Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0092700 | sp|Q9M886|LBD41_ARATH | 40.529 | 227 | 122 | 5 | 1 | 225 | 1 | 216 | 2.75e-52 | 172 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0092700 | G7ZZB8 | 95.671 | 231 | 10 | 0 | 1 | 231 | 1 | 231 | 1.82e-163 | 460 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0092700 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0092700 | MtrunA17_Chr6g0469271 | 93.939 | 231 | 14 | 0 | 1 | 231 | 1 | 231 | 1.40e-164 | 453 |
| Msa0092700 | MtrunA17_Chr6g0470631 | 90.476 | 231 | 22 | 0 | 1 | 231 | 1 | 231 | 1.86e-158 | 438 |
| Msa0092700 | MtrunA17_Chr6g0470651 | 88.745 | 231 | 26 | 0 | 1 | 231 | 1 | 231 | 2.34e-156 | 432 |
| Msa0092700 | MtrunA17_Chr1g0209841 | 91.342 | 231 | 10 | 1 | 1 | 231 | 1 | 221 | 2.44e-156 | 432 |
| Msa0092700 | MtrunA17_Chr6g0457431 | 55.422 | 166 | 56 | 6 | 1 | 160 | 1 | 154 | 4.58e-60 | 186 |
| Msa0092700 | MtrunA17_Chr7g0215281 | 44.053 | 227 | 109 | 7 | 1 | 223 | 1 | 213 | 8.42e-56 | 180 |
| Msa0092700 | MtrunA17_Chr4g0053911 | 56.303 | 119 | 48 | 2 | 3 | 119 | 1 | 117 | 1.65e-46 | 154 |
| Msa0092700 | MtrunA17_Chr5g0401401 | 44.970 | 169 | 82 | 5 | 3 | 165 | 1 | 164 | 5.49e-45 | 150 |
| Msa0092700 | MtrunA17_Chr1g0207471 | 44.882 | 127 | 63 | 2 | 3 | 124 | 1 | 125 | 7.99e-36 | 125 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0092700 | AT3G02550.1 | 40.529 | 227 | 122 | 5 | 1 | 225 | 1 | 216 | 2.80e-53 | 172 |
| Msa0092700 | AT1G68510.1 | 55.102 | 147 | 54 | 3 | 1 | 145 | 1 | 137 | 3.07e-53 | 171 |
| Msa0092700 | AT1G67100.1 | 54.861 | 144 | 57 | 3 | 1 | 144 | 1 | 136 | 5.96e-50 | 163 |
| Msa0092700 | AT3G49940.1 | 53.659 | 123 | 55 | 1 | 3 | 125 | 1 | 121 | 1.41e-45 | 152 |
| Msa0092700 | AT5G67420.2 | 55.963 | 109 | 46 | 1 | 3 | 111 | 1 | 107 | 1.14e-43 | 147 |
| Msa0092700 | AT5G67420.1 | 55.963 | 109 | 46 | 1 | 3 | 111 | 1 | 107 | 1.14e-43 | 147 |
| Msa0092700 | AT4G37540.1 | 57.798 | 109 | 44 | 1 | 3 | 111 | 1 | 107 | 1.50e-43 | 147 |
Find 62 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGGCATGCCCTTGGGATTC+AGG | 0.157225 | 1_2:-75421699 | None:intergenic |
| ATGGGGCGCTTGGCTTATTT+TGG | 0.165756 | 1_2:+75422177 | Msa0092700:CDS |
| AAGAATACCAACATGGAAAT+TGG | 0.166066 | 1_2:+75422476 | Msa0092700:CDS |
| ACCGGTTCGGCCATAAAATT+TGG | 0.172606 | 1_2:-75421733 | None:intergenic |
| ATGGCGTATATCATAGGTTT+TGG | 0.254539 | 1_2:-75422330 | None:intergenic |
| TGCTGAGAATCAAGTGAATT+TGG | 0.279066 | 1_2:+75422541 | Msa0092700:CDS |
| CCATGTTGGTATTCTTCAAA+AGG | 0.367139 | 1_2:-75422469 | None:intergenic |
| AGAATACCAACATGGAAATT+GGG | 0.374565 | 1_2:+75422477 | Msa0092700:CDS |
| TGCCACATGGCGTATATCAT+AGG | 0.386203 | 1_2:-75422336 | None:intergenic |
| CTTTGATTGCCAATCAACTA+AGG | 0.392207 | 1_2:+75422577 | Msa0092700:CDS |
| CATAAAATTTGGCAAGGAAG+AGG | 0.404166 | 1_2:-75421722 | None:intergenic |
| GACTGAACCAACTCGTGGCT+TGG | 0.415502 | 1_2:-75422423 | None:intergenic |
| ACTGAACCAACTCGTGGCTT+GGG | 0.424285 | 1_2:-75422422 | None:intergenic |
| GTGAATTTGGAACTCACTCT+TGG | 0.424885 | 1_2:+75422554 | Msa0092700:CDS |
| GGAAGAGGGTGGCATGCCCT+TGG | 0.443110 | 1_2:-75421707 | None:intergenic |
| GCAACTGATCCACTCAAGGC+AGG | 0.443950 | 1_2:-75421676 | None:intergenic |
| TGGCATGCCCTTGGGATTCA+GGG | 0.444879 | 1_2:-75421698 | None:intergenic |
| AAAACTCAATTCAAAAGAGC+TGG | 0.446487 | 1_2:+75422386 | Msa0092700:CDS |
| ATTGATGGGCAGACATCATC+AGG | 0.455052 | 1_2:+75422278 | Msa0092700:CDS |
| GCAGTTGAAGCTGTGCTGAC+TGG | 0.456964 | 1_2:+75422227 | Msa0092700:CDS |
| AGATTGGTGAATCCCACATA+TGG | 0.458590 | 1_2:+75422158 | Msa0092700:CDS |
| TAAGCCAAGCGCCCCATATG+TGG | 0.471835 | 1_2:-75422171 | None:intergenic |
| CATGTTGGTATTCTTCAAAA+GGG | 0.477135 | 1_2:-75422468 | None:intergenic |
| GAAGAGGGTGGCATGCCCTT+GGG | 0.479104 | 1_2:-75421706 | None:intergenic |
| GGAGATTGAGCAAACCGGTT+CGG | 0.494518 | 1_2:-75421746 | None:intergenic |
| AATCATCACTACAACCTTTG+CGG | 0.504650 | 1_2:-75421641 | None:intergenic |
| GATTGGTGAATCCCACATAT+GGG | 0.508471 | 1_2:+75422159 | Msa0092700:CDS |
| GATATACGCCATGTGGCAAA+AGG | 0.516720 | 1_2:+75422341 | Msa0092700:CDS |
| AATCCCACATATGGGGCGCT+TGG | 0.518707 | 1_2:+75422167 | Msa0092700:CDS |
| GGTGAGGAGATTGAGCAAAC+CGG | 0.524508 | 1_2:-75421751 | None:intergenic |
| TCATCAAGCCCTGCCTTGAG+TGG | 0.538225 | 1_2:+75421667 | Msa0092700:CDS |
| GTACCAATGTGGACATCAAA+GGG | 0.546635 | 1_2:+75422363 | Msa0092700:CDS |
| TTTCCCTTTGATGTCCACAT+TGG | 0.551024 | 1_2:-75422366 | None:intergenic |
| GGTACCAATGTGGACATCAA+AGG | 0.551224 | 1_2:+75422362 | Msa0092700:CDS |
| GTACGAGGCAGCTGGTAGAT+TGG | 0.560594 | 1_2:+75422142 | Msa0092700:CDS |
| GAATACCAACATGGAAATTG+GGG | 0.561319 | 1_2:+75422478 | Msa0092700:CDS |
| CTGAAGCCCAAGCCACGAGT+TGG | 0.576033 | 1_2:+75422416 | Msa0092700:CDS |
| AGTCTCCCCAATTTCCATGT+TGG | 0.576332 | 1_2:-75422483 | None:intergenic |
| ATAAAATTTGGCAAGGAAGA+GGG | 0.578936 | 1_2:-75421721 | None:intergenic |
| TTCGGCCATAAAATTTGGCA+AGG | 0.579687 | 1_2:-75421728 | None:intergenic |
| TAATGAAGTTGAGTTGCAAT+GGG | 0.583194 | 1_2:+75421607 | None:intergenic |
| TTTGATTGCCAATCAACTAA+GGG | 0.586746 | 1_2:+75422578 | Msa0092700:CDS |
| AAGCCAAGCGCCCCATATGT+GGG | 0.589682 | 1_2:-75422170 | None:intergenic |
| AAACTCAATTCAAAAGAGCT+GGG | 0.590181 | 1_2:+75422387 | Msa0092700:CDS |
| CAACTGATCCACTCAAGGCA+GGG | 0.595554 | 1_2:-75421675 | None:intergenic |
| ATCAGTTGCCCTGAATCCCA+AGG | 0.599742 | 1_2:+75421690 | Msa0092700:CDS |
| ATAATGAAGTTGAGTTGCAA+TGG | 0.608858 | 1_2:+75421606 | None:intergenic |
| TCATTGTTGTACGAGGCAGC+TGG | 0.614180 | 1_2:+75422134 | Msa0092700:CDS |
| ACGAGTTGGTTCAGTCGACT+CGG | 0.622355 | 1_2:+75422430 | Msa0092700:CDS |
| CAGGGCAACTGATCCACTCA+AGG | 0.625744 | 1_2:-75421680 | None:intergenic |
| GGGTGTCGTGTGCTCCGCAA+AGG | 0.627575 | 1_2:+75421627 | Msa0092700:CDS |
| ATTGGTGAATCCCACATATG+GGG | 0.640018 | 1_2:+75422160 | Msa0092700:CDS |
| TTTGATTGGTAGCATTGGTG+AGG | 0.643249 | 1_2:-75421767 | None:intergenic |
| AAATTGGGGAGACTTCATCA+AGG | 0.644743 | 1_2:+75422492 | Msa0092700:CDS |
| AATTGGGGAGACTTCATCAA+GGG | 0.644822 | 1_2:+75422493 | Msa0092700:CDS |
| AATCAAAATCATAATCCACC+AGG | 0.664735 | 1_2:+75421783 | Msa0092700:CDS |
| TCAGTTGCCCTGAATCCCAA+GGG | 0.669183 | 1_2:+75421691 | Msa0092700:CDS |
| GAGTCGACTGAACCAACTCG+TGG | 0.679210 | 1_2:-75422428 | None:intergenic |
| AACCTATGATATACGCCATG+TGG | 0.679816 | 1_2:+75422334 | Msa0092700:CDS |
| AAATTTGGCAAGGAAGAGGG+TGG | 0.680062 | 1_2:-75421718 | None:intergenic |
| GTTTAAATCATTGTTGTACG+AGG | 0.684324 | 1_2:+75422127 | Msa0092700:CDS |
| TGTGGCAAAAGGTACCAATG+TGG | 0.731996 | 1_2:+75422352 | Msa0092700:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTAATTCATGAATAATTGA+TGG | + | chr1_2:75421837-75421856 | Msa0092700:intron | 20.0% |
| !!! | GTTTAATTTATGATCCATAA+CGG | - | chr1_2:75421994-75422013 | None:intergenic | 20.0% |
| !!! | GAATCTATGAAAAGATTTTA+TGG | - | chr1_2:75422035-75422054 | None:intergenic | 20.0% |
| !! | ACTAATTCATGAATAATTGA+TGG | + | chr1_2:75421837-75421856 | Msa0092700:intron | 20.0% |
| !!! | GTTTAATTTATGATCCATAA+CGG | - | chr1_2:75421994-75422013 | None:intergenic | 20.0% |
| !!! | GAATCTATGAAAAGATTTTA+TGG | - | chr1_2:75422035-75422054 | None:intergenic | 20.0% |
| ! | ATTCATGAATAATTGATGGA+TGG | + | chr1_2:75421841-75421860 | Msa0092700:intron | 25.0% |
| !! | ACAGTTTTACAATGATTGAT+GGG | + | chr1_2:75422264-75422283 | Msa0092700:CDS | 25.0% |
| ! | ATTCATGAATAATTGATGGA+TGG | + | chr1_2:75421841-75421860 | Msa0092700:intron | 25.0% |
| !! | ACAGTTTTACAATGATTGAT+GGG | + | chr1_2:75422264-75422283 | Msa0092700:CDS | 25.0% |
| ATAAAATTTGGCAAGGAAGA+GGG | - | chr1_2:75421724-75421743 | None:intergenic | 30.0% | |
| !!! | ATGATTTTGATTGGTAGCAT+TGG | - | chr1_2:75421775-75421794 | None:intergenic | 30.0% |
| !!! | TGGTGGATTATGATTTTGAT+TGG | - | chr1_2:75421784-75421803 | None:intergenic | 30.0% |
| AATCAAAATCATAATCCACC+AGG | + | chr1_2:75421783-75421802 | Msa0092700:CDS | 30.0% | |
| ! | CAATTTAAAACCATGATGGA+TGG | - | chr1_2:75421885-75421904 | None:intergenic | 30.0% |
| !!! | TCCATCATGGTTTTAAATTG+TGG | + | chr1_2:75421885-75421904 | Msa0092700:intron | 30.0% |
| ! | ACCACAATTTAAAACCATGA+TGG | - | chr1_2:75421889-75421908 | None:intergenic | 30.0% |
| TAAAAAAGTTTGTCGTGTAG+CGG | - | chr1_2:75421926-75421945 | None:intergenic | 30.0% | |
| ATGGAACATAAATGAGACAT+AGG | - | chr1_2:75422016-75422035 | None:intergenic | 30.0% | |
| GTTTAAATCATTGTTGTACG+AGG | + | chr1_2:75422127-75422146 | Msa0092700:CDS | 30.0% | |
| ! | GACAGTTTTACAATGATTGA+TGG | + | chr1_2:75422263-75422282 | Msa0092700:CDS | 30.0% |
| AAAACTCAATTCAAAAGAGC+TGG | + | chr1_2:75422386-75422405 | Msa0092700:CDS | 30.0% | |
| AAACTCAATTCAAAAGAGCT+GGG | + | chr1_2:75422387-75422406 | Msa0092700:CDS | 30.0% | |
| CATGTTGGTATTCTTCAAAA+GGG | - | chr1_2:75422471-75422490 | None:intergenic | 30.0% | |
| AAGAATACCAACATGGAAAT+TGG | + | chr1_2:75422476-75422495 | Msa0092700:CDS | 30.0% | |
| AGAATACCAACATGGAAATT+GGG | + | chr1_2:75422477-75422496 | Msa0092700:CDS | 30.0% | |
| TTTGATTGCCAATCAACTAA+GGG | + | chr1_2:75422578-75422597 | Msa0092700:CDS | 30.0% | |
| ATAAAATTTGGCAAGGAAGA+GGG | - | chr1_2:75421724-75421743 | None:intergenic | 30.0% | |
| !!! | ATGATTTTGATTGGTAGCAT+TGG | - | chr1_2:75421775-75421794 | None:intergenic | 30.0% |
| !!! | TGGTGGATTATGATTTTGAT+TGG | - | chr1_2:75421784-75421803 | None:intergenic | 30.0% |
| AATCAAAATCATAATCCACC+AGG | + | chr1_2:75421783-75421802 | Msa0092700:CDS | 30.0% | |
| ! | CAATTTAAAACCATGATGGA+TGG | - | chr1_2:75421885-75421904 | None:intergenic | 30.0% |
| !!! | TCCATCATGGTTTTAAATTG+TGG | + | chr1_2:75421885-75421904 | Msa0092700:intron | 30.0% |
| ! | ACCACAATTTAAAACCATGA+TGG | - | chr1_2:75421889-75421908 | None:intergenic | 30.0% |
| TAAAAAAGTTTGTCGTGTAG+CGG | - | chr1_2:75421926-75421945 | None:intergenic | 30.0% | |
| ATGGAACATAAATGAGACAT+AGG | - | chr1_2:75422016-75422035 | None:intergenic | 30.0% | |
| GTTTAAATCATTGTTGTACG+AGG | + | chr1_2:75422127-75422146 | Msa0092700:CDS | 30.0% | |
| ! | GACAGTTTTACAATGATTGA+TGG | + | chr1_2:75422263-75422282 | Msa0092700:CDS | 30.0% |
| AAAACTCAATTCAAAAGAGC+TGG | + | chr1_2:75422386-75422405 | Msa0092700:CDS | 30.0% | |
| AAACTCAATTCAAAAGAGCT+GGG | + | chr1_2:75422387-75422406 | Msa0092700:CDS | 30.0% | |
| CATGTTGGTATTCTTCAAAA+GGG | - | chr1_2:75422471-75422490 | None:intergenic | 30.0% | |
| AAGAATACCAACATGGAAAT+TGG | + | chr1_2:75422476-75422495 | Msa0092700:CDS | 30.0% | |
| AGAATACCAACATGGAAATT+GGG | + | chr1_2:75422477-75422496 | Msa0092700:CDS | 30.0% | |
| TTTGATTGCCAATCAACTAA+GGG | + | chr1_2:75422578-75422597 | Msa0092700:CDS | 30.0% | |
| AATCATCACTACAACCTTTG+CGG | - | chr1_2:75421644-75421663 | None:intergenic | 35.0% | |
| CATAAAATTTGGCAAGGAAG+AGG | - | chr1_2:75421725-75421744 | None:intergenic | 35.0% | |
| ! | CTCTTCCTTGCCAAATTTTA+TGG | + | chr1_2:75421723-75421742 | Msa0092700:CDS | 35.0% |
| ATCAATGATTCCATCCATCA+TGG | + | chr1_2:75421872-75421891 | Msa0092700:intron | 35.0% | |
| TATGATCCATAACGGTATTG+CGG | - | chr1_2:75421986-75422005 | None:intergenic | 35.0% | |
| ! | TGGCGTATATCATAGGTTTT+GGG | - | chr1_2:75422332-75422351 | None:intergenic | 35.0% |
| ! | ATGGCGTATATCATAGGTTT+TGG | - | chr1_2:75422333-75422352 | None:intergenic | 35.0% |
| CCATGTTGGTATTCTTCAAA+AGG | - | chr1_2:75422472-75422491 | None:intergenic | 35.0% | |
| !! | CCTTTTGAAGAATACCAACA+TGG | + | chr1_2:75422469-75422488 | Msa0092700:CDS | 35.0% |
| GAATACCAACATGGAAATTG+GGG | + | chr1_2:75422478-75422497 | Msa0092700:CDS | 35.0% | |
| TGCTGAGAATCAAGTGAATT+TGG | + | chr1_2:75422541-75422560 | Msa0092700:CDS | 35.0% | |
| CTTTGATTGCCAATCAACTA+AGG | + | chr1_2:75422577-75422596 | Msa0092700:CDS | 35.0% | |
| ! | TTTTCTTGCCCTTAGTTGAT+TGG | - | chr1_2:75422589-75422608 | None:intergenic | 35.0% |
| AATCATCACTACAACCTTTG+CGG | - | chr1_2:75421644-75421663 | None:intergenic | 35.0% | |
| CATAAAATTTGGCAAGGAAG+AGG | - | chr1_2:75421725-75421744 | None:intergenic | 35.0% | |
| ! | CTCTTCCTTGCCAAATTTTA+TGG | + | chr1_2:75421723-75421742 | Msa0092700:CDS | 35.0% |
| ATCAATGATTCCATCCATCA+TGG | + | chr1_2:75421872-75421891 | Msa0092700:intron | 35.0% | |
| TATGATCCATAACGGTATTG+CGG | - | chr1_2:75421986-75422005 | None:intergenic | 35.0% | |
| ! | TGGCGTATATCATAGGTTTT+GGG | - | chr1_2:75422332-75422351 | None:intergenic | 35.0% |
| ! | ATGGCGTATATCATAGGTTT+TGG | - | chr1_2:75422333-75422352 | None:intergenic | 35.0% |
| CCATGTTGGTATTCTTCAAA+AGG | - | chr1_2:75422472-75422491 | None:intergenic | 35.0% | |
| !! | CCTTTTGAAGAATACCAACA+TGG | + | chr1_2:75422469-75422488 | Msa0092700:CDS | 35.0% |
| GAATACCAACATGGAAATTG+GGG | + | chr1_2:75422478-75422497 | Msa0092700:CDS | 35.0% | |
| TGCTGAGAATCAAGTGAATT+TGG | + | chr1_2:75422541-75422560 | Msa0092700:CDS | 35.0% | |
| CTTTGATTGCCAATCAACTA+AGG | + | chr1_2:75422577-75422596 | Msa0092700:CDS | 35.0% | |
| ! | TTTTCTTGCCCTTAGTTGAT+TGG | - | chr1_2:75422589-75422608 | None:intergenic | 35.0% |
| TTCGGCCATAAAATTTGGCA+AGG | - | chr1_2:75421731-75421750 | None:intergenic | 40.0% | |
| !! | TTTGATTGGTAGCATTGGTG+AGG | - | chr1_2:75421770-75421789 | None:intergenic | 40.0% |
| !! | GTGACCAACTTAAGTTGATG+CGG | + | chr1_2:75421960-75421979 | Msa0092700:intron | 40.0% |
| AGATTGGTGAATCCCACATA+TGG | + | chr1_2:75422158-75422177 | Msa0092700:CDS | 40.0% | |
| GATTGGTGAATCCCACATAT+GGG | + | chr1_2:75422159-75422178 | Msa0092700:CDS | 40.0% | |
| ATTGGTGAATCCCACATATG+GGG | + | chr1_2:75422160-75422179 | Msa0092700:CDS | 40.0% | |
| !!! | GCTTATTTTGGACAGCGAAT+TGG | + | chr1_2:75422189-75422208 | Msa0092700:CDS | 40.0% |
| ! | GGCGTATATCATAGGTTTTG+GGG | - | chr1_2:75422331-75422350 | None:intergenic | 40.0% |
| AACCTATGATATACGCCATG+TGG | + | chr1_2:75422334-75422353 | Msa0092700:CDS | 40.0% | |
| GTACCAATGTGGACATCAAA+GGG | + | chr1_2:75422363-75422382 | Msa0092700:CDS | 40.0% | |
| TTTCCCTTTGATGTCCACAT+TGG | - | chr1_2:75422369-75422388 | None:intergenic | 40.0% | |
| AAATTGGGGAGACTTCATCA+AGG | + | chr1_2:75422492-75422511 | Msa0092700:CDS | 40.0% | |
| AATTGGGGAGACTTCATCAA+GGG | + | chr1_2:75422493-75422512 | Msa0092700:CDS | 40.0% | |
| ! | GTGAATTTGGAACTCACTCT+TGG | + | chr1_2:75422554-75422573 | Msa0092700:CDS | 40.0% |
| TTCGGCCATAAAATTTGGCA+AGG | - | chr1_2:75421731-75421750 | None:intergenic | 40.0% | |
| !! | TTTGATTGGTAGCATTGGTG+AGG | - | chr1_2:75421770-75421789 | None:intergenic | 40.0% |
| !! | GTGACCAACTTAAGTTGATG+CGG | + | chr1_2:75421960-75421979 | Msa0092700:intron | 40.0% |
| AGATTGGTGAATCCCACATA+TGG | + | chr1_2:75422158-75422177 | Msa0092700:CDS | 40.0% | |
| GATTGGTGAATCCCACATAT+GGG | + | chr1_2:75422159-75422178 | Msa0092700:CDS | 40.0% | |
| ATTGGTGAATCCCACATATG+GGG | + | chr1_2:75422160-75422179 | Msa0092700:CDS | 40.0% | |
| !!! | GCTTATTTTGGACAGCGAAT+TGG | + | chr1_2:75422189-75422208 | Msa0092700:CDS | 40.0% |
| ! | GGCGTATATCATAGGTTTTG+GGG | - | chr1_2:75422331-75422350 | None:intergenic | 40.0% |
| AACCTATGATATACGCCATG+TGG | + | chr1_2:75422334-75422353 | Msa0092700:CDS | 40.0% | |
| GTACCAATGTGGACATCAAA+GGG | + | chr1_2:75422363-75422382 | Msa0092700:CDS | 40.0% | |
| TTTCCCTTTGATGTCCACAT+TGG | - | chr1_2:75422369-75422388 | None:intergenic | 40.0% | |
| AAATTGGGGAGACTTCATCA+AGG | + | chr1_2:75422492-75422511 | Msa0092700:CDS | 40.0% | |
| AATTGGGGAGACTTCATCAA+GGG | + | chr1_2:75422493-75422512 | Msa0092700:CDS | 40.0% | |
| ! | GTGAATTTGGAACTCACTCT+TGG | + | chr1_2:75422554-75422573 | Msa0092700:CDS | 40.0% |
| AAATTTGGCAAGGAAGAGGG+TGG | - | chr1_2:75421721-75421740 | None:intergenic | 45.0% | |
| ! | GCCAAATTTTATGGCCGAAC+CGG | + | chr1_2:75421732-75421751 | Msa0092700:CDS | 45.0% |
| !! | ACCGGTTCGGCCATAAAATT+TGG | - | chr1_2:75421736-75421755 | None:intergenic | 45.0% |
| AGTGAACATAGCTAGCTACC+TGG | - | chr1_2:75421804-75421823 | None:intergenic | 45.0% | |
| ! | ATTGATGGGCAGACATCATC+AGG | + | chr1_2:75422278-75422297 | Msa0092700:CDS | 45.0% |
| TGCCACATGGCGTATATCAT+AGG | - | chr1_2:75422339-75422358 | None:intergenic | 45.0% | |
| GATATACGCCATGTGGCAAA+AGG | + | chr1_2:75422341-75422360 | Msa0092700:CDS | 45.0% | |
| ! | CATTGGTACCTTTTGCCACA+TGG | - | chr1_2:75422352-75422371 | None:intergenic | 45.0% |
| !! | TGTGGCAAAAGGTACCAATG+TGG | + | chr1_2:75422352-75422371 | Msa0092700:CDS | 45.0% |
| GGTACCAATGTGGACATCAA+AGG | + | chr1_2:75422362-75422381 | Msa0092700:CDS | 45.0% | |
| AGTCTCCCCAATTTCCATGT+TGG | - | chr1_2:75422486-75422505 | None:intergenic | 45.0% | |
| AAATTTGGCAAGGAAGAGGG+TGG | - | chr1_2:75421721-75421740 | None:intergenic | 45.0% | |
| ! | GCCAAATTTTATGGCCGAAC+CGG | + | chr1_2:75421732-75421751 | Msa0092700:CDS | 45.0% |
| !! | ACCGGTTCGGCCATAAAATT+TGG | - | chr1_2:75421736-75421755 | None:intergenic | 45.0% |
| AGTGAACATAGCTAGCTACC+TGG | - | chr1_2:75421804-75421823 | None:intergenic | 45.0% | |
| ! | ATTGATGGGCAGACATCATC+AGG | + | chr1_2:75422278-75422297 | Msa0092700:CDS | 45.0% |
| TGCCACATGGCGTATATCAT+AGG | - | chr1_2:75422339-75422358 | None:intergenic | 45.0% | |
| GATATACGCCATGTGGCAAA+AGG | + | chr1_2:75422341-75422360 | Msa0092700:CDS | 45.0% | |
| ! | CATTGGTACCTTTTGCCACA+TGG | - | chr1_2:75422352-75422371 | None:intergenic | 45.0% |
| !! | TGTGGCAAAAGGTACCAATG+TGG | + | chr1_2:75422352-75422371 | Msa0092700:CDS | 45.0% |
| GGTACCAATGTGGACATCAA+AGG | + | chr1_2:75422362-75422381 | Msa0092700:CDS | 45.0% | |
| AGTCTCCCCAATTTCCATGT+TGG | - | chr1_2:75422486-75422505 | None:intergenic | 45.0% | |
| CAACTGATCCACTCAAGGCA+GGG | - | chr1_2:75421678-75421697 | None:intergenic | 50.0% | |
| ATCAGTTGCCCTGAATCCCA+AGG | + | chr1_2:75421690-75421709 | Msa0092700:CDS | 50.0% | |
| TCAGTTGCCCTGAATCCCAA+GGG | + | chr1_2:75421691-75421710 | Msa0092700:CDS | 50.0% | |
| GGAGATTGAGCAAACCGGTT+CGG | - | chr1_2:75421749-75421768 | None:intergenic | 50.0% | |
| GGTGAGGAGATTGAGCAAAC+CGG | - | chr1_2:75421754-75421773 | None:intergenic | 50.0% | |
| GAACATAGCTAGCTACCTGG+TGG | - | chr1_2:75421801-75421820 | None:intergenic | 50.0% | |
| TCATTGTTGTACGAGGCAGC+TGG | + | chr1_2:75422134-75422153 | Msa0092700:CDS | 50.0% | |
| !! | ATGGGGCGCTTGGCTTATTT+TGG | + | chr1_2:75422177-75422196 | Msa0092700:CDS | 50.0% |
| ACTGAACCAACTCGTGGCTT+GGG | - | chr1_2:75422425-75422444 | None:intergenic | 50.0% | |
| !! | ACGAGTTGGTTCAGTCGACT+CGG | + | chr1_2:75422430-75422449 | Msa0092700:CDS | 50.0% |
| CAACTGATCCACTCAAGGCA+GGG | - | chr1_2:75421678-75421697 | None:intergenic | 50.0% | |
| ATCAGTTGCCCTGAATCCCA+AGG | + | chr1_2:75421690-75421709 | Msa0092700:CDS | 50.0% | |
| TCAGTTGCCCTGAATCCCAA+GGG | + | chr1_2:75421691-75421710 | Msa0092700:CDS | 50.0% | |
| GGAGATTGAGCAAACCGGTT+CGG | - | chr1_2:75421749-75421768 | None:intergenic | 50.0% | |
| GGTGAGGAGATTGAGCAAAC+CGG | - | chr1_2:75421754-75421773 | None:intergenic | 50.0% | |
| GAACATAGCTAGCTACCTGG+TGG | - | chr1_2:75421801-75421820 | None:intergenic | 50.0% | |
| TCATTGTTGTACGAGGCAGC+TGG | + | chr1_2:75422134-75422153 | Msa0092700:CDS | 50.0% | |
| !! | ATGGGGCGCTTGGCTTATTT+TGG | + | chr1_2:75422177-75422196 | Msa0092700:CDS | 50.0% |
| ACTGAACCAACTCGTGGCTT+GGG | - | chr1_2:75422425-75422444 | None:intergenic | 50.0% | |
| !! | ACGAGTTGGTTCAGTCGACT+CGG | + | chr1_2:75422430-75422449 | Msa0092700:CDS | 50.0% |
| TCATCAAGCCCTGCCTTGAG+TGG | + | chr1_2:75421667-75421686 | Msa0092700:CDS | 55.0% | |
| GCAACTGATCCACTCAAGGC+AGG | - | chr1_2:75421679-75421698 | None:intergenic | 55.0% | |
| CAGGGCAACTGATCCACTCA+AGG | - | chr1_2:75421683-75421702 | None:intergenic | 55.0% | |
| TGGCATGCCCTTGGGATTCA+GGG | - | chr1_2:75421701-75421720 | None:intergenic | 55.0% | |
| GCGGCCGCATCAACTTAAGT+TGG | - | chr1_2:75421967-75421986 | None:intergenic | 55.0% | |
| ATGCGGCCGCAATACCGTTA+TGG | + | chr1_2:75421977-75421996 | Msa0092700:intron | 55.0% | |
| GTACGAGGCAGCTGGTAGAT+TGG | + | chr1_2:75422142-75422161 | Msa0092700:CDS | 55.0% | |
| ! | AATCCCACATATGGGGCGCT+TGG | + | chr1_2:75422167-75422186 | Msa0092700:CDS | 55.0% |
| AAGCCAAGCGCCCCATATGT+GGG | - | chr1_2:75422173-75422192 | None:intergenic | 55.0% | |
| TAAGCCAAGCGCCCCATATG+TGG | - | chr1_2:75422174-75422193 | None:intergenic | 55.0% | |
| ! | GCAGTTGAAGCTGTGCTGAC+TGG | + | chr1_2:75422227-75422246 | Msa0092700:CDS | 55.0% |
| GACTGAACCAACTCGTGGCT+TGG | - | chr1_2:75422426-75422445 | None:intergenic | 55.0% | |
| GAGTCGACTGAACCAACTCG+TGG | - | chr1_2:75422431-75422450 | None:intergenic | 55.0% | |
| TCATCAAGCCCTGCCTTGAG+TGG | + | chr1_2:75421667-75421686 | Msa0092700:CDS | 55.0% | |
| GCAACTGATCCACTCAAGGC+AGG | - | chr1_2:75421679-75421698 | None:intergenic | 55.0% | |
| CAGGGCAACTGATCCACTCA+AGG | - | chr1_2:75421683-75421702 | None:intergenic | 55.0% | |
| TGGCATGCCCTTGGGATTCA+GGG | - | chr1_2:75421701-75421720 | None:intergenic | 55.0% | |
| GCGGCCGCATCAACTTAAGT+TGG | - | chr1_2:75421967-75421986 | None:intergenic | 55.0% | |
| ATGCGGCCGCAATACCGTTA+TGG | + | chr1_2:75421977-75421996 | Msa0092700:intron | 55.0% | |
| GTACGAGGCAGCTGGTAGAT+TGG | + | chr1_2:75422142-75422161 | Msa0092700:CDS | 55.0% | |
| ! | AATCCCACATATGGGGCGCT+TGG | + | chr1_2:75422167-75422186 | Msa0092700:CDS | 55.0% |
| AAGCCAAGCGCCCCATATGT+GGG | - | chr1_2:75422173-75422192 | None:intergenic | 55.0% | |
| TAAGCCAAGCGCCCCATATG+TGG | - | chr1_2:75422174-75422193 | None:intergenic | 55.0% | |
| ! | GCAGTTGAAGCTGTGCTGAC+TGG | + | chr1_2:75422227-75422246 | Msa0092700:CDS | 55.0% |
| GACTGAACCAACTCGTGGCT+TGG | - | chr1_2:75422426-75422445 | None:intergenic | 55.0% | |
| GAGTCGACTGAACCAACTCG+TGG | - | chr1_2:75422431-75422450 | None:intergenic | 55.0% | |
| GTGGCATGCCCTTGGGATTC+AGG | - | chr1_2:75421702-75421721 | None:intergenic | 60.0% | |
| GAAGAGGGTGGCATGCCCTT+GGG | - | chr1_2:75421709-75421728 | None:intergenic | 60.0% | |
| CTGAAGCCCAAGCCACGAGT+TGG | + | chr1_2:75422416-75422435 | Msa0092700:CDS | 60.0% | |
| GTGGCATGCCCTTGGGATTC+AGG | - | chr1_2:75421702-75421721 | None:intergenic | 60.0% | |
| GAAGAGGGTGGCATGCCCTT+GGG | - | chr1_2:75421709-75421728 | None:intergenic | 60.0% | |
| CTGAAGCCCAAGCCACGAGT+TGG | + | chr1_2:75422416-75422435 | Msa0092700:CDS | 60.0% | |
| ! | GGGTGTCGTGTGCTCCGCAA+AGG | + | chr1_2:75421627-75421646 | Msa0092700:CDS | 65.0% |
| GGAAGAGGGTGGCATGCCCT+TGG | - | chr1_2:75421710-75421729 | None:intergenic | 65.0% | |
| ! | GGGTGTCGTGTGCTCCGCAA+AGG | + | chr1_2:75421627-75421646 | Msa0092700:CDS | 65.0% |
| GGAAGAGGGTGGCATGCCCT+TGG | - | chr1_2:75421710-75421729 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 75421609 | 75422622 | 75421609 | ID=Msa0092700;Name=Msa0092700 |
| chr1_2 | mRNA | 75421609 | 75422622 | 75421609 | ID=Msa0092700-mRNA-1;Parent=Msa0092700;Name=Msa0092700-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|2|0|231 |
| chr1_2 | exon | 75421609 | 75421804 | 75421609 | ID=Msa0092700-mRNA-1:exon:26540;Parent=Msa0092700-mRNA-1 |
| chr1_2 | exon | 75422123 | 75422622 | 75422123 | ID=Msa0092700-mRNA-1:exon:26541;Parent=Msa0092700-mRNA-1 |
| chr1_2 | CDS | 75421609 | 75421804 | 75421609 | ID=Msa0092700-mRNA-1:cds;Parent=Msa0092700-mRNA-1 |
| chr1_2 | CDS | 75422123 | 75422622 | 75422123 | ID=Msa0092700-mRNA-1:cds;Parent=Msa0092700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
