AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0092070

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0092070 MtrunA17_Chr1g0183741 98.545 275 4 0 1 275 1 275 0.0 578
Msa0092070 MtrunA17_Chr7g0261411 75.768 293 51 7 1 275 1 291 6.83e-152 426
Msa0092070 MtrunA17_Chr2g0312321 47.280 239 107 5 6 229 7 241 2.16e-67 211
Msa0092070 MtrunA17_Chr2g0316971 56.250 160 64 1 8 161 21 180 4.03e-61 197
Msa0092070 MtrunA17_Chr3g0139331 43.333 240 110 5 9 234 10 237 1.80e-59 192
Msa0092070 MtrunA17_Chr4g0060931 48.691 191 82 4 10 186 17 205 5.67e-59 191
Msa0092070 MtrunA17_Chr1g0147421 53.797 158 70 2 2 156 19 176 1.49e-58 190
Msa0092070 MtrunA17_Chr4g0018391 40.891 247 123 7 8 234 5 248 1.32e-57 187
Msa0092070 MtrunA17_Chr3g0091921 49.733 187 78 5 10 182 16 200 1.12e-56 184
Msa0092070 MtrunA17_Chr5g0405211 48.205 195 89 5 8 192 6 198 1.97e-56 184
Msa0092070 MtrunA17_Chr6g0484441 56.376 149 61 2 10 156 5 151 2.54e-56 184
Msa0092070 MtrunA17_Chr6g0461661 53.503 157 67 2 10 160 18 174 3.35e-56 185
Msa0092070 MtrunA17_Chr7g0253011 54.375 160 65 3 5 156 12 171 1.16e-55 183
Msa0092070 MtrunA17_Chr6g0453451 41.202 233 121 5 4 225 10 237 2.76e-55 181
Msa0092070 MtrunA17_Chr8g0372121 46.774 186 89 5 8 185 4 187 3.50e-55 180
Msa0092070 MtrunA17_Chr2g0318101 40.408 245 124 5 10 233 15 258 1.35e-54 180
Msa0092070 MtrunA17_Chr5g0398971 53.595 153 64 3 10 156 7 158 1.35e-54 180
Msa0092070 MtrunA17_Chr4g0017921 54.902 153 63 3 8 156 6 156 5.56e-54 178
Msa0092070 MtrunA17_Chr4g0056541 52.229 157 68 3 8 159 5 159 1.26e-53 177
Msa0092070 MtrunA17_Chr7g0252971 42.857 203 89 3 10 185 8 210 8.51e-53 175
Msa0092070 MtrunA17_Chr6g0481091 41.860 215 115 4 8 216 4 214 1.51e-52 171
Msa0092070 MtrunA17_Chr3g0144271 54.483 145 62 2 10 153 23 164 3.03e-52 176
Msa0092070 MtrunA17_Chr7g0217721 39.370 254 107 6 13 221 22 273 3.11e-52 174
Msa0092070 MtrunA17_Chr2g0309891 54.194 155 62 3 9 156 5 157 5.09e-52 173
Msa0092070 MtrunA17_Chr1g0200561 52.229 157 68 4 5 156 14 168 6.77e-52 173
Msa0092070 MtrunA17_Chr4g0047841 45.810 179 70 2 10 161 15 193 1.99e-51 171
Msa0092070 MtrunA17_Chr7g0214071 48.235 170 81 3 10 177 15 179 1.02e-50 167
Msa0092070 MtrunA17_Chr3g0109821 43.868 212 85 5 8 212 4 188 2.48e-50 175
Msa0092070 MtrunA17_Chr2g0309331 43.842 203 100 6 9 206 9 202 4.90e-50 168
Msa0092070 MtrunA17_Chr3g0124761 51.899 158 64 3 10 159 7 160 8.58e-50 166
Msa0092070 MtrunA17_Chr8g0384721 50.625 160 67 3 10 160 7 163 1.01e-49 165
Msa0092070 MtrunA17_Chr5g0417791 47.097 155 72 2 10 156 3 155 1.65e-49 164
Msa0092070 MtrunA17_Chr4g0042561 46.061 165 76 4 6 159 5 167 2.92e-49 164
Msa0092070 MtrunA17_Chr2g0326361 49.045 157 72 2 9 157 13 169 8.87e-49 164
Msa0092070 MtrunA17_Chr5g0433781 54.140 157 60 4 8 156 4 156 9.82e-49 171
Msa0092070 MtrunA17_Chr3g0130731 50.625 160 66 4 10 160 7 162 1.60e-48 162
Msa0092070 MtrunA17_Chr7g0263931 47.742 155 73 1 10 156 11 165 2.58e-47 160
Msa0092070 MtrunA17_Chr8g0346001 44.848 165 73 3 8 156 13 175 8.58e-47 162
Msa0092070 MtrunA17_Chr7g0217711 53.968 126 56 1 13 138 22 145 9.21e-47 154
Msa0092070 MtrunA17_Chr5g0400461 49.398 166 76 4 7 164 3 168 1.10e-46 159
Msa0092070 MtrunA17_Chr2g0318081 49.398 166 70 4 1 156 3 164 1.44e-46 159
Msa0092070 MtrunA17_Chr8g0361731 37.118 229 126 3 12 222 16 244 1.43e-45 157
Msa0092070 MtrunA17_Chr8g0359921 48.701 154 71 2 9 156 13 164 5.74e-45 154
Msa0092070 MtrunA17_Chr5g0417001 36.697 218 118 4 12 211 16 231 6.89e-44 153
Msa0092070 MtrunA17_Chr4g0054791 40.351 228 107 7 7 223 3 212 3.28e-43 149
Msa0092070 MtrunA17_Chr1g0197351 47.531 162 67 4 9 156 41 198 1.44e-42 151
Msa0092070 MtrunA17_Chr6g0453131 43.125 160 77 3 10 156 15 173 2.92e-42 149
Msa0092070 MtrunA17_Chr3g0130101 45.695 151 74 3 12 156 9 157 1.08e-40 144
Msa0092070 MtrunA17_Chr3g0092671 49.007 151 69 4 12 156 7 155 1.17e-40 147
Msa0092070 MtrunA17_Chr1g0197361 44.751 181 91 6 12 185 10 188 2.43e-40 147
Msa0092070 MtrunA17_Chr4g0076731 41.176 204 101 5 12 212 56 243 5.59e-40 144
Msa0092070 MtrunA17_Chr5g0428991 49.020 153 70 3 10 156 25 175 1.23e-39 145
Msa0092070 MtrunA17_Chr3g0128151 35.849 265 151 9 9 267 21 272 1.28e-39 145
Msa0092070 MtrunA17_Chr3g0128111 46.667 150 72 3 13 156 45 192 2.40e-39 137
Msa0092070 MtrunA17_Chr5g0442771 41.463 164 72 3 12 156 20 178 5.60e-39 138
Msa0092070 MtrunA17_Chr2g0311651 37.727 220 114 7 12 208 24 243 6.04e-39 138
Msa0092070 MtrunA17_Chr8g0364791 34.568 243 137 6 10 234 6 244 8.78e-39 140
Msa0092070 MtrunA17_Chr2g0311661 35.841 226 116 6 12 210 23 246 4.67e-38 135
Msa0092070 MtrunA17_Chr4g0038751 42.953 149 79 3 12 157 17 162 9.37e-37 132
Msa0092070 MtrunA17_Chr1g0201021 45.033 151 75 3 12 156 21 169 2.35e-36 135
Msa0092070 MtrunA17_Chr8g0345671 46.939 147 73 4 10 153 11 155 3.47e-36 133
Msa0092070 MtrunA17_Chr8g0385991 40.000 160 85 3 3 153 7 164 7.26e-36 128
Msa0092070 MtrunA17_Chr8g0384201 41.176 153 82 3 10 156 6 156 1.24e-34 130
Msa0092070 MtrunA17_Chr8g0345691 43.537 147 78 4 10 153 12 156 1.66e-34 129
Msa0092070 MtrunA17_Chr3g0131911 41.463 164 82 3 8 159 12 173 2.92e-34 124
Msa0092070 MtrunA17_Chr3g0113001 46.667 135 61 4 58 183 13 145 4.90e-34 125
Msa0092070 MtrunA17_Chr2g0321631 42.405 158 75 6 11 154 5 160 1.47e-32 120
Msa0092070 MtrunA17_Chr4g0026141 38.365 159 81 5 10 154 5 160 1.41e-31 117
Msa0092070 MtrunA17_Chr4g0050701 36.364 165 85 3 10 163 11 166 5.42e-31 114
Msa0092070 MtrunA17_Chr7g0266701 36.585 164 88 6 10 158 4 166 1.80e-29 112
Msa0092070 MtrunA17_Chr8g0345711 42.636 129 70 3 10 135 12 139 8.32e-28 105
Msa0092070 MtrunA17_Chr8g0345721 36.095 169 70 4 4 135 24 191 1.83e-27 105
Msa0092070 MtrunA17_Chr3g0113031 38.068 176 77 6 73 221 3 173 2.05e-26 104
Msa0092070 MtrunA17_Chr8g0345701 38.514 148 71 5 5 135 2 146 2.81e-26 101
Msa0092070 MtrunA17_Chr7g0243371 53.750 80 37 0 65 144 19 98 6.03e-25 96.3
Msa0092070 MtrunA17_Chr8g0345731 40.458 131 73 3 10 135 24 154 1.12e-24 97.1
Msa0092070 MtrunA17_Chr2g0321741 41.600 125 67 4 30 153 12 131 1.40e-23 98.2
Msa0092070 MtrunA17_Chr8g0345741 36.496 137 78 4 21 154 2 132 6.43e-23 92.0
Msa0092070 MtrunA17_Chr8g0384351 37.748 151 76 5 8 158 8 140 9.96e-22 89.7
Msa0092070 MtrunA17_Chr3g0130321 28.814 177 99 5 8 169 5 169 4.68e-17 77.8
Msa0092070 MtrunA17_Chr7g0251651 33.333 135 84 4 7 139 15 145 4.89e-17 77.4
Msa0092070 MtrunA17_Chr7g0251671 34.211 152 84 5 1 145 1 143 7.89e-17 75.9
Msa0092070 MtrunA17_Chr7g0251661 29.932 147 97 4 1 145 1 143 2.96e-16 74.3
Msa0092070 MtrunA17_Chr3g0113011 50.000 48 24 0 9 56 18 65 1.37e-12 62.0
Msa0092070 MtrunA17_Chr2g0324961 28.313 166 96 6 9 156 48 208 3.65e-11 62.4
Msa0092070 MtrunA17_Chr3g0113041 51.163 43 21 0 14 56 23 65 7.42e-11 57.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0092070 AT4G28530.1 72.414 174 32 2 1 158 1 174 2.68e-89 269
Msa0092070 AT1G76420.1 57.500 160 65 1 9 165 21 180 1.41e-62 200
Msa0092070 AT1G56010.2 42.652 279 138 8 6 274 15 281 2.13e-61 197
Msa0092070 AT2G24430.2 56.291 151 63 1 9 156 15 165 3.15e-61 196
Msa0092070 AT2G24430.1 56.291 151 63 1 9 156 15 165 3.15e-61 196
Msa0092070 AT5G53950.1 50.276 181 84 1 10 184 17 197 1.05e-59 194
Msa0092070 AT2G18060.3 50.265 189 83 6 8 187 7 193 1.31e-59 194
Msa0092070 AT2G18060.1 50.265 189 83 6 8 187 7 193 1.31e-59 194
Msa0092070 AT3G12977.1 44.118 238 109 7 6 234 14 236 1.05e-58 189
Msa0092070 AT5G07680.2 57.516 153 57 3 10 156 3 153 1.19e-58 189
Msa0092070 AT5G07680.1 56.329 158 61 3 5 156 12 167 2.01e-58 189
Msa0092070 AT3G18400.1 43.644 236 101 6 10 215 5 238 2.09e-58 189
Msa0092070 AT4G36160.2 47.917 192 89 5 5 187 9 198 3.32e-58 190
Msa0092070 AT4G36160.1 47.917 192 89 5 5 187 5 194 4.22e-58 190
Msa0092070 AT4G36160.3 47.917 192 89 5 5 187 5 194 4.22e-58 190
Msa0092070 AT5G61430.1 56.863 153 58 3 10 156 16 166 5.38e-58 189
Msa0092070 AT5G39610.1 56.209 153 59 3 10 156 20 170 2.97e-56 182
Msa0092070 AT1G12260.2 53.947 152 63 3 10 156 7 156 5.93e-56 183
Msa0092070 AT1G12260.1 53.947 152 63 3 10 156 7 156 8.82e-56 184
Msa0092070 AT5G18270.1 53.892 167 66 4 10 170 21 182 1.20e-55 182
Msa0092070 AT5G18270.2 53.892 167 66 4 10 170 21 182 1.57e-55 182
Msa0092070 AT3G15170.1 52.667 150 65 1 10 153 20 169 2.89e-55 181
Msa0092070 AT1G62700.1 53.247 154 65 3 8 156 5 156 4.65e-55 182
Msa0092070 AT1G62700.2 53.247 154 65 3 8 156 5 156 4.65e-55 182
Msa0092070 AT4G28530.2 53.448 174 28 3 1 158 1 137 7.58e-55 180
Msa0092070 AT5G66300.1 53.086 162 68 4 4 159 6 165 1.26e-54 179
Msa0092070 AT3G04070.2 48.235 170 74 2 1 156 1 170 3.47e-54 179
Msa0092070 AT3G29035.1 55.263 152 60 2 10 155 24 173 5.27e-54 177
Msa0092070 AT3G04060.1 55.556 153 61 3 10 156 20 171 1.02e-53 177
Msa0092070 AT1G33280.1 39.161 286 142 10 8 271 6 281 2.83e-53 176
Msa0092070 AT4G10350.1 54.487 156 62 4 8 156 7 160 6.61e-53 176
Msa0092070 AT1G01720.1 40.870 230 118 5 10 224 7 233 2.72e-52 172
Msa0092070 AT1G71930.2 52.597 154 66 3 8 156 7 158 5.53e-52 172
Msa0092070 AT1G71930.1 52.597 154 66 3 8 156 7 158 5.53e-52 172
Msa0092070 AT5G62380.2 47.059 187 88 5 8 186 5 188 9.34e-52 173
Msa0092070 AT5G62380.1 47.059 187 88 5 8 186 5 188 9.34e-52 173
Msa0092070 AT3G04070.1 44.086 186 74 2 1 156 1 186 9.48e-52 173
Msa0092070 AT1G61110.1 48.603 179 72 4 1 160 4 181 3.55e-51 171
Msa0092070 AT3G17730.1 46.703 182 87 4 8 183 4 181 3.64e-51 168
Msa0092070 AT5G17260.1 48.256 172 80 3 8 172 4 173 4.54e-51 174
Msa0092070 AT3G03200.1 43.902 205 100 5 8 203 4 202 4.57e-51 174
Msa0092070 AT1G54330.1 56.291 151 61 3 9 156 5 153 8.58e-51 169
Msa0092070 AT1G65910.1 52.795 161 66 4 8 161 4 161 1.00e-48 171
Msa0092070 AT1G79580.3 51.316 152 69 3 9 156 16 166 1.07e-48 166
Msa0092070 AT1G79580.5 51.316 152 69 3 9 156 16 166 1.07e-48 166
Msa0092070 AT1G79580.4 51.316 152 69 3 9 156 16 166 1.07e-48 166
Msa0092070 AT1G79580.2 51.316 152 69 3 9 156 16 166 1.07e-48 166
Msa0092070 AT1G79580.1 51.316 152 69 3 9 156 16 166 1.07e-48 166
Msa0092070 AT3G61910.1 43.147 197 87 5 8 183 9 201 1.34e-48 164
Msa0092070 AT5G08790.1 49.057 159 69 2 10 159 7 162 7.25e-48 161
Msa0092070 AT3G15500.1 49.390 164 73 3 1 156 1 162 1.09e-47 161
Msa0092070 AT1G52890.1 51.316 152 68 2 9 156 13 162 1.37e-47 161
Msa0092070 AT4G27410.2 46.286 175 84 4 1 167 1 173 1.70e-47 160
Msa0092070 AT2G46770.1 43.787 169 73 3 8 156 14 180 2.65e-47 162
Msa0092070 AT5G63790.1 48.750 160 70 2 9 159 49 205 2.69e-47 160
Msa0092070 AT3G15510.1 38.426 216 103 4 14 209 21 226 2.85e-47 161
Msa0092070 AT1G77450.1 49.057 159 69 3 7 156 5 160 2.93e-47 158
Msa0092070 AT1G32770.1 37.900 219 110 5 8 202 14 230 3.17e-47 161
Msa0092070 AT5G63790.2 48.750 160 70 2 9 159 59 215 3.45e-47 160
Msa0092070 AT1G69490.1 45.860 157 75 2 8 156 7 161 6.16e-47 158
Msa0092070 AT5G46590.1 36.948 249 124 7 8 236 4 239 2.71e-46 157
Msa0092070 AT3G10480.1 50.318 157 69 3 7 156 24 178 2.85e-46 161
Msa0092070 AT1G33060.1 52.597 154 65 3 9 156 23 174 3.82e-46 164
Msa0092070 AT3G10490.1 48.148 162 75 3 2 156 19 178 3.90e-46 155
Msa0092070 AT1G33060.2 52.597 154 65 3 9 156 23 174 4.13e-46 164
Msa0092070 AT5G04410.1 49.045 157 72 3 9 159 8 162 4.58e-46 162
Msa0092070 AT4G17980.1 38.153 249 132 5 7 242 3 242 8.79e-46 155
Msa0092070 AT5G13180.1 47.742 155 75 2 10 161 14 165 1.92e-45 154
Msa0092070 AT4G35580.1 53.247 154 64 3 9 156 8 159 2.67e-45 159
Msa0092070 AT4G17980.2 38.306 248 131 5 8 242 4 242 3.38e-45 154
Msa0092070 AT4G35580.3 53.247 154 64 3 9 156 8 159 3.50e-45 159
Msa0092070 AT4G35580.2 53.247 154 64 3 9 156 8 159 3.52e-45 160
Msa0092070 AT3G10480.2 51.282 156 68 4 7 156 24 177 4.06e-45 158
Msa0092070 AT3G10490.2 48.148 162 75 3 2 156 19 178 6.90e-45 157
Msa0092070 AT1G32510.1 38.723 235 118 7 6 225 2 225 1.80e-44 152
Msa0092070 AT5G39820.1 37.566 189 92 2 12 174 22 210 3.14e-44 153
Msa0092070 AT3G10500.1 48.052 154 72 3 9 156 8 159 1.75e-43 155
Msa0092070 AT5G46590.2 51.515 132 61 2 8 137 4 134 3.37e-43 149
Msa0092070 AT4G27410.3 42.188 192 84 5 1 167 1 190 3.86e-43 149
Msa0092070 AT1G26870.1 33.603 247 129 4 10 234 16 249 5.26e-43 152
Msa0092070 AT2G33480.2 46.795 156 76 3 10 163 15 165 7.72e-43 147
Msa0092070 AT2G33480.1 46.203 158 76 3 10 163 15 167 1.22e-42 147
Msa0092070 AT1G56010.1 38.158 228 116 5 58 274 1 214 2.35e-42 146
Msa0092070 AT5G24590.2 43.407 182 96 3 8 183 11 191 2.73e-42 150
Msa0092070 AT2G43000.1 42.593 162 84 3 12 167 20 178 3.06e-42 146
Msa0092070 AT3G10480.3 41.579 190 69 3 7 156 24 211 2.46e-40 146
Msa0092070 AT3G49530.2 45.455 154 77 3 9 156 12 164 4.31e-40 144
Msa0092070 AT3G49530.1 45.455 154 77 3 9 156 12 164 8.09e-40 144
Msa0092070 AT3G12977.2 60.748 107 35 3 55 156 10 114 9.31e-40 138
Msa0092070 AT2G02450.1 44.304 158 81 3 12 165 53 207 9.63e-40 142
Msa0092070 AT2G02450.2 44.304 158 81 3 12 165 53 207 1.17e-39 142
Msa0092070 AT1G52880.1 45.342 161 72 3 14 159 21 180 2.18e-39 140
Msa0092070 AT2G27300.1 44.898 147 75 3 8 153 12 153 7.46e-38 136
Msa0092070 AT5G09330.5 43.791 153 78 3 10 156 6 156 7.77e-37 136
Msa0092070 AT5G09330.2 43.791 153 78 3 10 156 6 156 7.77e-37 136
Msa0092070 AT5G09330.4 43.791 153 78 3 10 156 6 156 7.77e-37 136
Msa0092070 AT5G09330.3 43.791 153 78 3 10 156 6 156 7.77e-37 136
Msa0092070 AT5G09330.1 43.791 153 78 3 10 156 6 156 7.77e-37 136
Msa0092070 AT2G17040.1 34.632 231 136 6 12 229 8 236 8.98e-37 132
Msa0092070 AT5G61430.2 59.048 105 35 3 58 156 1 103 1.58e-36 131
Msa0092070 AT1G34180.3 40.764 157 85 3 6 156 12 166 2.63e-36 134
Msa0092070 AT1G34190.1 41.722 151 80 3 12 156 18 166 8.70e-36 134
Msa0092070 AT1G34180.1 41.722 151 80 3 12 156 18 166 1.07e-35 134
Msa0092070 AT3G12910.1 36.087 230 123 7 12 220 23 249 4.13e-35 128
Msa0092070 AT4G10350.2 57.798 109 37 4 55 156 7 113 1.61e-34 126
Msa0092070 AT1G34180.4 37.870 169 85 3 6 156 12 178 3.04e-34 129
Msa0092070 AT1G34180.2 38.650 163 80 3 12 156 18 178 9.57e-34 129
Msa0092070 AT5G64060.1 39.610 154 85 3 9 156 5 156 2.07e-33 125
Msa0092070 AT1G32870.2 43.902 164 80 4 1 156 1 160 3.57e-33 127
Msa0092070 AT1G32870.1 43.902 164 80 4 1 156 1 160 3.84e-33 127
Msa0092070 AT1G32870.3 43.902 164 80 4 1 156 37 196 6.81e-33 126
Msa0092070 AT5G04395.1 42.384 151 73 2 1 137 19 169 1.87e-32 118
Msa0092070 AT5G22290.1 33.663 202 118 6 4 193 10 207 1.12e-31 120
Msa0092070 AT3G44290.2 39.860 143 80 3 12 153 16 153 1.06e-30 115
Msa0092070 AT3G44290.1 39.860 143 80 3 12 153 16 153 4.11e-30 115
Msa0092070 AT3G44350.2 35.814 215 116 8 6 206 1 207 6.45e-30 113
Msa0092070 AT4G01550.1 38.667 150 87 4 13 158 7 155 9.24e-29 114
Msa0092070 AT5G64530.1 32.941 170 84 3 9 160 2 159 1.37e-27 105
Msa0092070 AT3G44350.1 41.912 136 73 3 6 136 1 135 2.92e-27 103
Msa0092070 AT2G18060.2 49.057 106 46 5 88 187 2 105 5.66e-27 106
Msa0092070 AT5G22380.1 35.260 173 99 5 13 173 8 179 2.06e-26 103
Msa0092070 AT2G33480.3 48.077 104 48 2 64 163 9 110 2.52e-26 102
Msa0092070 AT4G01520.1 36.129 155 91 6 11 159 5 157 8.56e-26 103
Msa0092070 AT5G64530.2 37.500 128 68 2 10 137 3 118 2.92e-25 98.6
Msa0092070 AT1G02230.1 37.908 153 87 5 11 158 4 153 4.94e-25 102
Msa0092070 AT4G01540.3 35.948 153 90 6 13 159 7 157 1.12e-24 102
Msa0092070 AT4G01540.4 35.948 153 90 6 13 159 7 157 1.58e-24 101
Msa0092070 AT4G01540.1 35.948 153 90 6 13 159 7 157 1.63e-24 102
Msa0092070 AT4G01540.2 35.948 153 90 6 13 159 7 157 1.65e-24 102
Msa0092070 AT3G04420.2 33.775 151 93 4 11 157 4 151 2.24e-23 97.1
Msa0092070 AT3G04420.1 33.775 151 93 4 11 157 4 151 4.30e-23 97.1
Msa0092070 AT1G01010.1 30.568 229 130 9 13 219 6 227 7.61e-21 91.7
Msa0092070 AT3G10490.4 53.165 79 30 2 83 156 2 78 2.52e-19 86.7
Msa0092070 AT3G10490.3 53.165 79 30 2 83 156 2 78 2.52e-19 86.7
Msa0092070 AT2G43000.2 39.640 111 58 3 71 175 1 108 3.50e-19 83.6
Msa0092070 AT1G02250.1 32.680 153 95 4 11 158 4 153 2.18e-18 84.3
Msa0092070 AT1G02220.1 31.126 151 94 5 11 157 4 148 7.95e-18 82.8
Msa0092070 AT3G04430.1 36.957 138 73 5 16 141 6 141 3.14e-17 78.2
Msa0092070 AT5G50820.1 37.226 137 62 6 10 137 17 138 3.96e-16 75.1
Msa0092070 AT3G56530.1 27.815 151 102 4 9 154 51 199 6.29e-16 76.6
Msa0092070 AT5G14000.2 31.579 133 85 3 7 137 12 140 5.06e-14 68.6
Msa0092070 AT5G14000.1 31.579 133 85 3 7 137 12 140 2.77e-13 67.8
Msa0092070 AT3G55210.1 26.994 163 103 4 6 154 7 167 2.86e-13 68.9
Msa0092070 AT1G28470.1 28.814 177 105 6 9 168 76 248 2.27e-12 66.6
Msa0092070 AT5G22290.2 34.234 111 63 4 89 193 2 108 9.24e-12 63.9

Find 104 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTTCTTGTGGACTTAATT+TGG 0.161042 1_2:-74297826 None:intergenic
TTGGATAGGTAGTGGGTTTA+TGG 0.178084 1_2:-74294615 None:intergenic
GATTCATCAAAGAATTATTT+TGG 0.212245 1_2:-74297959 None:intergenic
TAGGGTTTCATTTGGTTATT+GGG 0.220851 1_2:+74298342 Msa0092070:three_prime_UTR
TATATAGTGTTTGGCTTCAT+AGG 0.225282 1_2:+74298250 Msa0092070:three_prime_UTR
TTAGGGTTTCATTTGGTTAT+TGG 0.232819 1_2:+74298341 Msa0092070:three_prime_UTR
TTGGCATGGTTTGGTTGGTT+AGG 0.262175 1_2:-74297869 None:intergenic
CCATATCCATCATCACATTT+AGG 0.299554 1_2:-74298038 None:intergenic
ACGTGCATGATTGGGATTAT+AGG 0.305437 1_2:+74298280 Msa0092070:three_prime_UTR
CCCAGATGTTGTAGCCCTAT+TGG 0.307461 1_2:-74296751 None:intergenic
ACCAATAGGGCTACAACATC+TGG 0.309712 1_2:+74296750 Msa0092070:CDS
CCTAAATGTGATGATGGATA+TGG 0.311726 1_2:+74298038 Msa0092070:CDS
AGTGTTCAGTGTGATTGGTT+AGG 0.323517 1_2:+74298323 Msa0092070:three_prime_UTR
TAAAACCTGTGGCATATTTA+CGG 0.326045 1_2:-74296725 None:intergenic
AAGATGAGAAAGAAGCAAAT+TGG 0.341217 1_2:-74297902 None:intergenic
TGCGAGCCTTGGCAACTTCC+TGG 0.343644 1_2:+74294836 Msa0092070:CDS
TTTCATTTGGTTATTGGGAG+GGG 0.344683 1_2:+74298347 Msa0092070:three_prime_UTR
GGGCATGCCACGTGCATGAT+TGG 0.350732 1_2:+74298271 Msa0092070:three_prime_UTR
TGGCATGGTTTGGTTGGTTA+GGG 0.355057 1_2:-74297868 None:intergenic
TTCATTTGGTTATTGGGAGG+GGG 0.361369 1_2:+74298348 Msa0092070:three_prime_UTR
GTGTTCAGTGTGATTGGTTA+GGG 0.362556 1_2:+74298324 Msa0092070:three_prime_UTR
GATCATGCATGAGTTTAGAT+TGG 0.381516 1_2:+74296896 Msa0092070:CDS
CACATTGATTAGCATTTGTA+GGG 0.386550 1_2:+74298376 Msa0092070:three_prime_UTR
ACCAACCAAACCATGCCAAT+TGG 0.386891 1_2:+74297873 Msa0092070:CDS
AGTGGGTTTATGGATATATA+TGG 0.387627 1_2:-74294605 None:intergenic
GTGTACATATATTATGTATA+TGG 0.388159 1_2:+74298180 Msa0092070:three_prime_UTR
TTTCAAGTGTTCAGTGTGAT+TGG 0.389446 1_2:+74298318 Msa0092070:three_prime_UTR
TGGTTTGGTTGGTTAGGGAT+GGG 0.392064 1_2:-74297863 None:intergenic
GGTTTGGTTGGTTAGGGATG+GGG 0.395087 1_2:-74297862 None:intergenic
GGAAAACTCTAGTGTTCTAT+AGG 0.402144 1_2:+74296841 Msa0092070:CDS
ATGGTTTGGTTGGTTAGGGA+TGG 0.404562 1_2:-74297864 None:intergenic
CGTACCTTAGGTGGCATATG+TGG 0.408299 1_2:-74296924 None:intergenic
TGATTGGTTAGGGTTTCATT+TGG 0.414632 1_2:+74298334 Msa0092070:three_prime_UTR
TCTGGGTATTGGAAAGCAAC+AGG 0.415312 1_2:+74296768 Msa0092070:CDS
CCAACCAAACCATGCCAATT+GGG 0.419454 1_2:+74297874 Msa0092070:CDS
ACACATTGATTAGCATTTGT+AGG 0.419765 1_2:+74298375 Msa0092070:three_prime_UTR
GCTCCAAATGGAATCAAAAC+AGG 0.425014 1_2:+74296870 Msa0092070:CDS
GGGCTACAACATCTGGGTAT+TGG 0.428057 1_2:+74296757 Msa0092070:CDS
TGTACCCAATTGGCATGGTT+TGG 0.430448 1_2:-74297878 None:intergenic
TGTAAGCTAGGGAGAGAAAG+AGG 0.432554 1_2:-74294657 None:intergenic
CCTACAACCTCATGTGTGAT+TGG 0.435012 1_2:-74296813 None:intergenic
TTGTGTAGAGTATTTCATAA+AGG 0.437100 1_2:+74297786 Msa0092070:CDS
GTTTCATTTGGTTATTGGGA+GGG 0.437465 1_2:+74298346 Msa0092070:three_prime_UTR
CCAATCACACATGAGGTTGT+AGG 0.440442 1_2:+74296813 Msa0092070:CDS
GCAAATTGGTTGTACCCAAT+TGG 0.440675 1_2:-74297888 None:intergenic
TTTGTTGATTACAGGAAGAC+TGG 0.444436 1_2:+74297760 Msa0092070:intron
CTAGCTTACAAAATTAATCA+TGG 0.444500 1_2:+74294670 Msa0092070:exon
GGTTTCATTTGGTTATTGGG+AGG 0.448742 1_2:+74298345 Msa0092070:three_prime_UTR
CTCATTTAAATGACAATGGT+GGG 0.454810 1_2:-74297934 None:intergenic
GGTTCTTATCTCTCAAGTTA+CGG 0.467662 1_2:+74298201 Msa0092070:three_prime_UTR
TCTCAAGTTACGGAAATTTG+TGG 0.472207 1_2:+74298211 Msa0092070:three_prime_UTR
GGCATGCCACGTGCATGATT+GGG 0.477476 1_2:+74298272 Msa0092070:three_prime_UTR
ATTAGTCCTAAATGTGATGA+TGG 0.485409 1_2:+74298032 Msa0092070:CDS
CCCAATTGGCATGGTTTGGT+TGG 0.487255 1_2:-74297874 None:intergenic
CTAGGATAAAATCGAAAGCC+AGG 0.494510 1_2:-74294722 None:intergenic
ATGTAATCATATATAGTGTT+TGG 0.501160 1_2:+74298241 Msa0092070:three_prime_UTR
CACAAATGAGGATGTTCTCA+AGG 0.510472 1_2:+74294784 Msa0092070:CDS
ATATAGTGTTTGGCTTCATA+GGG 0.512678 1_2:+74298251 Msa0092070:three_prime_UTR
CGTGACCGTAAATATGCCAC+AGG 0.515429 1_2:+74296720 Msa0092070:CDS
CAATCACACATGAGGTTGTA+GGG 0.516950 1_2:+74296814 Msa0092070:CDS
ACTTGCATACATGCGAGCCT+TGG 0.522819 1_2:+74294825 Msa0092070:CDS
TTATCCTAGTGATGAAGAGT+TGG 0.524957 1_2:+74294736 Msa0092070:CDS
TCTCATTTAAATGACAATGG+TGG 0.533934 1_2:-74297935 None:intergenic
CTAAACTCAACGCAACTGAA+TGG 0.538893 1_2:+74296682 Msa0092070:CDS
TATAGGAATAGAGCTCCAAA+TGG 0.544085 1_2:+74296858 Msa0092070:CDS
GGATGTTCTCAAGGGTACCT+TGG 0.551085 1_2:+74294793 Msa0092070:CDS
TGTTCTCAAGGGTACCTTGG+AGG 0.553598 1_2:+74294796 Msa0092070:CDS
TAGCTTACAAAATTAATCAT+GGG 0.557425 1_2:+74294671 Msa0092070:exon
CACATGAGGTTGTAGGGATG+AGG 0.557593 1_2:+74296820 Msa0092070:CDS
GGTTCTCATTTAAATGACAA+TGG 0.558939 1_2:-74297938 None:intergenic
GTACCTTAGGTGGCATATGT+GGG 0.562749 1_2:-74296923 None:intergenic
CTAAATGTGATGATGGATAT+GGG 0.563079 1_2:+74298039 Msa0092070:CDS
TTTATGGATATATATGGTAG+AGG 0.568550 1_2:-74294599 None:intergenic
CAAATGGAATCAAAACAGGT+TGG 0.568983 1_2:+74296874 Msa0092070:CDS
ATAGTCTCATACATTTCTTG+TGG 0.571583 1_2:-74297837 None:intergenic
ATCATGGGTCTTAGAGATGT+CGG 0.583109 1_2:+74294686 Msa0092070:exon
TTGGTTGTACCCAATTGGCA+TGG 0.593786 1_2:-74297883 None:intergenic
AGGACCAACTCTTCATCACT+AGG 0.594537 1_2:-74294740 None:intergenic
TTGTTGATTACAGGAAGACT+GGG 0.594796 1_2:+74297761 Msa0092070:intron
CATGGAAGGAATGAGATTCG+AGG 0.594984 1_2:+74298115 Msa0092070:CDS
GACCCCACATATGCCACCTA+AGG 0.595376 1_2:+74296920 Msa0092070:CDS
CCAATAGGGCTACAACATCT+GGG 0.599724 1_2:+74296751 Msa0092070:CDS
TATATACCAGGAAGTTGCCA+AGG 0.602199 1_2:-74294842 None:intergenic
TAGGATAAAATCGAAAGCCA+GGG 0.604860 1_2:-74294721 None:intergenic
CATTCCTTCCATGTCTGATG+AGG 0.604861 1_2:-74298105 None:intergenic
ATGCAAGTCAATTTCCTCCA+AGG 0.605909 1_2:-74294810 None:intergenic
CGAGGTTGATAATAATAGCA+TGG 0.613330 1_2:+74298133 Msa0092070:CDS
CATTGATTAGCATTTGTAGG+GGG 0.623982 1_2:+74298378 Msa0092070:three_prime_UTR
CTGGGTATTGGAAAGCAACA+GGG 0.625611 1_2:+74296769 Msa0092070:CDS
AGCAACAGGGAAGGATCGAA+CGG 0.629587 1_2:+74296782 Msa0092070:CDS
GGATATATATGGTAGAGGTG+TGG 0.633029 1_2:-74294594 None:intergenic
TGGTGTGGCCTCATCAGACA+TGG 0.638421 1_2:+74298097 Msa0092070:CDS
TACCTTAGGTGGCATATGTG+GGG 0.640655 1_2:-74296922 None:intergenic
GTTTGATCCAATCACACATG+AGG 0.642011 1_2:+74296806 Msa0092070:CDS
GTGGCCTCATCAGACATGGA+AGG 0.645880 1_2:+74298101 Msa0092070:CDS
ACAAATGAGGATGTTCTCAA+GGG 0.646017 1_2:+74294785 Msa0092070:CDS
CCTATTGGTTCTAAAACCTG+TGG 0.648859 1_2:-74296736 None:intergenic
ACATTGATTAGCATTTGTAG+GGG 0.662335 1_2:+74298377 Msa0092070:three_prime_UTR
GATTTGGAAGATCATCATGA+TGG 0.674805 1_2:+74298077 Msa0092070:CDS
GGAAGATCATCATGATGGTG+TGG 0.675111 1_2:+74298082 Msa0092070:CDS
AGGATAAAATCGAAAGCCAG+GGG 0.675897 1_2:-74294720 None:intergenic
GTATTGGAAAGCAACAGGGA+AGG 0.676342 1_2:+74296773 Msa0092070:CDS
TATAATCCCAATCATGCACG+TGG 0.713373 1_2:-74298278 None:intergenic
GGATAAAATCGAAAGCCAGG+GGG 0.720221 1_2:-74294719 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATAAAAAAATTATTTAT+TGG - chr1_2:74295301-74295320 None:intergenic 0.0%
!!! AATAATTTTTTTATATAATA+TGG + chr1_2:74295304-74295323 Msa0092070:intron 0.0%
!!! AAGATATATTTTTGAAATTT+TGG - chr1_2:74294637-74294656 None:intergenic 10.0%
!! AATAAAATAAAAGAGAAAAT+TGG + chr1_2:74295173-74295192 Msa0092070:intron 10.0%
!! TTAGGTATAAATAAAAAAAT+TGG + chr1_2:74297135-74297154 Msa0092070:intron 10.0%
!!! ATATTTTTGAAATTTTGGAT+AGG - chr1_2:74294632-74294651 None:intergenic 15.0%
!! TGATAAATATAATATATACC+AGG - chr1_2:74294857-74294876 None:intergenic 15.0%
!! TTAACCATATATTAATTCTT+TGG + chr1_2:74294943-74294962 Msa0092070:intron 15.0%
!! TTAACCAAAGAATTAATATA+TGG - chr1_2:74294950-74294969 None:intergenic 15.0%
!! AAAGAAGAAGAAATAATTAA+AGG + chr1_2:74295097-74295116 Msa0092070:intron 15.0%
!! AGATCATAATAATATTGTTT+GGG - chr1_2:74295415-74295434 None:intergenic 15.0%
!!! ATTTAAAGTGTATACAAAAT+AGG + chr1_2:74295909-74295928 Msa0092070:intron 15.0%
!! AAAAAAATTATCGTTATTGA+TGG + chr1_2:74296004-74296023 Msa0092070:intron 15.0%
!!! TTATATGTGTAGTTTTTATT+AGG + chr1_2:74297117-74297136 Msa0092070:intron 15.0%
!!! TGTTTTAATGTTTTTTGAAA+TGG - chr1_2:74297345-74297364 None:intergenic 15.0%
!! TAAATCTCTTAATTAAGATT+TGG - chr1_2:74297593-74297612 None:intergenic 15.0%
!!! CTTTAAAAATCTAGTTATTT+TGG + chr1_2:74297704-74297723 Msa0092070:intron 15.0%
!!! ATGATTAATTTTGTAAGCTA+GGG - chr1_2:74294671-74294690 None:intergenic 20.0%
!! TAGCTTACAAAATTAATCAT+GGG + chr1_2:74294671-74294690 Msa0092070:exon 20.0%
!!! TTTTTTTGTAAAGGTAATGA+AGG - chr1_2:74294763-74294782 None:intergenic 20.0%
!!! CATTTGTGATTTTTTTGTAA+AGG - chr1_2:74294772-74294791 None:intergenic 20.0%
!! TTACAAAAAAATCACAAATG+AGG + chr1_2:74294772-74294791 Msa0092070:CDS 20.0%
!! TACAACATCATTAATTAACT+TGG + chr1_2:74294993-74295012 Msa0092070:intron 20.0%
!!! CTTTTAAAAAGGCAAATATA+AGG - chr1_2:74295059-74295078 None:intergenic 20.0%
!!! ATATTTGCCTTTTTAAAAGA+AGG + chr1_2:74295060-74295079 Msa0092070:intron 20.0%
!!! AAAGTTTCCTTCTTTTAAAA+AGG - chr1_2:74295070-74295089 None:intergenic 20.0%
!!! TTTTTAAAAGAAGGAAACTT+TGG + chr1_2:74295069-74295088 Msa0092070:intron 20.0%
!! ATAAAAGAGAAAATTGGTTA+TGG + chr1_2:74295179-74295198 Msa0092070:intron 20.0%
!! TAAAAGAGAAAATTGGTTAT+GGG + chr1_2:74295180-74295199 Msa0092070:intron 20.0%
!! ACAAAAGCAATTATGTAAAA+CGG - chr1_2:74295345-74295364 None:intergenic 20.0%
!! GAGATCATAATAATATTGTT+TGG - chr1_2:74295416-74295435 None:intergenic 20.0%
!! ATTAATCAAATGAAAGTGAA+AGG - chr1_2:74295541-74295560 None:intergenic 20.0%
!! TTATGTTACAATTTATGACA+AGG - chr1_2:74295774-74295793 None:intergenic 20.0%
!!! GTATATTTTGTAGACTTTAA+TGG - chr1_2:74295972-74295991 None:intergenic 20.0%
!!! ATTAATCAAACATTAGCTTA+TGG + chr1_2:74296166-74296185 Msa0092070:intron 20.0%
!! TAACATGAAAAATTGCTTAT+TGG - chr1_2:74296238-74296257 None:intergenic 20.0%
!!! AAACTCTTCTTTTTGTAAAT+GGG + chr1_2:74296262-74296281 Msa0092070:intron 20.0%
!!! ATAAATGACATGTAATTTTC+AGG - chr1_2:74296403-74296422 None:intergenic 20.0%
!! CAATAATGACACAAATAATT+TGG - chr1_2:74296473-74296492 None:intergenic 20.0%
!!! AAAGCTAGCTATTTAAAATA+AGG + chr1_2:74297487-74297506 Msa0092070:intron 20.0%
!! AGAATAGAATATTTCATAAG+TGG + chr1_2:74297637-74297656 Msa0092070:intron 20.0%
!!! GATTCATCAAAGAATTATTT+TGG - chr1_2:74297962-74297981 None:intergenic 20.0%
!! GTGTACATATATTATGTATA+TGG + chr1_2:74298180-74298199 Msa0092070:three_prime_UTR 20.0%
!! ATGTAATCATATATAGTGTT+TGG + chr1_2:74298241-74298260 Msa0092070:three_prime_UTR 20.0%
! TTTATGGATATATATGGTAG+AGG - chr1_2:74294602-74294621 None:intergenic 25.0%
!! CATGATTAATTTTGTAAGCT+AGG - chr1_2:74294672-74294691 None:intergenic 25.0%
! CTAGCTTACAAAATTAATCA+TGG + chr1_2:74294670-74294689 Msa0092070:exon 25.0%
! AAAAGAGAAAATTGGTTATG+GGG + chr1_2:74295181-74295200 Msa0092070:intron 25.0%
! TCAATGATTAAGGCTATTAA+TGG + chr1_2:74295246-74295265 Msa0092070:intron 25.0%
!! TTTTCTTTATGCGGTTAAAA+CGG + chr1_2:74295477-74295496 Msa0092070:intron 25.0%
! ATATAGACTTAAATACATGC+AGG - chr1_2:74295635-74295654 None:intergenic 25.0%
!! ATCTTTCACACAAATGTTTT+GGG + chr1_2:74295693-74295712 Msa0092070:intron 25.0%
!! TCTTTTGTGAATGATAATTG+AGG + chr1_2:74295737-74295756 Msa0092070:intron 25.0%
! TTACAATTTATGACAAGGTA+TGG - chr1_2:74295769-74295788 None:intergenic 25.0%
! ATACACTATCAAAGCAAAAT+AGG + chr1_2:74295885-74295904 Msa0092070:intron 25.0%
!! ATCGTTATTGATGGTAAAAT+TGG + chr1_2:74296013-74296032 Msa0092070:intron 25.0%
!! CAAACTCTTCTTTTTGTAAA+TGG + chr1_2:74296261-74296280 Msa0092070:intron 25.0%
!! AACTCTTCTTTTTGTAAATG+GGG + chr1_2:74296263-74296282 Msa0092070:intron 25.0%
! ACTGAAAAATACAAAGAGAA+CGG + chr1_2:74296291-74296310 Msa0092070:intron 25.0%
!!! CTTTTGTTTTTTTTCTTCAG+AGG + chr1_2:74296656-74296675 Msa0092070:intron 25.0%
! AGTAAAAATAAACGTACCTT+AGG - chr1_2:74296939-74296958 None:intergenic 25.0%
! ACGTTTGAAAATTGATTGAA+AGG - chr1_2:74296971-74296990 None:intergenic 25.0%
! ATGTAATTGCCACATAATAA+AGG + chr1_2:74297046-74297065 Msa0092070:intron 25.0%
! TGTAATTGCCACATAATAAA+GGG + chr1_2:74297047-74297066 Msa0092070:intron 25.0%
! AAGATAAAATATCTCCATCA+AGG - chr1_2:74297282-74297301 None:intergenic 25.0%
! TTAAAATAAGGTGAGAAAGT+TGG + chr1_2:74297499-74297518 Msa0092070:intron 25.0%
!! ATTGTTGTCATTGATTGAAT+TGG + chr1_2:74297612-74297631 Msa0092070:intron 25.0%
!! AAATGATTCTCACGTATTTT+AGG + chr1_2:74297665-74297684 Msa0092070:intron 25.0%
!!! TTCAAACTTTTGTTGATTAC+AGG + chr1_2:74297752-74297771 Msa0092070:intron 25.0%
!! TTGTGTAGAGTATTTCATAA+AGG + chr1_2:74297786-74297805 Msa0092070:CDS 25.0%
!! GAATCTTCTTCAATTTTCTA+AGG + chr1_2:74297977-74297996 Msa0092070:CDS 25.0%
! AGTGGGTTTATGGATATATA+TGG - chr1_2:74294608-74294627 None:intergenic 30.0%
! TGAAATTTTGGATAGGTAGT+GGG - chr1_2:74294625-74294644 None:intergenic 30.0%
! TTGAAATTTTGGATAGGTAG+TGG - chr1_2:74294626-74294645 None:intergenic 30.0%
AATTGACATTCACAAACACA+TGG + chr1_2:74294968-74294987 Msa0092070:intron 30.0%
GTTCAGTTCTTCAATGATTA+AGG + chr1_2:74295236-74295255 Msa0092070:intron 30.0%
TACAGCAGAAAAAAACAACT+AGG - chr1_2:74295385-74295404 None:intergenic 30.0%
!! TCTTCTTGCTTTTCTTTATG+CGG + chr1_2:74295468-74295487 Msa0092070:intron 30.0%
!! CTCTAGGTATTTTACTTTTG+TGG + chr1_2:74295503-74295522 Msa0092070:intron 30.0%
GTGAAAGATCAAATGTTGTA+TGG - chr1_2:74295682-74295701 None:intergenic 30.0%
! GATCTTTCACACAAATGTTT+TGG + chr1_2:74295692-74295711 Msa0092070:intron 30.0%
AGAAAGTCGTCATACAAAAT+AGG + chr1_2:74295850-74295869 Msa0092070:intron 30.0%
TATGGAAAAACATGTGACTT+AGG - chr1_2:74296593-74296612 None:intergenic 30.0%
! AAGTCACATGTTTTTCCATA+TGG + chr1_2:74296593-74296612 Msa0092070:intron 30.0%
!!! GGTCAATTTTTAGTACCATA+TGG - chr1_2:74296611-74296630 None:intergenic 30.0%
CATGCATGAATAGAGATAAT+AGG - chr1_2:74296632-74296651 None:intergenic 30.0%
!!! TTGTTTTTTTTCTTCAGAGG+TGG + chr1_2:74296659-74296678 Msa0092070:intron 30.0%
TAAAACCTGTGGCATATTTA+CGG - chr1_2:74296728-74296747 None:intergenic 30.0%
AAAAATAAACGTACCTTAGG+TGG - chr1_2:74296936-74296955 None:intergenic 30.0%
! TTTTCAAACGTGACAATGAT+AGG + chr1_2:74296980-74296999 Msa0092070:intron 30.0%
! AAGATTTCAACTTGCTTCTT+AGG - chr1_2:74297164-74297183 None:intergenic 30.0%
GAACTACTATTATACCTTGA+TGG + chr1_2:74297265-74297284 Msa0092070:intron 30.0%
!!! TTAGCATCTTTTTGAGATAG+AGG + chr1_2:74297536-74297555 Msa0092070:intron 30.0%
CATTTCTTGTGGACTTAATT+TGG - chr1_2:74297829-74297848 None:intergenic 30.0%
ATAGTCTCATACATTTCTTG+TGG - chr1_2:74297840-74297859 None:intergenic 30.0%
AAGATGAGAAAGAAGCAAAT+TGG - chr1_2:74297905-74297924 None:intergenic 30.0%
CTCATTTAAATGACAATGGT+GGG - chr1_2:74297937-74297956 None:intergenic 30.0%
TCTCATTTAAATGACAATGG+TGG - chr1_2:74297938-74297957 None:intergenic 30.0%
GGTTCTCATTTAAATGACAA+TGG - chr1_2:74297941-74297960 None:intergenic 30.0%
ATTAGTCCTAAATGTGATGA+TGG + chr1_2:74298032-74298051 Msa0092070:CDS 30.0%
!! CTAAATGTGATGATGGATAT+GGG + chr1_2:74298039-74298058 Msa0092070:CDS 30.0%
! TATATAGTGTTTGGCTTCAT+AGG + chr1_2:74298250-74298269 Msa0092070:three_prime_UTR 30.0%
! ATATAGTGTTTGGCTTCATA+GGG + chr1_2:74298251-74298270 Msa0092070:three_prime_UTR 30.0%
TTAGGGTTTCATTTGGTTAT+TGG + chr1_2:74298341-74298360 Msa0092070:three_prime_UTR 30.0%
TAGGGTTTCATTTGGTTATT+GGG + chr1_2:74298342-74298361 Msa0092070:three_prime_UTR 30.0%
! ACACATTGATTAGCATTTGT+AGG + chr1_2:74298375-74298394 Msa0092070:three_prime_UTR 30.0%
! CACATTGATTAGCATTTGTA+GGG + chr1_2:74298376-74298395 Msa0092070:three_prime_UTR 30.0%
! ACATTGATTAGCATTTGTAG+GGG + chr1_2:74298377-74298396 Msa0092070:three_prime_UTR 30.0%
TAGGATAAAATCGAAAGCCA+GGG - chr1_2:74294724-74294743 None:intergenic 35.0%
TTATCCTAGTGATGAAGAGT+TGG + chr1_2:74294736-74294755 Msa0092070:CDS 35.0%
ACAAATGAGGATGTTCTCAA+GGG + chr1_2:74294785-74294804 Msa0092070:CDS 35.0%
TGCTTTGCGAATATTCTGTA+AGG + chr1_2:74296088-74296107 Msa0092070:intron 35.0%
!! ACCTAAGCATGGTATTTTTG+GGG - chr1_2:74296356-74296375 None:intergenic 35.0%
! GACCTAAGCATGGTATTTTT+GGG - chr1_2:74296357-74296376 None:intergenic 35.0%
! TGACCTAAGCATGGTATTTT+TGG - chr1_2:74296358-74296377 None:intergenic 35.0%
!! TTTCAGGTTTCTAATTGAGC+CGG - chr1_2:74296387-74296406 None:intergenic 35.0%
GACTTAGGTAGGTAAAACAA+GGG - chr1_2:74296578-74296597 None:intergenic 35.0%
TGACTTAGGTAGGTAAAACA+AGG - chr1_2:74296579-74296598 None:intergenic 35.0%
GAAAAACATGTGACTTAGGT+AGG - chr1_2:74296589-74296608 None:intergenic 35.0%
!!! CACAGGTTTTAGAACCAATA+GGG + chr1_2:74296737-74296756 Msa0092070:CDS 35.0%
GGAAAACTCTAGTGTTCTAT+AGG + chr1_2:74296841-74296860 Msa0092070:CDS 35.0%
TATAGGAATAGAGCTCCAAA+TGG + chr1_2:74296858-74296877 Msa0092070:CDS 35.0%
!!! CAACCTGTTTTGATTCCATT+TGG - chr1_2:74296876-74296895 None:intergenic 35.0%
CAAATGGAATCAAAACAGGT+TGG + chr1_2:74296874-74296893 Msa0092070:CDS 35.0%
GATCATGCATGAGTTTAGAT+TGG + chr1_2:74296896-74296915 Msa0092070:CDS 35.0%
ATCACACTCCCTTTATTATG+TGG - chr1_2:74297058-74297077 None:intergenic 35.0%
ATTAAACCCTCACAAACCTT+AGG - chr1_2:74297085-74297104 None:intergenic 35.0%
AAATAAGGTGAGAAAGTTGG+AGG + chr1_2:74297502-74297521 Msa0092070:intron 35.0%
AGGAAAACAATGTGTATGTG+AGG + chr1_2:74297556-74297575 Msa0092070:intron 35.0%
!!! TGTGTATGTGAGGACTTTTT+TGG + chr1_2:74297566-74297585 Msa0092070:intron 35.0%
! TTTGTTGATTACAGGAAGAC+TGG + chr1_2:74297760-74297779 Msa0092070:intron 35.0%
! TTGTTGATTACAGGAAGACT+GGG + chr1_2:74297761-74297780 Msa0092070:intron 35.0%
CCATATCCATCATCACATTT+AGG - chr1_2:74298041-74298060 None:intergenic 35.0%
!! CCTAAATGTGATGATGGATA+TGG + chr1_2:74298038-74298057 Msa0092070:CDS 35.0%
!!! ATGATGGATATGGGTTTTTG+TGG + chr1_2:74298048-74298067 Msa0092070:CDS 35.0%
!! TGATGGATATGGGTTTTTGT+GGG + chr1_2:74298049-74298068 Msa0092070:CDS 35.0%
GATTTGGAAGATCATCATGA+TGG + chr1_2:74298077-74298096 Msa0092070:CDS 35.0%
!! CGAGGTTGATAATAATAGCA+TGG + chr1_2:74298133-74298152 Msa0092070:CDS 35.0%
GGTTCTTATCTCTCAAGTTA+CGG + chr1_2:74298201-74298220 Msa0092070:three_prime_UTR 35.0%
TCTCAAGTTACGGAAATTTG+TGG + chr1_2:74298211-74298230 Msa0092070:three_prime_UTR 35.0%
! TTTCAAGTGTTCAGTGTGAT+TGG + chr1_2:74298318-74298337 Msa0092070:three_prime_UTR 35.0%
! TGATTGGTTAGGGTTTCATT+TGG + chr1_2:74298334-74298353 Msa0092070:three_prime_UTR 35.0%
GTTTCATTTGGTTATTGGGA+GGG + chr1_2:74298346-74298365 Msa0092070:three_prime_UTR 35.0%
TTTCATTTGGTTATTGGGAG+GGG + chr1_2:74298347-74298366 Msa0092070:three_prime_UTR 35.0%
! CATTGATTAGCATTTGTAGG+GGG + chr1_2:74298378-74298397 Msa0092070:three_prime_UTR 35.0%
GGATATATATGGTAGAGGTG+TGG - chr1_2:74294597-74294616 None:intergenic 40.0%
!! TTGGATAGGTAGTGGGTTTA+TGG - chr1_2:74294618-74294637 None:intergenic 40.0%
ATCATGGGTCTTAGAGATGT+CGG + chr1_2:74294686-74294705 Msa0092070:exon 40.0%
AGGATAAAATCGAAAGCCAG+GGG - chr1_2:74294723-74294742 None:intergenic 40.0%
CTAGGATAAAATCGAAAGCC+AGG - chr1_2:74294725-74294744 None:intergenic 40.0%
CACAAATGAGGATGTTCTCA+AGG + chr1_2:74294784-74294803 Msa0092070:CDS 40.0%
ATGCAAGTCAATTTCCTCCA+AGG - chr1_2:74294813-74294832 None:intergenic 40.0%
TATATACCAGGAAGTTGCCA+AGG - chr1_2:74294845-74294864 None:intergenic 40.0%
ACCCCAAAAATACCATGCTT+AGG + chr1_2:74296352-74296371 Msa0092070:intron 40.0%
! CATGCTTAGGTCACTTTATC+CGG + chr1_2:74296365-74296384 Msa0092070:intron 40.0%
CTAAACTCAACGCAACTGAA+TGG + chr1_2:74296682-74296701 Msa0092070:CDS 40.0%
!! CCTATTGGTTCTAAAACCTG+TGG - chr1_2:74296739-74296758 None:intergenic 40.0%
!!! CCACAGGTTTTAGAACCAAT+AGG + chr1_2:74296736-74296755 Msa0092070:CDS 40.0%
GTTTGATCCAATCACACATG+AGG + chr1_2:74296806-74296825 Msa0092070:CDS 40.0%
CAATCACACATGAGGTTGTA+GGG + chr1_2:74296814-74296833 Msa0092070:CDS 40.0%
GCTCCAAATGGAATCAAAAC+AGG + chr1_2:74296870-74296889 Msa0092070:CDS 40.0%
ATGAAGCCTAAGGTTTGTGA+GGG + chr1_2:74297076-74297095 Msa0092070:intron 40.0%
AATGCCCATTTAGTAGTGTG+AGG + chr1_2:74297207-74297226 Msa0092070:intron 40.0%
GGATCCTCACACTACTAAAT+GGG - chr1_2:74297214-74297233 None:intergenic 40.0%
TGGATCCTCACACTACTAAA+TGG - chr1_2:74297215-74297234 None:intergenic 40.0%
GCAAATTGGTTGTACCCAAT+TGG - chr1_2:74297891-74297910 None:intergenic 40.0%
! ATATGGGTTTTTGTGGGACA+TGG + chr1_2:74298055-74298074 Msa0092070:CDS 40.0%
! GTTTTTGTGGGACATGGATT+TGG + chr1_2:74298061-74298080 Msa0092070:CDS 40.0%
TATAATCCCAATCATGCACG+TGG - chr1_2:74298281-74298300 None:intergenic 40.0%
ACGTGCATGATTGGGATTAT+AGG + chr1_2:74298280-74298299 Msa0092070:three_prime_UTR 40.0%
! AGTGTTCAGTGTGATTGGTT+AGG + chr1_2:74298323-74298342 Msa0092070:three_prime_UTR 40.0%
! GTGTTCAGTGTGATTGGTTA+GGG + chr1_2:74298324-74298343 Msa0092070:three_prime_UTR 40.0%
GGTTTCATTTGGTTATTGGG+AGG + chr1_2:74298345-74298364 Msa0092070:three_prime_UTR 40.0%
TTCATTTGGTTATTGGGAGG+GGG + chr1_2:74298348-74298367 Msa0092070:three_prime_UTR 40.0%
TGTAAGCTAGGGAGAGAAAG+AGG - chr1_2:74294660-74294679 None:intergenic 45.0%
GGATAAAATCGAAAGCCAGG+GGG - chr1_2:74294722-74294741 None:intergenic 45.0%
AGGACCAACTCTTCATCACT+AGG - chr1_2:74294743-74294762 None:intergenic 45.0%
! GGGGTTTTGCAGTTACGTTA+CGG + chr1_2:74295200-74295219 Msa0092070:intron 45.0%
CGGATAAAGTGACCTAAGCA+TGG - chr1_2:74296367-74296386 None:intergenic 45.0%
ACCAATAGGGCTACAACATC+TGG + chr1_2:74296750-74296769 Msa0092070:CDS 45.0%
CCAATAGGGCTACAACATCT+GGG + chr1_2:74296751-74296770 Msa0092070:CDS 45.0%
!! TCTGGGTATTGGAAAGCAAC+AGG + chr1_2:74296768-74296787 Msa0092070:CDS 45.0%
!! CTGGGTATTGGAAAGCAACA+GGG + chr1_2:74296769-74296788 Msa0092070:CDS 45.0%
GTATTGGAAAGCAACAGGGA+AGG + chr1_2:74296773-74296792 Msa0092070:CDS 45.0%
CCTACAACCTCATGTGTGAT+TGG - chr1_2:74296816-74296835 None:intergenic 45.0%
CCAATCACACATGAGGTTGT+AGG + chr1_2:74296813-74296832 Msa0092070:CDS 45.0%
TACCTTAGGTGGCATATGTG+GGG - chr1_2:74296925-74296944 None:intergenic 45.0%
GTACCTTAGGTGGCATATGT+GGG - chr1_2:74296926-74296945 None:intergenic 45.0%
GATGAAGCCTAAGGTTTGTG+AGG + chr1_2:74297075-74297094 Msa0092070:intron 45.0%
!! TCAAAGCGCGTTAGCTTTAG+TGG - chr1_2:74297235-74297254 None:intergenic 45.0%
GAGAAAGTTGGAGGAGTGAT+TGG + chr1_2:74297511-74297530 Msa0092070:intron 45.0%
!! TGGTTTGGTTGGTTAGGGAT+GGG - chr1_2:74297866-74297885 None:intergenic 45.0%
!! ATGGTTTGGTTGGTTAGGGA+TGG - chr1_2:74297867-74297886 None:intergenic 45.0%
!! TGGCATGGTTTGGTTGGTTA+GGG - chr1_2:74297871-74297890 None:intergenic 45.0%
!! TTGGCATGGTTTGGTTGGTT+AGG - chr1_2:74297872-74297891 None:intergenic 45.0%
ACCAACCAAACCATGCCAAT+TGG + chr1_2:74297873-74297892 Msa0092070:CDS 45.0%
CCAACCAAACCATGCCAATT+GGG + chr1_2:74297874-74297893 Msa0092070:CDS 45.0%
TGTACCCAATTGGCATGGTT+TGG - chr1_2:74297881-74297900 None:intergenic 45.0%
TTGGTTGTACCCAATTGGCA+TGG - chr1_2:74297886-74297905 None:intergenic 45.0%
! GGAAGATCATCATGATGGTG+TGG + chr1_2:74298082-74298101 Msa0092070:CDS 45.0%
CATTCCTTCCATGTCTGATG+AGG - chr1_2:74298108-74298127 None:intergenic 45.0%
CATGGAAGGAATGAGATTCG+AGG + chr1_2:74298115-74298134 Msa0092070:CDS 45.0%
!! GGATGTTCTCAAGGGTACCT+TGG + chr1_2:74294793-74294812 Msa0092070:CDS 50.0%
!! TGTTCTCAAGGGTACCTTGG+AGG + chr1_2:74294796-74294815 Msa0092070:CDS 50.0%
ACTTGCATACATGCGAGCCT+TGG + chr1_2:74294825-74294844 Msa0092070:CDS 50.0%
GCGGTTAAAACGGCTTCTCT+AGG + chr1_2:74295487-74295506 Msa0092070:intron 50.0%
CGTGACCGTAAATATGCCAC+AGG + chr1_2:74296720-74296739 Msa0092070:CDS 50.0%
CCCAGATGTTGTAGCCCTAT+TGG - chr1_2:74296754-74296773 None:intergenic 50.0%
GGGCTACAACATCTGGGTAT+TGG + chr1_2:74296757-74296776 Msa0092070:CDS 50.0%
AGCAACAGGGAAGGATCGAA+CGG + chr1_2:74296782-74296801 Msa0092070:CDS 50.0%
CACATGAGGTTGTAGGGATG+AGG + chr1_2:74296820-74296839 Msa0092070:CDS 50.0%
CGTACCTTAGGTGGCATATG+TGG - chr1_2:74296927-74296946 None:intergenic 50.0%
! AGGGAGTGTGATGAAGCCTA+AGG + chr1_2:74297066-74297085 Msa0092070:intron 50.0%
! GGTTTGGTTGGTTAGGGATG+GGG - chr1_2:74297865-74297884 None:intergenic 50.0%
!! CCCAATTGGCATGGTTTGGT+TGG - chr1_2:74297877-74297896 None:intergenic 50.0%
GACCCCACATATGCCACCTA+AGG + chr1_2:74296920-74296939 Msa0092070:CDS 55.0%
TGGTGTGGCCTCATCAGACA+TGG + chr1_2:74298097-74298116 Msa0092070:CDS 55.0%
GTGGCCTCATCAGACATGGA+AGG + chr1_2:74298101-74298120 Msa0092070:CDS 55.0%
GGCATGCCACGTGCATGATT+GGG + chr1_2:74298272-74298291 Msa0092070:three_prime_UTR 55.0%
TGCGAGCCTTGGCAACTTCC+TGG + chr1_2:74294836-74294855 Msa0092070:CDS 60.0%
GGGCATGCCACGTGCATGAT+TGG + chr1_2:74298271-74298290 Msa0092070:three_prime_UTR 60.0%
! GTCGGTGCTTCACTTCCCCC+TGG + chr1_2:74294704-74294723 Msa0092070:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 74294538 74298438 74294538 ID=Msa0092070;Name=Msa0092070
chr1_2 mRNA 74294538 74298438 74294538 ID=Msa0092070-mRNA-1;Parent=Msa0092070;Name=Msa0092070-mRNA-1;_AED=0.04;_eAED=0.04;_QI=151|1|1|1|1|1|3|272|275
chr1_2 exon 74294538 74294857 74294538 ID=Msa0092070-mRNA-1:exon:26203;Parent=Msa0092070-mRNA-1
chr1_2 exon 74296676 74296941 74296676 ID=Msa0092070-mRNA-1:exon:26204;Parent=Msa0092070-mRNA-1
chr1_2 exon 74297774 74298438 74297774 ID=Msa0092070-mRNA-1:exon:26205;Parent=Msa0092070-mRNA-1
chr1_2 five_prime_UTR 74294538 74294688 74294538 ID=Msa0092070-mRNA-1:five_prime_utr;Parent=Msa0092070-mRNA-1
chr1_2 CDS 74294689 74294857 74294689 ID=Msa0092070-mRNA-1:cds;Parent=Msa0092070-mRNA-1
chr1_2 CDS 74296676 74296941 74296676 ID=Msa0092070-mRNA-1:cds;Parent=Msa0092070-mRNA-1
chr1_2 CDS 74297774 74298166 74297774 ID=Msa0092070-mRNA-1:cds;Parent=Msa0092070-mRNA-1
chr1_2 three_prime_UTR 74298167 74298438 74298167 ID=Msa0092070-mRNA-1:three_prime_utr;Parent=Msa0092070-mRNA-1
Gene Sequence

>Msa0092070

ATGGGTCTTAGAGATGTCGGTGCTTCACTTCCCCCTGGCTTTCGATTTTATCCTAGTGATGAAGAGTTGGTCCTTCATTACCTTTACAAAAAAATCACAAATGAGGATGTTCTCAAGGGTACCTTGGAGGAAATTGACTTGCATACATGCGAGCCTTGGCAACTTCCTGAGGTGGCTAAACTCAACGCAACTGAATGGTACTTCTTCAGCTTTCGTGACCGTAAATATGCCACAGGTTTTAGAACCAATAGGGCTACAACATCTGGGTATTGGAAAGCAACAGGGAAGGATCGAACGGTGTTTGATCCAATCACACATGAGGTTGTAGGGATGAGGAAAACTCTAGTGTTCTATAGGAATAGAGCTCCAAATGGAATCAAAACAGGTTGGATCATGCATGAGTTTAGATTGGAGACCCCACATATGCCACCTAAGGAAGACTGGGTTTTGTGTAGAGTATTTCATAAAGGCAAGACAGAAAATAATGCCAAATTAAGTCCACAAGAAATGTATGAGACTATAGCCCCATCCCTAACCAACCAAACCATGCCAATTGGGTACAACCAATTTGCTTCTTTCTCATCTTCAATGACAACCCACCATTGTCATTTAAATGAGAACCAAAATAATTCTTTGATGAATCTTCTTCAATTTTCTAAGGAAACAAACAACAATTGTAGTAGTATTACTCAAATTAGTCCTAAATGTGATGATGGATATGGGTTTTTGTGGGACATGGATTTGGAAGATCATCATGATGGTGTGGCCTCATCAGACATGGAAGGAATGAGATTCGAGGTTGATAATAATAGCATGGTCTTGTTATAA
Protein sequence

>Msa0092070

MGLRDVGASLPPGFRFYPSDEELVLHYLYKKITNEDVLKGTLEEIDLHTCEPWQLPEVAKLNATEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVFDPITHEVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKGKTENNAKLSPQEMYETIAPSLTNQTMPIGYNQFASFSSSMTTHHCHLNENQNNSLMNLLQFSKETNNNCSSITQISPKCDDGYGFLWDMDLEDHHDGVASSDMEGMRFEVDNNSMVLL*