Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0093540 | XP_039687055.1 | 88.182 | 220 | 22 | 2 | 1 | 217 | 1 | 219 | 1.63e-135 | 389 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0093540 | sp|F4JIJ7|BH162_ARATH | 37.989 | 179 | 97 | 5 | 13 | 180 | 11 | 186 | 1.53e-28 | 108 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0093540 | A0A072VCG2 | 88.182 | 220 | 22 | 2 | 1 | 217 | 1 | 219 | 7.77e-136 | 389 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0093540 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0093540 | MtrunA17_Chr2g0324511 | 84.663 | 163 | 22 | 1 | 1 | 160 | 1 | 163 | 9.38e-95 | 274 |
| Msa0093540 | MtrunA17_Chr4g0040201 | 64.179 | 201 | 57 | 5 | 9 | 201 | 8 | 201 | 9.06e-84 | 247 |
| Msa0093540 | MtrunA17_Chr2g0324571 | 84.746 | 118 | 14 | 2 | 46 | 160 | 2 | 118 | 5.57e-65 | 197 |
| Msa0093540 | MtrunA17_Chr2g0324521 | 81.739 | 115 | 21 | 0 | 46 | 160 | 2 | 116 | 1.29e-63 | 193 |
| Msa0093540 | MtrunA17_Chr2g0282341 | 37.037 | 135 | 79 | 2 | 49 | 181 | 4 | 134 | 2.21e-27 | 101 |
| Msa0093540 | MtrunA17_Chr2g0324531 | 76.271 | 59 | 14 | 0 | 159 | 217 | 2 | 60 | 1.54e-26 | 97.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0093540 | AT4G20970.1 | 37.989 | 179 | 97 | 5 | 13 | 180 | 11 | 186 | 1.55e-29 | 108 |
| Msa0093540 | AT1G10585.1 | 28.492 | 179 | 118 | 4 | 7 | 184 | 8 | 177 | 1.33e-13 | 67.0 |
Find 48 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTCTGGGATCTTGAAAT+TGG | 0.192948 | 1_2:+76294378 | Msa0093540:CDS |
| TTTCAACCTCTCGCCTATTT+TGG | 0.214946 | 1_2:-76294313 | None:intergenic |
| TATCTCTTCAAATTCTTCTT+TGG | 0.234992 | 1_2:+76292655 | Msa0093540:CDS |
| TGGAAACACAACCTCAATTC+TGG | 0.252791 | 1_2:+76294364 | Msa0093540:CDS |
| GGTGGCTGCTCGAGTTCTTC+TGG | 0.260572 | 1_2:+76292500 | Msa0093540:CDS |
| AGAGAAGAAAGAAAGTTTAA+TGG | 0.275748 | 1_2:+76292457 | Msa0093540:CDS |
| CCGCAATCTTTGTTACGATT+TGG | 0.283657 | 1_2:+76294285 | Msa0093540:CDS |
| TCTATTCTTCATCAAGGATT+AGG | 0.288350 | 1_2:-76294447 | None:intergenic |
| ATCACCTTTGGATCATAGTT+AGG | 0.324173 | 1_2:-76291935 | None:intergenic |
| GAAGAATAGATTAAAGTATC+TGG | 0.341952 | 1_2:+76294460 | Msa0093540:three_prime_UTR |
| GAGAGTTGAGTTTAGAAAAG+AGG | 0.353043 | 1_2:-76291907 | None:intergenic |
| GAGAAGAAAGAAAGTTTAAT+GGG | 0.355968 | 1_2:+76292458 | Msa0093540:CDS |
| CGATTTGGAGAAACCAAAAT+AGG | 0.365801 | 1_2:+76294300 | Msa0093540:CDS |
| TAGAAAAGAGGATCTTCATT+TGG | 0.386590 | 1_2:-76291895 | None:intergenic |
| ATTGCCTCATATACTTGATC+AGG | 0.402698 | 1_2:-76292392 | None:intergenic |
| TCTTCAAATTCTTCTTTGGC+TGG | 0.403407 | 1_2:+76292659 | Msa0093540:CDS |
| TTGAAATTGGAAGTGAGAGT+TGG | 0.404544 | 1_2:+76294391 | Msa0093540:CDS |
| TAACTTCACAGAAAATAAAA+TGG | 0.408004 | 1_2:-76292601 | None:intergenic |
| AACGATCTTTCTTTCTACTT+TGG | 0.409199 | 1_2:-76291855 | None:intergenic |
| CAAACATTATATTTGTCTCT+AGG | 0.410779 | 1_2:-76292430 | None:intergenic |
| CGAGAGGTTGAAAGCATTTG+TGG | 0.420058 | 1_2:+76294323 | Msa0093540:CDS |
| CTTTAATCTATTCTTCATCA+AGG | 0.435959 | 1_2:-76294453 | None:intergenic |
| AAAATAGAGATTCATGAAAT+GGG | 0.456591 | 1_2:+76292539 | Msa0093540:CDS |
| TCTACTTTGGTTGAAGAAGA+AGG | 0.464564 | 1_2:-76291842 | None:intergenic |
| TGAAATTGGAAGTGAGAGTT+GGG | 0.469657 | 1_2:+76294392 | Msa0093540:CDS |
| TCACCTTTGGATCATAGTTA+GGG | 0.469862 | 1_2:-76291934 | None:intergenic |
| ATTTCAAGATCCCAGAATTG+AGG | 0.481933 | 1_2:-76294375 | None:intergenic |
| TCAAGGATTAGGTAAACTCT+TGG | 0.489378 | 1_2:-76294436 | None:intergenic |
| GGAAACACAACCTCAATTCT+GGG | 0.497186 | 1_2:+76294365 | Msa0093540:CDS |
| ATTACCTGATCAAGTATATG+AGG | 0.503237 | 1_2:+76292388 | Msa0093540:CDS |
| TCATATACTTGATCAGGTAA+TGG | 0.514176 | 1_2:-76292386 | None:intergenic |
| TCTTCATACCGTACATGCTC+AGG | 0.517547 | 1_2:+76292691 | Msa0093540:CDS |
| TATATATACCTGAGCATGTA+CGG | 0.538419 | 1_2:-76292699 | None:intergenic |
| TACAAGTCATTGTAACATGT+GGG | 0.544345 | 1_2:+76292570 | Msa0093540:CDS |
| TTGTGTTTCCACATCGCTCA+CGG | 0.549953 | 1_2:-76294352 | None:intergenic |
| CTACAAGTCATTGTAACATG+TGG | 0.589705 | 1_2:+76292569 | Msa0093540:CDS |
| TCTCCCTAACTATGATCCAA+AGG | 0.591025 | 1_2:+76291931 | Msa0093540:CDS |
| AGGTTGAAAGCATTTGTGGA+AGG | 0.602245 | 1_2:+76294327 | Msa0093540:CDS |
| CCAAATCGTAACAAAGATTG+CGG | 0.605051 | 1_2:-76294285 | None:intergenic |
| AATAAGAGATCACGTGATGG+TGG | 0.625950 | 1_2:+76292482 | Msa0093540:CDS |
| TGTTACAATGACTTGTAGAG+TGG | 0.628096 | 1_2:-76292564 | None:intergenic |
| GAGAAACCAAAATAGGCGAG+AGG | 0.652629 | 1_2:+76294307 | Msa0093540:CDS |
| GGAAATAAGAGATCACGTGA+TGG | 0.672227 | 1_2:+76292479 | Msa0093540:CDS |
| ACAAGTCATTGTAACATGTG+GGG | 0.680252 | 1_2:+76292571 | Msa0093540:CDS |
| GGAAGGATCCGTGAGCGATG+TGG | 0.680798 | 1_2:+76294344 | Msa0093540:CDS |
| TAAATGGATCAAAATCAACA+AGG | 0.698469 | 1_2:+76291812 | None:intergenic |
| ATGGATCAAAATCAACAAGG+AGG | 0.707629 | 1_2:+76291815 | Msa0093540:CDS |
| ACTGCATGAAGAAAACGTCG+AGG | 0.726422 | 1_2:+76292631 | Msa0093540:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTGCAATAAATTTTATA+CGG | - | chr1_2:76293245-76293264 | None:intergenic | 10.0% |
| !! | TAAAATAAAAAAATCACCTT+TGG | - | chr1_2:76291950-76291969 | None:intergenic | 15.0% |
| !!! | TTATTTTATTTTATAAGCCA+AGG | + | chr1_2:76291962-76291981 | Msa0093540:intron | 15.0% |
| !!! | TATTTTATTTTATAAGCCAA+GGG | + | chr1_2:76291963-76291982 | Msa0093540:intron | 15.0% |
| !! | TGTTAATTAATTAAAAGAAG+AGG | - | chr1_2:76292280-76292299 | None:intergenic | 15.0% |
| !! | TTGAATAACACATATTAATT+TGG | + | chr1_2:76292329-76292348 | Msa0093540:intron | 15.0% |
| !!! | TTATCAATTGTTTCTATTTT+AGG | + | chr1_2:76292982-76293001 | Msa0093540:intron | 15.0% |
| !!! | TATCAATTGTTTCTATTTTA+GGG | + | chr1_2:76292983-76293002 | Msa0093540:intron | 15.0% |
| !!! | TTGTTATTGCAATAAATTTT+AGG | - | chr1_2:76293188-76293207 | None:intergenic | 15.0% |
| !! | TTCTTGTCAAAAAAAAAAAA+AGG | + | chr1_2:76293673-76293692 | Msa0093540:intron | 15.0% |
| !! | AAATCCAAAAACTTAAAAAA+TGG | + | chr1_2:76293975-76293994 | Msa0093540:intron | 15.0% |
| !!! | ATTTCCATTTTTTAAGTTTT+TGG | - | chr1_2:76293982-76294001 | None:intergenic | 15.0% |
| !!! | TTTTGTAAACACCTTTTATT+TGG | - | chr1_2:76292165-76292184 | None:intergenic | 20.0% |
| !!! | TGTTATTTTTCATTTAATGC+AGG | + | chr1_2:76292352-76292371 | Msa0093540:intron | 20.0% |
| !!! | ATTTCATGAATCTCTATTTT+TGG | - | chr1_2:76292539-76292558 | None:intergenic | 20.0% |
| !! | AAAAATAGAGATTCATGAAA+TGG | + | chr1_2:76292538-76292557 | Msa0093540:CDS | 20.0% |
| !! | AAAATAGAGATTCATGAAAT+GGG | + | chr1_2:76292539-76292558 | Msa0093540:CDS | 20.0% |
| !! | TAACTTCACAGAAAATAAAA+TGG | - | chr1_2:76292604-76292623 | None:intergenic | 20.0% |
| !! | TATATATATACATACACACA+TGG | + | chr1_2:76292714-76292733 | Msa0093540:intron | 20.0% |
| !!! | TTATTGCAATAAATTTTAGG+AGG | - | chr1_2:76293185-76293204 | None:intergenic | 20.0% |
| !! | TATTTCTTAACTTATGTCTA+AGG | + | chr1_2:76293736-76293755 | Msa0093540:intron | 20.0% |
| !! | AATGACATGTCATAAAAAAT+GGG | - | chr1_2:76293778-76293797 | None:intergenic | 20.0% |
| !! | AAATGACATGTCATAAAAAA+TGG | - | chr1_2:76293779-76293798 | None:intergenic | 20.0% |
| !! | AGAAAAAAAATGTTAGATCA+TGG | - | chr1_2:76293859-76293878 | None:intergenic | 20.0% |
| ! | GAATATACATATGAATGTGA+TGG | - | chr1_2:76292004-76292023 | None:intergenic | 25.0% |
| ! | TTCATATGTATATTCATGTG+AGG | + | chr1_2:76292009-76292028 | Msa0093540:intron | 25.0% |
| !!! | AAGGTCGATTTTTTTTTTAC+AGG | - | chr1_2:76292060-76292079 | None:intergenic | 25.0% |
| ! | CAATTGTCACATATGTTTAA+CGG | + | chr1_2:76292136-76292155 | Msa0093540:intron | 25.0% |
| ! | TTTAACGGTTTCCAAATAAA+AGG | + | chr1_2:76292151-76292170 | Msa0093540:intron | 25.0% |
| ! | ACACTCTAATAAGTGTAAAA+TGG | - | chr1_2:76292215-76292234 | None:intergenic | 25.0% |
| ! | GAGTACCTATATATTCATAT+AGG | + | chr1_2:76292250-76292269 | Msa0093540:intron | 25.0% |
| ! | GTGAACCTATATGAATATAT+AGG | - | chr1_2:76292258-76292277 | None:intergenic | 25.0% |
| ! | CAAACATTATATTTGTCTCT+AGG | - | chr1_2:76292433-76292452 | None:intergenic | 25.0% |
| ! | AGAGAAGAAAGAAAGTTTAA+TGG | + | chr1_2:76292457-76292476 | Msa0093540:CDS | 25.0% |
| ! | GAGAAGAAAGAAAGTTTAAT+GGG | + | chr1_2:76292458-76292477 | Msa0093540:CDS | 25.0% |
| ! | TATCTCTTCAAATTCTTCTT+TGG | + | chr1_2:76292655-76292674 | Msa0093540:CDS | 25.0% |
| ! | TACATATCACTATTGTTCTT+TGG | + | chr1_2:76292841-76292860 | Msa0093540:intron | 25.0% |
| ! | ACATATCACTATTGTTCTTT+GGG | + | chr1_2:76292842-76292861 | Msa0093540:intron | 25.0% |
| ! | TCTAGTTACTTATATAGAGA+GGG | - | chr1_2:76293108-76293127 | None:intergenic | 25.0% |
| ! | ATCTAGTTACTTATATAGAG+AGG | - | chr1_2:76293109-76293128 | None:intergenic | 25.0% |
| !! | AATAAATTTTATACGGTAGC+AGG | - | chr1_2:76293238-76293257 | None:intergenic | 25.0% |
| ! | CGATTTAATCTCATATATGA+TGG | - | chr1_2:76293341-76293360 | None:intergenic | 25.0% |
| !!! | CAATTTTGAAAATTTAGTGC+AGG | + | chr1_2:76293462-76293481 | Msa0093540:intron | 25.0% |
| !! | GTTAGTATGTGTTTTTCTAA+AGG | - | chr1_2:76293553-76293572 | None:intergenic | 25.0% |
| ! | AAATGTTAGATCATGGTTTA+TGG | - | chr1_2:76293852-76293871 | None:intergenic | 25.0% |
| !! | GTCTTAACAATATTTTGTGA+AGG | + | chr1_2:76294182-76294201 | Msa0093540:intron | 25.0% |
| ! | CTTTAATCTATTCTTCATCA+AGG | - | chr1_2:76294456-76294475 | None:intergenic | 25.0% |
| AACGATCTTTCTTTCTACTT+TGG | - | chr1_2:76291858-76291877 | None:intergenic | 30.0% | |
| TAGAAAAGAGGATCTTCATT+TGG | - | chr1_2:76291898-76291917 | None:intergenic | 30.0% | |
| ATATATAGGTACTCTACTTG+TGG | - | chr1_2:76292244-76292263 | None:intergenic | 30.0% | |
| TTAACACTATAAGCTCTTCT+TGG | + | chr1_2:76292305-76292324 | Msa0093540:intron | 30.0% | |
| TCATATACTTGATCAGGTAA+TGG | - | chr1_2:76292389-76292408 | None:intergenic | 30.0% | |
| ATTACCTGATCAAGTATATG+AGG | + | chr1_2:76292388-76292407 | Msa0093540:CDS | 30.0% | |
| TACAAGTCATTGTAACATGT+GGG | + | chr1_2:76292570-76292589 | Msa0093540:CDS | 30.0% | |
| TATATATACCTGAGCATGTA+CGG | - | chr1_2:76292702-76292721 | None:intergenic | 30.0% | |
| TGGCAAATCTTAAAGAACTA+GGG | - | chr1_2:76293024-76293043 | None:intergenic | 30.0% | |
| ATGGCAAATCTTAAAGAACT+AGG | - | chr1_2:76293025-76293044 | None:intergenic | 30.0% | |
| TAATTGCAGTTCCTTCAATA+CGG | + | chr1_2:76293209-76293228 | Msa0093540:intron | 30.0% | |
| TAACAAATAACCTCCATGAA+AGG | + | chr1_2:76293262-76293281 | Msa0093540:intron | 30.0% | |
| AACAAATAACCTCCATGAAA+GGG | + | chr1_2:76293263-76293282 | Msa0093540:intron | 30.0% | |
| ATGATGATAGATGCTAATGA+TGG | - | chr1_2:76293408-76293427 | None:intergenic | 30.0% | |
| TCTATTCTTCATCAAGGATT+AGG | - | chr1_2:76294450-76294469 | None:intergenic | 30.0% | |
| ATGGATCAAAATCAACAAGG+AGG | + | chr1_2:76291815-76291834 | Msa0093540:CDS | 35.0% | |
| TCTACTTTGGTTGAAGAAGA+AGG | - | chr1_2:76291845-76291864 | None:intergenic | 35.0% | |
| GAGAGTTGAGTTTAGAAAAG+AGG | - | chr1_2:76291910-76291929 | None:intergenic | 35.0% | |
| TCACCTTTGGATCATAGTTA+GGG | - | chr1_2:76291937-76291956 | None:intergenic | 35.0% | |
| ATCACCTTTGGATCATAGTT+AGG | - | chr1_2:76291938-76291957 | None:intergenic | 35.0% | |
| GAAATTAAACAGATCACCCT+TGG | - | chr1_2:76291982-76292001 | None:intergenic | 35.0% | |
| CCAATCTCAAAGAAAACTCA+AGG | - | chr1_2:76292079-76292098 | None:intergenic | 35.0% | |
| !!! | CCTTGAGTTTTCTTTGAGAT+TGG | + | chr1_2:76292076-76292095 | Msa0093540:intron | 35.0% |
| ATTGCCTCATATACTTGATC+AGG | - | chr1_2:76292395-76292414 | None:intergenic | 35.0% | |
| ! | TGTTACAATGACTTGTAGAG+TGG | - | chr1_2:76292567-76292586 | None:intergenic | 35.0% |
| CTACAAGTCATTGTAACATG+TGG | + | chr1_2:76292569-76292588 | Msa0093540:CDS | 35.0% | |
| ACAAGTCATTGTAACATGTG+GGG | + | chr1_2:76292571-76292590 | Msa0093540:CDS | 35.0% | |
| TCTTCAAATTCTTCTTTGGC+TGG | + | chr1_2:76292659-76292678 | Msa0093540:CDS | 35.0% | |
| AGCCAGAAAACTTGAATAGT+GGG | + | chr1_2:76292758-76292777 | Msa0093540:intron | 35.0% | |
| TAACATCAACCGTACAATCA+GGG | - | chr1_2:76293521-76293540 | None:intergenic | 35.0% | |
| TATATTCCGAACTGAGTTCT+AGG | + | chr1_2:76293941-76293960 | Msa0093540:intron | 35.0% | |
| ATATTCCGAACTGAGTTCTA+GGG | + | chr1_2:76293942-76293961 | Msa0093540:intron | 35.0% | |
| CCAAATCGTAACAAAGATTG+CGG | - | chr1_2:76294288-76294307 | None:intergenic | 35.0% | |
| ! | CGATTTGGAGAAACCAAAAT+AGG | + | chr1_2:76294300-76294319 | Msa0093540:CDS | 35.0% |
| ATTTCAAGATCCCAGAATTG+AGG | - | chr1_2:76294378-76294397 | None:intergenic | 35.0% | |
| !! | CAATTCTGGGATCTTGAAAT+TGG | + | chr1_2:76294378-76294397 | Msa0093540:CDS | 35.0% |
| TTGAAATTGGAAGTGAGAGT+TGG | + | chr1_2:76294391-76294410 | Msa0093540:CDS | 35.0% | |
| TGAAATTGGAAGTGAGAGTT+GGG | + | chr1_2:76294392-76294411 | Msa0093540:CDS | 35.0% | |
| TCAAGGATTAGGTAAACTCT+TGG | - | chr1_2:76294439-76294458 | None:intergenic | 35.0% | |
| TCTCCCTAACTATGATCCAA+AGG | + | chr1_2:76291931-76291950 | Msa0093540:CDS | 40.0% | |
| GGAAATAAGAGATCACGTGA+TGG | + | chr1_2:76292479-76292498 | Msa0093540:CDS | 40.0% | |
| AATAAGAGATCACGTGATGG+TGG | + | chr1_2:76292482-76292501 | Msa0093540:CDS | 40.0% | |
| GAGCCAGAAAACTTGAATAG+TGG | + | chr1_2:76292757-76292776 | Msa0093540:intron | 40.0% | |
| GCCAGAAAACTTGAATAGTG+GGG | + | chr1_2:76292759-76292778 | Msa0093540:intron | 40.0% | |
| CCAGAAAACTTGAATAGTGG+GGG | + | chr1_2:76292760-76292779 | Msa0093540:intron | 40.0% | |
| ! | GTTCTTTGGGAAATGCTAAC+AGG | + | chr1_2:76292855-76292874 | Msa0093540:intron | 40.0% |
| AAATGCTAACAGGTGCTCTT+AGG | + | chr1_2:76292865-76292884 | Msa0093540:intron | 40.0% | |
| AATGCTAACAGGTGCTCTTA+GGG | + | chr1_2:76292866-76292885 | Msa0093540:intron | 40.0% | |
| GTATGTTGCAAACCCTTTCA+TGG | - | chr1_2:76293278-76293297 | None:intergenic | 40.0% | |
| AACATCAACCGTACAATCAG+GGG | - | chr1_2:76293520-76293539 | None:intergenic | 40.0% | |
| GTAACATCAACCGTACAATC+AGG | - | chr1_2:76293522-76293541 | None:intergenic | 40.0% | |
| ! | ACATACTAACTTGTGCCCTA+TGG | + | chr1_2:76293563-76293582 | Msa0093540:intron | 40.0% |
| ! | CATACTAACTTGTGCCCTAT+GGG | + | chr1_2:76293564-76293583 | Msa0093540:intron | 40.0% |
| ! | TATTCCGAACTGAGTTCTAG+GGG | + | chr1_2:76293943-76293962 | Msa0093540:intron | 40.0% |
| TGTGTGTGTGTGTGTATTCA+TGG | - | chr1_2:76294099-76294118 | None:intergenic | 40.0% | |
| CCGCAATCTTTGTTACGATT+TGG | + | chr1_2:76294285-76294304 | Msa0093540:CDS | 40.0% | |
| ! | TTTCAACCTCTCGCCTATTT+TGG | - | chr1_2:76294316-76294335 | None:intergenic | 40.0% |
| !! | AGGTTGAAAGCATTTGTGGA+AGG | + | chr1_2:76294327-76294346 | Msa0093540:CDS | 40.0% |
| TGGAAACACAACCTCAATTC+TGG | + | chr1_2:76294364-76294383 | Msa0093540:CDS | 40.0% | |
| GGAAACACAACCTCAATTCT+GGG | + | chr1_2:76294365-76294384 | Msa0093540:CDS | 40.0% | |
| ACTGCATGAAGAAAACGTCG+AGG | + | chr1_2:76292631-76292650 | Msa0093540:CDS | 45.0% | |
| TCTTCATACCGTACATGCTC+AGG | + | chr1_2:76292691-76292710 | Msa0093540:CDS | 45.0% | |
| GGTCTAATTGTACGCAGTAG+CGG | + | chr1_2:76292735-76292754 | Msa0093540:intron | 45.0% | |
| !! | CCCCCACTATTCAAGTTTTC+TGG | - | chr1_2:76292763-76292782 | None:intergenic | 45.0% |
| TGTTGCAAACCCTTTCATGG+AGG | - | chr1_2:76293275-76293294 | None:intergenic | 45.0% | |
| AGCCACACATAAGGTTGTGT+GGG | - | chr1_2:76293494-76293513 | None:intergenic | 45.0% | |
| !! | ATTCCGAACTGAGTTCTAGG+GGG | + | chr1_2:76293944-76293963 | Msa0093540:intron | 45.0% |
| GAGAAACCAAAATAGGCGAG+AGG | + | chr1_2:76294307-76294326 | Msa0093540:CDS | 45.0% | |
| !! | CGAGAGGTTGAAAGCATTTG+TGG | + | chr1_2:76294323-76294342 | Msa0093540:CDS | 45.0% |
| TTGTGTTTCCACATCGCTCA+CGG | - | chr1_2:76294355-76294374 | None:intergenic | 45.0% | |
| !!! | TATTTAATATTTTCAAAATA+TGG | - | chr1_2:76293044-76293063 | None:intergenic | 5.0% |
| !! | TATTTAAATAAATACATATT+TGG | - | chr1_2:76294070-76294089 | None:intergenic | 5.0% |
| GTAGCAGGCAACCGTATTGA+AGG | - | chr1_2:76293223-76293242 | None:intergenic | 50.0% | |
| AGCCCACACAACCTTATGTG+TGG | + | chr1_2:76293489-76293508 | Msa0093540:intron | 50.0% | |
| GAGCCACACATAAGGTTGTG+TGG | - | chr1_2:76293495-76293514 | None:intergenic | 50.0% | |
| ATCAACCGTACAATCAGGGG+CGG | - | chr1_2:76293517-76293536 | None:intergenic | 50.0% | |
| AACTTGTGCCCTATGGGCTT+AGG | + | chr1_2:76293570-76293589 | Msa0093540:intron | 50.0% | |
| ACTTGTGCCCTATGGGCTTA+GGG | + | chr1_2:76293571-76293590 | Msa0093540:intron | 50.0% | |
| ACTTGTGCCCTAAGCCCATA+GGG | - | chr1_2:76293581-76293600 | None:intergenic | 50.0% | |
| CTTCCCCCTAGAACTCAGTT+CGG | - | chr1_2:76293950-76293969 | None:intergenic | 50.0% | |
| CACTTGTGCCCTAAGCCCAT+AGG | - | chr1_2:76293582-76293601 | None:intergenic | 55.0% | |
| GGTGGCTGCTCGAGTTCTTC+TGG | + | chr1_2:76292500-76292519 | Msa0093540:CDS | 60.0% | |
| TGGCTCCGCCCCTGATTGTA+CGG | + | chr1_2:76293509-76293528 | Msa0093540:intron | 60.0% | |
| GGAAGGATCCGTGAGCGATG+TGG | + | chr1_2:76294344-76294363 | Msa0093540:CDS | 60.0% | |
| CAGGGGCGGAGCCACACATA+AGG | - | chr1_2:76293503-76293522 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 76291815 | 76294482 | 76291815 | ID=Msa0093540;Name=Msa0093540 |
| chr1_2 | mRNA | 76291815 | 76294482 | 76291815 | ID=Msa0093540-mRNA-1;Parent=Msa0093540;Name=Msa0093540-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.5|0.33|1|1|1|3|24|217 |
| chr1_2 | exon | 76291815 | 76291952 | 76291815 | ID=Msa0093540-mRNA-1:exon:26914;Parent=Msa0093540-mRNA-1 |
| chr1_2 | exon | 76292374 | 76292712 | 76292374 | ID=Msa0093540-mRNA-1:exon:26915;Parent=Msa0093540-mRNA-1 |
| chr1_2 | exon | 76294282 | 76294482 | 76294282 | ID=Msa0093540-mRNA-1:exon:26916;Parent=Msa0093540-mRNA-1 |
| chr1_2 | CDS | 76291815 | 76291952 | 76291815 | ID=Msa0093540-mRNA-1:cds;Parent=Msa0093540-mRNA-1 |
| chr1_2 | CDS | 76292374 | 76292712 | 76292374 | ID=Msa0093540-mRNA-1:cds;Parent=Msa0093540-mRNA-1 |
| chr1_2 | CDS | 76294282 | 76294458 | 76294282 | ID=Msa0093540-mRNA-1:cds;Parent=Msa0093540-mRNA-1 |
| chr1_2 | three_prime_UTR | 76294459 | 76294482 | 76294459 | ID=Msa0093540-mRNA-1:three_prime_utr;Parent=Msa0093540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
