AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0090820

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0090820 MtrunA17_Chr1g0210821 96.743 522 11 4 4 523 54 571 0.0 1017
Msa0090820 MtrunA17_Chr1g0162971 57.975 395 110 15 4 388 51 399 8.69e-131 387
Msa0090820 MtrunA17_Chr1g0199101 48.889 495 194 14 4 480 57 510 1.33e-125 377
Msa0090820 MtrunA17_Chr1g0163001 45.572 542 174 19 5 498 54 522 3.37e-123 371
Msa0090820 MtrunA17_Chr4g0040571 45.436 493 203 17 4 473 49 498 1.21e-108 333
Msa0090820 MtrunA17_Chr2g0330171 89.542 153 16 0 4 156 56 208 3.18e-105 323
Msa0090820 MtrunA17_Chr8g0342421 88.889 153 17 0 4 156 72 224 5.10e-105 324
Msa0090820 MtrunA17_Chr7g0263941 87.582 153 19 0 4 156 44 196 2.46e-104 318
Msa0090820 MtrunA17_Chr1g0181381 83.851 161 25 1 4 163 48 208 4.37e-102 316
Msa0090820 MtrunA17_Chr7g0268961 83.871 155 25 0 2 156 30 184 9.06e-102 315
Msa0090820 MtrunA17_Chr8g0373541 84.667 150 23 0 4 153 43 192 2.31e-100 312
Msa0090820 MtrunA17_Chr1g0185121 47.849 372 102 10 4 366 50 338 7.37e-100 308
Msa0090820 MtrunA17_Chr1g0191991 85.333 150 22 0 4 153 73 222 2.12e-99 310
Msa0090820 MtrunA17_Chr4g0029521 75.294 170 39 2 4 170 48 217 5.25e-97 302
Msa0090820 MtrunA17_Chr1g0151351 82.119 151 26 1 4 153 51 201 2.30e-95 297
Msa0090820 MtrunA17_Chr2g0326381 81.169 154 28 1 4 156 42 195 1.95e-94 293
Msa0090820 MtrunA17_Chr3g0141431 75.676 148 35 1 4 150 32 179 1.84e-86 272
Msa0090820 MtrunA17_Chr2g0324991 83.206 131 22 0 5 135 3 133 4.92e-86 262
Msa0090820 MtrunA17_Chr8g0375521 52.020 198 93 2 4 199 37 234 1.00e-70 232
Msa0090820 MtrunA17_Chr6g0479921 62.329 146 54 1 4 148 39 184 2.28e-68 227
Msa0090820 MtrunA17_Chr1g0200421 35.762 151 85 4 8 146 236 386 2.71e-24 106
Msa0090820 MtrunA17_Chr3g0123941 29.843 191 120 5 4 186 118 302 5.06e-22 97.1
Msa0090820 MtrunA17_Chr2g0320341 34.868 152 85 4 6 143 227 378 1.65e-21 96.7
Msa0090820 MtrunA17_Chr8g0352011 36.301 146 83 5 10 146 166 310 1.22e-19 90.5
Msa0090820 MtrunA17_Chr5g0422571 35.417 144 82 4 15 148 106 248 1.33e-19 89.4
Msa0090820 MtrunA17_Chr7g0258011 33.540 161 89 6 10 153 176 335 3.86e-19 89.0
Msa0090820 MtrunA17_Chr1g0198651 35.862 145 78 5 15 146 107 249 6.38e-19 87.4
Msa0090820 MtrunA17_Chr4g0053341 33.775 151 90 4 5 146 69 218 1.37e-18 85.1
Msa0090820 MtrunA17_Chr8g0382121 31.757 148 90 5 7 143 109 256 2.06e-18 86.3
Msa0090820 MtrunA17_Chr1g0173841 34.932 146 85 5 10 146 215 359 2.12e-18 87.4
Msa0090820 MtrunA17_Chr2g0328921 33.562 146 87 5 10 146 138 282 8.40e-18 84.3
Msa0090820 MtrunA17_Chr2g0321291 34.694 147 84 5 10 146 133 277 2.34e-17 83.2
Msa0090820 MtrunA17_Chr4g0026521 34.014 147 85 5 10 146 118 262 4.25e-17 82.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0090820 AT2G02070.2 48.593 533 151 20 6 470 64 541 1.71e-125 380
Msa0090820 AT2G02070.1 48.593 533 151 20 6 470 64 541 1.71e-125 380
Msa0090820 AT2G02080.1 47.071 478 168 15 4 461 64 476 2.76e-120 363
Msa0090820 AT2G02080.4 47.071 478 168 15 4 461 64 476 2.76e-120 363
Msa0090820 AT2G02080.5 47.071 478 168 15 4 461 64 476 2.76e-120 363
Msa0090820 AT2G02080.3 47.071 478 168 15 4 461 64 476 2.76e-120 363
Msa0090820 AT2G02080.6 46.121 464 165 14 18 461 1 399 4.04e-111 337
Msa0090820 AT2G02080.2 46.121 464 165 14 18 461 1 399 4.04e-111 337
Msa0090820 AT1G14580.1 86.335 161 22 0 4 164 63 223 5.11e-107 328
Msa0090820 AT1G14580.2 86.335 161 22 0 4 164 63 223 5.11e-107 328
Msa0090820 AT1G14580.3 86.335 161 22 0 4 164 77 237 9.77e-107 327
Msa0090820 AT5G66730.1 42.553 470 210 10 4 464 42 460 4.83e-106 326
Msa0090820 AT1G03840.1 45.155 485 220 15 4 473 51 504 4.35e-105 324
Msa0090820 AT5G44160.2 43.096 478 210 12 1 473 5 425 7.03e-105 321
Msa0090820 AT1G03840.2 44.948 485 221 15 4 473 49 502 2.36e-104 322
Msa0090820 AT5G44160.1 43.158 475 208 11 4 473 47 464 2.42e-104 321
Msa0090820 AT3G50700.1 85.621 153 22 0 4 156 44 196 2.63e-102 315
Msa0090820 AT3G45260.2 86.364 154 20 1 4 156 49 202 3.74e-99 307
Msa0090820 AT3G45260.1 86.364 154 20 1 4 156 49 202 3.74e-99 307
Msa0090820 AT5G03150.1 83.019 159 26 1 4 161 63 221 2.44e-98 306
Msa0090820 AT3G13810.6 83.544 158 25 1 4 160 61 218 9.49e-98 305
Msa0090820 AT1G55110.3 83.439 157 25 1 4 159 73 229 1.14e-97 303
Msa0090820 AT1G55110.1 83.439 157 25 1 4 159 73 229 1.14e-97 303
Msa0090820 AT1G55110.2 83.439 157 25 1 4 159 73 229 1.14e-97 303
Msa0090820 AT3G13810.4 83.544 158 25 1 4 160 80 237 1.16e-97 305
Msa0090820 AT3G13810.1 83.544 158 25 1 4 160 80 237 1.16e-97 305
Msa0090820 AT3G13810.5 83.544 158 25 1 4 160 75 232 1.27e-97 305
Msa0090820 AT4G02670.1 83.766 154 24 1 4 156 63 216 3.59e-97 300
Msa0090820 AT4G02670.2 83.766 154 24 1 4 156 65 218 3.94e-97 300
Msa0090820 AT3G13810.3 83.439 157 25 1 5 160 68 224 5.11e-97 303
Msa0090820 AT3G13810.2 83.439 157 25 1 5 160 82 238 6.13e-97 303
Msa0090820 AT5G60470.2 81.169 154 28 1 4 156 54 207 3.36e-95 297
Msa0090820 AT5G60470.3 81.169 154 28 1 4 156 50 203 3.62e-95 297
Msa0090820 AT5G60470.1 78.981 157 32 1 1 156 42 198 8.85e-95 296
Msa0090820 AT2G01940.1 60.366 164 61 3 4 163 54 217 1.34e-69 230
Msa0090820 AT1G25250.1 62.162 148 53 2 3 147 19 166 3.42e-68 224
Msa0090820 AT1G25250.3 61.905 147 53 2 4 147 43 189 1.83e-67 223
Msa0090820 AT1G68130.1 62.329 146 53 2 4 147 51 196 3.03e-67 223
Msa0090820 AT2G01940.3 59.639 166 60 5 4 163 54 218 6.64e-66 220
Msa0090820 AT2G01940.2 57.812 128 50 3 40 163 1 128 6.72e-46 164
Msa0090820 AT1G68130.2 61.818 110 40 2 40 147 1 110 1.52e-44 160
Msa0090820 AT1G25250.2 60.360 111 41 2 40 147 1 111 8.84e-44 157
Msa0090820 AT1G34370.3 33.987 153 87 3 8 146 19 171 2.05e-23 100
Msa0090820 AT1G34370.2 33.987 153 87 3 8 146 229 381 3.36e-23 103
Msa0090820 AT1G34370.1 33.987 153 87 3 8 146 229 381 3.36e-23 103
Msa0090820 AT5G22890.1 31.737 167 99 5 8 159 202 368 1.34e-21 97.1
Msa0090820 AT1G13290.1 35.570 149 82 6 15 151 93 239 2.33e-18 86.3
Msa0090820 AT1G51220.1 32.877 146 88 5 10 146 165 309 3.24e-18 86.3
Msa0090820 AT3G57670.1 34.247 146 86 5 10 146 204 348 3.56e-18 87.0
Msa0090820 AT3G20880.1 33.562 146 87 5 10 146 243 387 6.88e-18 86.3
Msa0090820 AT1G34790.1 35.333 150 85 6 7 146 129 276 1.20e-17 84.3
Msa0090820 AT1G08290.1 36.765 136 73 6 22 146 179 312 1.59e-16 81.3

Find 140 sgRNAs with CRISPR-Local

Find 469 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACCTGTTTGTTGCCATTA+GGG 0.258326 1_2:-72914145 None:intergenic
AAGAAGCTTCAATAAAATTC+AGG 0.266894 1_2:-72921404 None:intergenic
ACTTGATCTAATTAAAGATT+TGG 0.270733 1_2:+72921353 Msa0090820:three_prime_UTR
GTTTGTTGCCATTAGGGTCT+TGG 0.290354 1_2:-72914139 None:intergenic
GATCATGAGGAACAAAGTTT+TGG 0.296420 1_2:-72917501 None:intergenic
ATGGCACCAGTTAGAGAAAT+TGG 0.304925 1_2:-72917238 None:intergenic
AGCATCATCTTCCTACTAAA+AGG 0.316308 1_2:+72918335 Msa0090820:exon
TGGGCATTTGTGCAGCTACC+TGG 0.317019 1_2:-72917318 None:intergenic
TAAACCTGTTTGTTGCCATT+AGG 0.329788 1_2:-72914146 None:intergenic
TAATGTTACTGTTTCCTCCT+TGG 0.332632 1_2:-72917735 None:intergenic
GGTGCTGGTGGTGGTGGAGC+AGG 0.337056 1_2:+72918297 Msa0090820:CDS
CAAAGTGGAGGAGGAGGAGG+AGG 0.344709 1_2:+72918054 Msa0090820:CDS
AATGTTACTGTTTCCTCCTT+GGG 0.349156 1_2:-72917734 None:intergenic
GCAAGTAACTCAGCATCTTC+TGG 0.352752 1_2:+72917895 Msa0090820:CDS
ACTTCTCTTCTCAAAAGCTT+TGG 0.354902 1_2:+72917859 Msa0090820:CDS
TTTGTTGCCATTAGGGTCTT+GGG 0.357166 1_2:-72914138 None:intergenic
GCCATTGGATCCCATCTCTA+TGG 0.360022 1_2:+72917256 Msa0090820:CDS
AGAGGAGGTGCTGGTGGTGG+TGG 0.360705 1_2:+72918291 Msa0090820:CDS
TCTTGTTGTTGTTGCATGTT+GGG 0.364031 1_2:-72917337 None:intergenic
ATCAATGCTGCACAATCATT+TGG 0.366618 1_2:+72918261 Msa0090820:CDS
CACAGATAAACCTTTCTCTT+AGG 0.370336 1_2:-72914273 None:intergenic
TCTTCAGAAAGCTGCTCAAA+TGG 0.372700 1_2:+72917801 Msa0090820:CDS
GGTGGTGGAAGTGGGAACTA+TGG 0.381676 1_2:+72917946 Msa0090820:CDS
GAAGGAACAAATTTCTTCAA+TGG 0.382802 1_2:+72917664 Msa0090820:CDS
GCAGCCGCCGCTAATCGGAC+TGG 0.392043 1_2:+72917400 Msa0090820:CDS
GGAAGTGGGAACTATGGTTT+TGG 0.392846 1_2:+72917952 Msa0090820:CDS
CATCATTAAACCTTGTTGTT+GGG 0.395369 1_2:-72917527 None:intergenic
AGTGGTGTTGTTGGAGGAGG+AGG 0.395753 1_2:+72918168 Msa0090820:CDS
CTGTTACTTGAAAGGAAATT+CGG 0.396306 1_2:-72917592 None:intergenic
GCAAACATGGTGAGAAGAAA+TGG 0.396336 1_2:+72914373 Msa0090820:CDS
GCATCATTAAACCTTGTTGT+TGG 0.396925 1_2:-72917528 None:intergenic
GGTGTAGGGCTTGGAAGAGG+AGG 0.397969 1_2:+72918081 Msa0090820:CDS
CAGCCACCAATTTCTCTAAC+TGG 0.400711 1_2:+72917232 Msa0090820:CDS
TCGGCGCAGCCGCCGCTAAT+CGG 0.400945 1_2:+72917395 Msa0090820:CDS
AGTGCTATCACCTCTGCATC+TGG 0.401274 1_2:-72914111 None:intergenic
AGAGAAATTGGTGGCTGTCT+TGG 0.401882 1_2:-72917226 None:intergenic
GGAAGAGGAGGTGCTGGTGG+TGG 0.401937 1_2:+72918288 Msa0090820:CDS
AAAAGCTTTGGAAACAATAC+TGG 0.403135 1_2:+72917871 Msa0090820:CDS
GATCAAAGTGGAGGAGGAGG+AGG 0.417269 1_2:+72918051 Msa0090820:CDS
CAGCCGCCGCTAATCGGACT+GGG 0.417417 1_2:+72917401 Msa0090820:CDS
TGATCCTAGCAGAGTGCAAA+TGG 0.420116 1_2:+72917924 Msa0090820:CDS
GGAGGAGGAAGAGGAGGTGC+TGG 0.428094 1_2:+72918282 Msa0090820:CDS
GTCTTGTTGTTGTTGCATGT+TGG 0.430394 1_2:-72917338 None:intergenic
GGTGTTGTTGGAGGAGGAGG+AGG 0.431211 1_2:+72918171 Msa0090820:CDS
TCATGAACAGAGTAACTTGC+AGG 0.442583 1_2:+72917984 Msa0090820:CDS
GCGTTCATCATGACCCTTCA+AGG 0.451309 1_2:+72914310 Msa0090820:CDS
GTGCAAATGGGTGGTGGAAG+TGG 0.451777 1_2:+72917937 Msa0090820:CDS
AGGGCACTTGGTGACCTCAC+TGG 0.452289 1_2:+72914330 Msa0090820:CDS
AATTTCTTCAATGGATCAGC+TGG 0.456222 1_2:+72917673 Msa0090820:CDS
CAGAGCCTTCTGTGATGCAT+TGG 0.460268 1_2:+72917192 Msa0090820:CDS
TTTGATCAAAGTGGAGGAGG+AGG 0.461762 1_2:+72918048 Msa0090820:CDS
CCAATAACAAAATCTATAAC+CGG 0.463076 1_2:-72921552 None:intergenic
CAATCATTTGGAGGAGGAAG+AGG 0.464548 1_2:+72918273 Msa0090820:CDS
AGTATGCTGTTCAATCTGAT+TGG 0.466037 1_2:+72914418 Msa0090820:CDS
ATTTCTCTAACTGGTGCCAT+TGG 0.468145 1_2:+72917241 Msa0090820:CDS
CTGTGATGCATTGGCTCAAG+AGG 0.473610 1_2:+72917201 Msa0090820:CDS
CGTTAGGTCTGAAAGTAGCC+TGG 0.474282 1_2:-72917447 None:intergenic
TGCTTGAGCTTCCATAGAGA+TGG 0.475619 1_2:-72917267 None:intergenic
GTAGGGCTTGGAAGAGGAGG+TGG 0.476945 1_2:+72918084 Msa0090820:CDS
CTTCAGAAAGCTGCTCAAAT+GGG 0.479620 1_2:+72917802 Msa0090820:CDS
TTTGTGAGGTATGCAACAAA+GGG 0.479716 1_2:+72914169 Msa0090820:CDS
ATGAATGTTATTGTTGAAGA+AGG 0.481652 1_2:-72917470 None:intergenic
ACTATCTCCCAAGACCCTAA+TGG 0.482980 1_2:+72914131 Msa0090820:CDS
AGAAGCATGAGTGGTGTTGT+TGG 0.483138 1_2:+72918159 Msa0090820:CDS
GCAACTTCAAGTAATGGAAA+TGG 0.483733 1_2:+72917826 Msa0090820:CDS
GGAGGAAGAGGAGGTGCTGG+TGG 0.484284 1_2:+72918285 Msa0090820:CDS
GATTGCTGTTGTTGCTATTG+TGG 0.486706 1_2:-72917558 None:intergenic
AGACCCTAATGGCAACAAAC+AGG 0.487796 1_2:+72914142 Msa0090820:CDS
TGATGAACGCATGTGGGCTC+AGG 0.492840 1_2:-72914297 None:intergenic
CAGTGGCTGAATTGCTGTGG+TGG 0.498172 1_2:-72917360 None:intergenic
TACAAAAGAGCCTAAGAGAA+AGG 0.500506 1_2:+72914263 Msa0090820:CDS
AACAGTAACATTAATGCTGC+TGG 0.504605 1_2:+72917745 Msa0090820:CDS
ACAGTCACACCTATATTCTC+TGG 0.505844 1_2:-72914466 None:intergenic
ATTAAACCTTGTTGTTGGGA+AGG 0.505891 1_2:-72917523 None:intergenic
GGGCACTTGGTGACCTCACT+GGG 0.506772 1_2:+72914331 Msa0090820:CDS
TTATTGTTGAAGAAGGCGTT+AGG 0.509288 1_2:-72917463 None:intergenic
ATGGGTGCAACTTCAAGTAA+TGG 0.513566 1_2:+72917820 Msa0090820:CDS
TGTTAGTACTGTTACTTGAA+AGG 0.514803 1_2:-72917600 None:intergenic
CATGACCCTTCAAGGGCACT+TGG 0.515364 1_2:+72914318 Msa0090820:CDS
GAAGAGGACACAATTTGCCT+TGG 0.516793 1_2:+72914223 Msa0090820:CDS
GGGCATTTGTGCAGCTACCT+GGG 0.522215 1_2:-72917317 None:intergenic
AGCAGAGTGCAAATGGGTGG+TGG 0.522557 1_2:+72917931 Msa0090820:CDS
GTCTTCTGCTTAAGCTTCCA+AGG 0.523295 1_2:-72914240 None:intergenic
AACAAACAGGTTTATTTGTG+AGG 0.525054 1_2:+72914155 Msa0090820:CDS
AGCATGAGTGGTGTTGTTGG+AGG 0.531782 1_2:+72918162 Msa0090820:CDS
AACTTGGCAGCTTCTTTGGA+AGG 0.532879 1_2:+72918222 Msa0090820:CDS
ATGAGTGGTGTTGTTGGAGG+AGG 0.534700 1_2:+72918165 Msa0090820:CDS
ATTTGTGAGGTATGCAACAA+AGG 0.537155 1_2:+72914168 Msa0090820:CDS
GCTGGTGGTGGTGGAGCAGG+AGG 0.537179 1_2:+72918300 Msa0090820:CDS
CCACCCATTTGCACTCTGCT+AGG 0.537342 1_2:-72917928 None:intergenic
GCTTGAGCTTCCATAGAGAT+GGG 0.544937 1_2:-72917266 None:intergenic
TGCTGTTCAATCTGATTGGA+AGG 0.548901 1_2:+72914422 Msa0090820:CDS
AAAACATTGCTGAAGAGTGA+TGG 0.549747 1_2:-72917709 None:intergenic
ATATTTGATCAAAGTGGAGG+AGG 0.551599 1_2:+72918045 Msa0090820:CDS
CACTTGAATGTGAATAATGA+AGG 0.553613 1_2:+72917646 Msa0090820:CDS
AACTCAGCATCTTCTGGTGG+CGG 0.555348 1_2:+72917901 Msa0090820:CDS
GTCCTCTTCTGTGAAGCTGT+AGG 0.557568 1_2:-72914209 None:intergenic
ACTTCAATATTTGATCAAAG+TGG 0.557815 1_2:+72918039 Msa0090820:CDS
TGCAAATGGGTGGTGGAAGT+GGG 0.558745 1_2:+72917938 Msa0090820:CDS
AACCTACAGCTTCACAGAAG+AGG 0.559175 1_2:+72914207 Msa0090820:CDS
AGGTCACCAAGTGCCCTTGA+AGG 0.560455 1_2:-72914324 None:intergenic
ACTGTGGAACTCTCTTCTCC+AGG 0.561096 1_2:+72914484 Msa0090820:CDS
GTTAGGTCTGAAAGTAGCCT+GGG 0.562635 1_2:-72917446 None:intergenic
AATGCTGCACAATCATTTGG+AGG 0.572623 1_2:+72918264 Msa0090820:CDS
AGAGCACAGTGATGCATATG+TGG 0.574545 1_2:+72921376 Msa0090820:three_prime_UTR
AAACACTACTCTCGCAAACA+TGG 0.582241 1_2:+72914360 Msa0090820:CDS
TGTGATGCATTGGCTCAAGA+GGG 0.582830 1_2:+72917202 Msa0090820:CDS
GCCACTGAAATCTTGAGACT+CGG 0.583339 1_2:+72917376 Msa0090820:CDS
CATGATCCTTCCCAACAACA+AGG 0.585888 1_2:+72917517 Msa0090820:CDS
TCAATATTTGATCAAAGTGG+AGG 0.596270 1_2:+72918042 Msa0090820:CDS
CTTGTGGCACCAGAGAATAT+AGG 0.598109 1_2:+72914457 Msa0090820:CDS
GATCCTAGCAGAGTGCAAAT+GGG 0.599256 1_2:+72917925 Msa0090820:CDS
TTGAGCCAATGCATCACAGA+AGG 0.600273 1_2:-72917197 None:intergenic
AAATTGCCCAGTCCGATTAG+CGG 0.601231 1_2:-72917407 None:intergenic
CATGGGTCTAAGTATAGCCC+AGG 0.601919 1_2:+72917300 Msa0090820:CDS
TCCATAGAGATGGGATCCAA+TGG 0.605983 1_2:-72917257 None:intergenic
GGTCACCAAGTGCCCTTGAA+GGG 0.610749 1_2:-72914323 None:intergenic
GCTGCACAATCATTTGGAGG+AGG 0.614779 1_2:+72918267 Msa0090820:CDS
CGTTCATCATGACCCTTCAA+GGG 0.615083 1_2:+72914311 Msa0090820:CDS
TCATTTGGAGGAGGAAGAGG+AGG 0.625621 1_2:+72918276 Msa0090820:CDS
GGAAACAGATCCAGATGCAG+AGG 0.628242 1_2:+72914101 Msa0090820:CDS
TCAAGCAACAACAACACCAT+GGG 0.629958 1_2:+72917283 Msa0090820:CDS
GCACCAGTTAGAGAAATTGG+TGG 0.631481 1_2:-72917235 None:intergenic
AAGGCACATTCTAAGACTTG+TGG 0.632080 1_2:+72914441 Msa0090820:CDS
CTGGGCTATACTTAGACCCA+TGG 0.634660 1_2:-72917299 None:intergenic
CTCAAGCAACAACAACACCA+TGG 0.635294 1_2:+72917282 Msa0090820:CDS
GCCGAGTCTCAAGATTTCAG+TGG 0.635884 1_2:-72917377 None:intergenic
TGTTGTTGGGAAGGATCATG+AGG 0.647582 1_2:-72917514 None:intergenic
AGGGTCATGATGAACGCATG+TGG 0.655416 1_2:-72914304 None:intergenic
TTGCCCAGTCCGATTAGCGG+CGG 0.658859 1_2:-72917404 None:intergenic
GAGATTGTGAGAAGCATGAG+TGG 0.666823 1_2:+72918150 Msa0090820:CDS
AGTAACTCAGCATCTTCTGG+TGG 0.670356 1_2:+72917898 Msa0090820:CDS
TTTCAGTGGCTGAATTGCTG+TGG 0.673776 1_2:-72917363 None:intergenic
GAGCACAGTGATGCATATGT+GGG 0.676016 1_2:+72921377 Msa0090820:three_prime_UTR
AGAGAATATAGGTGTGACTG+TGG 0.676276 1_2:+72914468 Msa0090820:CDS
GGGTCATGATGAACGCATGT+GGG 0.680517 1_2:-72914303 None:intergenic
TTAGGTCTGAAAGTAGCCTG+GGG 0.680570 1_2:-72917445 None:intergenic
CCTAGCAGAGTGCAAATGGG+TGG 0.714810 1_2:+72917928 Msa0090820:CDS
AGTGTTTCTTAATCCCAGTG+AGG 0.718099 1_2:-72914344 None:intergenic
TAGGTCTGAAAGTAGCCTGG+GGG 0.734494 1_2:-72917444 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTATTTTTTTTATATTTT+AGG + chr1_2:72919893-72919912 Msa0090820:intron 0.0%
!!! ATTATTTTTTTTATATTTTA+GGG + chr1_2:72919894-72919913 Msa0090820:intron 0.0%
!! TAAAATACTATATAATTAGA+AGG - chr1_2:72916656-72916675 None:intergenic 10.0%
!!! ATAGTATTTTATTTTTTATG+AGG + chr1_2:72916665-72916684 Msa0090820:intron 10.0%
!!! GTTTTACTTTATTTTTATAT+AGG + chr1_2:72918421-72918440 Msa0090820:intron 10.0%
!!! TATAAAATATTTCTTCTTTT+AGG - chr1_2:72918486-72918505 None:intergenic 10.0%
!! ATATGGTATAATATATAAAA+GGG - chr1_2:72918627-72918646 None:intergenic 10.0%
!!! GTTTTTAAAATACTATTTTA+AGG + chr1_2:72919204-72919223 Msa0090820:intron 10.0%
!!! TAAAAATATTTTTATGATTG+AGG - chr1_2:72919639-72919658 None:intergenic 10.0%
!!! AATCATAAAAATATTTTTAC+TGG + chr1_2:72919640-72919659 Msa0090820:intron 10.0%
!!! TTTTTTTTTTAATCAAAAAG+AGG - chr1_2:72919939-72919958 None:intergenic 10.0%
!! AAAAAAAAGAAACTTATATT+AGG + chr1_2:72919951-72919970 Msa0090820:intron 10.0%
!!! TTCTTTTTTTGATATATATT+TGG + chr1_2:72920138-72920157 Msa0090820:intron 10.0%
!! TAAGAAAAATGTATAAATAA+AGG + chr1_2:72920381-72920400 Msa0090820:intron 10.0%
!! AAGAAAAATGTATAAATAAA+GGG + chr1_2:72920382-72920401 Msa0090820:intron 10.0%
!! AAGAAAAATGTATAAATAAA+GGG - chr1_2:72920382-72920401 None:intergenic 10.0%
!! TAAGAAAAATGTATAAATAA+AGG - chr1_2:72920381-72920400 None:intergenic 10.0%
!!! ATTTTATTTTATTTTTTTGG+GGG - chr1_2:72921450-72921469 None:intergenic 10.0%
!!! TTTTGTGAATGAAAAATAAT+GGG - chr1_2:72915521-72915540 None:intergenic 15.0%
!!! GCATAAAATTTTGATTAAAT+TGG - chr1_2:72915644-72915663 None:intergenic 15.0%
!! TAAGAATATATTCAATGTTA+AGG - chr1_2:72915960-72915979 None:intergenic 15.0%
!!! AATAAATTTGTTGAAAATGA+TGG - chr1_2:72916391-72916410 None:intergenic 15.0%
!! CATATGGTATAATATATAAA+AGG - chr1_2:72918628-72918647 None:intergenic 15.0%
!!! TAAGAAAAGTGTATAAATAA+AGG + chr1_2:72918894-72918913 Msa0090820:intron 15.0%
!!! AAGAAAAGTGTATAAATAAA+GGG + chr1_2:72918895-72918914 Msa0090820:intron 15.0%
!! TATTTAGTGTTATATTGTAT+TGG + chr1_2:72918959-72918978 Msa0090820:intron 15.0%
!! ATTTAGTGTTATATTGTATT+GGG + chr1_2:72918960-72918979 Msa0090820:intron 15.0%
!!! TCTACAATTTTAACAAATTT+TGG + chr1_2:72919109-72919128 Msa0090820:intron 15.0%
!!! GTAAATACTCTTTTATATAT+TGG + chr1_2:72919405-72919424 Msa0090820:intron 15.0%
!!! TAATACTAATTTAGTTTAGA+AGG - chr1_2:72919787-72919806 None:intergenic 15.0%
!! AAGAAAGTAAAAAATTGAAA+AGG - chr1_2:72920123-72920142 None:intergenic 15.0%
!!! TTTTTTGATATATATTTGGT+TGG + chr1_2:72920142-72920161 Msa0090820:intron 15.0%
!! AGAAAAATGTATAAATAAAG+GGG + chr1_2:72920383-72920402 Msa0090820:intron 15.0%
!! TATTTAGTGTTATATTGTAT+TGG + chr1_2:72918959-72918978 Msa0090820:intron 15.0%
!! ATTTAGTGTTATATTGTATT+GGG + chr1_2:72918960-72918979 Msa0090820:intron 15.0%
!!! TTTTCTATGTTACTATATTT+GGG + chr1_2:72920579-72920598 Msa0090820:intron 15.0%
!! ATTTAGTGTTATATTGTATT+GGG - chr1_2:72918960-72918979 None:intergenic 15.0%
!! TATTTAGTGTTATATTGTAT+TGG - chr1_2:72918959-72918978 None:intergenic 15.0%
!! AGAAAAATGTATAAATAAAG+GGG - chr1_2:72920383-72920402 None:intergenic 15.0%
!!! TTAATTAGATCAAGTTTTAA+TGG - chr1_2:72921348-72921367 None:intergenic 15.0%
!!! ATTTTATTAGATTTTGCTAT+TGG + chr1_2:72921505-72921524 Msa0090820:three_prime_UTR 15.0%
!! AAATAACTGTTTGACAAAAA+TGG - chr1_2:72914681-72914700 None:intergenic 20.0%
!! TCTTTATTATCTAGTGAATT+TGG + chr1_2:72914819-72914838 Msa0090820:intron 20.0%
!!! TTGATTTGATTAAGATTCTA+TGG + chr1_2:72914886-72914905 Msa0090820:intron 20.0%
!!! TGTTTCAATATTTGTTAGTA+CGG + chr1_2:72914932-72914951 Msa0090820:intron 20.0%
!!! ATGGTTTTTGAAGTTTATTT+TGG + chr1_2:72915406-72915425 Msa0090820:intron 20.0%
!!! GTTTTGTGAATGAAAAATAA+TGG - chr1_2:72915522-72915541 None:intergenic 20.0%
!! AAGAAACACTAAAATTATGT+TGG - chr1_2:72915593-72915612 None:intergenic 20.0%
!!! TTGAATCGTATGATTTTAAT+TGG + chr1_2:72915766-72915785 Msa0090820:intron 20.0%
!!! TTATTGTCTTTTACTTGAAA+AGG + chr1_2:72916268-72916287 Msa0090820:intron 20.0%
!! TAGTAATCTATGTATAATTC+AGG + chr1_2:72916305-72916324 Msa0090820:intron 20.0%
!!! TTTACTTTTTAGGATAAAAC+TGG - chr1_2:72916807-72916826 None:intergenic 20.0%
!! TGAAGTCTCTTAAAAAAAAA+TGG + chr1_2:72916857-72916876 Msa0090820:intron 20.0%
!! TAACTAGGTATAATAATAGT+TGG - chr1_2:72917030-72917049 None:intergenic 20.0%
!! ACAAGAAAAAATTGTATGAA+AGG - chr1_2:72917062-72917081 None:intergenic 20.0%
!! TCACATAATGAATATTGTAA+TGG + chr1_2:72917100-72917119 Msa0090820:intron 20.0%
!!! AGAAAAGTGTATAAATAAAG+GGG + chr1_2:72918896-72918915 Msa0090820:intron 20.0%
!! AGTTGTATTGAAAATTGAAA+TGG + chr1_2:72918992-72919011 Msa0090820:intron 20.0%
!! GTTGTATTGAAAATTGAAAT+GGG + chr1_2:72918993-72919012 Msa0090820:intron 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG + chr1_2:72919029-72919048 Msa0090820:intron 20.0%
!! GATTTAACAATTATGATTGA+TGG - chr1_2:72919284-72919303 None:intergenic 20.0%
!! ATATATACCTTAAAGTCAAA+TGG + chr1_2:72919342-72919361 Msa0090820:intron 20.0%
!! AAAGTGGAATATATTGTATT+GGG + chr1_2:72918919-72918938 Msa0090820:intron 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG + chr1_2:72919029-72919048 Msa0090820:intron 20.0%
!!! CTTTTCTATGTTACTATATT+TGG + chr1_2:72920578-72920597 Msa0090820:intron 20.0%
!! TTTCTATGTTACTATATTTG+GGG + chr1_2:72920580-72920599 Msa0090820:intron 20.0%
!!! TAGCTTAATTTTATCTAATC+AGG + chr1_2:72920612-72920631 Msa0090820:intron 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG - chr1_2:72919029-72919048 None:intergenic 20.0%
!! AGTTGTATTGAAAATTGAAA+TGG - chr1_2:72918992-72919011 None:intergenic 20.0%
!! AAAGTGGAATATATTGTATT+AGG - chr1_2:72918919-72918938 None:intergenic 20.0%
!!! TAACCATGTAATTTTTGAAA+CGG + chr1_2:72921269-72921288 Msa0090820:intron 20.0%
!! ACTTGATCTAATTAAAGATT+TGG + chr1_2:72921353-72921372 Msa0090820:three_prime_UTR 20.0%
!!! TATTAGTTTCAAGATTTTCA+TGG + chr1_2:72921479-72921498 Msa0090820:three_prime_UTR 20.0%
!!! GGATATTTTAATTTAACTAC+CGG + chr1_2:72921533-72921552 Msa0090820:three_prime_UTR 20.0%
! GAATTGTTATATATGTTACC+TGG - chr1_2:72914505-72914524 None:intergenic 25.0%
!!! ACACACATGTTTTGTTAATA+TGG + chr1_2:72914541-72914560 Msa0090820:intron 25.0%
!!! TATTTTTTTCAACCACGAAA+TGG + chr1_2:72914696-72914715 Msa0090820:intron 25.0%
!!! ATTTTTTTCAACCACGAAAT+GGG + chr1_2:72914697-72914716 Msa0090820:intron 25.0%
! TATTATCTAGTGAATTTGGT+TGG + chr1_2:72914823-72914842 Msa0090820:intron 25.0%
!! TGATTAAGATTCTATGGTTT+TGG + chr1_2:72914892-72914911 Msa0090820:intron 25.0%
! ATGAGACTCGTATAATTATA+AGG - chr1_2:72915056-72915075 None:intergenic 25.0%
! AGCATAAGAGTAGAATATTA+TGG + chr1_2:72915121-72915140 Msa0090820:intron 25.0%
! GAATAGGATGAAAAAGAAAT+GGG - chr1_2:72915203-72915222 None:intergenic 25.0%
! TGAATAGGATGAAAAAGAAA+TGG - chr1_2:72915204-72915223 None:intergenic 25.0%
! AATAAACTTCAAAAACCATG+TGG - chr1_2:72915405-72915424 None:intergenic 25.0%
!!! ACTATTTTCTTGTTTCTCAT+AGG + chr1_2:72915429-72915448 Msa0090820:intron 25.0%
!!! CTCATAGGTTTTTTATAACA+TGG + chr1_2:72915444-72915463 Msa0090820:intron 25.0%
! CTCATTAAACATGATTAGAT+TGG - chr1_2:72915489-72915508 None:intergenic 25.0%
! CAATCTAATCATGTTTAATG+AGG + chr1_2:72915487-72915506 Msa0090820:intron 25.0%
! TTATATGTTTGAAGACAGAA+TGG + chr1_2:72915614-72915633 Msa0090820:intron 25.0%
! TATATGTTTGAAGACAGAAT+GGG + chr1_2:72915615-72915634 Msa0090820:intron 25.0%
!! TCAAAATTTTATGCAATCAC+CGG + chr1_2:72915650-72915669 Msa0090820:intron 25.0%
!!! TGTTAAGGAATTGATAATGT+AGG - chr1_2:72915945-72915964 None:intergenic 25.0%
! GTAATTAATTTCATTCCACT+TGG + chr1_2:72916077-72916096 Msa0090820:intron 25.0%
! AAGTATCACATTCTTTCATT+TGG + chr1_2:72916212-72916231 Msa0090820:intron 25.0%
! ATACATAGATTACTAGAAGT+GGG - chr1_2:72916300-72916319 None:intergenic 25.0%
! TATACATAGATTACTAGAAG+TGG - chr1_2:72916301-72916320 None:intergenic 25.0%
!! AAAAGCACATAAAATGTACT+AGG - chr1_2:72916483-72916502 None:intergenic 25.0%
!! TTTAATCATTAGTTTCTCAG+AGG - chr1_2:72916517-72916536 None:intergenic 25.0%
!!! TTTTTTCCTATGATTCTAGT+TGG + chr1_2:72916598-72916617 Msa0090820:intron 25.0%
!!! TTTTTCCTATGATTCTAGTT+GGG + chr1_2:72916599-72916618 Msa0090820:intron 25.0%
!! GAAATTGTTGTTAATAACAG+CGG + chr1_2:72916886-72916905 Msa0090820:intron 25.0%
! ATACGAGAACAATTGTAAAA+TGG - chr1_2:72916915-72916934 None:intergenic 25.0%
! GAAAGGAAAATCATTTAACT+AGG - chr1_2:72917045-72917064 None:intergenic 25.0%
! ATGAATGTTATTGTTGAAGA+AGG - chr1_2:72917473-72917492 None:intergenic 25.0%
! ACTTCAATATTTGATCAAAG+TGG + chr1_2:72918039-72918058 Msa0090820:CDS 25.0%
! ATGATTACATTGTGATTAGT+GGG + chr1_2:72918656-72918675 Msa0090820:intron 25.0%
! TAAAAAAGAGCAATGTGAAT+AGG + chr1_2:72918767-72918786 Msa0090820:intron 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG + chr1_2:72919028-72919047 Msa0090820:intron 25.0%
! ACATTGTAAATACCTTTCAA+CGG - chr1_2:72919252-72919271 None:intergenic 25.0%
! AACAATTATGATTGATGGAA+TGG - chr1_2:72919279-72919298 None:intergenic 25.0%
! AATGAGACTTATATTTAGAG+AGG + chr1_2:72919516-72919535 Msa0090820:intron 25.0%
!! AGAAATAACATTTTCCTTTG+AGG + chr1_2:72919563-72919582 Msa0090820:intron 25.0%
! ATATCTACCTTAAAGTCAAA+TGG + chr1_2:72919676-72919695 Msa0090820:intron 25.0%
! TATAATATGCATCCATCTAT+TGG + chr1_2:72919822-72919841 Msa0090820:intron 25.0%
! AAGAAACTTATATTAGGAGT+AGG + chr1_2:72919957-72919976 Msa0090820:intron 25.0%
! GTTTATTGAATTTAACACGA+AGG - chr1_2:72920308-72920327 None:intergenic 25.0%
! GAAAGTGGAATATATTGTAT+TGG + chr1_2:72918918-72918937 Msa0090820:intron 25.0%
!! TTGAAATGAGTCAGTTATTT+TGG + chr1_2:72920493-72920512 Msa0090820:intron 25.0%
!!! TGAAATGAGTCAGTTATTTT+GGG + chr1_2:72920494-72920513 Msa0090820:intron 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG + chr1_2:72919028-72919047 Msa0090820:intron 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG - chr1_2:72919028-72919047 None:intergenic 25.0%
!!! TGAAATGGATCAGTTATTTT+GGG - chr1_2:72920742-72920761 None:intergenic 25.0%
!! TTGAAATGGATCAGTTATTT+TGG - chr1_2:72920743-72920762 None:intergenic 25.0%
! TAAATAATAGACCTAAGTAG+TGG - chr1_2:72921074-72921093 None:intergenic 25.0%
! CTTAGGTCTATTATTTAGAT+TGG + chr1_2:72921077-72921096 Msa0090820:intron 25.0%
! TTACCGTTTCAAAAATTACA+TGG - chr1_2:72921275-72921294 None:intergenic 25.0%
! GTAATTAAGAATGACGATTA+TGG + chr1_2:72921291-72921310 Msa0090820:intron 25.0%
! AAGAAGCTTCAATAAAATTC+AGG - chr1_2:72921407-72921426 None:intergenic 25.0%
!!! TATTTTATTTTTTTGGGGGA+GGG - chr1_2:72921446-72921465 None:intergenic 25.0%
!!! TTATTTTATTTTTTTGGGGG+AGG - chr1_2:72921447-72921466 None:intergenic 25.0%
!!! TAGATTTTGCTATTGGATAA+TGG + chr1_2:72921512-72921531 Msa0090820:three_prime_UTR 25.0%
! CCAATAACAAAATCTATAAC+CGG - chr1_2:72921555-72921574 None:intergenic 25.0%
AACAAACAGGTTTATTTGTG+AGG + chr1_2:72914155-72914174 Msa0090820:CDS 30.0%
CAGTAGAATAGACTGTAATA+AGG + chr1_2:72914592-72914611 Msa0090820:intron 30.0%
AGAACAAATGTGATGTTGTT+TGG + chr1_2:72914721-72914740 Msa0090820:intron 30.0%
! AAATGTGATGTTGTTTGGTT+TGG + chr1_2:72914726-72914745 Msa0090820:intron 30.0%
!! ATGTTGTTTGGTTTGGTTTA+GGG + chr1_2:72914733-72914752 Msa0090820:intron 30.0%
!!! AAGATTCTATGGTTTTGGTA+TGG + chr1_2:72914897-72914916 Msa0090820:intron 30.0%
! AATATTTGTTAGTACGGTGT+GGG + chr1_2:72914938-72914957 Msa0090820:intron 30.0%
TCACAAACAAAAAACACACA+CGG + chr1_2:72915015-72915034 Msa0090820:intron 30.0%
!! TACTCTTATGCTTTTTGACA+AGG - chr1_2:72915113-72915132 None:intergenic 30.0%
! ACCTTTTTCTGATTTTACCT+AGG + chr1_2:72915156-72915175 Msa0090820:intron 30.0%
TCCTAGGTAAAATCAGAAAA+AGG - chr1_2:72915160-72915179 None:intergenic 30.0%
!!! TACGATCTTTGTTTTCTTCT+TGG + chr1_2:72915258-72915277 Msa0090820:intron 30.0%
!!! ATCTTTGTTTTCTTCTTGGT+TGG + chr1_2:72915262-72915281 Msa0090820:intron 30.0%
GTACACAGAAAATATAGAGA+GGG - chr1_2:72915365-72915384 None:intergenic 30.0%
AGTACACAGAAAATATAGAG+AGG - chr1_2:72915366-72915385 None:intergenic 30.0%
!!! TTTTGCTTTTTTCTTCCACA+TGG + chr1_2:72915387-72915406 Msa0090820:intron 30.0%
AACCTAAAACCTTATTCACA+TGG + chr1_2:72915545-72915564 Msa0090820:intron 30.0%
! AACCATGTGAATAAGGTTTT+AGG - chr1_2:72915550-72915569 None:intergenic 30.0%
AATTGGTTACCTTTGATCTT+TGG + chr1_2:72915783-72915802 Msa0090820:intron 30.0%
! TTTTGCAATCCAAAGATCAA+AGG - chr1_2:72915795-72915814 None:intergenic 30.0%
! TTTGACAAGACTTTTCTCAT+TGG - chr1_2:72915841-72915860 None:intergenic 30.0%
TGTGATACTTAATTAACCCA+AGG - chr1_2:72916202-72916221 None:intergenic 30.0%
CACATGTCTTGATTTCAAAA+GGG - chr1_2:72916770-72916789 None:intergenic 30.0%
TCACATGTCTTGATTTCAAA+AGG - chr1_2:72916771-72916790 None:intergenic 30.0%
!! CATCATTAAACCTTGTTGTT+GGG - chr1_2:72917530-72917549 None:intergenic 30.0%
! CTGTTACTTGAAAGGAAATT+CGG - chr1_2:72917595-72917614 None:intergenic 30.0%
! TGTTAGTACTGTTACTTGAA+AGG - chr1_2:72917603-72917622 None:intergenic 30.0%
CACTTGAATGTGAATAATGA+AGG + chr1_2:72917646-72917665 Msa0090820:CDS 30.0%
GAAGGAACAAATTTCTTCAA+TGG + chr1_2:72917664-72917683 Msa0090820:CDS 30.0%
!! AAAAGCTTTGGAAACAATAC+TGG + chr1_2:72917871-72917890 Msa0090820:CDS 30.0%
TCAATATTTGATCAAAGTGG+AGG + chr1_2:72918042-72918061 Msa0090820:CDS 30.0%
TCAATTACCTATAGTAACCT+AGG + chr1_2:72918388-72918407 Msa0090820:intron 30.0%
TAACATTCCTAGGTTACTAT+AGG - chr1_2:72918398-72918417 None:intergenic 30.0%
GTAAAACATGTAACATTCCT+AGG - chr1_2:72918408-72918427 None:intergenic 30.0%
!! TTTCATTAACTTGTGCCTTA+AGG + chr1_2:72918585-72918604 Msa0090820:intron 30.0%
!! TTCATTAACTTGTGCCTTAA+GGG + chr1_2:72918586-72918605 Msa0090820:intron 30.0%
GTAATCATCACATGATCATA+TGG - chr1_2:72918644-72918663 None:intergenic 30.0%
GATGATTACATTGTGATTAG+TGG + chr1_2:72918655-72918674 Msa0090820:intron 30.0%
TGATTACATTGTGATTAGTG+GGG + chr1_2:72918657-72918676 Msa0090820:intron 30.0%
AGCAATGTGAATAGGAATTT+AGG + chr1_2:72918775-72918794 Msa0090820:intron 30.0%
GCAATGTGAATAGGAATTTA+GGG + chr1_2:72918776-72918795 Msa0090820:intron 30.0%
AATTGACATTAATTCCACAC+AGG + chr1_2:72918807-72918826 Msa0090820:intron 30.0%
TGTATAAATAAAGGGGAAAG+TGG + chr1_2:72918903-72918922 Msa0090820:intron 30.0%
! TTGAAATGGGTCAGTTATTT+TGG + chr1_2:72919006-72919025 Msa0090820:intron 30.0%
!! TGAAATGGGTCAGTTATTTT+GGG + chr1_2:72919007-72919026 Msa0090820:intron 30.0%
TATATGTAACTACCGTTGAA+AGG + chr1_2:72919237-72919256 Msa0090820:intron 30.0%
! CAATCAACCATTTGACTTTA+AGG - chr1_2:72919352-72919371 None:intergenic 30.0%
! AATAACTTGTATCCATCCAT+TGG + chr1_2:72919488-72919507 Msa0090820:intron 30.0%
TAAGTCTCATTCTAAACCAA+TGG - chr1_2:72919507-72919526 None:intergenic 30.0%
! CAATCAACCATTTGACTTTA+AGG - chr1_2:72919352-72919371 None:intergenic 30.0%
TCTCATTCTAAACCAATAGA+TGG - chr1_2:72919837-72919856 None:intergenic 30.0%
TTGATATATATTTGGTTGGC+TGG + chr1_2:72920146-72920165 Msa0090820:intron 30.0%
TATTTGTTCAGACACAAGTT+TGG - chr1_2:72920196-72920215 None:intergenic 30.0%
ATTTGTGTGACAAATGTATG+AGG - chr1_2:72920253-72920272 None:intergenic 30.0%
ATTGAATTTAACACGAAGGA+AGG - chr1_2:72920304-72920323 None:intergenic 30.0%
TGTATAAATAAAGGGGAAAG+TGG + chr1_2:72918903-72918922 Msa0090820:intron 30.0%
TGTATAAATAAAGGGGAAAG+TGG - chr1_2:72918903-72918922 None:intergenic 30.0%
! AAAAAGAGTACAAGAGAATG+CGG - chr1_2:72921121-72921140 None:intergenic 30.0%
TAAGAATGACGATTATGGTT+TGG + chr1_2:72921296-72921315 Msa0090820:intron 30.0%
!!! ATTTTATTTTTTTGGGGGAG+GGG - chr1_2:72921445-72921464 None:intergenic 30.0%
!! CCGGTTATAGATTTTGTTAT+TGG + chr1_2:72921552-72921571 Msa0090820:three_prime_UTR 30.0%
! AAACCTGTTTGTTGCCATTA+GGG - chr1_2:72914148-72914167 None:intergenic 35.0%
! TAAACCTGTTTGTTGCCATT+AGG - chr1_2:72914149-72914168 None:intergenic 35.0%
ATTTGTGAGGTATGCAACAA+AGG + chr1_2:72914168-72914187 Msa0090820:CDS 35.0%
TTTGTGAGGTATGCAACAAA+GGG + chr1_2:72914169-72914188 Msa0090820:CDS 35.0%
TACAAAAGAGCCTAAGAGAA+AGG + chr1_2:72914263-72914282 Msa0090820:CDS 35.0%
CACAGATAAACCTTTCTCTT+AGG - chr1_2:72914276-72914295 None:intergenic 35.0%
AGTATGCTGTTCAATCTGAT+TGG + chr1_2:72914418-72914437 Msa0090820:CDS 35.0%
!! GATGTTGTTTGGTTTGGTTT+AGG + chr1_2:72914732-72914751 Msa0090820:intron 35.0%
TTCTTCAAGTGACTATAGAG+AGG + chr1_2:72914778-72914797 Msa0090820:intron 35.0%
!!! TCTATGGTTTTGGTATGGTT+TGG + chr1_2:72914902-72914921 Msa0090820:intron 35.0%
! CAATATTTGTTAGTACGGTG+TGG + chr1_2:72914937-72914956 Msa0090820:intron 35.0%
! TTTTCAGAGATCATTCACGT+GGG - chr1_2:72914989-72915008 None:intergenic 35.0%
!! AAAATGAAGCACTGTTTCCT+AGG - chr1_2:72915176-72915195 None:intergenic 35.0%
!! GATTAGATTGGTCGTGATTT+TGG - chr1_2:72915477-72915496 None:intergenic 35.0%
GAACTTGAACCATGTGAATA+AGG - chr1_2:72915557-72915576 None:intergenic 35.0%
TAAAATTATGTTGGTCCGAG+TGG - chr1_2:72915584-72915603 None:intergenic 35.0%
ACGATCACAAATCTTTCTAC+CGG - chr1_2:72915672-72915691 None:intergenic 35.0%
! ACACGCAAATTTTTGTCCTT+GGG + chr1_2:72916183-72916202 Msa0090820:intron 35.0%
AATTGCCCAACTAGAATCAT+AGG - chr1_2:72916607-72916626 None:intergenic 35.0%
TCTTGATTTCAAAAGGGATG+GGG - chr1_2:72916764-72916783 None:intergenic 35.0%
GTCTTGATTTCAAAAGGGAT+GGG - chr1_2:72916765-72916784 None:intergenic 35.0%
TGTCTTGATTTCAAAAGGGA+TGG - chr1_2:72916766-72916785 None:intergenic 35.0%
AGAGACTTCAAATCGATATG+AGG - chr1_2:72916847-72916866 None:intergenic 35.0%
GTAAATGTGATGAATACTGC+AGG + chr1_2:72917149-72917168 Msa0090820:intron 35.0%
!! TCTTGTTGTTGTTGCATGTT+GGG - chr1_2:72917340-72917359 None:intergenic 35.0%
!! TTATTGTTGAAGAAGGCGTT+AGG - chr1_2:72917466-72917485 None:intergenic 35.0%
!!! TGAGGAACAAAGTTTTGGTT+TGG - chr1_2:72917499-72917518 None:intergenic 35.0%
! GATCATGAGGAACAAAGTTT+TGG - chr1_2:72917504-72917523 None:intergenic 35.0%
!! ATTAAACCTTGTTGTTGGGA+AGG - chr1_2:72917526-72917545 None:intergenic 35.0%
! GCATCATTAAACCTTGTTGT+TGG - chr1_2:72917531-72917550 None:intergenic 35.0%
AATTTCTTCAATGGATCAGC+TGG + chr1_2:72917673-72917692 Msa0090820:CDS 35.0%
AAAACATTGCTGAAGAGTGA+TGG - chr1_2:72917712-72917731 None:intergenic 35.0%
AATGTTACTGTTTCCTCCTT+GGG - chr1_2:72917737-72917756 None:intergenic 35.0%
TAATGTTACTGTTTCCTCCT+TGG - chr1_2:72917738-72917757 None:intergenic 35.0%
AACAGTAACATTAATGCTGC+TGG + chr1_2:72917745-72917764 Msa0090820:CDS 35.0%
! GCAACTTCAAGTAATGGAAA+TGG + chr1_2:72917826-72917845 Msa0090820:CDS 35.0%
ACTTCTCTTCTCAAAAGCTT+TGG + chr1_2:72917859-72917878 Msa0090820:CDS 35.0%
ATATTTGATCAAAGTGGAGG+AGG + chr1_2:72918045-72918064 Msa0090820:CDS 35.0%
!!! TTTTAACTTGGCAGCTTCTT+TGG + chr1_2:72918218-72918237 Msa0090820:CDS 35.0%
ATCAATGCTGCACAATCATT+TGG + chr1_2:72918261-72918280 Msa0090820:CDS 35.0%
AGCATCATCTTCCTACTAAA+AGG + chr1_2:72918335-72918354 Msa0090820:exon 35.0%
TTTCTTAACATGTGCCCTAA+GGG - chr1_2:72918463-72918482 None:intergenic 35.0%
!! AATGTTAACTTGTGCCCTTA+AGG - chr1_2:72918603-72918622 None:intergenic 35.0%
GATTACATTGTGATTAGTGG+GGG + chr1_2:72918658-72918677 Msa0090820:intron 35.0%
CAAAGTAGGTCAATTATACC+GGG - chr1_2:72918859-72918878 None:intergenic 35.0%
CCAAAGTAGGTCAATTATAC+CGG - chr1_2:72918860-72918879 None:intergenic 35.0%
TCTGTGTGAAAAACCAAAGT+AGG - chr1_2:72918873-72918892 None:intergenic 35.0%
AGAAAATGGGTCAGTTATTC+CGG + chr1_2:72919042-72919061 Msa0090820:intron 35.0%
TCTCATTCTAAACCAATGGA+TGG - chr1_2:72919503-72919522 None:intergenic 35.0%
GTAGGTACATATATCCTCAA+AGG - chr1_2:72919580-72919599 None:intergenic 35.0%
TATATGTACCTACCGTTGAA+AGG + chr1_2:72919587-72919606 Msa0090820:intron 35.0%
ACCTTGTAAATGCCTTTCAA+CGG - chr1_2:72919602-72919621 None:intergenic 35.0%
!! ATCAAAAAGAGGTTGATGCA+AGG - chr1_2:72919928-72919947 None:intergenic 35.0%
! GTGATAAAAAAGTGTGTGTG+TGG + chr1_2:72920025-72920044 Msa0090820:intron 35.0%
AATTTAACACGAAGGAAGGA+AGG - chr1_2:72920300-72920319 None:intergenic 35.0%
AGAAAATGGGTCAGTTATTC+CGG + chr1_2:72919042-72919061 Msa0090820:intron 35.0%
AGAAAATGGGTCAGTTATTC+CGG - chr1_2:72919042-72919061 None:intergenic 35.0%
AATCTGTGTGAAATGAGCTA+AGG + chr1_2:72920874-72920893 Msa0090820:intron 35.0%
ATCTGTGTGAAATGAGCTAA+GGG + chr1_2:72920875-72920894 Msa0090820:intron 35.0%
AGCTAAGGGGTCAAATAAAT+TGG + chr1_2:72920889-72920908 Msa0090820:intron 35.0%
GCTAAGGGGTCAAATAAATT+GGG + chr1_2:72920890-72920909 Msa0090820:intron 35.0%
TAATAAGTACTCTGCACTCA+TGG - chr1_2:72921185-72921204 None:intergenic 35.0%
!!! ATTATGGTTTGGCTTTTTGC+AGG + chr1_2:72921307-72921326 Msa0090820:intron 35.0%
!!! TTATGGTTTGGCTTTTTGCA+GGG + chr1_2:72921308-72921327 Msa0090820:intron 35.0%
!! GATCAAGTTTTAATGGAGCA+TGG - chr1_2:72921341-72921360 None:intergenic 35.0%
!!! TTTTATTTTTTTGGGGGAGG+GGG - chr1_2:72921444-72921463 None:intergenic 35.0%
TTTGTTGCCATTAGGGTCTT+GGG - chr1_2:72914141-72914160 None:intergenic 40.0%
AGTGTTTCTTAATCCCAGTG+AGG - chr1_2:72914347-72914366 None:intergenic 40.0%
AAACACTACTCTCGCAAACA+TGG + chr1_2:72914360-72914379 Msa0090820:CDS 40.0%
GCAAACATGGTGAGAAGAAA+TGG + chr1_2:72914373-72914392 Msa0090820:CDS 40.0%
TGCTGTTCAATCTGATTGGA+AGG + chr1_2:72914422-72914441 Msa0090820:CDS 40.0%
!! AAGGCACATTCTAAGACTTG+TGG + chr1_2:72914441-72914460 Msa0090820:CDS 40.0%
ACAGTCACACCTATATTCTC+TGG - chr1_2:72914469-72914488 None:intergenic 40.0%
AGAGAATATAGGTGTGACTG+TGG + chr1_2:72914468-72914487 Msa0090820:CDS 40.0%
AAACATGTGTGTGTGTGTGA+AGG - chr1_2:72914533-72914552 None:intergenic 40.0%
CATTTGTTCTTCCCATTTCG+TGG - chr1_2:72914711-72914730 None:intergenic 40.0%
! GTTTTCAGAGATCATTCACG+TGG - chr1_2:72914990-72915009 None:intergenic 40.0%
CAAACAAAAAACACACACGG+AGG + chr1_2:72915018-72915037 Msa0090820:intron 40.0%
AAGGAAAGAGAAAGAGAGAG+AGG - chr1_2:72915094-72915113 None:intergenic 40.0%
AACAACACCACACAACTTCA+TGG - chr1_2:72915239-72915258 None:intergenic 40.0%
!! ATGAAAAGAAGCACCTGCAA+GGG - chr1_2:72915311-72915330 None:intergenic 40.0%
! GGTTCAAGTTCAATTCCACT+CGG + chr1_2:72915566-72915585 Msa0090820:intron 40.0%
! TCCACTTGGTTGTGTCTTTT+AGG + chr1_2:72916091-72916110 Msa0090820:intron 40.0%
TCCTAAAAGACACAACCAAG+TGG - chr1_2:72916095-72916114 None:intergenic 40.0%
! ACTTGGTTGTGTCTTTTAGG+AGG + chr1_2:72916094-72916113 Msa0090820:intron 40.0%
! CACACGCAAATTTTTGTCCT+TGG + chr1_2:72916182-72916201 Msa0090820:intron 40.0%
AGATTACTAGAAGTGGGACT+TGG - chr1_2:72916294-72916313 None:intergenic 40.0%
!! GAAAAAGTTGATGCCGAAAC+TGG + chr1_2:72916714-72916733 Msa0090820:intron 40.0%
TTTCTGCAACTTGCCAGTTT+CGG - chr1_2:72916730-72916749 None:intergenic 40.0%
TTGATTTCAAAAGGGATGGG+GGG - chr1_2:72916762-72916781 None:intergenic 40.0%
CTTGATTTCAAAAGGGATGG+GGG - chr1_2:72916763-72916782 None:intergenic 40.0%
ATGGCACCAGTTAGAGAAAT+TGG - chr1_2:72917241-72917260 None:intergenic 40.0%
!! ATTTCTCTAACTGGTGCCAT+TGG + chr1_2:72917241-72917260 Msa0090820:CDS 40.0%
TCAAGCAACAACAACACCAT+GGG + chr1_2:72917283-72917302 Msa0090820:CDS 40.0%
!! GTCTTGTTGTTGTTGCATGT+TGG - chr1_2:72917341-72917360 None:intergenic 40.0%
! GATTGCTGTTGTTGCTATTG+TGG - chr1_2:72917561-72917580 None:intergenic 40.0%
! TTCAGCAATGTTTTCTCCCA+AGG + chr1_2:72917718-72917737 Msa0090820:CDS 40.0%
TCTTCAGAAAGCTGCTCAAA+TGG + chr1_2:72917801-72917820 Msa0090820:CDS 40.0%
CTTCAGAAAGCTGCTCAAAT+GGG + chr1_2:72917802-72917821 Msa0090820:CDS 40.0%
ATGGGTGCAACTTCAAGTAA+TGG + chr1_2:72917820-72917839 Msa0090820:CDS 40.0%
! TCATGAACAGAGTAACTTGC+AGG + chr1_2:72917984-72918003 Msa0090820:CDS 40.0%
! ATGAACTCTTTTGCTGCTAC+AGG + chr1_2:72918012-72918031 Msa0090820:CDS 40.0%
!! ACTCGTGACTTTTTAGGAGT+TGG + chr1_2:72918123-72918142 Msa0090820:CDS 40.0%
!!! ACATGCAGCTGCTTTTAACT+TGG + chr1_2:72918206-72918225 Msa0090820:CDS 40.0%
AATGCTGCACAATCATTTGG+AGG + chr1_2:72918264-72918283 Msa0090820:CDS 40.0%
! TGACGTACGTACCTTTTAGT+AGG - chr1_2:72918349-72918368 None:intergenic 40.0%
!! TAGTGTTAACTTGTGCCCTT+AGG + chr1_2:72918445-72918464 Msa0090820:intron 40.0%
!! AGTGTTAACTTGTGCCCTTA+GGG + chr1_2:72918446-72918465 Msa0090820:intron 40.0%
GTTTCTTAACATGTGCCCTA+AGG - chr1_2:72918464-72918483 None:intergenic 40.0%
! TGTGAATAGGAATTTAGGGC+AGG + chr1_2:72918780-72918799 Msa0090820:intron 40.0%
CCGGTATAATTGACCTACTT+TGG + chr1_2:72918857-72918876 Msa0090820:intron 40.0%
GAAAATGGGTCAGTTATTCC+GGG + chr1_2:72919043-72919062 Msa0090820:intron 40.0%
TGTAAATGCCTTTCAACGGT+AGG - chr1_2:72919598-72919617 None:intergenic 40.0%
!! ACCGTTGAAAGGCATTTACA+AGG + chr1_2:72919598-72919617 Msa0090820:intron 40.0%
! ATATATTTGGTTGGCTGGCA+AGG + chr1_2:72920151-72920170 Msa0090820:intron 40.0%
TGTGTGACAAATGTATGAGG+TGG - chr1_2:72920250-72920269 None:intergenic 40.0%
GTCAAATAAATTGGGACGGA+GGG - chr1_2:72920898-72920917 None:intergenic 40.0%
AGGGGTCAAATAAATTGGGA+CGG - chr1_2:72920894-72920913 None:intergenic 40.0%
TCCCAATTTATTTGACCCCT+TGG + chr1_2:72920342-72920361 Msa0090820:intron 40.0%
GCCAAGGGGTCAAATAAATT+GGG - chr1_2:72920346-72920365 None:intergenic 40.0%
AGCCAAGGGGTCAAATAAAT+TGG - chr1_2:72920347-72920366 None:intergenic 40.0%
ATCTGTGTGAAATGAGCCAA+GGG - chr1_2:72920361-72920380 None:intergenic 40.0%
AATCTGTGTGAAATGAGCCA+AGG - chr1_2:72920362-72920381 None:intergenic 40.0%
GAAAATGGGTCAGTTATTCC+GGG + chr1_2:72919043-72919062 Msa0090820:intron 40.0%
GAAAATGGGTCAGTTATTCC+GGG - chr1_2:72919043-72919062 None:intergenic 40.0%
TCTGTGTGAAATGAGCTAAG+GGG + chr1_2:72920876-72920895 Msa0090820:intron 40.0%
AGGGGTCAAATAAATTGGGA+CGG + chr1_2:72920894-72920913 Msa0090820:intron 40.0%
GTCAAATAAATTGGGACGGA+GGG + chr1_2:72920898-72920917 Msa0090820:intron 40.0%
GAATGTATCATGCACGTATC+TGG + chr1_2:72921024-72921043 Msa0090820:intron 40.0%
TGTTCCTTTCTCCACTACTT+AGG + chr1_2:72921060-72921079 Msa0090820:intron 40.0%
! TAGACCTAAGTAGTGGAGAA+AGG - chr1_2:72921067-72921086 None:intergenic 40.0%
!!! TTTATTTTTTTGGGGGAGGG+GGG - chr1_2:72921443-72921462 None:intergenic 40.0%
ACTATCTCCCAAGACCCTAA+TGG + chr1_2:72914131-72914150 Msa0090820:CDS 45.0%
! GTTTGTTGCCATTAGGGTCT+TGG - chr1_2:72914142-72914161 None:intergenic 45.0%
AGACCCTAATGGCAACAAAC+AGG + chr1_2:72914142-72914161 Msa0090820:CDS 45.0%
! GCTGTAGGTTTTGCTCTCTT+TGG - chr1_2:72914197-72914216 None:intergenic 45.0%
AACCTACAGCTTCACAGAAG+AGG + chr1_2:72914207-72914226 Msa0090820:CDS 45.0%
GAAGAGGACACAATTTGCCT+TGG + chr1_2:72914223-72914242 Msa0090820:CDS 45.0%
GTCTTCTGCTTAAGCTTCCA+AGG - chr1_2:72914243-72914262 None:intergenic 45.0%
CGTTCATCATGACCCTTCAA+GGG + chr1_2:72914311-72914330 Msa0090820:CDS 45.0%
CTTGTGGCACCAGAGAATAT+AGG + chr1_2:72914457-72914476 Msa0090820:CDS 45.0%
TACGGTGTGGGCAAATGAAA+TGG + chr1_2:72914950-72914969 Msa0090820:intron 45.0%
GTGTGGGCAAATGAAATGGA+TGG + chr1_2:72914954-72914973 Msa0090820:intron 45.0%
CAAAAAACACACACGGAGGA+AGG + chr1_2:72915022-72915041 Msa0090820:intron 45.0%
TGGCATAGCAACACGTGAAT+AGG - chr1_2:72915219-72915238 None:intergenic 45.0%
TGCTATGCCATGAAGTTGTG+TGG + chr1_2:72915229-72915248 Msa0090820:intron 45.0%
!! CATGAAAAGAAGCACCTGCA+AGG - chr1_2:72915312-72915331 None:intergenic 45.0%
CTTGACATTGCAGTTCTTCG+TGG + chr1_2:72916014-72916033 Msa0090820:intron 45.0%
TTGAGCCAATGCATCACAGA+AGG - chr1_2:72917200-72917219 None:intergenic 45.0%
!! TGTGATGCATTGGCTCAAGA+GGG + chr1_2:72917202-72917221 Msa0090820:CDS 45.0%
! AGAGAAATTGGTGGCTGTCT+TGG - chr1_2:72917229-72917248 None:intergenic 45.0%
CAGCCACCAATTTCTCTAAC+TGG + chr1_2:72917232-72917251 Msa0090820:CDS 45.0%
GCACCAGTTAGAGAAATTGG+TGG - chr1_2:72917238-72917257 None:intergenic 45.0%
TCCATAGAGATGGGATCCAA+TGG - chr1_2:72917260-72917279 None:intergenic 45.0%
GCTTGAGCTTCCATAGAGAT+GGG - chr1_2:72917269-72917288 None:intergenic 45.0%
TGCTTGAGCTTCCATAGAGA+TGG - chr1_2:72917270-72917289 None:intergenic 45.0%
CTCAAGCAACAACAACACCA+TGG + chr1_2:72917282-72917301 Msa0090820:CDS 45.0%
TTTCAGTGGCTGAATTGCTG+TGG - chr1_2:72917366-72917385 None:intergenic 45.0%
GCCACTGAAATCTTGAGACT+CGG + chr1_2:72917376-72917395 Msa0090820:CDS 45.0%
AAATTGCCCAGTCCGATTAG+CGG - chr1_2:72917410-72917429 None:intergenic 45.0%
TTAGGTCTGAAAGTAGCCTG+GGG - chr1_2:72917448-72917467 None:intergenic 45.0%
GTTAGGTCTGAAAGTAGCCT+GGG - chr1_2:72917449-72917468 None:intergenic 45.0%
TGTTGTTGGGAAGGATCATG+AGG - chr1_2:72917517-72917536 None:intergenic 45.0%
CATGATCCTTCCCAACAACA+AGG + chr1_2:72917517-72917536 Msa0090820:CDS 45.0%
! AGCAATGTTTTCTCCCAAGG+AGG + chr1_2:72917721-72917740 Msa0090820:CDS 45.0%
!! GCTTTTGAGAAGAGAAGTCG+CGG - chr1_2:72917857-72917876 None:intergenic 45.0%
GCAAGTAACTCAGCATCTTC+TGG + chr1_2:72917895-72917914 Msa0090820:CDS 45.0%
AGTAACTCAGCATCTTCTGG+TGG + chr1_2:72917898-72917917 Msa0090820:CDS 45.0%
TGATCCTAGCAGAGTGCAAA+TGG + chr1_2:72917924-72917943 Msa0090820:CDS 45.0%
GATCCTAGCAGAGTGCAAAT+GGG + chr1_2:72917925-72917944 Msa0090820:CDS 45.0%
! GGAAGTGGGAACTATGGTTT+TGG + chr1_2:72917952-72917971 Msa0090820:CDS 45.0%
!!! AGTGGGAACTATGGTTTTGG+TGG + chr1_2:72917955-72917974 Msa0090820:CDS 45.0%
!!! GGAACTATGGTTTTGGTGGT+GGG + chr1_2:72917959-72917978 Msa0090820:CDS 45.0%
TTTGATCAAAGTGGAGGAGG+AGG + chr1_2:72918048-72918067 Msa0090820:CDS 45.0%
!!! CAGCTGACTCGTGACTTTTT+AGG + chr1_2:72918117-72918136 Msa0090820:CDS 45.0%
! GAGATTGTGAGAAGCATGAG+TGG + chr1_2:72918150-72918169 Msa0090820:CDS 45.0%
!! AGAAGCATGAGTGGTGTTGT+TGG + chr1_2:72918159-72918178 Msa0090820:CDS 45.0%
AACTTGGCAGCTTCTTTGGA+AGG + chr1_2:72918222-72918241 Msa0090820:CDS 45.0%
CAATCATTTGGAGGAGGAAG+AGG + chr1_2:72918273-72918292 Msa0090820:CDS 45.0%
ATTCATTGTGTACGCCTGTG+TGG - chr1_2:72918824-72918843 None:intergenic 45.0%
ATGAATTACTACCTCCGTCC+CGG + chr1_2:72918838-72918857 Msa0090820:intron 45.0%
GTAGGTCAATTATACCGGGA+CGG - chr1_2:72918855-72918874 None:intergenic 45.0%
GTCTGACAAGTTGTCTTGCA+TGG + chr1_2:72920047-72920066 Msa0090820:intron 45.0%
GGTCAAATAAATTGGGACGG+AGG - chr1_2:72920897-72920916 None:intergenic 45.0%
TCTGTGTGAAATGAGCCAAG+GGG - chr1_2:72920360-72920379 None:intergenic 45.0%
GGTCAAATAAATTGGGACGG+AGG + chr1_2:72920897-72920916 Msa0090820:intron 45.0%
AGAGCACAGTGATGCATATG+TGG + chr1_2:72921376-72921395 Msa0090820:three_prime_UTR 45.0%
GAGCACAGTGATGCATATGT+GGG + chr1_2:72921377-72921396 Msa0090820:three_prime_UTR 45.0%
!!! AAAATTTTATTTTACTTTTT+AGG - chr1_2:72916817-72916836 None:intergenic 5.0%
!!! TTTTACTTTATTTTTATATA+GGG + chr1_2:72918422-72918441 Msa0090820:intron 5.0%
!!! AATTTTATTTTATTTTTTTG+GGG - chr1_2:72921451-72921470 None:intergenic 5.0%
!!! GAATTTTATTTTATTTTTTT+GGG - chr1_2:72921452-72921471 None:intergenic 5.0%
!!! AGAATTTTATTTTATTTTTT+TGG - chr1_2:72921453-72921472 None:intergenic 5.0%
GGAAACAGATCCAGATGCAG+AGG + chr1_2:72914101-72914120 Msa0090820:CDS 50.0%
AGTGCTATCACCTCTGCATC+TGG - chr1_2:72914114-72914133 None:intergenic 50.0%
GTCCTCTTCTGTGAAGCTGT+AGG - chr1_2:72914212-72914231 None:intergenic 50.0%
GGGTCATGATGAACGCATGT+GGG - chr1_2:72914306-72914325 None:intergenic 50.0%
AGGGTCATGATGAACGCATG+TGG - chr1_2:72914307-72914326 None:intergenic 50.0%
GCGTTCATCATGACCCTTCA+AGG + chr1_2:72914310-72914329 Msa0090820:CDS 50.0%
ACTGTGGAACTCTCTTCTCC+AGG + chr1_2:72914484-72914503 Msa0090820:CDS 50.0%
TCAGAGATCATTCACGTGGG+TGG - chr1_2:72914986-72915005 None:intergenic 50.0%
CAGAGCCTTCTGTGATGCAT+TGG + chr1_2:72917192-72917211 Msa0090820:CDS 50.0%
!! CTGTGATGCATTGGCTCAAG+AGG + chr1_2:72917201-72917220 Msa0090820:CDS 50.0%
GCCATTGGATCCCATCTCTA+TGG + chr1_2:72917256-72917275 Msa0090820:CDS 50.0%
CTGGGCTATACTTAGACCCA+TGG - chr1_2:72917302-72917321 None:intergenic 50.0%
CATGGGTCTAAGTATAGCCC+AGG + chr1_2:72917300-72917319 Msa0090820:CDS 50.0%
GCCGAGTCTCAAGATTTCAG+TGG - chr1_2:72917380-72917399 None:intergenic 50.0%
TAGGTCTGAAAGTAGCCTGG+GGG - chr1_2:72917447-72917466 None:intergenic 50.0%
CGTTAGGTCTGAAAGTAGCC+TGG - chr1_2:72917450-72917469 None:intergenic 50.0%
AACTCAGCATCTTCTGGTGG+CGG + chr1_2:72917901-72917920 Msa0090820:CDS 50.0%
!! TGCAAATGGGTGGTGGAAGT+GGG + chr1_2:72917938-72917957 Msa0090820:CDS 50.0%
!!! GGGAACTATGGTTTTGGTGG+TGG + chr1_2:72917958-72917977 Msa0090820:CDS 50.0%
!! AGCATGAGTGGTGTTGTTGG+AGG + chr1_2:72918162-72918181 Msa0090820:CDS 50.0%
!! ATGAGTGGTGTTGTTGGAGG+AGG + chr1_2:72918165-72918184 Msa0090820:CDS 50.0%
GCTGCACAATCATTTGGAGG+AGG + chr1_2:72918267-72918286 Msa0090820:CDS 50.0%
TCATTTGGAGGAGGAAGAGG+AGG + chr1_2:72918276-72918295 Msa0090820:CDS 50.0%
ATGGGTCAGTTATTCCGGGA+CGG + chr1_2:72919047-72919066 Msa0090820:intron 50.0%
ATGGGTCAGTTATTCCGGGA+CGG + chr1_2:72919047-72919066 Msa0090820:intron 50.0%
ACTTTATACTCCCTCCGTCC+CGG - chr1_2:72920551-72920570 None:intergenic 50.0%
TGATATTACTCCCTCCGTCC+CGG + chr1_2:72920685-72920704 Msa0090820:intron 50.0%
ATGGGTCAGTTATTCCGGGA+CGG - chr1_2:72919047-72919066 None:intergenic 50.0%
TGATGAACGCATGTGGGCTC+AGG - chr1_2:72914300-72914319 None:intergenic 55.0%
!! CATGACCCTTCAAGGGCACT+TGG + chr1_2:72914318-72914337 Msa0090820:CDS 55.0%
GGTCACCAAGTGCCCTTGAA+GGG - chr1_2:72914326-72914345 None:intergenic 55.0%
AGGTCACCAAGTGCCCTTGA+AGG - chr1_2:72914327-72914346 None:intergenic 55.0%
TCAGTACACTGTGCCCTTGC+AGG + chr1_2:72915295-72915314 Msa0090820:intron 55.0%
TTTCAAAAGGGATGGGGGGC+TGG - chr1_2:72916758-72916777 None:intergenic 55.0%
GGGCATTTGTGCAGCTACCT+GGG - chr1_2:72917320-72917339 None:intergenic 55.0%
TGGGCATTTGTGCAGCTACC+TGG - chr1_2:72917321-72917340 None:intergenic 55.0%
CAGTGGCTGAATTGCTGTGG+TGG - chr1_2:72917363-72917382 None:intergenic 55.0%
CCACCCATTTGCACTCTGCT+AGG - chr1_2:72917931-72917950 None:intergenic 55.0%
CCTAGCAGAGTGCAAATGGG+TGG + chr1_2:72917928-72917947 Msa0090820:CDS 55.0%
AGCAGAGTGCAAATGGGTGG+TGG + chr1_2:72917931-72917950 Msa0090820:CDS 55.0%
!! GTGCAAATGGGTGGTGGAAG+TGG + chr1_2:72917937-72917956 Msa0090820:CDS 55.0%
!! GGTGGTGGAAGTGGGAACTA+TGG + chr1_2:72917946-72917965 Msa0090820:CDS 55.0%
GATCAAAGTGGAGGAGGAGG+AGG + chr1_2:72918051-72918070 Msa0090820:CDS 55.0%
!! AGTGGTGTTGTTGGAGGAGG+AGG + chr1_2:72918168-72918187 Msa0090820:CDS 55.0%
TTGGAGGAGGAGGAGGACAA+AGG + chr1_2:72918178-72918197 Msa0090820:CDS 55.0%
TGGAGGAGGAGGAGGACAAA+GGG + chr1_2:72918179-72918198 Msa0090820:CDS 55.0%
GGTCAATTATACCGGGACGG+AGG - chr1_2:72918852-72918871 None:intergenic 55.0%
GTCAGTTATTCCGGGACGGA+GGG + chr1_2:72919051-72919070 Msa0090820:intron 55.0%
AAATGGTACTCCCTCCGTCC+CGG - chr1_2:72919064-72919083 None:intergenic 55.0%
GTCAGTTATTCCGGGACGGA+GGG + chr1_2:72919051-72919070 Msa0090820:intron 55.0%
GTCAGTTATTCCGGGACGGA+GGG - chr1_2:72919051-72919070 None:intergenic 55.0%
ATTGGGACGGAGGGAGTAGT+TGG + chr1_2:72920907-72920926 Msa0090820:intron 55.0%
! AGGGCACTTGGTGACCTCAC+TGG + chr1_2:72914330-72914349 Msa0090820:CDS 60.0%
! GGGCACTTGGTGACCTCACT+GGG + chr1_2:72914331-72914350 Msa0090820:CDS 60.0%
TTGCCCAGTCCGATTAGCGG+CGG - chr1_2:72917407-72917426 None:intergenic 60.0%
TGATCACCACATGCTCCCCC+AGG + chr1_2:72917429-72917448 Msa0090820:CDS 60.0%
! AAGTAGCCTGGGGGAGCATG+TGG - chr1_2:72917438-72917457 None:intergenic 60.0%
CAAAGTGGAGGAGGAGGAGG+AGG + chr1_2:72918054-72918073 Msa0090820:CDS 60.0%
GGTGTAGGGCTTGGAAGAGG+AGG + chr1_2:72918081-72918100 Msa0090820:CDS 60.0%
GTAGGGCTTGGAAGAGGAGG+TGG + chr1_2:72918084-72918103 Msa0090820:CDS 60.0%
!! GGTGTTGTTGGAGGAGGAGG+AGG + chr1_2:72918171-72918190 Msa0090820:CDS 60.0%
GGTCAGTTATTCCGGGACGG+AGG + chr1_2:72919050-72919069 Msa0090820:intron 60.0%
GGTCAGTTATTCCGGGACGG+AGG + chr1_2:72919050-72919069 Msa0090820:intron 60.0%
GGTCAGTTATTCCGGGACGG+AGG - chr1_2:72919050-72919069 None:intergenic 60.0%
CAGCCGCCGCTAATCGGACT+GGG + chr1_2:72917401-72917420 Msa0090820:CDS 65.0%
AGTGGAGGAGGAGGAGGAGG+AGG + chr1_2:72918057-72918076 Msa0090820:CDS 65.0%
GTGGAGGAGGAGGAGGAGGA+GGG + chr1_2:72918058-72918077 Msa0090820:CDS 65.0%
TGGAGGAGGAGGAGGAGGAG+GGG + chr1_2:72918059-72918078 Msa0090820:CDS 65.0%
! GAGGAGGAGGAGGGGGTGTA+GGG + chr1_2:72918067-72918086 Msa0090820:CDS 65.0%
! GGGGGTGTAGGGCTTGGAAG+AGG + chr1_2:72918078-72918097 Msa0090820:CDS 65.0%
! GGAGGAGGAAGAGGAGGTGC+TGG + chr1_2:72918282-72918301 Msa0090820:CDS 65.0%
!! GGAGGAAGAGGAGGTGCTGG+TGG + chr1_2:72918285-72918304 Msa0090820:CDS 65.0%
!! GGAAGAGGAGGTGCTGGTGG+TGG + chr1_2:72918288-72918307 Msa0090820:CDS 65.0%
!! AGAGGAGGTGCTGGTGGTGG+TGG + chr1_2:72918291-72918310 Msa0090820:CDS 65.0%
TTTGGGGGAGGGGGGTTCGA+CGG - chr1_2:72921435-72921454 None:intergenic 65.0%
TCGGCGCAGCCGCCGCTAAT+CGG + chr1_2:72917395-72917414 Msa0090820:CDS 70.0%
GCAGCCGCCGCTAATCGGAC+TGG + chr1_2:72917400-72917419 Msa0090820:CDS 70.0%
GGAGGAGGAGGAGGAGGAGG+GGG + chr1_2:72918060-72918079 Msa0090820:CDS 70.0%
! GGAGGAGGAGGAGGGGGTGT+AGG + chr1_2:72918066-72918085 Msa0090820:CDS 70.0%
! GGAGGAGGGGGTGTAGGGCT+TGG + chr1_2:72918072-72918091 Msa0090820:CDS 70.0%
!! GGTGCTGGTGGTGGTGGAGC+AGG + chr1_2:72918297-72918316 Msa0090820:CDS 70.0%
!! GCTGGTGGTGGTGGAGCAGG+AGG + chr1_2:72918300-72918319 Msa0090820:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 72914099 72921606 72914099 ID=Msa0090820;Name=Msa0090820
chr1_2 mRNA 72914099 72921606 72914099 ID=Msa0090820-mRNA-1;Parent=Msa0090820;Name=Msa0090820-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|1|0.66|1|0.5|0.33|3|299|523
chr1_2 exon 72914099 72914505 72914099 ID=Msa0090820-mRNA-1:exon:25351;Parent=Msa0090820-mRNA-1
chr1_2 exon 72917171 72918356 72917171 ID=Msa0090820-mRNA-1:exon:25352;Parent=Msa0090820-mRNA-1
chr1_2 exon 72921329 72921606 72921329 ID=Msa0090820-mRNA-1:exon:25353;Parent=Msa0090820-mRNA-1
chr1_2 CDS 72914099 72914505 72914099 ID=Msa0090820-mRNA-1:cds;Parent=Msa0090820-mRNA-1
chr1_2 CDS 72917171 72918335 72917171 ID=Msa0090820-mRNA-1:cds;Parent=Msa0090820-mRNA-1
chr1_2 three_prime_UTR 72918336 72918356 72918336 ID=Msa0090820-mRNA-1:three_prime_utr;Parent=Msa0090820-mRNA-1
chr1_2 three_prime_UTR 72921329 72921606 72921329 ID=Msa0090820-mRNA-1:three_prime_utr;Parent=Msa0090820-mRNA-1
Gene Sequence

>Msa0090820

ATGGAAACAGATCCAGATGCAGAGGTGATAGCACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTTATTTGTGAGGTATGCAACAAAGGGTTCCAAAGAGAGCAAAACCTACAGCTTCACAGAAGAGGACACAATTTGCCTTGGAAGCTTAAGCAGAAGACTACAAAAGAGCCTAAGAGAAAGGTTTATCTGTGTCCTGAGCCCACATGCGTTCATCATGACCCTTCAAGGGCACTTGGTGACCTCACTGGGATTAAGAAACACTACTCTCGCAAACATGGTGAGAAGAAATGGAAGTGTGATAAGTGCTCTAAGAAGTATGCTGTTCAATCTGATTGGAAGGCACATTCTAAGACTTGTGGCACCAGAGAATATAGGTGTGACTGTGGAACTCTCTTCTCCAGGAGAGACAGTTTCATAACTCACAGAGCCTTCTGTGATGCATTGGCTCAAGAGGGTCCAAGACAGCCACCAATTTCTCTAACTGGTGCCATTGGATCCCATCTCTATGGAAGCTCAAGCAACAACAACACCATGGGTCTAAGTATAGCCCAGGTAGCTGCACAAATGCCCAACATGCAACAACAACAAGACCACCACAGCAATTCAGCCACTGAAATCTTGAGACTCGGCGCAGCCGCCGCTAATCGGACTGGGCAATTTGATCACCACATGCTCCCCCAGGCTACTTTCAGACCTAACGCCTTCTTCAACAATAACATTCATGAGCCAAACCAAAACTTTGTTCCTCATGATCCTTCCCAACAACAAGGTTTAATGATGCAGAATAGCCACAATAGCAACAACAGCAATCTCTTCAACATTCCGAATTTCCTTTCAAGTAACAGTACTAACAGTAGCAACAACTCATTCTCTGAACACTTGAATGTGAATAATGAAGGAACAAATTTCTTCAATGGATCAGCTGGAACAAGTAGTGCTCCATCACTCTTCAGCAATGTTTTCTCCCAAGGAGGAAACAGTAACATTAATGCTGCTGGTACTGCTATATCATCAATGTCAGCAACTGCACTTCTTCAGAAAGCTGCTCAAATGGGTGCAACTTCAAGTAATGGAAATGGCACTACCGCGACTTCTCTTCTCAAAAGCTTTGGAAACAATACTGGTGCAAGTAACTCAGCATCTTCTGGTGGCGGTGATCCTAGCAGAGTGCAAATGGGTGGTGGAAGTGGGAACTATGGTTTTGGTGGTGGGAATCATGAACAGAGTAACTTGCAGGATTTGATGAACTCTTTTGCTGCTACAGGAAATACTTCAATATTTGATCAAAGTGGAGGAGGAGGAGGAGGAGGGGGTGTAGGGCTTGGAAGAGGAGGTGGTGATAGCAGTCAGCTGACTCGTGACTTTTTAGGAGTTGGTCATGAGATTGTGAGAAGCATGAGTGGTGTTGTTGGAGGAGGAGGAGGACAAAGGGATCAACATGCAGCTGCTTTTAACTTGGCAGCTTCTTTGGAAGGAGATCAGAGAAACAATATCAATGCTGCACAATCATTTGGAGGAGGAAGAGGAGGTGCTGGTGGTGGTGGAGCAGGAGGAAATTTTCATTGA
Protein sequence

>Msa0090820

METDPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQEGPRQPPISLTGAIGSHLYGSSSNNNTMGLSIAQVAAQMPNMQQQQDHHSNSATEILRLGAAAANRTGQFDHHMLPQATFRPNAFFNNNIHEPNQNFVPHDPSQQQGLMMQNSHNSNNSNLFNIPNFLSSNSTNSSNNSFSEHLNVNNEGTNFFNGSAGTSSAPSLFSNVFSQGGNSNINAAGTAISSMSATALLQKAAQMGATSSNGNGTTATSLLKSFGNNTGASNSASSGGGDPSRVQMGGGSGNYGFGGGNHEQSNLQDLMNSFAATGNTSIFDQSGGGGGGGGVGLGRGGGDSSQLTRDFLGVGHEIVRSMSGVVGGGGGQRDQHAAAFNLAASLEGDQRNNINAAQSFGGGRGGAGGGGAGGNFH*