Msa0088890

MTTVSSKLLFSFYAFLLFIIIIVSQAQGQPNFLRSYCLNNNINYTANSTYQNNLNTLLSNLISNTQINYGFYNFSYGQNTDKVNAIGLCRGDVKPDVCRSCLNDSRVLLTKLCPNQKETISWYDNCMLRYSNRSIFGIMDASFSYYKWNNRNITDVDRFNQVLGNLMRKLNEIAASGDSRRKFATGNATLNFETIYGLVQCTPDLSGQDCNDCLERAISEIPSVFKNKIGGRVLKLSCNIRYEIYSFYGPTTVIDQDETSPPEDEKNKSSHTTIAIVVPTVVVVVAALLTFICICLRKRKARITLEDIEEDDNNDIEITESLLFNFETLRVATSNFSEANKLGHGGFGVVYQGILSGGQVIAVKRLSTNSGQGDIEFKNEVLLVAKLQHRNLVRLLGFCLEGRERLLVYEYVLNKSLDYFIFDPINKERLDWERRYKIIGGIARGLLYLHQDSQLRIIHRDLKASNILLDEKLNPKISDFGIARLLLVDQTQVNTNKVVGTYGYMAPEYAMFGEFSVKSDVFSFGVLVLEIISGQKACCVLHGQSQEDLLSFAWRNWREGTITNIIDRSLSNGSQNEIMRCIHIALLCVQENLVERPTMATVVLMLSSYSISLSVPLEPASIVGGTTRSLPVRDMQFEGESRNHASITDPYPR*