Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0093350 | XP_024632959.1 | 68.750 | 256 | 44 | 5 | 1 | 247 | 1 | 229 | 1.53e-93 | 299 |
| Msa0093350 | XP_024632959.1 | 80.878 | 319 | 45 | 5 | 181 | 485 | 1 | 317 | 1.46e-168 | 490 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0093350 | sp|Q9NYW8|RBAK_HUMAN | 27.358 | 424 | 243 | 18 | 12 | 398 | 250 | 645 | 3.78e-12 | 72.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0093350 | A0A396JGH2 | 68.750 | 256 | 44 | 5 | 1 | 247 | 1 | 229 | 7.29e-94 | 299 |
| Msa0093350 | A0A396JGH2 | 80.878 | 319 | 45 | 5 | 181 | 485 | 1 | 317 | 6.98e-169 | 490 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0093350 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0093350 | MtrunA17_Chr2g0331601 | 80.878 | 319 | 45 | 5 | 181 | 485 | 1 | 317 | 1.34e-172 | 490 |
| Msa0093350 | MtrunA17_Chr2g0331601 | 68.750 | 256 | 44 | 5 | 1 | 247 | 1 | 229 | 1.40e-97 | 299 |
| Msa0093350 | MtrunA17_Chr6g0481281 | 44.726 | 237 | 80 | 5 | 281 | 476 | 30 | 256 | 5.13e-52 | 179 |
| Msa0093350 | MtrunA17_Chr6g0481281 | 62.319 | 69 | 21 | 2 | 11 | 75 | 27 | 94 | 1.50e-16 | 80.5 |
| Msa0093350 | MtrunA17_Chr6g0481281 | 62.319 | 69 | 21 | 2 | 195 | 258 | 30 | 98 | 2.82e-16 | 79.7 |
| Msa0093350 | MtrunA17_Chr6g0481281 | 60.870 | 69 | 22 | 2 | 109 | 172 | 30 | 98 | 4.32e-16 | 79.3 |
| Msa0093350 | MtrunA17_Chr5g0448221 | 31.429 | 175 | 80 | 5 | 302 | 456 | 55 | 209 | 2.35e-13 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0093350 | AT5G56200.1 | 38.542 | 96 | 45 | 2 | 311 | 406 | 79 | 160 | 2.26e-12 | 69.7 |
| Msa0093350 | AT2G26940.1 | 36.697 | 109 | 64 | 1 | 311 | 414 | 49 | 157 | 1.50e-11 | 65.9 |
Find 101 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATCTCTCTTCTGCCATTT+TGG | 0.136557 | 1_2:-76121079 | Msa0093340:intron |
| ATCATGAGAATCATCATAAT+TGG | 0.176457 | 1_2:-76122778 | Msa0093340:five_prime_UTR |
| ATGATTTGAGGAATACAATT+TGG | 0.193184 | 1_2:+76122796 | Msa0093350:CDS |
| CAATACAAGGTAGTTATAAT+AGG | 0.224337 | 1_2:+76120060 | Msa0093350:CDS |
| CAATACAAGGTAGTAATAAT+AGG | 0.229853 | 1_2:+76120858 | Msa0093350:CDS |
| GAATACAATTTGGAAAATTT+AGG | 0.278577 | 1_2:+76122806 | Msa0093350:CDS |
| TGATAATACTATGGCTAGTT+TGG | 0.303196 | 1_2:+76120328 | Msa0093350:CDS |
| TGATAATACTATGGCTAGTT+TGG | 0.303196 | 1_2:+76120586 | Msa0093350:CDS |
| GTGATTTATCTTTGCCAAAA+TGG | 0.304193 | 1_2:+76121065 | Msa0093350:CDS |
| GTCCTTTAAAATCTCTATTC+CGG | 0.308881 | 1_2:-76121000 | Msa0093340:intron |
| CATGATGAAGTTTCTGCTTA+AGG | 0.329845 | 1_2:-76120292 | Msa0093340:intron |
| CATGATGAAGTTTCTGCTTA+AGG | 0.329845 | 1_2:-76120550 | Msa0093340:intron |
| ACAAAAGGTTGATAATACTA+TGG | 0.403285 | 1_2:+76120319 | Msa0093350:CDS |
| ACAAAAGGTTGATAATACTA+TGG | 0.403285 | 1_2:+76120577 | Msa0093350:CDS |
| GTGACCATACAAAGCATTCA+TGG | 0.407800 | 1_2:-76120966 | Msa0093340:intron |
| ATGATGATTCTCATGATTTG+AGG | 0.407886 | 1_2:+76122784 | Msa0093350:CDS |
| CCAACCATGAATGCTTTGTA+TGG | 0.410676 | 1_2:+76120962 | Msa0093350:CDS |
| AATACAAGGTAGTAATAATA+GGG | 0.421996 | 1_2:+76120859 | Msa0093350:CDS |
| GGGATTGCATAACAAATGAT+AGG | 0.426768 | 1_2:-76122757 | Msa0093340:five_prime_UTR |
| TTACTACCTTGTATTGAGAA+AGG | 0.427202 | 1_2:-76120851 | Msa0093340:intron |
| TACTACCTTGTATTGAGAAA+GGG | 0.428907 | 1_2:-76120850 | Msa0093340:intron |
| AATACAAGGTAGTTATAATA+GGG | 0.431054 | 1_2:+76120061 | Msa0093350:CDS |
| CACATCAGTGCAATGTTTGT+GGG | 0.435235 | 1_2:+76119937 | Msa0093350:CDS |
| ACACATCAGTGCAATGTTTG+TGG | 0.442286 | 1_2:+76120476 | Msa0093350:CDS |
| ACACATCAGTGCAATGTTTG+TGG | 0.442286 | 1_2:+76120734 | Msa0093350:CDS |
| TTTAGCAATGGAAAAGCATT+GGG | 0.444822 | 1_2:+76119966 | Msa0093350:CDS |
| TCACATCAGTGCAATGTTTG+TGG | 0.451639 | 1_2:+76119936 | Msa0093350:CDS |
| TTTAGTAACGGAAAAGCATT+GGG | 0.453684 | 1_2:+76120506 | Msa0093350:CDS |
| TTTAGTAACGGAAAAGCATT+GGG | 0.453684 | 1_2:+76120764 | Msa0093350:CDS |
| ATTCGGAAAAGAGGATGAAA+AGG | 0.459648 | 1_2:+76119850 | Msa0093350:CDS |
| TCATGAGAATCATCATAATT+GGG | 0.460956 | 1_2:-76122777 | Msa0093340:five_prime_UTR |
| TGAGAAAACCTATGAAGATT+CGG | 0.461549 | 1_2:+76119833 | Msa0093350:CDS |
| TTTAGCAACGGAAAAGCATT+GGG | 0.462037 | 1_2:+76120248 | Msa0093350:CDS |
| TGTGTTGGTGAAACATCAAA+TGG | 0.466991 | 1_2:+76121175 | Msa0093350:CDS |
| GTACATCACCGAGCAAGAAT+CGG | 0.468643 | 1_2:-76122710 | Msa0093340:five_prime_UTR |
| AGTCAGAAAAGAGGGTGAAA+AGG | 0.473192 | 1_2:+76120390 | Msa0093350:CDS |
| AGTCAGAAAAGAGGGTGAAA+AGG | 0.473192 | 1_2:+76120648 | Msa0093350:CDS |
| GATGATGAAGAAGAAATTGA+TGG | 0.474180 | 1_2:+76120899 | Msa0093350:CDS |
| AGAAGAGGTAGAAAGTGTAT+TGG | 0.483023 | 1_2:+76121100 | Msa0093350:CDS |
| ACACATCAATGCAATGTTTG+TGG | 0.483250 | 1_2:+76120218 | Msa0093350:CDS |
| AGTCTGAAAAGAGGATAAAG+AGG | 0.489348 | 1_2:+76120132 | Msa0093350:CDS |
| AGTGATAAGCAGCCAAAGAA+AGG | 0.491245 | 1_2:+76121235 | Msa0093350:CDS |
| TTTGATAAAGATAGTAAGCA+TGG | 0.491925 | 1_2:+76120089 | Msa0093350:CDS |
| AAGCAGCCAAAGAAAGGAAA+AGG | 0.495623 | 1_2:+76121241 | Msa0093350:CDS |
| ACTTCATCATGATTCACAAA+AGG | 0.507116 | 1_2:+76120304 | Msa0093350:CDS |
| ACTTCATCATGATTCACAAA+AGG | 0.507116 | 1_2:+76120562 | Msa0093350:CDS |
| ACTCAATCATCATCAACAAA+AGG | 0.509294 | 1_2:+76120820 | Msa0093350:CDS |
| AACTACCTTGTATTGAGAGA+GGG | 0.509993 | 1_2:-76120052 | Msa0093340:intron |
| CCTATGAAGATTCGGAAAAG+AGG | 0.512041 | 1_2:+76119841 | Msa0093350:CDS |
| ACTTAATCATCGTTCACAAA+AGG | 0.517591 | 1_2:+76120022 | Msa0093350:CDS |
| CATAAAGAAGATCAAGATGA+TGG | 0.521149 | 1_2:+76121043 | Msa0093350:CDS |
| GCTTAAGGAAGTGAGATCTT+CGG | 0.523012 | 1_2:-76120277 | Msa0093340:intron |
| GCTTAAGGAAGTGAGATCTT+CGG | 0.523012 | 1_2:-76120535 | Msa0093340:intron |
| GATGACCTCCGATTCTTGCT+CGG | 0.525863 | 1_2:+76122702 | Msa0093350:CDS |
| CAAACCCCTCTCTCAATACA+AGG | 0.526964 | 1_2:+76120047 | Msa0093350:CDS |
| TGGGAATGGCAAGAATGAGC+TGG | 0.528852 | 1_2:+76121195 | Msa0093350:CDS |
| TCTTAAGAAAGTGAGATCTC+CGG | 0.549197 | 1_2:-76119995 | Msa0093340:intron |
| TCTTAAGAAAGTGAGATCTC+CGG | 0.549197 | 1_2:-76120793 | Msa0093340:intron |
| CCCGTGAAGAGTCTGAAAAG+AGG | 0.549764 | 1_2:+76120123 | Msa0093350:CDS |
| GAAAAGCATTGGGTGGTCAC+CGG | 0.556634 | 1_2:+76119976 | Msa0093350:CDS |
| GAAAAGCATTGGGTGGTCAC+CGG | 0.560535 | 1_2:+76120774 | Msa0093350:CDS |
| ACTACCTTGTATTGAGAAAG+GGG | 0.563148 | 1_2:-76120849 | Msa0093340:intron |
| AAAACCCCTTTCTCAATACA+AGG | 0.568454 | 1_2:+76120845 | Msa0093350:CDS |
| CCATACAAAGCATTCATGGT+TGG | 0.569961 | 1_2:-76120962 | Msa0093340:intron |
| CTATGAAGAGTCAGAAAAGA+GGG | 0.570873 | 1_2:+76120382 | Msa0093350:CDS |
| CTATGAAGAGTCAGAAAAGA+GGG | 0.570873 | 1_2:+76120640 | Msa0093350:CDS |
| ATCTTCTTTATGATATTCAG+TGG | 0.577502 | 1_2:-76121032 | Msa0093340:intron |
| CCTATGAAGAGTCAGAAAAG+AGG | 0.578028 | 1_2:+76120381 | Msa0093350:CDS |
| CCTATGAAGAGTCAGAAAAG+AGG | 0.578028 | 1_2:+76120639 | Msa0093350:CDS |
| TCTTTATGATATTCAGTGGG+AGG | 0.578179 | 1_2:-76121028 | Msa0093340:intron |
| TGGCAGAAGAGAGATAGAAG+AGG | 0.582371 | 1_2:+76121085 | Msa0093350:CDS |
| AAGCGATGAAGATGATGCTA+AGG | 0.582770 | 1_2:+76120430 | Msa0093350:CDS |
| AAGCGATGAAGATGATGCTA+AGG | 0.582770 | 1_2:+76120688 | Msa0093350:CDS |
| GGGAATGGCAAGAATGAGCT+GGG | 0.589572 | 1_2:+76121196 | Msa0093350:CDS |
| TGAAGATGATGCTAAGGATG+AGG | 0.590398 | 1_2:+76120436 | Msa0093350:CDS |
| TGAAGATGATGCTAAGGATG+AGG | 0.590398 | 1_2:+76120694 | Msa0093350:CDS |
| ACTACCTTGTATTGAGAGAG+GGG | 0.593179 | 1_2:-76120051 | Msa0093340:intron |
| GTGTTGGTGAAACATCAAAT+GGG | 0.595282 | 1_2:+76121176 | Msa0093350:CDS |
| TAACTACCTTGTATTGAGAG+AGG | 0.601425 | 1_2:-76120053 | Msa0093340:intron |
| TCTTCTTTATGATATTCAGT+GGG | 0.603725 | 1_2:-76121031 | Msa0093340:intron |
| TAGTGATGAAGATGATGCTA+AGG | 0.613974 | 1_2:+76119890 | Msa0093350:CDS |
| AGCAATGGAAAAGCATTGGG+TGG | 0.615604 | 1_2:+76119969 | Msa0093350:CDS |
| AAGTGATGAAGATGATGCTA+AGG | 0.616457 | 1_2:+76120172 | Msa0093350:CDS |
| TTCTTGCTCGGTGATGTACA+CGG | 0.616714 | 1_2:+76122714 | Msa0093350:CDS |
| GCCGCTTAGTAGTGATAACA+AGG | 0.619641 | 1_2:+76122680 | Msa0093350:CDS |
| ATGGATAAAGATCATAAGCA+TGG | 0.623190 | 1_2:+76119807 | Msa0093350:CDS |
| ATGGTCACATGAGGACTCAC+CGG | 0.623316 | 1_2:+76120981 | Msa0093350:CDS |
| AGCAACGGAAAAGCATTGGG+TGG | 0.623901 | 1_2:+76120251 | Msa0093350:CDS |
| AGATCATAAGCATGATCATG+AGG | 0.630396 | 1_2:+76120355 | Msa0093350:CDS |
| AGATCATAAGCATGATCATG+AGG | 0.630396 | 1_2:+76120613 | Msa0093350:CDS |
| GGTGAAACATCAAATGGGAA+TGG | 0.636070 | 1_2:+76121181 | Msa0093350:CDS |
| TGAAGATGATGCTAAGGATG+AGG | 0.644459 | 1_2:+76119896 | Msa0093350:CDS |
| AGTAACGGAAAAGCATTGGG+TGG | 0.649033 | 1_2:+76120509 | Msa0093350:CDS |
| AGTAACGGAAAAGCATTGGG+TGG | 0.649033 | 1_2:+76120767 | Msa0093350:CDS |
| GTGTATTGGTAGTGTTGAGG+CGG | 0.666307 | 1_2:+76121114 | Msa0093350:CDS |
| CATCACCGAGCAAGAATCGG+AGG | 0.677430 | 1_2:-76122707 | Msa0093340:five_prime_UTR |
| AAAAGTTCTTGTCATAACGA+AGG | 0.694153 | 1_2:-76121153 | Msa0093340:intron |
| AAAGTGTATTGGTAGTGTTG+AGG | 0.694754 | 1_2:+76121111 | Msa0093350:CDS |
| TCCTTGTTATCACTACTAAG+CGG | 0.704406 | 1_2:-76122681 | Msa0093340:five_prime_UTR |
| ATGCTTTGTATGGTCACATG+AGG | 0.725028 | 1_2:+76120972 | Msa0093350:CDS |
| ATGCACTGTATGTAGAACGA+TGG | 0.762416 | 1_2:+76122640 | Msa0093350:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTATTTATAAGTTTGTTA+AGG | + | chr1_2:76121388-76121407 | Msa0093350:intron | 10.0% |
| !! | AATTACTAATTAAATCTTTA+TGG | + | chr1_2:76122312-76122331 | Msa0093350:intron | 10.0% |
| !! | TTACAAAAACTAAACTAATA+AGG | - | chr1_2:76121792-76121811 | Msa0093340:intron | 15.0% |
| !!! | TCTTTTTTAAAATAAATTGC+CGG | - | chr1_2:76122170-76122189 | Msa0093340:intron | 15.0% |
| !!! | GCTTTTAAAATTAAATAGAA+AGG | + | chr1_2:76122382-76122401 | Msa0093350:intron | 15.0% |
| !! | AATACAAGGTAGTTATAATA+GGG | + | chr1_2:76120061-76120080 | Msa0093350:CDS | 20.0% |
| !! | AATACAAGGTAGTAATAATA+GGG | + | chr1_2:76120859-76120878 | Msa0093350:CDS | 20.0% |
| !!! | TTGTTGATGTTTTATTTAGA+TGG | + | chr1_2:76121616-76121635 | Msa0093350:intron | 20.0% |
| !!! | TTTTTATCGATGTTTTTAAG+AGG | + | chr1_2:76121728-76121747 | Msa0093350:intron | 20.0% |
| !! | TTTGATATCCTTACAAAAAT+AGG | + | chr1_2:76122079-76122098 | Msa0093350:intron | 20.0% |
| !! | GGAGAAGTTATTATTAATAA+CGG | - | chr1_2:76122146-76122165 | Msa0093340:intron | 20.0% |
| !!! | AACAAGAGTTTTTTTTTTGT+TGG | + | chr1_2:76122193-76122212 | Msa0093350:intron | 20.0% |
| !!! | CTTTATTATTTTGATGAATC+TGG | - | chr1_2:76122544-76122563 | Msa0093340:CDS | 20.0% |
| !! | CAGATTCATCAAAATAATAA+AGG | + | chr1_2:76122542-76122561 | Msa0093350:intron | 20.0% |
| !! | AATAAAGGAAAAATGTCATT+TGG | + | chr1_2:76122557-76122576 | Msa0093350:intron | 20.0% |
| !! | GTTTGAAAAAAAAAACTAGT+TGG | - | chr1_2:76122602-76122621 | Msa0093340:five_prime_UTR | 20.0% |
| ! | CAATACAAGGTAGTTATAAT+AGG | + | chr1_2:76120060-76120079 | Msa0093350:CDS | 25.0% |
| ! | TTTGATAAAGATAGTAAGCA+TGG | + | chr1_2:76120089-76120108 | Msa0093350:CDS | 25.0% |
| !!! | ACAAAAGGTTGATAATACTA+TGG | + | chr1_2:76120319-76120338 | Msa0093350:CDS | 25.0% |
| !! | TGTGGAAAAACTTTTAGTAA+CGG | + | chr1_2:76120494-76120513 | Msa0093350:CDS | 25.0% |
| !!! | ACAAAAGGTTGATAATACTA+TGG | + | chr1_2:76120319-76120338 | Msa0093350:CDS | 25.0% |
| !! | TGTGGAAAAACTTTTAGTAA+CGG | + | chr1_2:76120494-76120513 | Msa0093350:CDS | 25.0% |
| ! | CAATACAAGGTAGTAATAAT+AGG | + | chr1_2:76120858-76120877 | Msa0093350:CDS | 25.0% |
| ! | TCTTCTTTATGATATTCAGT+GGG | - | chr1_2:76121034-76121053 | Msa0093340:intron | 25.0% |
| ! | ATCTTCTTTATGATATTCAG+TGG | - | chr1_2:76121035-76121054 | Msa0093340:intron | 25.0% |
| !! | AATAAACCTTTTCCTTTCTT+TGG | - | chr1_2:76121250-76121269 | Msa0093340:intron | 25.0% |
| !! | TAAGCTCTTTTTCTCAAAAT+AGG | + | chr1_2:76121494-76121513 | Msa0093350:intron | 25.0% |
| ! | AATATATTGCATTATGACGT+GGG | - | chr1_2:76121535-76121554 | Msa0093340:intron | 25.0% |
| ! | TAATATATTGCATTATGACG+TGG | - | chr1_2:76121536-76121555 | Msa0093340:intron | 25.0% |
| ! | ATAGTGAAGAGAAAAAAAGT+GGG | - | chr1_2:76121831-76121850 | Msa0093340:intron | 25.0% |
| !!! | ATGCACATATTTGTTTTCTT+AGG | + | chr1_2:76121906-76121925 | Msa0093350:intron | 25.0% |
| ! | CAAACAACAATAATTCATCT+TGG | - | chr1_2:76122063-76122082 | Msa0093340:intron | 25.0% |
| !!! | TTGTTGTTCCTATTTTTGTA+AGG | - | chr1_2:76122090-76122109 | Msa0093340:intron | 25.0% |
| ! | AAAAATAGGAACAACAAGAA+AGG | + | chr1_2:76122093-76122112 | Msa0093350:intron | 25.0% |
| ! | ATTAATAATAACTTCTCCTC+CGG | + | chr1_2:76122148-76122167 | Msa0093350:intron | 25.0% |
| !!! | TTTTTAAAATAAATTGCCGG+AGG | - | chr1_2:76122167-76122186 | Msa0093340:intron | 25.0% |
| !! | TTTTTGTTGGAATACAACTT+TGG | + | chr1_2:76122206-76122225 | Msa0093350:intron | 25.0% |
| ! | TCAAACAATAGAGTATATTG+TGG | + | chr1_2:76122616-76122635 | Msa0093350:intron | 25.0% |
| ! | TCATGAGAATCATCATAATT+GGG | - | chr1_2:76122780-76122799 | Msa0093340:five_prime_UTR | 25.0% |
| ! | ATCATGAGAATCATCATAAT+TGG | - | chr1_2:76122781-76122800 | Msa0093340:five_prime_UTR | 25.0% |
| ! | ATGATTTGAGGAATACAATT+TGG | + | chr1_2:76122796-76122815 | Msa0093350:CDS | 25.0% |
| ATGGATAAAGATCATAAGCA+TGG | + | chr1_2:76119807-76119826 | Msa0093350:CDS | 30.0% | |
| TGAGAAAACCTATGAAGATT+CGG | + | chr1_2:76119833-76119852 | Msa0093350:CDS | 30.0% | |
| !! | TTTTAGCAATGGAAAAGCAT+TGG | + | chr1_2:76119965-76119984 | Msa0093350:CDS | 30.0% |
| !! | TTTAGCAATGGAAAAGCATT+GGG | + | chr1_2:76119966-76119985 | Msa0093350:CDS | 30.0% |
| ACTTAATCATCGTTCACAAA+AGG | + | chr1_2:76120022-76120041 | Msa0093350:CDS | 30.0% | |
| ACTTCATCATGATTCACAAA+AGG | + | chr1_2:76120304-76120323 | Msa0093350:CDS | 30.0% | |
| ! | TGATAATACTATGGCTAGTT+TGG | + | chr1_2:76120328-76120347 | Msa0093350:CDS | 30.0% |
| !! | TTTTAGTAACGGAAAAGCAT+TGG | + | chr1_2:76120505-76120524 | Msa0093350:CDS | 30.0% |
| !! | TTTAGTAACGGAAAAGCATT+GGG | + | chr1_2:76120506-76120525 | Msa0093350:CDS | 30.0% |
| ACTTCATCATGATTCACAAA+AGG | + | chr1_2:76120304-76120323 | Msa0093350:CDS | 30.0% | |
| ! | TGATAATACTATGGCTAGTT+TGG | + | chr1_2:76120328-76120347 | Msa0093350:CDS | 30.0% |
| !! | TTTTAGTAACGGAAAAGCAT+TGG | + | chr1_2:76120505-76120524 | Msa0093350:CDS | 30.0% |
| !! | TTTAGTAACGGAAAAGCATT+GGG | + | chr1_2:76120506-76120525 | Msa0093350:CDS | 30.0% |
| ACTCAATCATCATCAACAAA+AGG | + | chr1_2:76120820-76120839 | Msa0093350:CDS | 30.0% | |
| TACTACCTTGTATTGAGAAA+GGG | - | chr1_2:76120853-76120872 | Msa0093340:intron | 30.0% | |
| TTACTACCTTGTATTGAGAA+AGG | - | chr1_2:76120854-76120873 | Msa0093340:intron | 30.0% | |
| GATGATGAAGAAGAAATTGA+TGG | + | chr1_2:76120899-76120918 | Msa0093350:CDS | 30.0% | |
| !! | GTCCTTTAAAATCTCTATTC+CGG | - | chr1_2:76121003-76121022 | Msa0093340:intron | 30.0% |
| CATAAAGAAGATCAAGATGA+TGG | + | chr1_2:76121043-76121062 | Msa0093350:CDS | 30.0% | |
| GTGATTTATCTTTGCCAAAA+TGG | + | chr1_2:76121065-76121084 | Msa0093350:CDS | 30.0% | |
| AAAAGTTCTTGTCATAACGA+AGG | - | chr1_2:76121156-76121175 | Msa0093340:intron | 30.0% | |
| ! | TATGACAAGAACTTTTGTGT+TGG | + | chr1_2:76121160-76121179 | Msa0093350:CDS | 30.0% |
| ACTAAGCAAGTTGTAGTTAA+GGG | + | chr1_2:76121299-76121318 | Msa0093350:intron | 30.0% | |
| !! | CTTTGCATAAGCTCTAAAAT+AGG | - | chr1_2:76121339-76121358 | Msa0093340:intron | 30.0% |
| ! | CACGGGTAAAATTTAGAATA+AGG | - | chr1_2:76121680-76121699 | Msa0093340:intron | 30.0% |
| ! | CTTATTCTAAATTTTACCCG+TGG | + | chr1_2:76121678-76121697 | Msa0093350:intron | 30.0% |
| TATTTCGAAAGAAATCACCA+CGG | - | chr1_2:76121698-76121717 | Msa0093340:intron | 30.0% | |
| !! | GTTTTTAAGAGGATTATGCT+TGG | + | chr1_2:76121739-76121758 | Msa0093350:intron | 30.0% |
| CATAGTGAAGAGAAAAAAAG+TGG | - | chr1_2:76121832-76121851 | Msa0093340:intron | 30.0% | |
| !!! | CACTTTTTTTCTCTTCACTA+TGG | + | chr1_2:76121830-76121849 | Msa0093350:intron | 30.0% |
| !!! | CGCTTGGTATTTTTTTAGTA+AGG | + | chr1_2:76121859-76121878 | Msa0093350:intron | 30.0% |
| TATGCTTACTTCAAAAACCT+TGG | - | chr1_2:76122351-76122370 | Msa0093340:intron | 30.0% | |
| TTTCCTATGAAAAACTTGAG+AGG | - | chr1_2:76122495-76122514 | Msa0093340:CDS | 30.0% | |
| CATTTGGCATGTATCAATAT+TGG | + | chr1_2:76122573-76122592 | Msa0093350:intron | 30.0% | |
| ATGATGATTCTCATGATTTG+AGG | + | chr1_2:76122784-76122803 | Msa0093350:CDS | 30.0% | |
| ATTCGGAAAAGAGGATGAAA+AGG | + | chr1_2:76119850-76119869 | Msa0093350:CDS | 35.0% | |
| TAGTGATGAAGATGATGCTA+AGG | + | chr1_2:76119890-76119909 | Msa0093350:CDS | 35.0% | |
| ! | TGTGGGAAAACTTTTAGCAA+TGG | + | chr1_2:76119954-76119973 | Msa0093350:CDS | 35.0% |
| TCTTAAGAAAGTGAGATCTC+CGG | - | chr1_2:76119998-76120017 | Msa0093340:intron | 35.0% | |
| AACTACCTTGTATTGAGAGA+GGG | - | chr1_2:76120055-76120074 | Msa0093340:intron | 35.0% | |
| TAACTACCTTGTATTGAGAG+AGG | - | chr1_2:76120056-76120075 | Msa0093340:intron | 35.0% | |
| AGTCTGAAAAGAGGATAAAG+AGG | + | chr1_2:76120132-76120151 | Msa0093350:CDS | 35.0% | |
| AAGTGATGAAGATGATGCTA+AGG | + | chr1_2:76120172-76120191 | Msa0093350:CDS | 35.0% | |
| ACACATCAATGCAATGTTTG+TGG | + | chr1_2:76120218-76120237 | Msa0093350:CDS | 35.0% | |
| ! | TGTGGCAAAACTTTTAGCAA+CGG | + | chr1_2:76120236-76120255 | Msa0093350:CDS | 35.0% |
| !! | TTTTAGCAACGGAAAAGCAT+TGG | + | chr1_2:76120247-76120266 | Msa0093350:CDS | 35.0% |
| !! | TTTAGCAACGGAAAAGCATT+GGG | + | chr1_2:76120248-76120267 | Msa0093350:CDS | 35.0% |
| CATGATGAAGTTTCTGCTTA+AGG | - | chr1_2:76120295-76120314 | Msa0093340:intron | 35.0% | |
| AGATCATAAGCATGATCATG+AGG | + | chr1_2:76120355-76120374 | Msa0093350:CDS | 35.0% | |
| CTATGAAGAGTCAGAAAAGA+GGG | + | chr1_2:76120382-76120401 | Msa0093350:CDS | 35.0% | |
| CATGATGAAGTTTCTGCTTA+AGG | - | chr1_2:76120295-76120314 | Msa0093340:intron | 35.0% | |
| AGATCATAAGCATGATCATG+AGG | + | chr1_2:76120355-76120374 | Msa0093350:CDS | 35.0% | |
| CTATGAAGAGTCAGAAAAGA+GGG | + | chr1_2:76120382-76120401 | Msa0093350:CDS | 35.0% | |
| TCTTAAGAAAGTGAGATCTC+CGG | - | chr1_2:76119998-76120017 | Msa0093340:intron | 35.0% | |
| AAAACCCCTTTCTCAATACA+AGG | + | chr1_2:76120845-76120864 | Msa0093350:CDS | 35.0% | |
| ACTACCTTGTATTGAGAAAG+GGG | - | chr1_2:76120852-76120871 | Msa0093340:intron | 35.0% | |
| ! | TTTTTGCAGAGAGAACAAGT+TGG | - | chr1_2:76120935-76120954 | Msa0093340:intron | 35.0% |
| ! | CACCGGAATAGAGATTTTAA+AGG | + | chr1_2:76120998-76121017 | Msa0093350:CDS | 35.0% |
| TCTTTATGATATTCAGTGGG+AGG | - | chr1_2:76121031-76121050 | Msa0093340:intron | 35.0% | |
| ! | AGAAGAGGTAGAAAGTGTAT+TGG | + | chr1_2:76121100-76121119 | Msa0093350:CDS | 35.0% |
| !! | AAAGTGTATTGGTAGTGTTG+AGG | + | chr1_2:76121111-76121130 | Msa0093350:CDS | 35.0% |
| ! | TGTGTTGGTGAAACATCAAA+TGG | + | chr1_2:76121175-76121194 | Msa0093350:CDS | 35.0% |
| ! | GTGTTGGTGAAACATCAAAT+GGG | + | chr1_2:76121176-76121195 | Msa0093350:CDS | 35.0% |
| GAATGAGTCGTATGTTATAG+AGG | + | chr1_2:76121276-76121295 | Msa0093350:intron | 35.0% | |
| GACTAAGCAAGTTGTAGTTA+AGG | + | chr1_2:76121298-76121317 | Msa0093350:intron | 35.0% | |
| CTAAGCAAGTTGTAGTTAAG+GGG | + | chr1_2:76121300-76121319 | Msa0093350:intron | 35.0% | |
| AAAATAGGCTCAATCCAAAC+AGG | + | chr1_2:76121509-76121528 | Msa0093350:intron | 35.0% | |
| ATTTCGAAAGAAATCACCAC+GGG | - | chr1_2:76121697-76121716 | Msa0093340:intron | 35.0% | |
| TTGAGAAAGAATAGAGAGGA+GGG | + | chr1_2:76122017-76122036 | Msa0093350:intron | 35.0% | |
| ! | GGAGGGAATTATTGTTGTTA+AGG | + | chr1_2:76122034-76122053 | Msa0093350:intron | 35.0% |
| ! | AATGCTTGTCCATTTTGTTG+GGG | - | chr1_2:76122464-76122483 | Msa0093340:CDS | 35.0% |
| ! | GAATGCTTGTCCATTTTGTT+GGG | - | chr1_2:76122465-76122484 | Msa0093340:CDS | 35.0% |
| ! | AGAATGCTTGTCCATTTTGT+TGG | - | chr1_2:76122466-76122485 | Msa0093340:CDS | 35.0% |
| ! | CTTCCTCTCAAGTTTTTCAT+AGG | + | chr1_2:76122489-76122508 | Msa0093350:intron | 35.0% |
| GATTCATTTCAACAAGTGAG+TGG | + | chr1_2:76122518-76122537 | Msa0093350:intron | 35.0% | |
| ! | TCCTTGTTATCACTACTAAG+CGG | - | chr1_2:76122684-76122703 | Msa0093340:five_prime_UTR | 35.0% |
| GGGATTGCATAACAAATGAT+AGG | - | chr1_2:76122760-76122779 | Msa0093340:five_prime_UTR | 35.0% | |
| ! | CCTCTTTTCCGAATCTTCAT+AGG | - | chr1_2:76119844-76119863 | Msa0093340:intron | 40.0% |
| CCTATGAAGATTCGGAAAAG+AGG | + | chr1_2:76119841-76119860 | Msa0093350:CDS | 40.0% | |
| TGAAGATGATGCTAAGGATG+AGG | + | chr1_2:76119896-76119915 | Msa0093350:CDS | 40.0% | |
| TCACATCAGTGCAATGTTTG+TGG | + | chr1_2:76119936-76119955 | Msa0093350:CDS | 40.0% | |
| CACATCAGTGCAATGTTTGT+GGG | + | chr1_2:76119937-76119956 | Msa0093350:CDS | 40.0% | |
| ACTACCTTGTATTGAGAGAG+GGG | - | chr1_2:76120054-76120073 | Msa0093340:intron | 40.0% | |
| ! | TCCTCTTTTCAGACTCTTCA+CGG | - | chr1_2:76120127-76120146 | Msa0093340:intron | 40.0% |
| GCTTAAGGAAGTGAGATCTT+CGG | - | chr1_2:76120280-76120299 | Msa0093340:intron | 40.0% | |
| ! | CCTCTTTTCTGACTCTTCAT+AGG | - | chr1_2:76120384-76120403 | Msa0093340:intron | 40.0% |
| CCTATGAAGAGTCAGAAAAG+AGG | + | chr1_2:76120381-76120400 | Msa0093350:CDS | 40.0% | |
| AGTCAGAAAAGAGGGTGAAA+AGG | + | chr1_2:76120390-76120409 | Msa0093350:CDS | 40.0% | |
| AAGCGATGAAGATGATGCTA+AGG | + | chr1_2:76120430-76120449 | Msa0093350:CDS | 40.0% | |
| TGAAGATGATGCTAAGGATG+AGG | + | chr1_2:76119896-76119915 | Msa0093350:CDS | 40.0% | |
| ACACATCAGTGCAATGTTTG+TGG | + | chr1_2:76120476-76120495 | Msa0093350:CDS | 40.0% | |
| GCTTAAGGAAGTGAGATCTT+CGG | - | chr1_2:76120280-76120299 | Msa0093340:intron | 40.0% | |
| ! | CCTCTTTTCTGACTCTTCAT+AGG | - | chr1_2:76120384-76120403 | Msa0093340:intron | 40.0% |
| CCTATGAAGAGTCAGAAAAG+AGG | + | chr1_2:76120381-76120400 | Msa0093350:CDS | 40.0% | |
| AGTCAGAAAAGAGGGTGAAA+AGG | + | chr1_2:76120390-76120409 | Msa0093350:CDS | 40.0% | |
| AAGCGATGAAGATGATGCTA+AGG | + | chr1_2:76120430-76120449 | Msa0093350:CDS | 40.0% | |
| TGAAGATGATGCTAAGGATG+AGG | + | chr1_2:76119896-76119915 | Msa0093350:CDS | 40.0% | |
| ACACATCAGTGCAATGTTTG+TGG | + | chr1_2:76120476-76120495 | Msa0093350:CDS | 40.0% | |
| ! | CCATACAAAGCATTCATGGT+TGG | - | chr1_2:76120965-76120984 | Msa0093340:intron | 40.0% |
| CCAACCATGAATGCTTTGTA+TGG | + | chr1_2:76120962-76120981 | Msa0093350:CDS | 40.0% | |
| ! | GTGACCATACAAAGCATTCA+TGG | - | chr1_2:76120969-76120988 | Msa0093340:intron | 40.0% |
| ATGCTTTGTATGGTCACATG+AGG | + | chr1_2:76120972-76120991 | Msa0093350:CDS | 40.0% | |
| !! | CTATCTCTCTTCTGCCATTT+TGG | - | chr1_2:76121082-76121101 | Msa0093340:intron | 40.0% |
| GGTGAAACATCAAATGGGAA+TGG | + | chr1_2:76121181-76121200 | Msa0093350:CDS | 40.0% | |
| AGTGATAAGCAGCCAAAGAA+AGG | + | chr1_2:76121235-76121254 | Msa0093350:CDS | 40.0% | |
| AAGCAGCCAAAGAAAGGAAA+AGG | + | chr1_2:76121241-76121260 | Msa0093350:CDS | 40.0% | |
| !!! | TTCACTATGGTTTTGTCGCT+TGG | + | chr1_2:76121843-76121862 | Msa0093350:intron | 40.0% |
| ! | TTAATGTCACTTGCGCATGA+AGG | + | chr1_2:76121981-76122000 | Msa0093350:intron | 40.0% |
| ! | AGCGTTGAGAAAGAATAGAG+AGG | + | chr1_2:76122013-76122032 | Msa0093350:intron | 40.0% |
| GTTGAGAAAGAATAGAGAGG+AGG | + | chr1_2:76122016-76122035 | Msa0093350:intron | 40.0% | |
| AGGAACAACAAGAAAGGAGA+AGG | + | chr1_2:76122099-76122118 | Msa0093350:intron | 40.0% | |
| AGAAAGGAGAAGGAACAACT+AGG | + | chr1_2:76122109-76122128 | Msa0093350:intron | 40.0% | |
| ATGGTAAAAAACTCGCACCA+AGG | + | chr1_2:76122331-76122350 | Msa0093350:intron | 40.0% | |
| TGGCAATTACCCCAACAAAA+TGG | + | chr1_2:76122452-76122471 | Msa0093350:intron | 40.0% | |
| ATGCACTGTATGTAGAACGA+TGG | + | chr1_2:76122640-76122659 | Msa0093350:intron | 40.0% | |
| !! | AGCAATGGAAAAGCATTGGG+TGG | + | chr1_2:76119969-76119988 | Msa0093350:CDS | 45.0% |
| CAAACCCCTCTCTCAATACA+AGG | + | chr1_2:76120047-76120066 | Msa0093350:CDS | 45.0% | |
| ! | CCTCTTTTCAGACTCTTCAC+GGG | - | chr1_2:76120126-76120145 | Msa0093340:intron | 45.0% |
| !! | AGTAACGGAAAAGCATTGGG+TGG | + | chr1_2:76120509-76120528 | Msa0093350:CDS | 45.0% |
| !! | AGTAACGGAAAAGCATTGGG+TGG | + | chr1_2:76120509-76120528 | Msa0093350:CDS | 45.0% |
| TGGCAGAAGAGAGATAGAAG+AGG | + | chr1_2:76121085-76121104 | Msa0093350:CDS | 45.0% | |
| !! | GTGTATTGGTAGTGTTGAGG+CGG | + | chr1_2:76121114-76121133 | Msa0093350:CDS | 45.0% |
| GTTGTAGTTAAGGGGTCGTT+TGG | + | chr1_2:76121308-76121327 | Msa0093350:intron | 45.0% | |
| AGTTAAGGGGTCGTTTGGAT+TGG | + | chr1_2:76121313-76121332 | Msa0093350:intron | 45.0% | |
| ATGTCACATACCCTTAGCAC+AGG | + | chr1_2:76122405-76122424 | Msa0093350:intron | 45.0% | |
| TGGAGCTTATCCTGTGCTAA+GGG | - | chr1_2:76122418-76122437 | Msa0093340:CDS | 45.0% | |
| TTGGAGCTTATCCTGTGCTA+AGG | - | chr1_2:76122419-76122438 | Msa0093340:CDS | 45.0% | |
| GCCGCTTAGTAGTGATAACA+AGG | + | chr1_2:76122680-76122699 | Msa0093350:CDS | 45.0% | |
| GTACATCACCGAGCAAGAAT+CGG | - | chr1_2:76122713-76122732 | Msa0093340:five_prime_UTR | 45.0% | |
| ! | TTCTTGCTCGGTGATGTACA+CGG | + | chr1_2:76122714-76122733 | Msa0093350:CDS | 45.0% |
| !! | GAAAAGCATTGGGTGGTCAC+CGG | + | chr1_2:76119976-76119995 | Msa0093350:CDS | 50.0% |
| CCCGTGAAGAGTCTGAAAAG+AGG | + | chr1_2:76120123-76120142 | Msa0093350:CDS | 50.0% | |
| !! | AGCAACGGAAAAGCATTGGG+TGG | + | chr1_2:76120251-76120270 | Msa0093350:CDS | 50.0% |
| !! | GAAAAGCATTGGGTGGTCAC+CGG | + | chr1_2:76119976-76119995 | Msa0093350:CDS | 50.0% |
| ATGGTCACATGAGGACTCAC+CGG | + | chr1_2:76120981-76121000 | Msa0093350:CDS | 50.0% | |
| TGGGAATGGCAAGAATGAGC+TGG | + | chr1_2:76121195-76121214 | Msa0093350:CDS | 50.0% | |
| GGGAATGGCAAGAATGAGCT+GGG | + | chr1_2:76121196-76121215 | Msa0093350:CDS | 50.0% | |
| CATTATGACGTGGGCCTGTT+TGG | - | chr1_2:76121526-76121545 | Msa0093340:intron | 50.0% | |
| ! | ATGTCACTTGCGCATGAAGG+AGG | + | chr1_2:76121984-76122003 | Msa0093350:intron | 50.0% |
| ! | TTGCCACTCTAGAGGTTGCT+TGG | - | chr1_2:76122438-76122457 | Msa0093340:CDS | 50.0% |
| TGGGGTAATTGCCACTCTAG+AGG | - | chr1_2:76122446-76122465 | Msa0093340:CDS | 50.0% | |
| GATGACCTCCGATTCTTGCT+CGG | + | chr1_2:76122702-76122721 | Msa0093350:CDS | 50.0% | |
| ! | GCTCCAAGCAACCTCTAGAG+TGG | + | chr1_2:76122432-76122451 | Msa0093350:intron | 55.0% |
| CATCACCGAGCAAGAATCGG+AGG | - | chr1_2:76122710-76122729 | Msa0093340:five_prime_UTR | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 76119807 | 76122827 | 76119807 | ID=Msa0093350;Name=Msa0093350 |
| chr1_2 | mRNA | 76119807 | 76122827 | 76119807 | ID=Msa0093350-mRNA-1;Parent=Msa0093350;Name=Msa0093350-mRNA-1;_AED=0.16;_eAED=0.19;_QI=0|0|0|0.5|1|1|2|0|542 |
| chr1_2 | exon | 76119807 | 76121262 | 76119807 | ID=Msa0093350-mRNA-1:exon:26832;Parent=Msa0093350-mRNA-1 |
| chr1_2 | exon | 76122655 | 76122827 | 76122655 | ID=Msa0093350-mRNA-1:exon:26833;Parent=Msa0093350-mRNA-1 |
| chr1_2 | CDS | 76119807 | 76121262 | 76119807 | ID=Msa0093350-mRNA-1:cds;Parent=Msa0093350-mRNA-1 |
| chr1_2 | CDS | 76122655 | 76122827 | 76122655 | ID=Msa0093350-mRNA-1:cds;Parent=Msa0093350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
