AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0090900

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0090900 MtrunA17_Chr3g0117091 75.068 369 49 14 1 346 1 349 4.53e-180 502
Msa0090900 MtrunA17_Chr1g0211161 68.601 293 20 7 3 289 4 230 5.24e-126 360
Msa0090900 MtrunA17_Chr4g0058631 50.649 385 127 16 1 346 1 361 6.26e-107 317
Msa0090900 MtrunA17_Chr7g0270891 76.259 139 33 0 1 139 1 139 1.38e-75 237
Msa0090900 MtrunA17_Chr1g0193371 81.395 129 24 0 1 129 1 129 1.54e-75 237
Msa0090900 MtrunA17_Chr1g0193801 42.486 346 135 10 1 298 1 330 9.14e-74 233
Msa0090900 MtrunA17_Chr7g0271241 79.545 132 27 0 1 132 1 132 1.97e-68 219
Msa0090900 MtrunA17_Chr8g0342521 75.000 124 31 0 1 124 1 124 5.84e-66 212
Msa0090900 MtrunA17_Chr2g0330041 74.400 125 32 0 1 125 1 125 1.09e-65 213
Msa0090900 MtrunA17_Chr8g0342541 74.194 124 32 0 1 124 1 124 3.05e-65 210
Msa0090900 MtrunA17_Chr2g0309911 69.841 126 38 0 4 129 3 128 2.74e-63 204
Msa0090900 MtrunA17_Chr8g0342481 76.271 118 27 1 1 117 1 118 2.76e-60 199
Msa0090900 MtrunA17_Chr3g0131121 63.566 129 47 0 1 129 1 129 9.07e-60 194
Msa0090900 MtrunA17_Chr5g0435101 64.000 125 45 0 3 127 2 126 2.10e-59 190
Msa0090900 MtrunA17_Chr5g0434571 54.913 173 74 2 1 169 37 209 3.61e-59 194
Msa0090900 MtrunA17_Chr8g0387421 68.908 119 37 0 1 119 1 119 4.81e-59 193
Msa0090900 MtrunA17_Chr8g0385321 64.341 129 46 0 1 129 1 129 6.70e-59 192
Msa0090900 MtrunA17_Chr4g0037141 51.136 176 77 2 1 167 1 176 8.91e-59 191
Msa0090900 MtrunA17_Chr4g0039971 60.294 136 54 0 1 136 2 137 1.24e-58 193
Msa0090900 MtrunA17_Chr4g0057031 64.341 129 46 0 1 129 1 129 1.60e-58 190
Msa0090900 MtrunA17_Chr3g0110351 65.649 131 45 0 1 131 1 131 2.29e-58 191
Msa0090900 MtrunA17_Chr7g0217741 61.268 142 53 1 1 142 1 140 4.84e-57 187
Msa0090900 MtrunA17_Chr3g0115821 60.294 136 54 0 1 136 1 136 4.98e-57 188
Msa0090900 MtrunA17_Chr5g0395281 64.800 125 44 0 12 136 12 136 1.72e-56 186
Msa0090900 MtrunA17_Chr5g0397231 70.909 110 32 0 1 110 1 110 1.73e-56 187
Msa0090900 MtrunA17_Chr7g0228891 59.286 140 57 0 1 140 1 140 1.79e-56 185
Msa0090900 MtrunA17_Chr6g0452271 59.690 129 52 0 1 129 1 129 1.96e-56 187
Msa0090900 MtrunA17_Chr4g0042671 64.844 128 45 0 1 128 1 128 2.30e-56 188
Msa0090900 MtrunA17_Chr6g0453471 61.765 136 50 1 1 136 1 134 3.62e-56 186
Msa0090900 MtrunA17_Chr4g0032401 58.278 151 60 1 11 161 16 163 1.66e-55 184
Msa0090900 MtrunA17_Chr5g0410961 60.156 128 51 0 1 128 1 128 4.62e-55 183
Msa0090900 MtrunA17_Chr8g0349261 51.323 189 76 4 1 185 1 177 6.16e-55 181
Msa0090900 MtrunA17_Chr2g0281071 61.240 129 49 1 1 128 1 129 6.63e-55 183
Msa0090900 MtrunA17_Chr6g0470971 50.495 202 79 5 9 191 11 210 7.83e-55 181
Msa0090900 MtrunA17_Chr2g0323411 59.542 131 53 0 1 131 1 131 1.18e-54 182
Msa0090900 MtrunA17_Chr3g0088461 74.074 108 28 0 9 116 19 126 4.47e-54 181
Msa0090900 MtrunA17_Chr2g0328771 74.286 105 27 0 12 116 20 124 5.07e-54 180
Msa0090900 MtrunA17_Chr4g0048511 60.465 129 50 1 1 128 1 129 5.42e-54 181
Msa0090900 MtrunA17_Chr1g0203441 70.588 119 34 1 9 127 10 127 7.49e-54 178
Msa0090900 MtrunA17_Chr3g0103281 62.016 129 49 0 1 129 1 129 1.01e-53 179
Msa0090900 MtrunA17_Chr3g0121241 62.903 124 46 0 6 129 36 159 3.40e-53 177
Msa0090900 MtrunA17_Chr4g0044421 60.317 126 50 0 1 126 1 126 4.63e-52 171
Msa0090900 MtrunA17_Chr1g0203411 62.931 116 43 0 1 116 1 116 5.17e-52 174
Msa0090900 MtrunA17_Chr7g0274581 61.864 118 45 0 1 118 1 118 2.03e-51 169
Msa0090900 MtrunA17_Chr2g0323351 61.864 118 45 0 1 118 1 118 2.74e-51 171
Msa0090900 MtrunA17_Chr7g0261281 46.196 184 86 2 1 184 1 171 7.59e-50 168
Msa0090900 MtrunA17_Chr4g0070611 48.765 162 68 2 1 147 1 162 2.73e-49 167
Msa0090900 MtrunA17_Chr4g0022931 59.821 112 45 0 5 116 6 117 4.30e-49 166
Msa0090900 MtrunA17_Chr4g0070641 48.000 175 81 3 1 172 1 168 4.34e-49 162
Msa0090900 MtrunA17_Chr1g0187761 63.793 116 42 0 1 116 1 116 6.34e-49 165
Msa0090900 MtrunA17_Chr7g0217221 49.425 174 79 2 1 174 1 165 1.35e-48 164
Msa0090900 MtrunA17_Chr4g0022901 59.292 113 46 0 5 117 6 118 3.82e-48 163
Msa0090900 MtrunA17_Chr1g0152011 35.740 277 137 6 1 253 1 260 4.38e-47 162
Msa0090900 MtrunA17_Chr1g0151941 51.825 137 62 3 1 136 1 134 5.38e-47 159
Msa0090900 MtrunA17_Chr1g0167691 58.974 117 48 0 1 117 1 117 7.32e-47 159
Msa0090900 MtrunA17_Chr4g0022911 56.780 118 50 1 1 117 1 118 8.27e-47 160
Msa0090900 MtrunA17_Chr4g0068061 62.931 116 43 0 1 116 1 116 1.53e-46 161
Msa0090900 MtrunA17_Chr1g0167661 59.829 117 47 0 1 117 1 117 2.53e-46 158
Msa0090900 MtrunA17_Chr5g0417821 59.829 117 47 0 12 128 7 123 2.63e-46 159
Msa0090900 MtrunA17_Chr5g0400821 49.007 151 76 1 1 150 1 151 1.13e-45 158
Msa0090900 MtrunA17_Chr8g0346561 58.475 118 49 0 1 118 1 118 1.35e-45 157
Msa0090900 MtrunA17_Chr4g0060721 54.745 137 56 1 1 131 2 138 1.45e-45 158
Msa0090900 MtrunA17_Chr1g0194951 63.793 116 42 0 1 116 1 116 1.53e-45 159
Msa0090900 MtrunA17_Chr7g0275911 57.983 119 50 0 1 119 1 119 2.53e-45 155
Msa0090900 MtrunA17_Chr4g0028311 59.322 118 47 1 1 117 1 118 4.44e-45 157
Msa0090900 MtrunA17_Chr3g0092401 60.169 118 47 0 1 118 2 119 6.68e-45 156
Msa0090900 MtrunA17_Chr8g0342531 70.833 96 28 0 1 96 1 96 7.05e-45 151
Msa0090900 MtrunA17_Chr2g0311221 60.550 109 43 0 2 110 4 112 1.50e-44 155
Msa0090900 MtrunA17_Chr7g0254411 57.143 126 52 1 1 124 1 126 1.86e-44 155
Msa0090900 MtrunA17_Chr8g0342511 75.862 87 21 0 1 87 1 87 5.09e-44 147
Msa0090900 MtrunA17_Chr3g0135311 56.780 118 50 1 1 117 1 118 1.37e-43 153
Msa0090900 MtrunA17_Chr8g0343831 60.000 110 44 0 10 119 6 115 1.74e-43 150
Msa0090900 MtrunA17_Chr7g0264641 56.780 118 50 1 1 117 1 118 1.98e-43 151
Msa0090900 MtrunA17_Chr6g0453211 47.701 174 81 2 1 174 1 164 2.18e-42 149
Msa0090900 MtrunA17_Chr2g0327351 58.559 111 45 1 1 110 1 111 7.82e-42 148
Msa0090900 MtrunA17_Chr7g0247131 55.118 127 56 1 43 168 9 135 1.01e-41 146
Msa0090900 MtrunA17_Chr4g0055981 59.813 107 43 0 9 115 52 158 2.48e-41 144
Msa0090900 MtrunA17_Chr4g0054391 58.182 110 45 1 1 109 1 110 4.50e-41 145
Msa0090900 MtrunA17_Chr8g0342471 69.565 92 27 1 1 91 1 92 4.59e-41 140
Msa0090900 MtrunA17_Chr1g0186061 57.658 111 47 0 5 115 13 123 5.82e-41 144
Msa0090900 MtrunA17_Chr1g0168661 56.250 112 49 0 4 115 13 124 1.00e-40 143
Msa0090900 MtrunA17_Chr8g0342461 68.478 92 28 1 1 91 1 92 1.19e-40 139
Msa0090900 MtrunA17_Chr4g0072751 54.955 111 49 1 1 110 1 111 9.84e-40 143
Msa0090900 MtrunA17_Chr7g0269831 60.345 116 46 0 1 116 1 116 1.47e-39 143
Msa0090900 MtrunA17_Chr4g0022891 57.143 105 45 0 9 113 9 113 2.35e-39 139
Msa0090900 MtrunA17_Chr3g0099131 57.273 110 46 1 12 121 41 149 3.11e-39 145
Msa0090900 MtrunA17_Chr1g0180391 56.481 108 47 0 12 119 19 126 8.91e-39 137
Msa0090900 MtrunA17_Chr7g0228231 52.542 118 54 1 1 116 1 118 1.03e-38 137
Msa0090900 MtrunA17_Chr4g0022881 55.660 106 47 0 9 114 9 114 1.16e-38 137
Msa0090900 MtrunA17_Chr6g0450101 53.390 118 53 1 1 116 1 118 1.42e-38 136
Msa0090900 MtrunA17_Chr6g0487491 52.381 126 51 2 1 117 1 126 1.77e-38 137
Msa0090900 MtrunA17_Chr1g0194301 53.153 111 52 0 12 122 33 143 1.78e-38 138
Msa0090900 MtrunA17_Chr2g0327821 46.512 129 67 1 8 134 2 130 1.94e-38 137
Msa0090900 MtrunA17_Chr8g0354661 57.692 104 44 0 12 115 37 140 9.40e-38 142
Msa0090900 MtrunA17_Chr3g0080861 56.731 104 45 0 12 115 37 140 1.01e-37 141
Msa0090900 MtrunA17_Chr1g0154031 55.769 104 46 0 12 115 76 179 1.61e-37 139
Msa0090900 MtrunA17_Chr1g0209661 49.580 119 60 0 9 127 24 142 3.97e-37 135
Msa0090900 MtrunA17_Chr1g0194291 56.731 104 45 0 12 115 21 124 4.96e-37 134
Msa0090900 MtrunA17_Chr5g0434831 55.660 106 47 0 12 117 7 112 6.66e-37 131
Msa0090900 MtrunA17_Chr7g0240821 59.000 100 41 0 17 116 6 105 9.88e-37 132
Msa0090900 MtrunA17_Chr2g0322521 54.386 114 52 0 2 115 19 132 3.35e-36 135
Msa0090900 MtrunA17_Chr5g0434931 50.000 114 57 0 8 121 31 144 3.49e-36 132
Msa0090900 MtrunA17_Chr5g0434911 51.327 113 55 0 7 119 16 128 4.86e-36 132
Msa0090900 MtrunA17_Chr7g0220341 44.156 154 68 2 12 163 25 162 5.04e-35 129
Msa0090900 MtrunA17_Chr4g0042611 61.364 88 34 0 1 88 1 88 5.38e-35 123
Msa0090900 MtrunA17_Chr4g0030881 50.000 114 50 1 13 119 8 121 6.67e-35 128
Msa0090900 MtrunA17_Chr8g0360111 55.446 101 45 0 12 112 25 125 2.06e-34 127
Msa0090900 MtrunA17_Chr5g0434841 50.909 110 54 0 10 119 18 127 2.80e-34 128
Msa0090900 MtrunA17_Chr7g0228991 50.893 112 55 0 8 119 25 136 2.88e-34 127
Msa0090900 MtrunA17_Chr1g0192411 45.255 137 69 1 11 141 11 147 3.24e-34 130
Msa0090900 MtrunA17_Chr4g0068921 54.630 108 48 1 12 119 24 130 2.10e-32 119
Msa0090900 MtrunA17_Chr2g0323321 60.465 86 34 0 7 92 6 91 2.93e-32 117
Msa0090900 MtrunA17_Chr8g0334881 51.402 107 51 1 9 114 7 113 4.73e-32 122
Msa0090900 MtrunA17_Chr2g0293911 54.369 103 47 0 12 114 24 126 1.71e-31 120
Msa0090900 MtrunA17_Chr5g0440781 49.107 112 55 2 13 123 13 123 2.47e-31 117
Msa0090900 MtrunA17_Chr5g0441141 33.040 227 127 7 13 232 13 221 3.29e-31 119
Msa0090900 MtrunA17_Chr5g0440761 32.468 231 131 7 13 236 13 225 4.20e-31 118
Msa0090900 MtrunA17_Chr5g0441131 50.000 112 54 2 13 123 10 120 4.38e-31 116
Msa0090900 MtrunA17_Chr3g0093811 60.920 87 34 0 43 129 13 99 4.72e-31 118
Msa0090900 MtrunA17_Chr5g0395221 61.250 80 31 0 9 88 9 88 1.69e-29 108
Msa0090900 MtrunA17_Chr2g0294811 60.227 88 35 0 1 88 1 88 2.37e-29 109
Msa0090900 MtrunA17_Chr4g0013361 50.000 104 51 1 12 114 10 113 3.72e-29 114
Msa0090900 MtrunA17_Chr4g0008551 50.000 114 50 3 14 126 38 145 2.48e-28 112
Msa0090900 MtrunA17_Chr3g0099141 55.422 83 37 0 12 94 40 122 7.97e-28 106
Msa0090900 MtrunA17_Chr5g0401731 47.863 117 58 2 14 129 15 129 3.08e-27 109
Msa0090900 MtrunA17_Chr5g0429661 45.714 105 54 2 12 115 120 222 4.52e-27 109
Msa0090900 MtrunA17_Chr7g0238631 43.448 145 74 4 8 146 107 249 7.91e-27 111
Msa0090900 MtrunA17_Chr4g0053431 50.000 102 50 1 14 115 5 105 1.86e-26 106
Msa0090900 MtrunA17_Chr7g0229131 38.732 142 81 2 43 181 3 141 8.83e-26 101
Msa0090900 MtrunA17_Chr4g0058991 41.071 112 63 2 9 119 204 313 1.12e-25 107
Msa0090900 MtrunA17_Chr7g0229101 61.972 71 27 0 43 113 3 73 1.30e-25 102
Msa0090900 MtrunA17_Chr3g0133601 49.020 102 51 1 14 115 37 137 1.94e-25 102
Msa0090900 MtrunA17_Chr3g0117511 40.496 121 67 3 2 119 169 287 4.29e-25 105
Msa0090900 MtrunA17_Chr6g0454921 48.544 103 50 2 14 115 15 115 4.80e-25 100
Msa0090900 MtrunA17_Chr3g0139671 45.455 110 57 2 8 116 79 186 7.03e-25 105
Msa0090900 MtrunA17_Chr3g0139671 32.407 108 71 2 14 120 33 139 7.82e-11 63.5
Msa0090900 MtrunA17_Chr5g0434901 56.338 71 31 0 43 113 4 74 4.01e-24 95.5
Msa0090900 MtrunA17_Chr4g0042501 35.948 153 84 4 14 165 105 244 4.71e-24 102
Msa0090900 MtrunA17_Chr6g0480581 43.137 102 55 2 14 114 4 103 8.49e-24 98.2
Msa0090900 MtrunA17_Chr1g0157731 44.545 110 58 2 8 116 85 192 9.37e-24 102
Msa0090900 MtrunA17_Chr5g0417621 42.727 110 60 2 11 119 131 238 1.47e-23 100
Msa0090900 MtrunA17_Chr6g0460661 44.330 97 51 2 14 109 16 110 2.70e-22 92.0
Msa0090900 MtrunA17_Chr7g0228531 38.679 106 63 2 14 119 220 323 1.17e-21 95.5
Msa0090900 MtrunA17_Chr6g0453751 50.538 93 37 2 12 95 20 112 1.51e-21 89.0
Msa0090900 MtrunA17_Chr3g0125801 43.925 107 57 2 14 119 16 120 4.45e-21 91.7
Msa0090900 MtrunA17_Chr5g0437321 46.000 100 51 2 14 112 19 116 5.30e-21 91.7
Msa0090900 MtrunA17_Chr7g0228401 44.944 89 48 1 25 113 290 377 2.93e-20 91.7
Msa0090900 MtrunA17_Chr6g0460671 40.777 103 58 2 14 115 99 199 1.39e-19 88.6
Msa0090900 MtrunA17_Chr7g0254261 39.844 128 73 3 14 140 89 213 1.43e-19 88.6
Msa0090900 MtrunA17_Chr5g0425591 45.238 84 45 1 13 95 10 93 2.08e-19 82.0
Msa0090900 MtrunA17_Chr1g0177901 45.455 88 44 2 24 111 7 90 4.15e-19 84.7
Msa0090900 MtrunA17_Chr5g0397841 42.000 100 55 2 12 110 108 205 4.63e-19 88.2
Msa0090900 MtrunA17_Chr7g0238651 32.886 149 86 5 17 152 10 157 2.97e-18 84.7
Msa0090900 MtrunA17_Chr7g0228481 38.182 110 63 3 14 120 220 327 3.98e-18 85.1
Msa0090900 MtrunA17_Chr7g0233061 31.973 147 73 4 14 145 180 314 3.35e-17 81.6
Msa0090900 MtrunA17_Chr5g0395231 66.667 51 17 0 78 128 5 55 1.13e-16 78.6
Msa0090900 MtrunA17_Chr3g0145551 71.053 38 11 0 92 129 2 39 1.22e-13 65.9
Msa0090900 MtrunA17_Chr5g0416341 34.343 99 64 1 17 115 29 126 1.73e-13 71.2
Msa0090900 MtrunA17_Chr8g0362231 35.849 106 66 2 17 122 25 128 2.73e-13 70.5
Msa0090900 MtrunA17_Chr1g0193901 51.667 60 28 1 10 68 9 68 3.63e-13 65.5
Msa0090900 MtrunA17_Chr1g0193891 51.667 60 28 1 10 68 9 68 3.63e-13 65.5
Msa0090900 MtrunA17_Chr1g0193871 51.667 60 28 1 10 68 9 68 3.63e-13 65.5
Msa0090900 MtrunA17_Chr1g0193881 51.667 60 28 1 10 68 9 68 3.63e-13 65.5
Msa0090900 MtrunA17_Chr5g0434871 56.818 44 19 0 74 117 2 45 4.19e-13 63.9
Msa0090900 MtrunA17_Chr4g0042621 70.000 40 12 0 89 128 15 54 5.20e-13 68.9
Msa0090900 MtrunA17_Chr2g0322831 58.537 41 17 0 70 110 34 74 2.23e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0090900 AT5G26660.1 81.955 133 24 0 1 133 1 133 6.14e-79 245
Msa0090900 AT1G57560.2 78.947 133 28 0 1 133 1 133 2.04e-75 234
Msa0090900 AT1G57560.1 80.620 129 25 0 1 129 1 129 2.08e-75 235
Msa0090900 AT1G09540.1 75.000 144 34 1 1 144 1 142 3.43e-74 234
Msa0090900 AT4G01680.3 74.126 143 36 1 1 143 1 142 1.33e-73 228
Msa0090900 AT4G01680.1 74.126 143 36 1 1 143 1 142 1.85e-72 228
Msa0090900 AT4G01680.2 68.387 155 36 2 1 143 1 154 6.26e-69 219
Msa0090900 AT3G13890.2 77.778 117 26 0 1 117 1 117 7.86e-64 207
Msa0090900 AT3G12720.1 69.919 123 37 0 4 126 14 136 1.48e-63 204
Msa0090900 AT5G16600.1 55.172 174 76 2 1 174 1 172 5.76e-61 198
Msa0090900 AT3G13890.1 72.222 126 26 1 1 117 1 126 1.01e-60 199
Msa0090900 AT1G63910.1 63.704 135 49 0 1 135 1 135 3.85e-60 197
Msa0090900 AT1G66230.1 61.538 143 51 1 1 143 1 139 1.21e-59 194
Msa0090900 AT4G22680.1 61.111 144 56 0 1 144 1 144 1.36e-59 193
Msa0090900 AT4G34990.1 63.566 129 47 0 1 129 1 129 3.50e-59 192
Msa0090900 AT4G38620.1 49.704 169 82 1 1 169 1 166 1.31e-58 191
Msa0090900 AT4G12350.1 63.566 129 47 0 1 129 1 129 6.40e-58 189
Msa0090900 AT2G16720.1 56.463 147 62 1 1 147 1 145 1.14e-57 188
Msa0090900 AT4G21440.1 61.069 131 51 0 1 131 1 131 2.10e-57 190
Msa0090900 AT3G02940.2 60.938 128 50 0 1 128 1 128 2.91e-57 188
Msa0090900 AT5G61420.2 62.016 129 49 0 1 129 1 129 4.98e-57 189
Msa0090900 AT3G02940.1 60.938 128 50 0 1 128 1 128 7.83e-57 187
Msa0090900 AT3G02940.3 60.938 128 50 0 1 128 1 128 7.83e-57 187
Msa0090900 AT4G05100.1 61.240 129 49 1 1 128 1 129 1.22e-56 187
Msa0090900 AT5G15310.4 64.062 128 46 0 1 128 1 128 1.57e-56 184
Msa0090900 AT3G01140.2 52.809 178 72 2 1 178 1 166 1.89e-56 187
Msa0090900 AT5G15310.1 64.062 128 46 0 1 128 1 128 2.23e-56 186
Msa0090900 AT5G15310.2 64.062 128 46 0 1 128 1 128 3.07e-56 186
Msa0090900 AT3G61250.1 62.791 129 48 0 1 129 1 129 3.62e-56 185
Msa0090900 AT1G22640.1 58.088 136 55 1 1 136 1 134 6.30e-56 183
Msa0090900 AT1G34670.1 62.500 128 48 0 1 128 1 128 8.81e-56 186
Msa0090900 AT5G65230.1 62.121 132 50 0 1 132 1 132 1.06e-55 184
Msa0090900 AT5G16770.4 60.156 128 51 0 1 128 1 128 1.62e-55 184
Msa0090900 AT5G16770.3 60.156 128 51 0 1 128 1 128 1.62e-55 184
Msa0090900 AT5G14340.1 50.556 180 84 3 1 178 13 189 1.74e-55 182
Msa0090900 AT4G28110.1 58.594 128 53 0 1 128 1 128 2.22e-55 182
Msa0090900 AT5G16770.1 60.156 128 51 0 1 128 1 128 3.43e-55 184
Msa0090900 AT5G16770.2 60.156 128 51 0 1 128 1 128 3.43e-55 184
Msa0090900 AT4G09460.1 59.701 134 52 1 1 134 1 132 4.17e-55 180
Msa0090900 AT5G07690.1 60.465 129 51 0 1 129 1 129 5.09e-55 183
Msa0090900 AT5G10280.1 61.719 128 49 0 1 128 1 128 5.66e-55 183
Msa0090900 AT5G56110.1 62.016 129 49 0 1 129 1 129 7.97e-55 182
Msa0090900 AT5G60890.1 58.140 129 54 0 1 129 1 129 8.77e-55 181
Msa0090900 AT4G17785.2 60.584 137 53 1 1 136 1 137 1.11e-54 183
Msa0090900 AT4G17785.1 60.584 137 53 1 1 136 1 137 1.25e-54 183
Msa0090900 AT3G01140.1 53.179 173 69 2 6 178 49 209 1.31e-54 184
Msa0090900 AT1G74430.1 67.521 117 38 0 12 128 12 128 2.96e-54 179
Msa0090900 AT3G13540.1 56.944 144 62 0 6 149 17 160 3.49e-54 178
Msa0090900 AT5G12870.1 73.394 109 29 0 10 118 16 124 1.07e-53 178
Msa0090900 AT1G35515.1 59.231 130 53 0 1 130 1 130 1.73e-53 175
Msa0090900 AT5G54230.1 60.305 131 52 0 1 131 1 131 4.43e-53 178
Msa0090900 AT5G07700.1 58.140 129 54 0 1 129 1 129 4.67e-53 178
Msa0090900 AT5G07700.2 58.140 129 54 0 1 129 1 129 4.67e-53 178
Msa0090900 AT1G74080.1 53.846 143 66 0 1 143 1 143 1.37e-52 177
Msa0090900 AT3G08500.1 70.690 116 31 1 4 116 19 134 1.75e-52 177
Msa0090900 AT3G28470.1 62.791 129 48 0 1 129 1 129 2.00e-52 176
Msa0090900 AT5G62320.1 48.810 168 78 2 2 162 3 169 8.66e-52 172
Msa0090900 AT1G18570.1 57.692 130 54 1 1 129 1 130 2.02e-51 174
Msa0090900 AT2G31180.1 62.712 118 44 0 1 118 1 118 2.55e-51 171
Msa0090900 AT1G18710.1 60.331 121 48 0 12 132 12 132 1.66e-50 169
Msa0090900 AT1G06180.1 63.793 116 42 0 1 116 1 116 5.93e-50 167
Msa0090900 AT3G48920.1 61.111 126 47 2 9 132 15 140 1.04e-49 167
Msa0090900 AT3G12820.1 62.393 117 44 0 3 119 5 121 1.80e-48 163
Msa0090900 AT1G56160.1 63.478 115 42 0 2 116 4 118 2.75e-48 164
Msa0090900 AT4G25560.1 66.055 109 37 0 10 118 8 116 3.48e-48 164
Msa0090900 AT1G79180.1 62.069 116 44 0 3 118 5 120 5.66e-48 164
Msa0090900 AT5G52260.1 68.182 110 35 0 9 118 9 118 6.37e-48 163
Msa0090900 AT5G26660.2 80.899 89 17 0 45 133 14 102 6.42e-48 164
Msa0090900 AT1G16490.1 41.202 233 118 4 2 230 4 221 6.97e-48 163
Msa0090900 AT3G23250.1 50.318 157 70 3 1 157 1 149 1.60e-47 162
Msa0090900 AT3G62610.1 62.069 116 44 0 1 116 1 116 2.50e-46 161
Msa0090900 AT3G47600.1 61.017 118 46 0 1 118 1 118 1.50e-45 159
Msa0090900 AT2G47460.1 62.069 116 44 0 1 116 1 116 1.62e-45 159
Msa0090900 AT5G35550.1 43.961 207 90 4 9 211 11 195 1.70e-45 156
Msa0090900 AT5G62470.2 61.864 118 45 0 1 118 1 118 2.37e-45 159
Msa0090900 AT5G49330.1 55.072 138 61 1 1 137 1 138 4.01e-45 157
Msa0090900 AT1G74650.1 60.684 117 46 0 1 117 1 117 5.00e-45 157
Msa0090900 AT5G57620.1 57.627 118 49 1 1 117 1 118 5.20e-45 157
Msa0090900 AT5G65790.1 57.500 120 50 1 1 119 1 120 5.52e-45 158
Msa0090900 AT5G23000.1 58.475 118 48 1 1 117 1 118 7.29e-45 157
Msa0090900 AT1G08810.1 59.016 122 50 0 1 122 1 122 8.58e-45 155
Msa0090900 AT3G49690.1 57.500 120 50 1 1 119 1 120 1.63e-44 155
Msa0090900 AT3G28910.1 48.276 174 87 2 1 174 1 171 2.76e-44 155
Msa0090900 AT5G14750.1 60.577 104 41 0 13 116 17 120 4.70e-44 150
Msa0090900 AT5G62470.1 61.864 118 44 1 1 118 1 117 1.45e-43 154
Msa0090900 AT4G37780.1 55.725 131 54 3 1 129 1 129 5.01e-43 151
Msa0090900 AT5G40330.1 59.615 104 42 0 13 116 13 116 9.93e-43 148
Msa0090900 AT2G36890.1 51.969 127 60 1 1 126 1 127 1.12e-42 150
Msa0090900 AT2G36890.2 51.969 127 60 1 1 126 42 168 1.75e-42 150
Msa0090900 AT3G27920.1 55.556 108 48 0 10 117 12 119 4.78e-42 146
Msa0090900 AT5G52600.1 50.000 134 58 1 9 133 9 142 2.10e-41 144
Msa0090900 AT3G01530.1 58.095 105 44 0 12 116 25 129 5.55e-41 143
Msa0090900 AT1G79180.2 48.322 149 44 1 3 118 5 153 6.21e-41 146
Msa0090900 AT3G30210.1 47.337 169 68 3 13 181 28 175 3.05e-40 143
Msa0090900 AT4G13480.1 53.077 130 51 1 8 137 2 121 3.49e-40 142
Msa0090900 AT5G40350.1 55.455 110 49 0 11 120 16 125 6.14e-40 140
Msa0090900 AT3G24310.1 57.407 108 46 0 8 115 14 121 9.45e-40 141
Msa0090900 AT5G55020.1 58.182 110 45 1 12 121 26 134 3.24e-39 145
Msa0090900 AT4G26930.1 56.364 110 47 1 12 121 19 127 7.61e-39 142
Msa0090900 AT5G06100.1 57.547 106 45 0 10 115 30 135 9.74e-39 143
Msa0090900 AT3G27810.1 48.062 129 62 1 11 134 19 147 1.18e-38 137
Msa0090900 AT5G59780.3 54.630 108 49 0 8 115 4 111 1.37e-38 137
Msa0090900 AT2G32460.2 50.794 126 51 1 8 122 2 127 1.67e-38 143
Msa0090900 AT2G32460.1 51.613 124 49 1 10 122 16 139 2.02e-38 143
Msa0090900 AT3G11440.2 56.731 104 45 0 12 115 41 144 2.38e-38 142
Msa0090900 AT1G48000.1 43.791 153 77 2 11 161 31 176 3.26e-38 137
Msa0090900 AT5G06100.5 57.547 106 45 0 10 115 30 135 4.19e-38 142
Msa0090900 AT5G06100.2 57.547 106 45 0 10 115 30 135 4.19e-38 142
Msa0090900 AT5G06100.3 57.547 106 45 0 10 115 30 135 4.19e-38 142
Msa0090900 AT5G06100.4 57.547 106 45 0 10 115 30 135 4.19e-38 142
Msa0090900 AT3G46130.1 54.206 107 49 0 13 119 10 116 8.30e-38 136
Msa0090900 AT3G11440.3 56.731 104 45 0 12 115 41 144 1.35e-37 142
Msa0090900 AT3G11440.4 56.731 104 45 0 12 115 41 144 1.35e-37 142
Msa0090900 AT3G11440.1 56.731 104 45 0 12 115 41 144 1.35e-37 142
Msa0090900 AT2G26960.1 46.763 139 62 2 8 135 16 153 3.25e-37 139
Msa0090900 AT1G68320.1 51.695 118 57 0 10 127 17 134 7.88e-37 134
Msa0090900 AT1G25340.1 52.174 115 55 0 13 127 19 133 1.87e-36 133
Msa0090900 AT1G66370.1 55.769 104 46 0 12 115 8 111 2.03e-35 129
Msa0090900 AT3G53200.1 51.351 111 54 0 9 119 6 116 1.84e-34 127
Msa0090900 AT3G12820.2 73.611 72 19 0 48 119 2 73 2.23e-34 125
Msa0090900 AT2G47190.1 50.000 104 52 0 12 115 20 123 5.77e-34 126
Msa0090900 AT1G66380.1 58.654 104 43 0 12 115 8 111 2.12e-33 121
Msa0090900 AT2G26950.1 46.087 115 61 1 7 121 11 124 2.22e-33 127
Msa0090900 AT3G06490.1 57.282 103 44 0 12 114 19 121 3.62e-33 125
Msa0090900 AT1G56650.1 50.388 129 56 1 12 132 8 136 7.21e-33 123
Msa0090900 AT5G35550.2 42.614 176 75 4 40 211 45 198 7.43e-33 123
Msa0090900 AT3G60460.1 51.402 107 51 1 9 114 8 114 6.55e-32 122
Msa0090900 AT1G66390.1 56.604 106 46 0 10 115 6 111 1.18e-31 119
Msa0090900 AT1G25340.2 49.565 115 53 1 13 127 19 128 1.26e-31 120
Msa0090900 AT1G25340.3 49.565 115 53 1 13 127 19 128 2.26e-31 120
Msa0090900 AT5G49620.1 54.369 103 47 0 12 114 26 128 4.75e-31 119
Msa0090900 AT5G14750.3 68.116 69 22 0 48 116 18 86 1.22e-30 114
Msa0090900 AT3G47600.2 50.847 118 56 1 45 160 39 156 7.33e-30 117
Msa0090900 AT1G18960.1 46.154 117 58 3 14 129 10 122 5.13e-29 114
Msa0090900 AT3G46130.3 60.526 76 30 0 44 119 9 84 1.20e-28 111
Msa0090900 AT3G46130.4 61.333 75 29 0 45 119 20 94 4.01e-28 110
Msa0090900 AT5G59780.2 61.333 75 29 0 45 119 20 94 4.70e-28 109
Msa0090900 AT5G40350.2 57.895 76 32 0 45 120 5 80 8.05e-28 107
Msa0090900 AT5G49620.2 47.863 117 47 1 12 114 26 142 1.49e-27 110
Msa0090900 AT5G02320.3 47.863 117 58 2 1 116 54 168 1.66e-27 112
Msa0090900 AT5G02320.1 50.000 110 52 2 8 116 121 228 2.22e-27 113
Msa0090900 AT5G02320.2 50.000 110 52 2 8 116 121 228 2.22e-27 113
Msa0090900 AT1G22640.3 56.962 79 32 1 58 136 1 77 3.61e-27 106
Msa0090900 AT3G27810.2 47.368 95 45 1 45 134 4 98 6.74e-27 105
Msa0090900 AT3G27785.1 44.444 108 57 2 9 115 184 289 7.74e-27 110
Msa0090900 AT4G18770.1 36.242 149 87 3 9 156 212 353 3.09e-26 108
Msa0090900 AT2G39880.1 42.466 146 75 4 14 158 50 187 5.55e-26 107
Msa0090900 AT1G71030.2 58.442 77 32 0 51 127 5 81 5.58e-26 102
Msa0090900 AT1G71030.1 55.952 84 36 1 44 127 13 95 8.62e-26 102
Msa0090900 AT3G53200.2 60.000 75 30 0 45 119 9 83 1.42e-25 102
Msa0090900 AT3G09370.1 47.273 110 55 2 7 115 123 230 2.75e-25 106
Msa0090900 AT3G09370.2 47.273 110 55 2 7 115 128 235 2.82e-25 106
Msa0090900 AT3G09370.3 45.690 116 60 2 1 115 130 243 5.13e-25 105
Msa0090900 AT1G69560.1 38.760 129 76 2 9 136 102 228 5.84e-25 103
Msa0090900 AT5G67300.1 48.544 103 50 2 14 115 6 106 7.49e-25 102
Msa0090900 AT1G69560.2 38.760 129 76 2 9 136 118 244 8.11e-25 103
Msa0090900 AT5G58850.1 44.037 109 58 2 12 119 103 209 1.36e-24 103
Msa0090900 AT1G66380.3 59.740 77 31 0 39 115 2 78 3.42e-24 95.5
Msa0090900 AT4G32730.5 44.545 110 58 2 8 116 81 188 4.16e-24 103
Msa0090900 AT4G32730.4 44.545 110 58 2 8 116 81 188 4.16e-24 103
Msa0090900 AT4G32730.3 44.545 110 58 2 8 116 81 188 4.16e-24 103
Msa0090900 AT4G32730.2 44.545 110 58 2 8 116 81 188 4.16e-24 103
Msa0090900 AT3G55730.1 50.485 103 48 2 14 115 56 156 4.49e-24 102
Msa0090900 AT5G11510.3 44.545 110 58 2 8 116 75 182 4.68e-24 103
Msa0090900 AT5G11510.1 44.545 110 58 2 8 116 75 182 4.68e-24 103
Msa0090900 AT5G11510.4 44.545 110 58 2 8 116 75 182 4.68e-24 103
Msa0090900 AT4G32730.1 44.545 110 58 2 8 116 81 188 4.82e-24 103
Msa0090900 AT1G17950.1 33.333 174 97 6 14 185 5 161 5.59e-24 99.4
Msa0090900 AT5G11510.2 44.545 110 58 2 8 116 75 182 6.29e-24 103
Msa0090900 AT5G11510.5 44.545 110 58 2 8 116 75 182 7.12e-24 103
Msa0090900 AT5G40360.1 38.679 106 64 1 9 114 153 257 1.15e-23 100
Msa0090900 AT5G11050.1 42.991 107 58 2 14 119 105 209 1.16e-23 101
Msa0090900 AT3G09230.1 47.619 105 52 2 14 117 55 157 1.44e-23 100
Msa0090900 AT4G37260.1 48.148 108 53 2 14 120 13 118 1.49e-23 99.8
Msa0090900 AT3G50060.1 48.544 103 50 2 14 115 6 106 2.22e-23 98.6
Msa0090900 AT1G26780.1 43.810 105 56 2 12 115 96 198 2.78e-23 98.2
Msa0090900 AT2G23290.1 50.485 103 48 2 14 115 13 113 3.45e-23 98.2
Msa0090900 AT1G26780.2 43.810 105 56 2 12 115 96 198 5.85e-23 98.6
Msa0090900 AT2G25230.1 36.429 140 76 4 9 137 21 158 1.64e-22 94.7
Msa0090900 AT3G23250.2 48.000 100 44 3 58 157 1 92 3.74e-22 93.6
Msa0090900 AT5G14750.4 62.712 59 22 0 58 116 1 59 1.68e-21 89.7
Msa0090900 AT5G14750.2 62.712 59 22 0 58 116 1 59 1.68e-21 89.7
Msa0090900 AT3G29020.1 39.252 107 62 2 14 119 65 169 4.14e-21 90.9
Msa0090900 AT3G29020.2 39.252 107 62 2 14 119 67 171 5.12e-21 92.4
Msa0090900 AT1G73410.1 42.718 103 56 2 14 115 6 106 1.31e-20 89.7
Msa0090900 AT5G17800.1 41.176 102 59 1 14 115 93 193 1.32e-20 91.3
Msa0090900 AT1G66380.2 56.250 80 35 0 10 89 6 85 3.69e-20 85.1
Msa0090900 AT1G73410.2 42.718 103 56 2 14 115 6 106 3.93e-20 87.4
Msa0090900 AT4G33450.1 38.655 119 67 3 1 115 3 119 2.50e-19 86.7
Msa0090900 AT4G00540.2 42.478 113 59 3 8 116 97 207 8.99e-19 87.0
Msa0090900 AT4G00540.1 42.478 113 59 3 8 116 95 205 1.64e-18 86.7
Msa0090900 AT2G37630.1 32.877 146 76 2 17 160 7 132 2.50e-18 85.5
Msa0090900 AT5G61420.1 69.388 49 15 0 81 129 2 50 8.12e-18 82.8
Msa0090900 AT5G40430.1 35.398 113 69 3 9 120 49 158 1.01e-17 82.0
Msa0090900 AT2G02820.1 35.294 119 75 2 4 121 19 136 9.11e-16 78.6
Msa0090900 AT2G02820.3 35.294 119 75 2 4 121 19 136 9.55e-16 77.4
Msa0090900 AT2G02820.2 35.294 119 75 2 4 121 19 136 1.11e-15 78.2
Msa0090900 AT5G39700.1 35.135 111 71 1 9 119 51 160 1.88e-15 74.3
Msa0090900 AT4G25560.2 62.000 50 19 0 69 118 1 50 1.00e-14 72.8
Msa0090900 AT1G14350.2 35.238 105 67 1 17 121 28 131 1.63e-14 74.7
Msa0090900 AT1G14350.1 35.238 105 67 1 17 121 28 131 1.63e-14 74.7
Msa0090900 AT1G74430.2 59.615 52 21 0 77 128 8 59 2.11e-14 71.6
Msa0090900 AT5G15310.3 70.732 41 12 0 88 128 9 49 3.14e-14 72.0
Msa0090900 AT4G28110.2 63.415 41 15 0 88 128 4 44 6.32e-14 70.1
Msa0090900 AT1G22640.2 57.143 49 19 1 88 136 16 62 1.54e-13 68.9
Msa0090900 AT5G14340.2 39.785 93 51 3 88 178 10 99 2.15e-13 68.2
Msa0090900 AT5G59780.1 55.319 47 21 0 73 119 4 50 2.20e-12 65.1
Msa0090900 AT3G46130.2 55.319 47 21 0 73 119 4 50 2.22e-12 65.5
Msa0090900 AT3G18100.1 34.375 96 62 1 13 108 545 639 2.39e-12 68.6
Msa0090900 AT3G18100.3 28.261 138 89 3 13 146 497 628 2.68e-12 68.6
Msa0090900 AT3G18100.4 34.375 96 62 1 13 108 384 478 2.78e-12 68.2
Msa0090900 AT3G18100.2 34.375 96 62 1 13 108 332 426 3.67e-12 67.8
Msa0090900 AT3G28910.2 41.837 98 54 2 77 174 1 95 1.37e-11 64.3
Msa0090900 AT1G74650.3 65.854 41 14 0 77 117 1 41 4.20e-11 63.2

Find 57 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAATACAGTTCATAATAAT+TGG 0.135565 1_2:+73022243 None:intergenic
CACCAAAGGAGAACTAAATT+TGG 0.229289 1_2:+73022508 None:intergenic
AAGAGCTTCTTATCTTCTTC+AGG 0.255579 1_2:+73023695 None:intergenic
TTAATTAATCACTATAATAT+TGG 0.271272 1_2:-73022740 Msa0090900:CDS
TTCAATTACATAACCATGTT+TGG 0.311883 1_2:-73023674 Msa0090900:CDS
TCTTCTGACAGAGATGTTAA+AGG 0.315827 1_2:+73022305 None:intergenic
GACAGTGGCATTATCATTGA+TGG 0.336941 1_2:+73022848 None:intergenic
TTAAGATTACCAGCTAGTTT+AGG 0.344561 1_2:+73023629 None:intergenic
AAATACAGTTCATAATAATT+GGG 0.349576 1_2:+73022244 None:intergenic
TTCCAAATTTAGTTCTCCTT+TGG 0.366592 1_2:-73022510 Msa0090900:CDS
CAATAATGAATCACTTATAA+AGG 0.375777 1_2:-73022885 Msa0090900:CDS
TTCATGAAGCACTTGGAAAT+AGG 0.380038 1_2:-73023118 Msa0090900:intron
AAGGCATTGAAGAGAAGAAT+TGG 0.404191 1_2:+73022570 None:intergenic
AAGTGATTCATTATTGATCA+AGG 0.424353 1_2:+73022892 None:intergenic
CATCAACAAGACAGATTCAA+TGG 0.439637 1_2:-73022342 Msa0090900:CDS
TGAGATGGATAAACTATTTG+AGG 0.450225 1_2:-73023196 Msa0090900:CDS
ATCAAGGGTTTATGTGTAGC+TGG 0.461421 1_2:+73022908 None:intergenic
TTCACTTCAAACTGCAACAA+AGG 0.467959 1_2:+73022389 None:intergenic
ATTAATCACTATAATATTGG+TGG 0.467980 1_2:-73022737 Msa0090900:CDS
ATCTCATTATCTGTTCTCCC+TGG 0.474483 1_2:+73022986 None:intergenic
TACATAACCATGTTTGGTGT+TGG 0.474556 1_2:-73023668 Msa0090900:CDS
TGGATAAACTATTTGAGGCC+TGG 0.498244 1_2:-73023191 Msa0090900:CDS
CAAATTGCATCACAATTACC+AGG 0.502920 1_2:-73023004 Msa0090900:CDS
AGTGATTCATTATTGATCAA+GGG 0.510521 1_2:+73022893 None:intergenic
CCATGTTTGGTGTTGGATGT+TGG 0.512330 1_2:-73023661 Msa0090900:CDS
TGAAAATTACAATAAGCTGT+TGG 0.514835 1_2:-73022414 Msa0090900:CDS
AGTTCAGTTCCTAAACTAGC+TGG 0.517760 1_2:-73023638 Msa0090900:intron
TGTGTAGCTAAAGTCCTTTG+AGG 0.519345 1_2:+73022815 None:intergenic
AGAGCTTCTTATCTTCTTCA+GGG 0.522102 1_2:+73023696 None:intergenic
TTGAGGCCTGGTTTGAAGAG+AGG 0.523450 1_2:-73023179 Msa0090900:CDS
GATTAATGAAAATGCCTCAT+GGG 0.535807 1_2:-73022441 Msa0090900:CDS
CCAACATCCAACACCAAACA+TGG 0.541756 1_2:+73023661 None:intergenic
GTCAATCTTCATGAAGCACT+TGG 0.545016 1_2:-73023125 Msa0090900:CDS
AATGGATCAAAATCAAATGT+TGG 0.545963 1_2:+73022668 None:intergenic
TATGAGTTGCAGGGTTGCAA+AGG 0.546405 1_2:-73023238 Msa0090900:intron
AATTGTAATTGACTTGGCTG+AGG 0.553273 1_2:+73022605 None:intergenic
ATCACTTATAAAGGAAGAGA+AGG 0.553443 1_2:-73022876 Msa0090900:CDS
ATACTTAAATTGTAGTGCAA+TGG 0.557404 1_2:+73022650 None:intergenic
TGATTAATGAAAATGCCTCA+TGG 0.558714 1_2:-73022442 Msa0090900:CDS
ACTTCAAATTGTAATTGACT+TGG 0.559630 1_2:+73022599 None:intergenic
GGATCATCATCTTTAACAGA+AGG 0.562744 1_2:-73022716 Msa0090900:CDS
TGACAGAGATGTTAAAGGAT+AGG 0.564100 1_2:+73022310 None:intergenic
AATGAAAATGCCTCATGGGA+AGG 0.570813 1_2:-73022437 Msa0090900:CDS
AACATTCCTCTCTTCAAACC+AGG 0.578887 1_2:+73023173 None:intergenic
AATACAGTTCATAATAATTG+GGG 0.584426 1_2:+73022245 None:intergenic
AGGAATGTTCTCAAAACAAG+AGG 0.587388 1_2:-73023159 Msa0090900:CDS
TGAGGTTGAGATTGAGACAG+TGG 0.588035 1_2:+73022833 None:intergenic
GAAAGAGCTGTAGATTGAGA+TGG 0.600654 1_2:-73023211 Msa0090900:CDS
TGCTTCTGAATATTCATGTG+AGG 0.611193 1_2:+73022778 None:intergenic
GAGCTTCTTATCTTCTTCAG+GGG 0.611549 1_2:+73023697 None:intergenic
TGTCTCAATCTCAACCTCAA+AGG 0.619555 1_2:-73022829 Msa0090900:CDS
TCACTTTCAATATTCACCAA+AGG 0.621840 1_2:+73022494 None:intergenic
AAGAAGAAACTAATGAAACA+AGG 0.624080 1_2:-73022938 Msa0090900:CDS
AGAAGAAACTAATGAAACAA+GGG 0.641105 1_2:-73022937 Msa0090900:CDS
GTTGCAGGGTTGCAAAGGTG+TGG 0.656350 1_2:-73023233 Msa0090900:intron
TTGTCTGAACTATTTAGACA+AGG 0.673798 1_2:+73022551 None:intergenic
AAATTGCATCACAATTACCA+GGG 0.713478 1_2:-73023003 Msa0090900:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATTAATCACTATAATAT+TGG - chr1_2:73023262-73023281 Msa0090900:intron 10.0%
!! TTAATTAATCACTATAATAT+TGG - chr1_2:73023262-73023281 Msa0090900:intron 10.0%
!! TCATAAAAATTATATATGCA+TGG + chr1_2:73022749-73022768 None:intergenic 15.0%
!!! ATAATGAGATAAAAAACTTT+TGG - chr1_2:73023029-73023048 Msa0090900:intron 15.0%
!! TCATAAAAATTATATATGCA+TGG + chr1_2:73022749-73022768 None:intergenic 15.0%
!!! ATAATGAGATAAAAAACTTT+TGG - chr1_2:73023029-73023048 Msa0090900:intron 15.0%
!! TTAAAGCAAAAACTAAGAAA+AGG - chr1_2:73022274-73022293 Msa0090900:CDS 20.0%
!! AAAAACTAAGAAAAGGTTTA+TGG - chr1_2:73022281-73022300 Msa0090900:CDS 20.0%
!!! TAGTTGCTATATATTTTGTT+GGG + chr1_2:73022448-73022467 None:intergenic 20.0%
!!! ATAGTTGCTATATATTTTGT+TGG + chr1_2:73022449-73022468 None:intergenic 20.0%
!! ATGGTAAAGGAAAAAATTTA+AGG + chr1_2:73022730-73022749 None:intergenic 20.0%
!! AAATTATATATGCATGGTAA+AGG + chr1_2:73022743-73022762 None:intergenic 20.0%
!!! ATATAATTTTTATGAGTTGC+AGG - chr1_2:73022754-73022773 Msa0090900:CDS 20.0%
!!! TATAATTTTTATGAGTTGCA+GGG - chr1_2:73022755-73022774 Msa0090900:CDS 20.0%
!! CAATAATGAATCACTTATAA+AGG - chr1_2:73023117-73023136 Msa0090900:intron 20.0%
!! ATTAATCACTATAATATTGG+TGG - chr1_2:73023265-73023284 Msa0090900:intron 20.0%
!! TTAAAGCAAAAACTAAGAAA+AGG - chr1_2:73022274-73022293 Msa0090900:CDS 20.0%
!! AAAAACTAAGAAAAGGTTTA+TGG - chr1_2:73022281-73022300 Msa0090900:CDS 20.0%
!!! TAGTTGCTATATATTTTGTT+GGG + chr1_2:73022448-73022467 None:intergenic 20.0%
!!! ATAGTTGCTATATATTTTGT+TGG + chr1_2:73022449-73022468 None:intergenic 20.0%
!! ATGGTAAAGGAAAAAATTTA+AGG + chr1_2:73022730-73022749 None:intergenic 20.0%
!! AAATTATATATGCATGGTAA+AGG + chr1_2:73022743-73022762 None:intergenic 20.0%
!!! ATATAATTTTTATGAGTTGC+AGG - chr1_2:73022754-73022773 Msa0090900:CDS 20.0%
!!! TATAATTTTTATGAGTTGCA+GGG - chr1_2:73022755-73022774 Msa0090900:CDS 20.0%
!! CAATAATGAATCACTTATAA+AGG - chr1_2:73023117-73023136 Msa0090900:intron 20.0%
!! ATTAATCACTATAATATTGG+TGG - chr1_2:73023265-73023284 Msa0090900:intron 20.0%
!!! TAGTTTTTGCTTTAAACAAC+AGG + chr1_2:73022269-73022288 None:intergenic 25.0%
! TTCAATTACATAACCATGTT+TGG - chr1_2:73022328-73022347 Msa0090900:CDS 25.0%
! AAGAAGAAACTAATGAAACA+AGG - chr1_2:73023064-73023083 Msa0090900:intron 25.0%
! AGAAGAAACTAATGAAACAA+GGG - chr1_2:73023065-73023084 Msa0090900:intron 25.0%
! AGTGATTCATTATTGATCAA+GGG + chr1_2:73023112-73023131 None:intergenic 25.0%
! AAGTGATTCATTATTGATCA+AGG + chr1_2:73023113-73023132 None:intergenic 25.0%
! AATGGATCAAAATCAAATGT+TGG + chr1_2:73023337-73023356 None:intergenic 25.0%
! ATACTTAAATTGTAGTGCAA+TGG + chr1_2:73023355-73023374 None:intergenic 25.0%
! ACTTCAAATTGTAATTGACT+TGG + chr1_2:73023406-73023425 None:intergenic 25.0%
! TGAAAATTACAATAAGCTGT+TGG - chr1_2:73023588-73023607 Msa0090900:intron 25.0%
!!! TAGTTTTTGCTTTAAACAAC+AGG + chr1_2:73022269-73022288 None:intergenic 25.0%
! TTCAATTACATAACCATGTT+TGG - chr1_2:73022328-73022347 Msa0090900:CDS 25.0%
! AAGAAGAAACTAATGAAACA+AGG - chr1_2:73023064-73023083 Msa0090900:intron 25.0%
! AGAAGAAACTAATGAAACAA+GGG - chr1_2:73023065-73023084 Msa0090900:intron 25.0%
! AGTGATTCATTATTGATCAA+GGG + chr1_2:73023112-73023131 None:intergenic 25.0%
! AAGTGATTCATTATTGATCA+AGG + chr1_2:73023113-73023132 None:intergenic 25.0%
! AATGGATCAAAATCAAATGT+TGG + chr1_2:73023337-73023356 None:intergenic 25.0%
! ATACTTAAATTGTAGTGCAA+TGG + chr1_2:73023355-73023374 None:intergenic 25.0%
! ACTTCAAATTGTAATTGACT+TGG + chr1_2:73023406-73023425 None:intergenic 25.0%
! TGAAAATTACAATAAGCTGT+TGG - chr1_2:73023588-73023607 Msa0090900:intron 25.0%
! TTAAGATTACCAGCTAGTTT+AGG + chr1_2:73022376-73022395 None:intergenic 30.0%
ATGTCATACATGCATGTTTA+TGG + chr1_2:73022411-73022430 None:intergenic 30.0%
TGAGATGGATAAACTATTTG+AGG - chr1_2:73022806-73022825 Msa0090900:CDS 30.0%
TTAATTTCAAATGATGCCTC+AGG - chr1_2:73022969-73022988 Msa0090900:CDS 30.0%
AAATTGCATCACAATTACCA+GGG - chr1_2:73022999-73023018 Msa0090900:CDS 30.0%
ATCACTTATAAAGGAAGAGA+AGG - chr1_2:73023126-73023145 Msa0090900:CDS 30.0%
TTGTCTGAACTATTTAGACA+AGG + chr1_2:73023454-73023473 None:intergenic 30.0%
!! TTCCAAATTTAGTTCTCCTT+TGG - chr1_2:73023492-73023511 Msa0090900:intron 30.0%
TCACTTTCAATATTCACCAA+AGG + chr1_2:73023511-73023530 None:intergenic 30.0%
TGATTAATGAAAATGCCTCA+TGG - chr1_2:73023560-73023579 Msa0090900:intron 30.0%
GATTAATGAAAATGCCTCAT+GGG - chr1_2:73023561-73023580 Msa0090900:intron 30.0%
! TTAAGATTACCAGCTAGTTT+AGG + chr1_2:73022376-73022395 None:intergenic 30.0%
ATGTCATACATGCATGTTTA+TGG + chr1_2:73022411-73022430 None:intergenic 30.0%
TGAGATGGATAAACTATTTG+AGG - chr1_2:73022806-73022825 Msa0090900:CDS 30.0%
TTAATTTCAAATGATGCCTC+AGG - chr1_2:73022969-73022988 Msa0090900:CDS 30.0%
AAATTGCATCACAATTACCA+GGG - chr1_2:73022999-73023018 Msa0090900:CDS 30.0%
ATCACTTATAAAGGAAGAGA+AGG - chr1_2:73023126-73023145 Msa0090900:CDS 30.0%
TTGTCTGAACTATTTAGACA+AGG + chr1_2:73023454-73023473 None:intergenic 30.0%
!! TTCCAAATTTAGTTCTCCTT+TGG - chr1_2:73023492-73023511 Msa0090900:intron 30.0%
TCACTTTCAATATTCACCAA+AGG + chr1_2:73023511-73023530 None:intergenic 30.0%
TGATTAATGAAAATGCCTCA+TGG - chr1_2:73023560-73023579 Msa0090900:intron 30.0%
GATTAATGAAAATGCCTCAT+GGG - chr1_2:73023561-73023580 Msa0090900:intron 30.0%
AGAGCTTCTTATCTTCTTCA+GGG + chr1_2:73022309-73022328 None:intergenic 35.0%
AAGAGCTTCTTATCTTCTTC+AGG + chr1_2:73022310-73022329 None:intergenic 35.0%
!! TACATAACCATGTTTGGTGT+TGG - chr1_2:73022334-73022353 Msa0090900:CDS 35.0%
! TGAGAATAGGATGAAAGTGT+GGG + chr1_2:73022535-73022554 None:intergenic 35.0%
AGGAATGTTCTCAAAACAAG+AGG - chr1_2:73022843-73022862 Msa0090900:CDS 35.0%
! TTCATGAAGCACTTGGAAAT+AGG - chr1_2:73022884-73022903 Msa0090900:CDS 35.0%
CAAATTGCATCACAATTACC+AGG - chr1_2:73022998-73023017 Msa0090900:CDS 35.0%
TGCTTCTGAATATTCATGTG+AGG + chr1_2:73023227-73023246 None:intergenic 35.0%
GGATCATCATCTTTAACAGA+AGG - chr1_2:73023286-73023305 Msa0090900:intron 35.0%
!! AATTGTAATTGACTTGGCTG+AGG + chr1_2:73023400-73023419 None:intergenic 35.0%
!! AAGGCATTGAAGAGAAGAAT+TGG + chr1_2:73023435-73023454 None:intergenic 35.0%
CACCAAAGGAGAACTAAATT+TGG + chr1_2:73023497-73023516 None:intergenic 35.0%
TTCACTTCAAACTGCAACAA+AGG + chr1_2:73023616-73023635 None:intergenic 35.0%
CATCAACAAGACAGATTCAA+TGG - chr1_2:73023660-73023679 Msa0090900:CDS 35.0%
TGACAGAGATGTTAAAGGAT+AGG + chr1_2:73023695-73023714 None:intergenic 35.0%
TCTTCTGACAGAGATGTTAA+AGG + chr1_2:73023700-73023719 None:intergenic 35.0%
AGAGCTTCTTATCTTCTTCA+GGG + chr1_2:73022309-73022328 None:intergenic 35.0%
AAGAGCTTCTTATCTTCTTC+AGG + chr1_2:73022310-73022329 None:intergenic 35.0%
!! TACATAACCATGTTTGGTGT+TGG - chr1_2:73022334-73022353 Msa0090900:CDS 35.0%
! TGAGAATAGGATGAAAGTGT+GGG + chr1_2:73022535-73022554 None:intergenic 35.0%
AGGAATGTTCTCAAAACAAG+AGG - chr1_2:73022843-73022862 Msa0090900:CDS 35.0%
! TTCATGAAGCACTTGGAAAT+AGG - chr1_2:73022884-73022903 Msa0090900:CDS 35.0%
CAAATTGCATCACAATTACC+AGG - chr1_2:73022998-73023017 Msa0090900:CDS 35.0%
TGCTTCTGAATATTCATGTG+AGG + chr1_2:73023227-73023246 None:intergenic 35.0%
GGATCATCATCTTTAACAGA+AGG - chr1_2:73023286-73023305 Msa0090900:intron 35.0%
!! AATTGTAATTGACTTGGCTG+AGG + chr1_2:73023400-73023419 None:intergenic 35.0%
!! AAGGCATTGAAGAGAAGAAT+TGG + chr1_2:73023435-73023454 None:intergenic 35.0%
CACCAAAGGAGAACTAAATT+TGG + chr1_2:73023497-73023516 None:intergenic 35.0%
TTCACTTCAAACTGCAACAA+AGG + chr1_2:73023616-73023635 None:intergenic 35.0%
CATCAACAAGACAGATTCAA+TGG - chr1_2:73023660-73023679 Msa0090900:CDS 35.0%
TGACAGAGATGTTAAAGGAT+AGG + chr1_2:73023695-73023714 None:intergenic 35.0%
TCTTCTGACAGAGATGTTAA+AGG + chr1_2:73023700-73023719 None:intergenic 35.0%
GAGCTTCTTATCTTCTTCAG+GGG + chr1_2:73022308-73022327 None:intergenic 40.0%
AGTTCAGTTCCTAAACTAGC+TGG - chr1_2:73022364-73022383 Msa0090900:CDS 40.0%
GTGAGAATAGGATGAAAGTG+TGG + chr1_2:73022536-73022555 None:intergenic 40.0%
GAGAGAGTGAAAGTGAGAAT+AGG + chr1_2:73022548-73022567 None:intergenic 40.0%
GAAAGAGCTGTAGATTGAGA+TGG - chr1_2:73022791-73022810 Msa0090900:CDS 40.0%
! TGGATAAACTATTTGAGGCC+TGG - chr1_2:73022811-73022830 Msa0090900:CDS 40.0%
AACATTCCTCTCTTCAAACC+AGG + chr1_2:73022832-73022851 None:intergenic 40.0%
! GTCAATCTTCATGAAGCACT+TGG - chr1_2:73022877-73022896 Msa0090900:CDS 40.0%
ATTTCAAATGATGCCTCAGG+TGG - chr1_2:73022972-73022991 Msa0090900:CDS 40.0%
TTTCAAATGATGCCTCAGGT+GGG - chr1_2:73022973-73022992 Msa0090900:CDS 40.0%
ATCTCATTATCTGTTCTCCC+TGG + chr1_2:73023019-73023038 None:intergenic 40.0%
ATCAAGGGTTTATGTGTAGC+TGG + chr1_2:73023097-73023116 None:intergenic 40.0%
GACAGTGGCATTATCATTGA+TGG + chr1_2:73023157-73023176 None:intergenic 40.0%
TGTCTCAATCTCAACCTCAA+AGG - chr1_2:73023173-73023192 Msa0090900:CDS 40.0%
TGTGTAGCTAAAGTCCTTTG+AGG + chr1_2:73023190-73023209 None:intergenic 40.0%
AATGAAAATGCCTCATGGGA+AGG - chr1_2:73023565-73023584 Msa0090900:intron 40.0%
! GTAATTTTCACCTTCCCATG+AGG + chr1_2:73023578-73023597 None:intergenic 40.0%
GAGCTTCTTATCTTCTTCAG+GGG + chr1_2:73022308-73022327 None:intergenic 40.0%
AGTTCAGTTCCTAAACTAGC+TGG - chr1_2:73022364-73022383 Msa0090900:CDS 40.0%
GTGAGAATAGGATGAAAGTG+TGG + chr1_2:73022536-73022555 None:intergenic 40.0%
GAGAGAGTGAAAGTGAGAAT+AGG + chr1_2:73022548-73022567 None:intergenic 40.0%
GAAAGAGCTGTAGATTGAGA+TGG - chr1_2:73022791-73022810 Msa0090900:CDS 40.0%
! TGGATAAACTATTTGAGGCC+TGG - chr1_2:73022811-73022830 Msa0090900:CDS 40.0%
AACATTCCTCTCTTCAAACC+AGG + chr1_2:73022832-73022851 None:intergenic 40.0%
! GTCAATCTTCATGAAGCACT+TGG - chr1_2:73022877-73022896 Msa0090900:CDS 40.0%
ATTTCAAATGATGCCTCAGG+TGG - chr1_2:73022972-73022991 Msa0090900:CDS 40.0%
TTTCAAATGATGCCTCAGGT+GGG - chr1_2:73022973-73022992 Msa0090900:CDS 40.0%
ATCTCATTATCTGTTCTCCC+TGG + chr1_2:73023019-73023038 None:intergenic 40.0%
ATCAAGGGTTTATGTGTAGC+TGG + chr1_2:73023097-73023116 None:intergenic 40.0%
GACAGTGGCATTATCATTGA+TGG + chr1_2:73023157-73023176 None:intergenic 40.0%
TGTCTCAATCTCAACCTCAA+AGG - chr1_2:73023173-73023192 Msa0090900:CDS 40.0%
TGTGTAGCTAAAGTCCTTTG+AGG + chr1_2:73023190-73023209 None:intergenic 40.0%
AATGAAAATGCCTCATGGGA+AGG - chr1_2:73023565-73023584 Msa0090900:intron 40.0%
! GTAATTTTCACCTTCCCATG+AGG + chr1_2:73023578-73023597 None:intergenic 40.0%
CCAACATCCAACACCAAACA+TGG + chr1_2:73022344-73022363 None:intergenic 45.0%
!! CCATGTTTGGTGTTGGATGT+TGG - chr1_2:73022341-73022360 Msa0090900:CDS 45.0%
TATGAGTTGCAGGGTTGCAA+AGG - chr1_2:73022764-73022783 Msa0090900:CDS 45.0%
TGAGGTTGAGATTGAGACAG+TGG + chr1_2:73023172-73023191 None:intergenic 45.0%
CCAACATCCAACACCAAACA+TGG + chr1_2:73022344-73022363 None:intergenic 45.0%
!! CCATGTTTGGTGTTGGATGT+TGG - chr1_2:73022341-73022360 Msa0090900:CDS 45.0%
TATGAGTTGCAGGGTTGCAA+AGG - chr1_2:73022764-73022783 Msa0090900:CDS 45.0%
TGAGGTTGAGATTGAGACAG+TGG + chr1_2:73023172-73023191 None:intergenic 45.0%
! TTGAGGCCTGGTTTGAAGAG+AGG - chr1_2:73022823-73022842 Msa0090900:CDS 50.0%
ATGCAATTTGAGCCCACCTG+AGG + chr1_2:73022988-73023007 None:intergenic 50.0%
! TTGAGGCCTGGTTTGAAGAG+AGG - chr1_2:73022823-73022842 Msa0090900:CDS 50.0%
ATGCAATTTGAGCCCACCTG+AGG + chr1_2:73022988-73023007 None:intergenic 50.0%
GTTGCAGGGTTGCAAAGGTG+TGG - chr1_2:73022769-73022788 Msa0090900:CDS 55.0%
GTTGCAGGGTTGCAAAGGTG+TGG - chr1_2:73022769-73022788 Msa0090900:CDS 55.0%
TTCTCCCGCGCGTTGCAGCA+CGG - chr1_2:73022590-73022609 Msa0090900:CDS 65.0%
TTCTCCCGCGCGTTGCAGCA+CGG - chr1_2:73022590-73022609 Msa0090900:CDS 65.0%
ACCACCGTGCTGCAACGCGC+GGG + chr1_2:73022597-73022616 None:intergenic 70.0%
GACCACCGTGCTGCAACGCG+CGG + chr1_2:73022598-73022617 None:intergenic 70.0%
ACCACCGTGCTGCAACGCGC+GGG + chr1_2:73022597-73022616 None:intergenic 70.0%
GACCACCGTGCTGCAACGCG+CGG + chr1_2:73022598-73022617 None:intergenic 70.0%
TCCCGCGCGTTGCAGCACGG+TGG - chr1_2:73022593-73022612 Msa0090900:CDS 75.0%
TCCCGCGCGTTGCAGCACGG+TGG - chr1_2:73022593-73022612 Msa0090900:CDS 75.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 73022253 73023771 73022253 ID=Msa0090900;Name=Msa0090900
chr1_2 mRNA 73022253 73023771 73022253 ID=Msa0090900-mRNA-1;Parent=Msa0090900;Name=Msa0090900-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|3|0|347
chr1_2 exon 73023639 73023771 73023639 ID=Msa0090900-mRNA-1:exon:25466;Parent=Msa0090900-mRNA-1
chr1_2 exon 73023119 73023248 73023119 ID=Msa0090900-mRNA-1:exon:25465;Parent=Msa0090900-mRNA-1
chr1_2 exon 73022253 73023033 73022253 ID=Msa0090900-mRNA-1:exon:25464;Parent=Msa0090900-mRNA-1
chr1_2 CDS 73023639 73023771 73023639 ID=Msa0090900-mRNA-1:cds;Parent=Msa0090900-mRNA-1
chr1_2 CDS 73023119 73023248 73023119 ID=Msa0090900-mRNA-1:cds;Parent=Msa0090900-mRNA-1
chr1_2 CDS 73022253 73023033 73022253 ID=Msa0090900-mRNA-1:cds;Parent=Msa0090900-mRNA-1
Gene Sequence

>Msa0090900

ATGAGTCGTCATTCCTGTTGTTTAAAGCAAAAACTAAGAAAAGGTTTATGGTCCCCTGAAGAAGATAAGAAGCTCTTCAATTACATAACCATGTTTGGTGTTGGATGTTGGAGTTCAGTTCCTAAACTAGCTGGGTTGCAAAGGTGTGGAAAGAGCTGTAGATTGAGATGGATAAACTATTTGAGGCCTGGTTTGAAGAGAGGAATGTTCTCAAAACAAGAGGAAGATCTTATCGTCAATCTTCATGAAGCACTTGGAAATAGGTGGGCTCAAATTGCATCACAATTACCAGGGAGAACAGATAATGAGATAAAAAACTTTTGGAATTCAAGTTTGAAGAAGAAACTAATGAAACAAGGGATTGATCCAGCTACACATAAACCCTTGATCAATAATGAATCACTTATAAAGGAAGAGAAGGAAAAACCATCAATGATAATGCCACTGTCTCAATCTCAACCTCAAAGGACTTTAGCTACACACACAAAGCTAGAATCCTCACATGAATATTCAGAAGCACTTCTAATGAGTGATTTAATTAATCACTATAATATTGGTGGATCATCATCTTTAACAGAAGGTTCAAGAAAATTTGTTATGAATAAGCCAACATTTGATTTTGATCCATTGCACTACAATTTAAGTATGACTACGAGTAATTATTATCAGCCTCAGCCAAGTCAATTACAATTTGAAGTACAGAACCAATTCTTCTCTTCAATGCCTTGTCTAAATAGTTCAGACAACATCAACAAGAACTCATTTTCCAAATTTAGTTCTCCTTTGGTGAATATTGAAAGTGATCGTGATTATTATCAAATAATGAGCAACATGATTAATGAAAATGCCTCATGGGAAGGTGAAAATTACAATAAGCTGTTGGATCCTTTGTTGCAGTTTGAAGTGAATAATGCAGTAAAATGTGAAGAATACATCAACAAGACAGATTCAATGGATTTCAGTACCTATCCTTTAACATCTCTGTCAGAAGATCTAAGTAATATTGAAGCTAATAATTTTGATGTCTTTCCCCAATTATTATGA
Protein sequence

>Msa0090900

MSRHSCCLKQKLRKGLWSPEEDKKLFNYITMFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPGLKRGMFSKQEEDLIVNLHEALGNRWAQIASQLPGRTDNEIKNFWNSSLKKKLMKQGIDPATHKPLINNESLIKEEKEKPSMIMPLSQSQPQRTLATHTKLESSHEYSEALLMSDLINHYNIGGSSSLTEGSRKFVMNKPTFDFDPLHYNLSMTTSNYYQPQPSQLQFEVQNQFFSSMPCLNSSDNINKNSFSKFSSPLVNIESDRDYYQIMSNMINENASWEGENYNKLLDPLLQFEVNNAVKCEEYINKTDSMDFSTYPLTSLSEDLSNIEANNFDVFPQLL*