Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0091540 | A0A396K4F7 | 72.487 | 189 | 48 | 2 | 156 | 342 | 1 | 187 | 2.22e-88 | 274 |
| Msa0091540 | A0A396K4F7 | 77.922 | 154 | 20 | 2 | 1 | 140 | 1 | 154 | 3.27e-76 | 243 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0091540 | TF | MADS-M-type |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0091540 | MtrunA17_Chr1g0212471 | 72.487 | 189 | 48 | 2 | 156 | 342 | 1 | 187 | 4.28e-92 | 274 |
| Msa0091540 | MtrunA17_Chr1g0212471 | 77.922 | 154 | 20 | 2 | 1 | 140 | 1 | 154 | 6.31e-80 | 243 |
| Msa0091540 | MtrunA17_Chr4g0022641 | 56.481 | 216 | 80 | 5 | 156 | 361 | 1 | 212 | 2.54e-74 | 235 |
| Msa0091540 | MtrunA17_Chr4g0022641 | 57.895 | 152 | 52 | 1 | 1 | 140 | 1 | 152 | 2.86e-55 | 186 |
| Msa0091540 | MtrunA17_Chr4g0059631 | 50.000 | 226 | 89 | 4 | 156 | 361 | 1 | 222 | 3.03e-62 | 199 |
| Msa0091540 | MtrunA17_Chr4g0059631 | 61.184 | 152 | 47 | 1 | 1 | 140 | 1 | 152 | 1.65e-56 | 185 |
| Msa0091540 | MtrunA17_Chr2g0303981 | 43.299 | 194 | 95 | 4 | 158 | 348 | 5 | 186 | 4.06e-45 | 153 |
| Msa0091540 | MtrunA17_Chr2g0303981 | 47.020 | 151 | 66 | 3 | 3 | 140 | 5 | 154 | 4.92e-40 | 140 |
| Msa0091540 | MtrunA17_Chr6g0457851 | 35.849 | 159 | 99 | 2 | 156 | 312 | 11 | 168 | 1.71e-30 | 119 |
| Msa0091540 | MtrunA17_Chr6g0457851 | 36.774 | 155 | 83 | 2 | 1 | 140 | 11 | 165 | 4.71e-30 | 118 |
| Msa0091540 | MtrunA17_Chr1g0212151 | 37.736 | 159 | 96 | 2 | 156 | 312 | 1 | 158 | 3.27e-30 | 118 |
| Msa0091540 | MtrunA17_Chr1g0212151 | 38.710 | 155 | 80 | 3 | 1 | 140 | 1 | 155 | 6.55e-29 | 114 |
| Msa0091540 | MtrunA17_Chr6g0449851 | 35.465 | 172 | 108 | 2 | 156 | 325 | 1 | 171 | 2.47e-29 | 115 |
| Msa0091540 | MtrunA17_Chr6g0449851 | 36.774 | 155 | 83 | 2 | 1 | 140 | 1 | 155 | 1.89e-27 | 110 |
| Msa0091540 | MtrunA17_Chr6g0449861 | 31.111 | 180 | 121 | 2 | 156 | 333 | 9 | 187 | 1.44e-26 | 108 |
| Msa0091540 | MtrunA17_Chr6g0449861 | 35.484 | 155 | 85 | 2 | 1 | 140 | 9 | 163 | 2.61e-25 | 105 |
| Msa0091540 | MtrunA17_Chr3g0107381 | 25.373 | 201 | 120 | 7 | 156 | 344 | 1 | 183 | 9.21e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0091540 | AT5G55690.1 | 33.557 | 149 | 75 | 5 | 156 | 296 | 1 | 133 | 4.70e-13 | 69.3 |
| Msa0091540 | AT5G55690.1 | 35.374 | 147 | 80 | 5 | 1 | 135 | 1 | 144 | 2.71e-11 | 63.9 |
| Msa0091540 | AT5G55690.2 | 33.557 | 149 | 75 | 5 | 156 | 296 | 1 | 133 | 4.70e-13 | 69.3 |
| Msa0091540 | AT5G55690.2 | 35.374 | 147 | 80 | 5 | 1 | 135 | 1 | 144 | 2.71e-11 | 63.9 |
Find 59 sgRNAs with CRISPR-Local
Find 239 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTCCATGTTAACCAAATT+TGG | 0.129467 | 1_2:-73672616 | None:intergenic |
| TCCAACCTGGCATCCAAATT+TGG | 0.186789 | 1_2:+73672603 | Msa0091540:CDS |
| TTTACAATTGTATGGTCTTC+TGG | 0.253429 | 1_2:-73676677 | None:intergenic |
| CGGTCTTCGGGCCATGTTAT+TGG | 0.257464 | 1_2:-73672427 | None:intergenic |
| TGGTCTTCTGGCCATGTTAT+TGG | 0.266179 | 1_2:-73676665 | None:intergenic |
| TCCAGTCTTGTTAGTGTATT+GGG | 0.267250 | 1_2:-73676582 | None:intergenic |
| TCTTCCATCTTAATTAAATC+TGG | 0.297958 | 1_2:-73676848 | None:intergenic |
| CTCCAGTCTTGTTAGTGTAT+TGG | 0.305175 | 1_2:-73676583 | None:intergenic |
| TTTACCATTGTACGGTCTTC+GGG | 0.322440 | 1_2:-73672439 | None:intergenic |
| GTTTACCATTGTACGGTCTT+CGG | 0.346180 | 1_2:-73672440 | None:intergenic |
| GTCGTTGACATCAAATATCT+TGG | 0.367645 | 1_2:-73672506 | None:intergenic |
| GTCGTTGACATCAAATATCT+TGG | 0.367645 | 1_2:-73676738 | None:intergenic |
| ACCGGACTTGACAGTGTATT+GGG | 0.378449 | 1_2:-73672356 | None:intergenic |
| CACCGGACTTGACAGTGTAT+TGG | 0.384830 | 1_2:-73672357 | None:intergenic |
| GTGATTACAAGCTTGAATCT+TGG | 0.389216 | 1_2:-73672674 | None:intergenic |
| TCCATGTGTTGTTGCATTTG+AGG | 0.399480 | 1_2:-73677010 | None:intergenic |
| GCATCCAGATTTAATTAAGA+TGG | 0.417713 | 1_2:+73676844 | Msa0091540:CDS |
| GCATAGAGTTTACAATTGTA+TGG | 0.435000 | 1_2:-73676685 | None:intergenic |
| TGATGTGTTGTTGCATTTGA+GGG | 0.441139 | 1_2:-73672777 | None:intergenic |
| TGGAATTTGTAGAATGGGTC+GGG | 0.450805 | 1_2:+73676472 | Msa0091540:intron |
| GATGATATCTTTATGCACTT+TGG | 0.458740 | 1_2:-73672569 | None:intergenic |
| GTTAACCAAATTTGGATGCC+AGG | 0.463541 | 1_2:-73672608 | None:intergenic |
| ATTAAATCTGGATGCCAAGT+TGG | 0.464493 | 1_2:-73676836 | None:intergenic |
| CTTGGGTGTTTCAATCACTT+TGG | 0.465321 | 1_2:-73676720 | None:intergenic |
| GATGATAGCTTTATGCACTT+TGG | 0.469421 | 1_2:-73676801 | None:intergenic |
| ACCAAATTTGGATGCCAGGT+TGG | 0.474376 | 1_2:-73672604 | None:intergenic |
| ATCATGTGTTTAAATCAAGT+TGG | 0.487349 | 1_2:-73677096 | None:intergenic |
| TTGATGTGTTGTTGCATTTG+AGG | 0.494636 | 1_2:-73672778 | None:intergenic |
| TCCCAATACACTGTCAAGTC+CGG | 0.494797 | 1_2:+73672355 | Msa0091540:CDS |
| ACTTTCAAGCAAAGAAAAGC+TGG | 0.495334 | 1_2:+73672316 | Msa0091540:CDS |
| TTGGAATTTGTAGAATGGGT+CGG | 0.500741 | 1_2:+73676471 | Msa0091540:intron |
| TGATGAATTATGAGGCAAAC+CGG | 0.501798 | 1_2:-73677068 | None:intergenic |
| TGGTTTGTTGATGAATTATG+AGG | 0.510382 | 1_2:-73677076 | None:intergenic |
| TGAACGACACTAAGTGGGCT+TGG | 0.514956 | 1_2:-73676980 | None:intergenic |
| GCATCCAAATTTGGTTAACA+TGG | 0.520385 | 1_2:+73672612 | Msa0091540:CDS |
| TCCCAATACACTAACAAGAC+TGG | 0.520688 | 1_2:+73676581 | Msa0091540:CDS |
| CTTTGAAATTAAGAAAGCTA+AGG | 0.524267 | 1_2:+73672531 | Msa0091540:CDS |
| TTTGTTTGTAGAATGGGTCG+TGG | 0.527118 | 1_2:+73672247 | None:intergenic |
| TTGATTGTGTATGATGATGA+TGG | 0.527956 | 1_2:+73672391 | Msa0091540:CDS |
| TCGTTGACATCAAATATCTT+GGG | 0.530959 | 1_2:-73672505 | None:intergenic |
| TCGTTGACATCAAATATCTT+GGG | 0.530959 | 1_2:-73676737 | None:intergenic |
| ACCTCAAATGCAACAACACA+TGG | 0.539597 | 1_2:+73677009 | Msa0091540:CDS |
| ATGCTATGAACGACACTAAG+TGG | 0.542543 | 1_2:-73676986 | None:intergenic |
| GCATGGAGTTTACCATTGTA+CGG | 0.551323 | 1_2:-73672447 | None:intergenic |
| TCGATATCATGTATCCAACT+TGG | 0.557370 | 1_2:+73676822 | Msa0091540:CDS |
| GATTGCTGTTATAAATGCAA+AGG | 0.578620 | 1_2:+73676889 | Msa0091540:CDS |
| GATGATGGTGGTAATAATGC+GGG | 0.602556 | 1_2:+73676641 | Msa0091540:CDS |
| GGATGATATTAGTGAGACGA+TGG | 0.621537 | 1_2:+73677030 | Msa0091540:CDS |
| TAACATGTTGAAAAGTGAGA+TGG | 0.625075 | 1_2:+73676934 | Msa0091540:CDS |
| TGCTATGAACGACACTAAGT+GGG | 0.625498 | 1_2:-73676985 | None:intergenic |
| TGATGATGATGGCAATAATG+TGG | 0.626471 | 1_2:+73672402 | Msa0091540:CDS |
| CAGCACTTAAGTCTCTGAGC+TGG | 0.631241 | 1_2:-73672642 | None:intergenic |
| TCAATATCAAATATCCAACC+TGG | 0.635175 | 1_2:+73672590 | Msa0091540:CDS |
| ATGGATATGACTAATCATGC+CGG | 0.642387 | 1_2:+73677049 | Msa0091540:CDS |
| ATAATGTGGGACCAATAACA+TGG | 0.642393 | 1_2:+73672416 | Msa0091540:CDS |
| ATAATGCGGGACCAATAACA+TGG | 0.644832 | 1_2:+73676654 | Msa0091540:CDS |
| GATGATGATGGCAATAATGT+GGG | 0.653668 | 1_2:+73672403 | Msa0091540:CDS |
| TGATGATGGTGGTAATAATG+CGG | 0.705229 | 1_2:+73676640 | Msa0091540:CDS |
| ATGGCCCGAAGACCGTACAA+TGG | 0.720674 | 1_2:+73672435 | Msa0091540:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAATATTTGTAATTTGTA+AGG | + | chr1_2:73673343-73673362 | Msa0091540:intron | 10.0% |
| !!! | ATAAGTGAATATTATTTTTT+AGG | + | chr1_2:73674821-73674840 | Msa0091540:intron | 10.0% |
| !!! | AGAAAATTTAATTTTTTTCA+AGG | + | chr1_2:73675039-73675058 | Msa0091540:intron | 10.0% |
| !!! | GAAAATTTAATTTTTTTCAA+GGG | + | chr1_2:73675040-73675059 | Msa0091540:intron | 10.0% |
| !! | AAAATATATTAGCAAAATTT+GGG | + | chr1_2:73675216-73675235 | Msa0091540:intron | 10.0% |
| !!! | ATTTCAAAAATGATATATTT+TGG | + | chr1_2:73675576-73675595 | Msa0091540:intron | 10.0% |
| !! | TTTAAATAAAGTCAAATATA+TGG | + | chr1_2:73675655-73675674 | Msa0091540:intron | 10.0% |
| !!! | CTAATTTTTTTATTTTTGTT+TGG | + | chr1_2:73676452-73676471 | Msa0091540:intron | 10.0% |
| !! | TATAAACAAACCATATTATT+GGG | - | chr1_2:73673167-73673186 | None:intergenic | 15.0% |
| !! | TTCAATCCTATAAAATTTAT+AGG | + | chr1_2:73673742-73673761 | Msa0091540:intron | 15.0% |
| !! | TCAATCCTATAAAATTTATA+GGG | + | chr1_2:73673743-73673762 | Msa0091540:intron | 15.0% |
| !! | ATATATGTTACAACAAAATA+TGG | + | chr1_2:73673929-73673948 | Msa0091540:intron | 15.0% |
| !! | AAACTACATTAATATTTACT+AGG | + | chr1_2:73674057-73674076 | Msa0091540:intron | 15.0% |
| !!! | TCATTACACTTTTTTTTTTT+AGG | + | chr1_2:73674228-73674247 | Msa0091540:intron | 15.0% |
| !!! | CATTACACTTTTTTTTTTTA+GGG | + | chr1_2:73674229-73674248 | Msa0091540:intron | 15.0% |
| !! | ATAATATTCACTTATAATGT+TGG | - | chr1_2:73674816-73674835 | None:intergenic | 15.0% |
| !!! | ATCTAATATATTTTAGTGTT+TGG | - | chr1_2:73675166-73675185 | None:intergenic | 15.0% |
| !!! | CAAATTTTGCTAATATATTT+TGG | - | chr1_2:73675217-73675236 | None:intergenic | 15.0% |
| !! | CAAAATATATTAGCAAAATT+TGG | + | chr1_2:73675215-73675234 | Msa0091540:intron | 15.0% |
| !! | AAATATATTAGCAAAATTTG+GGG | + | chr1_2:73675217-73675236 | Msa0091540:intron | 15.0% |
| !!! | TTGTTTCAAAAGATATATTT+TGG | + | chr1_2:73675631-73675650 | Msa0091540:intron | 15.0% |
| !! | GTCTATAAATAAAAATCAAA+CGG | + | chr1_2:73675742-73675761 | Msa0091540:intron | 15.0% |
| !! | TGATTTAAAAATATGTGTTT+GGG | - | chr1_2:73676099-73676118 | None:intergenic | 15.0% |
| !! | TTGATTTAAAAATATGTGTT+TGG | - | chr1_2:73676100-73676119 | None:intergenic | 15.0% |
| !!! | CTTTGAAAATAAGAAAAAAA+TGG | + | chr1_2:73676763-73676782 | Msa0091540:CDS | 15.0% |
| !! | ATCATATGTTTAAATCAAGT+TGG | - | chr1_2:73672867-73672886 | None:intergenic | 20.0% |
| !! | AACTTAAACTTAAAATCTAG+TGG | - | chr1_2:73672961-73672980 | None:intergenic | 20.0% |
| !!! | GTTTTGTTTAGCATTTAATA+TGG | + | chr1_2:73672978-73672997 | Msa0091540:intron | 20.0% |
| !! | GTATAAACAAACCATATTAT+TGG | - | chr1_2:73673168-73673187 | None:intergenic | 20.0% |
| !! | CTAATAAACAAAAATTAGTG+AGG | - | chr1_2:73673622-73673641 | None:intergenic | 20.0% |
| !!! | TTTTTGAAGGAAATTTTTCT+AGG | - | chr1_2:73673717-73673736 | None:intergenic | 20.0% |
| !!! | GGATTGAATTTTTTTTTTGA+AGG | - | chr1_2:73673730-73673749 | None:intergenic | 20.0% |
| !!! | GTTAACCCTATAAATTTTAT+AGG | - | chr1_2:73673751-73673770 | None:intergenic | 20.0% |
| !!! | AAAAGTGTAATGATAATAGA+AGG | - | chr1_2:73674221-73674240 | None:intergenic | 20.0% |
| !! | TTATCATTACACTTGTTTAA+AGG | + | chr1_2:73674255-73674274 | Msa0091540:intron | 20.0% |
| !! | TATGTATAATATATTCAACG+TGG | + | chr1_2:73674396-73674415 | Msa0091540:intron | 20.0% |
| !! | TTCAATAATTCTATGTCATT+TGG | + | chr1_2:73674543-73674562 | Msa0091540:intron | 20.0% |
| !! | AGAATATAGAAGTAAATCAA+TGG | - | chr1_2:73674615-73674634 | None:intergenic | 20.0% |
| !! | ATGCTTATTATACTTGTTTA+AGG | + | chr1_2:73674894-73674913 | Msa0091540:intron | 20.0% |
| !! | TCACAAAATATAGCAAAAAT+AGG | - | chr1_2:73675119-73675138 | None:intergenic | 20.0% |
| !!! | TAATATATTTTAGTGTTTGG+AGG | - | chr1_2:73675163-73675182 | None:intergenic | 20.0% |
| !!! | GAACACAATCTTAAATATTT+TGG | - | chr1_2:73675195-73675214 | None:intergenic | 20.0% |
| !! | TTAGTAGTGTTTATATAGTA+GGG | - | chr1_2:73675382-73675401 | None:intergenic | 20.0% |
| !! | ATTAGTAGTGTTTATATAGT+AGG | - | chr1_2:73675383-73675402 | None:intergenic | 20.0% |
| !!! | ATTCATATTGATTCAATGAA+TGG | + | chr1_2:73675961-73675980 | Msa0091540:intron | 20.0% |
| !!! | TTCATATTGATTCAATGAAT+GGG | + | chr1_2:73675962-73675981 | Msa0091540:intron | 20.0% |
| !!! | ATTCATATTGATTCAATGAA+TGG | + | chr1_2:73675961-73675980 | Msa0091540:intron | 20.0% |
| !!! | TTCATATTGATTCAATGAAT+GGG | + | chr1_2:73675962-73675981 | Msa0091540:intron | 20.0% |
| !! | TATGAAACAAAATCATAGAT+AGG | - | chr1_2:73676154-73676173 | None:intergenic | 20.0% |
| !!! | TTATTTGTTCATCATTTTCT+TGG | + | chr1_2:73676309-73676328 | Msa0091540:intron | 20.0% |
| !!! | CTTTGAAATTAAGAAAGCTA+AGG | + | chr1_2:73672531-73672550 | Msa0091540:CDS | 25.0% |
| !!! | TTTTTGTTTTGCTCTAGTAT+GGG | + | chr1_2:73673024-73673043 | Msa0091540:intron | 25.0% |
| ! | GTGGAAATTTAAAAAACCAA+GGG | - | chr1_2:73673145-73673164 | None:intergenic | 25.0% |
| ! | TAAATTTCCACCCAATAATA+TGG | + | chr1_2:73673154-73673173 | Msa0091540:intron | 25.0% |
| ! | TACTAGGAAAAGCAAAATTA+GGG | + | chr1_2:73673492-73673511 | Msa0091540:intron | 25.0% |
| ! | AAAATTCCTCACAAATTACT+TGG | + | chr1_2:73673538-73673557 | Msa0091540:intron | 25.0% |
| ! | ATTTAGTGACAAAATTAGAG+AGG | + | chr1_2:73673568-73673587 | Msa0091540:intron | 25.0% |
| ! | TTTAGTGACAAAATTAGAGA+GGG | + | chr1_2:73673569-73673588 | Msa0091540:intron | 25.0% |
| ! | GTGGCTTAGTTAATTAATTA+AGG | - | chr1_2:73673664-73673683 | None:intergenic | 25.0% |
| ! | TGTTTACTTTGATGAACATT+TGG | + | chr1_2:73674168-73674187 | Msa0091540:intron | 25.0% |
| ! | TTTGGCAAATTAAAGAAACA+CGG | - | chr1_2:73674467-73674486 | None:intergenic | 25.0% |
| !!! | TTCTTTAATTTGCCAAATAC+AGG | + | chr1_2:73674470-73674489 | Msa0091540:intron | 25.0% |
| !! | AGTATAGCACTTTTCTTTTA+CGG | + | chr1_2:73674567-73674586 | Msa0091540:intron | 25.0% |
| !! | GCAATGACAATAATTTTCAT+CGG | + | chr1_2:73674764-73674783 | Msa0091540:intron | 25.0% |
| ! | TCGGATCTAATATAATTACA+AGG | + | chr1_2:73674783-73674802 | Msa0091540:intron | 25.0% |
| ! | ATATAGCCTAAAGACATAAA+GGG | - | chr1_2:73675081-73675100 | None:intergenic | 25.0% |
| ! | AATATAGCCTAAAGACATAA+AGG | - | chr1_2:73675082-73675101 | None:intergenic | 25.0% |
| !!! | GTCTTTAGGCTATATTTTAA+TGG | + | chr1_2:73675086-73675105 | Msa0091540:intron | 25.0% |
| ! | ATGATTATGACCTCTATTAA+AGG | + | chr1_2:73675351-73675370 | Msa0091540:intron | 25.0% |
| ! | TAGTAGTGTTTATATAGTAG+GGG | - | chr1_2:73675381-73675400 | None:intergenic | 25.0% |
| ! | AAAAAGTGAAAGTCTCATAT+CGG | - | chr1_2:73675419-73675438 | None:intergenic | 25.0% |
| !!! | CTTTTTGAAACAATTTCTGT+TGG | - | chr1_2:73675511-73675530 | None:intergenic | 25.0% |
| !! | CAATTGGAGTTTCTAAAAAA+TGG | - | chr1_2:73675782-73675801 | None:intergenic | 25.0% |
| ! | AACAAGATTTCTACACTAAA+AGG | + | chr1_2:73675910-73675929 | Msa0091540:intron | 25.0% |
| !!! | ATGATTTTGTTTCATATCGT+AGG | + | chr1_2:73676158-73676177 | Msa0091540:intron | 25.0% |
| ! | AGTGATGTATTTATAGACAA+GGG | - | chr1_2:73676190-73676209 | None:intergenic | 25.0% |
| ! | TAGTGATGTATTTATAGACA+AGG | - | chr1_2:73676191-73676210 | None:intergenic | 25.0% |
| ! | TAGTGATGTATTTATAGACA+AGG | - | chr1_2:73676191-73676210 | None:intergenic | 25.0% |
| !! | TTCATATATCCTTTTATACG+TGG | + | chr1_2:73676391-73676410 | Msa0091540:intron | 25.0% |
| ! | TAATTCAATCCACGTATAAA+AGG | - | chr1_2:73676403-73676422 | None:intergenic | 25.0% |
| !! | TTTGTTTGGAATTTGTAGAA+TGG | + | chr1_2:73676466-73676485 | Msa0091540:intron | 25.0% |
| !! | TTGTTTGGAATTTGTAGAAT+GGG | + | chr1_2:73676467-73676486 | Msa0091540:intron | 25.0% |
| ! | TCTTCCATCTTAATTAAATC+TGG | - | chr1_2:73676851-73676870 | None:intergenic | 25.0% |
| ! | TTGATTGTGTATGATGATGA+TGG | + | chr1_2:73672391-73672410 | Msa0091540:CDS | 30.0% |
| TCGTTGACATCAAATATCTT+GGG | - | chr1_2:73672508-73672527 | None:intergenic | 30.0% | |
| GATGATATCTTTATGCACTT+TGG | - | chr1_2:73672572-73672591 | None:intergenic | 30.0% | |
| TCAATATCAAATATCCAACC+TGG | + | chr1_2:73672590-73672609 | Msa0091540:CDS | 30.0% | |
| !! | TGGTTTGTTGATGAATTATG+AGG | - | chr1_2:73672847-73672866 | None:intergenic | 30.0% |
| TTAAACATATGATTACCCGT+AGG | + | chr1_2:73672874-73672893 | Msa0091540:intron | 30.0% | |
| ! | AACTATATATGAAGCACCTA+CGG | - | chr1_2:73672893-73672912 | None:intergenic | 30.0% |
| !!! | CTTTTTGTTTTGCTCTAGTA+TGG | + | chr1_2:73673023-73673042 | Msa0091540:intron | 30.0% |
| GGTGGAAATTTAAAAAACCA+AGG | - | chr1_2:73673146-73673165 | None:intergenic | 30.0% | |
| AAACAAACCATATTATTGGG+TGG | - | chr1_2:73673164-73673183 | None:intergenic | 30.0% | |
| TAACTAAATGTAAGAACCCA+GGG | + | chr1_2:73673445-73673464 | Msa0091540:intron | 30.0% | |
| !! | AATTTTGCTTTTCCTAGTAG+TGG | - | chr1_2:73673491-73673510 | None:intergenic | 30.0% |
| CTACTAGGAAAAGCAAAATT+AGG | + | chr1_2:73673491-73673510 | Msa0091540:intron | 30.0% | |
| GAATTTAACAAGCAGCTAAA+TGG | - | chr1_2:73673691-73673710 | None:intergenic | 30.0% | |
| !!! | GGTTTTGCTATTGAATTTGA+AGG | - | chr1_2:73674200-73674219 | None:intergenic | 30.0% |
| TTGGCAAATTAAAGAAACAC+GGG | - | chr1_2:73674466-73674485 | None:intergenic | 30.0% | |
| ACATGCAATGTAAGAAATGT+TGG | - | chr1_2:73674496-73674515 | None:intergenic | 30.0% | |
| ! | CACTTTTCTTTTACGGAATT+TGG | + | chr1_2:73674574-73674593 | Msa0091540:intron | 30.0% |
| TATATTCTCCAACTCAAGAT+CGG | + | chr1_2:73674725-73674744 | Msa0091540:intron | 30.0% | |
| GTCATTGAAAAAAGATCCAA+TGG | + | chr1_2:73674987-73675006 | Msa0091540:intron | 30.0% | |
| TCAGTTAAAACAGAATTTCG+AGG | + | chr1_2:73675013-73675032 | Msa0091540:intron | 30.0% | |
| AATTTCTGTTGGAACATATG+TGG | - | chr1_2:73675500-73675519 | None:intergenic | 30.0% | |
| ! | GACTATGACTTCTTTTCAAT+TGG | - | chr1_2:73675798-73675817 | None:intergenic | 30.0% |
| ATTTGTCATAAATAAGCGAG+AGG | - | chr1_2:73675943-73675962 | None:intergenic | 30.0% | |
| ! | AAATATGTGTTTGGGATGAA+AGG | - | chr1_2:73676091-73676110 | None:intergenic | 30.0% |
| GTATTTATAGACAAGGGTTA+TGG | - | chr1_2:73676184-73676203 | None:intergenic | 30.0% | |
| ! | AGCAATGTGTTTTACCTTAA+CGG | - | chr1_2:73676255-73676274 | None:intergenic | 30.0% |
| GCAAAAATACTTTCAAGCAA+AGG | + | chr1_2:73676534-73676553 | Msa0091540:CDS | 30.0% | |
| ACTTTCAAGCAAAGGAAAAA+TGG | + | chr1_2:73676542-73676561 | Msa0091540:CDS | 30.0% | |
| ! | TATGATGATGATGATGATGA+TGG | + | chr1_2:73676626-73676645 | Msa0091540:CDS | 30.0% |
| TTTACAATTGTATGGTCTTC+TGG | - | chr1_2:73676680-73676699 | None:intergenic | 30.0% | |
| GCATAGAGTTTACAATTGTA+TGG | - | chr1_2:73676688-73676707 | None:intergenic | 30.0% | |
| TCGTTGACATCAAATATCTT+GGG | - | chr1_2:73672508-73672527 | None:intergenic | 30.0% | |
| GCATCCAGATTTAATTAAGA+TGG | + | chr1_2:73676844-73676863 | Msa0091540:CDS | 30.0% | |
| ! | GATTGCTGTTATAAATGCAA+AGG | + | chr1_2:73676889-73676908 | Msa0091540:CDS | 30.0% |
| TAACATGTTGAAAAGTGAGA+TGG | + | chr1_2:73676934-73676953 | Msa0091540:CDS | 30.0% | |
| !! | TGGTTTGTTGATGAATTATG+AGG | - | chr1_2:73672847-73672866 | None:intergenic | 30.0% |
| ACTTTCAAGCAAAGAAAAGC+TGG | + | chr1_2:73672316-73672335 | Msa0091540:CDS | 35.0% | |
| ! | AATCAAACAAGCTTTTGCAC+CGG | - | chr1_2:73672377-73672396 | None:intergenic | 35.0% |
| !! | TGATGATGATGGCAATAATG+TGG | + | chr1_2:73672402-73672421 | Msa0091540:CDS | 35.0% |
| !! | GATGATGATGGCAATAATGT+GGG | + | chr1_2:73672403-73672422 | Msa0091540:CDS | 35.0% |
| ATAATGTGGGACCAATAACA+TGG | + | chr1_2:73672416-73672435 | Msa0091540:CDS | 35.0% | |
| GTCGTTGACATCAAATATCT+TGG | - | chr1_2:73672509-73672528 | None:intergenic | 35.0% | |
| GCATCCAAATTTGGTTAACA+TGG | + | chr1_2:73672612-73672631 | Msa0091540:CDS | 35.0% | |
| GCTTCCATGTTAACCAAATT+TGG | - | chr1_2:73672619-73672638 | None:intergenic | 35.0% | |
| GTGATTACAAGCTTGAATCT+TGG | - | chr1_2:73672677-73672696 | None:intergenic | 35.0% | |
| CAACATGTTGAAAAGTGAGA+TGG | + | chr1_2:73672702-73672721 | Msa0091540:intron | 35.0% | |
| ! | TGATGTGTTGTTGCATTTGA+GGG | - | chr1_2:73672780-73672799 | None:intergenic | 35.0% |
| ! | TTGATGTGTTGTTGCATTTG+AGG | - | chr1_2:73672781-73672800 | None:intergenic | 35.0% |
| CATCAATCATGTTAGTGAGA+TGG | + | chr1_2:73672795-73672814 | Msa0091540:intron | 35.0% | |
| ! | ACTATATATGAAGCACCTAC+GGG | - | chr1_2:73672892-73672911 | None:intergenic | 35.0% |
| TTTAAAAAACCAAGGGATGC+AGG | - | chr1_2:73673138-73673157 | None:intergenic | 35.0% | |
| AAGTTTGATGTGAGAGTCTT+AGG | - | chr1_2:73673224-73673243 | None:intergenic | 35.0% | |
| !!! | GTTGACACACTCTACTTTTT+AGG | + | chr1_2:73673245-73673264 | Msa0091540:intron | 35.0% |
| GTCAACATGTAAAAGCAACA+AGG | - | chr1_2:73673310-73673329 | None:intergenic | 35.0% | |
| GTAACTAAATGTAAGAACCC+AGG | + | chr1_2:73673444-73673463 | Msa0091540:intron | 35.0% | |
| TAGGAAAAGCAAAATTAGGG+AGG | + | chr1_2:73673495-73673514 | Msa0091540:intron | 35.0% | |
| TTAGGGAGGAAAATTAGTGA+CGG | + | chr1_2:73673509-73673528 | Msa0091540:intron | 35.0% | |
| CTAATCCTACTAACACTACT+TGG | + | chr1_2:73674354-73674373 | Msa0091540:intron | 35.0% | |
| TGGCAAATTAAAGAAACACG+GGG | - | chr1_2:73674465-73674484 | None:intergenic | 35.0% | |
| ! | AAGAAATGTTGGCCTGTATT+TGG | - | chr1_2:73674485-73674504 | None:intergenic | 35.0% |
| TGGAGAATATATGCACAACT+TGG | - | chr1_2:73674716-73674735 | None:intergenic | 35.0% | |
| !!! | CTGTTTTAACTGACAACCAT+TGG | - | chr1_2:73675006-73675025 | None:intergenic | 35.0% |
| AGATCACCCTTTATGTCTTT+AGG | + | chr1_2:73675072-73675091 | Msa0091540:intron | 35.0% | |
| CTAGTACAAGTTATCAGAGA+AGG | + | chr1_2:73675824-73675843 | Msa0091540:intron | 35.0% | |
| TTTGTTCGTGTAGACTAAGT+AGG | + | chr1_2:73675847-73675866 | Msa0091540:intron | 35.0% | |
| ! | AATGTGTTTTACCTTAACGG+TGG | - | chr1_2:73676252-73676271 | None:intergenic | 35.0% |
| !!! | TTGTTTTTACCGTGTTCTAG+TGG | + | chr1_2:73676334-73676353 | Msa0091540:intron | 35.0% |
| AAGAAACAACCACTAGAACA+CGG | - | chr1_2:73676346-73676365 | None:intergenic | 35.0% | |
| TTGGAATTTGTAGAATGGGT+CGG | + | chr1_2:73676471-73676490 | Msa0091540:intron | 35.0% | |
| !! | TCCAGTCTTGTTAGTGTATT+GGG | - | chr1_2:73676585-73676604 | None:intergenic | 35.0% |
| !! | TGATGATGGTGGTAATAATG+CGG | + | chr1_2:73676640-73676659 | Msa0091540:CDS | 35.0% |
| GTCGTTGACATCAAATATCT+TGG | - | chr1_2:73672509-73672528 | None:intergenic | 35.0% | |
| !! | GATGATAGCTTTATGCACTT+TGG | - | chr1_2:73676804-73676823 | None:intergenic | 35.0% |
| TCGATATCATGTATCCAACT+TGG | + | chr1_2:73676822-73676841 | Msa0091540:CDS | 35.0% | |
| ATTAAATCTGGATGCCAAGT+TGG | - | chr1_2:73676839-73676858 | None:intergenic | 35.0% | |
| ATGGATATGACTAATCATGC+CGG | + | chr1_2:73677049-73677068 | Msa0091540:CDS | 35.0% | |
| TGATGAATTATGAGGCAAAC+CGG | - | chr1_2:73677071-73677090 | None:intergenic | 35.0% | |
| TTTACCATTGTACGGTCTTC+GGG | - | chr1_2:73672442-73672461 | None:intergenic | 40.0% | |
| GTTTACCATTGTACGGTCTT+CGG | - | chr1_2:73672443-73672462 | None:intergenic | 40.0% | |
| GCATGGAGTTTACCATTGTA+CGG | - | chr1_2:73672450-73672469 | None:intergenic | 40.0% | |
| ATGCTCATACTCTTGAAGCA+TGG | - | chr1_2:73672467-73672486 | None:intergenic | 40.0% | |
| GTTAACCAAATTTGGATGCC+AGG | - | chr1_2:73672611-73672630 | None:intergenic | 40.0% | |
| CATGTTGAAAAGTGAGATGG+TGG | + | chr1_2:73672705-73672724 | Msa0091540:intron | 40.0% | |
| TGCTATGTATGACACTGAGT+GGG | - | chr1_2:73672756-73672775 | None:intergenic | 40.0% | |
| ATGCTATGTATGACACTGAG+TGG | - | chr1_2:73672757-73672776 | None:intergenic | 40.0% | |
| CAATCATGTTAGTGAGATGG+TGG | + | chr1_2:73672798-73672817 | Msa0091540:intron | 40.0% | |
| ATGAGGCAAAACAGCATGAT+TGG | - | chr1_2:73672830-73672849 | None:intergenic | 40.0% | |
| ! | TTTTGTTCGACTATGTCCAG+TGG | + | chr1_2:73673084-73673103 | Msa0091540:intron | 40.0% |
| AGGTGCATGAGTACAATTTC+AGG | - | chr1_2:73673201-73673220 | None:intergenic | 40.0% | |
| TTTGATGTGAGAGTCTTAGG+AGG | - | chr1_2:73673221-73673240 | None:intergenic | 40.0% | |
| TAGTAGTGGTTATTCGAGTC+TGG | - | chr1_2:73673477-73673496 | None:intergenic | 40.0% | |
| AGACTCGAATAACCACTACT+AGG | + | chr1_2:73673476-73673495 | Msa0091540:intron | 40.0% | |
| ! | CAAGCAGCTAAATGGTAATG+TGG | - | chr1_2:73673683-73673702 | None:intergenic | 40.0% |
| ! | AATTTTGCATCCCCTAAACC+AGG | + | chr1_2:73674003-73674022 | Msa0091540:intron | 40.0% |
| ! | ATTTTGCATCCCCTAAACCA+GGG | + | chr1_2:73674004-73674023 | Msa0091540:intron | 40.0% |
| GTTTCTCTAGACATAGTCAG+TGG | - | chr1_2:73674041-73674060 | None:intergenic | 40.0% | |
| TGGATCCAAGTAGTGTTAGT+AGG | - | chr1_2:73674362-73674381 | None:intergenic | 40.0% | |
| TAACACTACTTGGATCCACA+GGG | + | chr1_2:73674364-73674383 | Msa0091540:intron | 40.0% | |
| TACATAGTAGAAACTCCCTG+TGG | - | chr1_2:73674382-73674401 | None:intergenic | 40.0% | |
| TATTGTCATTGCACTATCGC+CGG | - | chr1_2:73674756-73674775 | None:intergenic | 40.0% | |
| TTCGATTGCTGATGATCCAA+CGG | + | chr1_2:73674930-73674949 | Msa0091540:intron | 40.0% | |
| !!! | ATGTTTTAACCGTCAACCGT+TGG | - | chr1_2:73674949-73674968 | None:intergenic | 40.0% |
| TAGTCAAACTACCACCGTTA+AGG | + | chr1_2:73676238-73676257 | Msa0091540:intron | 40.0% | |
| TGGAATTTGTAGAATGGGTC+GGG | + | chr1_2:73676472-73676491 | Msa0091540:intron | 40.0% | |
| TCCCAATACACTAACAAGAC+TGG | + | chr1_2:73676581-73676600 | Msa0091540:CDS | 40.0% | |
| !! | CTCCAGTCTTGTTAGTGTAT+TGG | - | chr1_2:73676586-73676605 | None:intergenic | 40.0% |
| !! | GATGATGATGATGATGATGG+TGG | + | chr1_2:73676629-73676648 | Msa0091540:CDS | 40.0% |
| !! | GATGATGGTGGTAATAATGC+GGG | + | chr1_2:73676641-73676660 | Msa0091540:CDS | 40.0% |
| ATAATGCGGGACCAATAACA+TGG | + | chr1_2:73676654-73676673 | Msa0091540:CDS | 40.0% | |
| CTTGGGTGTTTCAATCACTT+TGG | - | chr1_2:73676723-73676742 | None:intergenic | 40.0% | |
| TGCTATGAACGACACTAAGT+GGG | - | chr1_2:73676988-73677007 | None:intergenic | 40.0% | |
| ATGCTATGAACGACACTAAG+TGG | - | chr1_2:73676989-73677008 | None:intergenic | 40.0% | |
| ACCTCAAATGCAACAACACA+TGG | + | chr1_2:73677009-73677028 | Msa0091540:CDS | 40.0% | |
| ! | TCCATGTGTTGTTGCATTTG+AGG | - | chr1_2:73677013-73677032 | None:intergenic | 40.0% |
| GGATGATATTAGTGAGACGA+TGG | + | chr1_2:73677030-73677049 | Msa0091540:CDS | 40.0% | |
| TCCCAATACACTGTCAAGTC+CGG | + | chr1_2:73672355-73672374 | Msa0091540:CDS | 45.0% | |
| ACCGGACTTGACAGTGTATT+GGG | - | chr1_2:73672359-73672378 | None:intergenic | 45.0% | |
| TCCAACCTGGCATCCAAATT+TGG | + | chr1_2:73672603-73672622 | Msa0091540:CDS | 45.0% | |
| ACCAAATTTGGATGCCAGGT+TGG | - | chr1_2:73672607-73672626 | None:intergenic | 45.0% | |
| TCGAGTCTGGTTAATTCCCT+GGG | - | chr1_2:73673464-73673483 | None:intergenic | 45.0% | |
| TTCGAGTCTGGTTAATTCCC+TGG | - | chr1_2:73673465-73673484 | None:intergenic | 45.0% | |
| ! | CTGCGACCAAGTAATTTGTG+AGG | - | chr1_2:73673547-73673566 | None:intergenic | 45.0% |
| CTAACACTACTTGGATCCAC+AGG | + | chr1_2:73674363-73674382 | Msa0091540:intron | 45.0% | |
| !! | ATCAGAGTGTGTCGACTATG+TGG | + | chr1_2:73674436-73674455 | Msa0091540:intron | 45.0% |
| TGCACAACTTGGCTATTCCA+GGG | - | chr1_2:73674705-73674724 | None:intergenic | 45.0% | |
| ATGCACAACTTGGCTATTCC+AGG | - | chr1_2:73674706-73674725 | None:intergenic | 45.0% | |
| CAACTCAAGATCGGAGTAAC+CGG | + | chr1_2:73674734-73674753 | Msa0091540:intron | 45.0% | |
| ! | TAGGGGCGTACCTTTAATAG+AGG | - | chr1_2:73675364-73675383 | None:intergenic | 45.0% |
| TGGTCTTCTGGCCATGTTAT+TGG | - | chr1_2:73676668-73676687 | None:intergenic | 45.0% | |
| !!! | TTGATATATATTTTATTATT+TGG | - | chr1_2:73675296-73675315 | None:intergenic | 5.0% |
| !! | TTTAAATAAAATCAAATATA+TGG | + | chr1_2:73675543-73675562 | Msa0091540:intron | 5.0% |
| !!! | TTTATTTAAAATTATCTAAA+AGG | + | chr1_2:73675706-73675725 | Msa0091540:intron | 5.0% |
| CACCGGACTTGACAGTGTAT+TGG | - | chr1_2:73672360-73672379 | None:intergenic | 50.0% | |
| CAGCACTTAAGTCTCTGAGC+TGG | - | chr1_2:73672645-73672664 | None:intergenic | 50.0% | |
| ! | TGTATGACACTGAGTGGGCT+TGG | - | chr1_2:73672751-73672770 | None:intergenic | 50.0% |
| TGTTCGACTATGTCCAGTGG+CGG | + | chr1_2:73673087-73673106 | Msa0091540:intron | 50.0% | |
| CGGTTACTCCGATCTTGAGT+TGG | - | chr1_2:73674736-73674755 | None:intergenic | 50.0% | |
| GCTGATGATCCAACGGTTGA+CGG | + | chr1_2:73674937-73674956 | Msa0091540:intron | 50.0% | |
| ! | TGAACGACACTAAGTGGGCT+TGG | - | chr1_2:73676983-73677002 | None:intergenic | 50.0% |
| CGGTCTTCGGGCCATGTTAT+TGG | - | chr1_2:73672430-73672449 | None:intergenic | 55.0% | |
| ATGGCCCGAAGACCGTACAA+TGG | + | chr1_2:73672435-73672454 | Msa0091540:CDS | 55.0% | |
| TGCATCCCCTCACACACAAG+TGG | - | chr1_2:73673115-73673134 | None:intergenic | 55.0% | |
| TAGCCAGGACCCTGGTTTAG+GGG | - | chr1_2:73674016-73674035 | None:intergenic | 55.0% | |
| GTAGCCAGGACCCTGGTTTA+GGG | - | chr1_2:73674017-73674036 | None:intergenic | 55.0% | |
| ACATAGTCAGTGGCGTAGCC+AGG | - | chr1_2:73674031-73674050 | None:intergenic | 55.0% | |
| TGTGTGCGCGCGCATCAAAT+TGG | + | chr1_2:73674678-73674697 | Msa0091540:intron | 55.0% | |
| GCGGAGCCACTTGTGTGTGA+GGG | + | chr1_2:73673106-73673125 | Msa0091540:intron | 60.0% | |
| CGGAGCCACTTGTGTGTGAG+GGG | + | chr1_2:73673107-73673126 | Msa0091540:intron | 60.0% | |
| CATCCCCTAAACCAGGGTCC+TGG | + | chr1_2:73674010-73674029 | Msa0091540:intron | 60.0% | |
| CGTAGCCAGGACCCTGGTTT+AGG | - | chr1_2:73674018-73674037 | None:intergenic | 60.0% | |
| GCGCGCATCAAATTGGTCCC+TGG | + | chr1_2:73674685-73674704 | Msa0091540:intron | 60.0% | |
| CACACAAGTGGCTCCGCCAC+TGG | - | chr1_2:73673103-73673122 | None:intergenic | 65.0% | |
| GGCGGAGCCACTTGTGTGTG+AGG | + | chr1_2:73673105-73673124 | Msa0091540:intron | 65.0% | |
| GGGGATGCACCTGCATCCCT+TGG | + | chr1_2:73673126-73673145 | Msa0091540:intron | 65.0% | |
| CAGTGGCGTAGCCAGGACCC+TGG | - | chr1_2:73674024-73674043 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 73672259 | 73677117 | 73672259 | ID=Msa0091540;Name=Msa0091540 |
| chr1_2 | mRNA | 73672259 | 73677117 | 73672259 | ID=Msa0091540-mRNA-1;Parent=Msa0091540;Name=Msa0091540-mRNA-1;_AED=0.07;_eAED=0.11;_QI=0|0|0|1|0|0|4|0|365 |
| chr1_2 | exon | 73672259 | 73672456 | 73672259 | ID=Msa0091540-mRNA-1:exon:25885;Parent=Msa0091540-mRNA-1 |
| chr1_2 | exon | 73672493 | 73672715 | 73672493 | ID=Msa0091540-mRNA-1:exon:25886;Parent=Msa0091540-mRNA-1 |
| chr1_2 | exon | 73672762 | 73672804 | 73672762 | ID=Msa0091540-mRNA-1:exon:25887;Parent=Msa0091540-mRNA-1 |
| chr1_2 | exon | 73676484 | 73677117 | 73676484 | ID=Msa0091540-mRNA-1:exon:25888;Parent=Msa0091540-mRNA-1 |
| chr1_2 | CDS | 73672259 | 73672456 | 73672259 | ID=Msa0091540-mRNA-1:cds;Parent=Msa0091540-mRNA-1 |
| chr1_2 | CDS | 73672493 | 73672715 | 73672493 | ID=Msa0091540-mRNA-1:cds;Parent=Msa0091540-mRNA-1 |
| chr1_2 | CDS | 73672762 | 73672804 | 73672762 | ID=Msa0091540-mRNA-1:cds;Parent=Msa0091540-mRNA-1 |
| chr1_2 | CDS | 73676484 | 73677117 | 73676484 | ID=Msa0091540-mRNA-1:cds;Parent=Msa0091540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
