AlfalfaGEDB | Msa0093760

M. sativa cultivar zhongmu-4 / Msa0093760

KEGG: K04718
GO: GO:0000166 GO:0000287 GO:0000325 GO:0001101 GO:0001558 GO:0001727 GO:0001932 GO:0001934 GO:0001959 GO:0003376 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004888 GO:0004930 GO:0005488 GO:0005515 GO:0005516 GO:0005524 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0006066 GO:0006355 GO:0006457 GO:0006629 GO:0006643 GO:0006665 GO:0006670 GO:0006793 GO:0006796 GO:0006807 GO:0006937 GO:0006940 GO:0007154 GO:0007165 GO:0007186 GO:0007275 GO:0007346 GO:0008144 GO:0008150 GO:0008152 GO:0008284 GO:0008289 GO:0008481 GO:0008610 GO:0009056 GO:0009058 GO:0009705 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009845 GO:0009889 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0010799 GO:0010800 GO:0010803 GO:0010941 GO:0016020 GO:0016042 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017050 GO:0017076 GO:0019219 GO:0019220 GO:0019222 GO:0019722 GO:0019751 GO:0019899 GO:0019902 GO:0019903 GO:0019932 GO:0022603 GO:0023051 GO:0023052 GO:0023056 GO:0030148 GO:0030149 GO:0030258 GO:0030307 GO:0030334 GO:0030335 GO:0030554 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032870 GO:0032879 GO:0033993 GO:0034311 GO:0034312 GO:0034641 GO:0035556 GO:0035639 GO:0036094 GO:0038023 GO:0038036 GO:0040008 GO:0040012 GO:0040017 GO:0042127 GO:0042221 GO:0042325 GO:0042327 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044057 GO:0044093 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045125 GO:0045765 GO:0045766 GO:0045787 GO:0045927 GO:0045931 GO:0045933 GO:0045937 GO:0045987 GO:0046165 GO:0046173 GO:0046466 GO:0046467 GO:0046512 GO:0046519 GO:0046520 GO:0046521 GO:0046834 GO:0046872 GO:0048145 GO:0048146 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051090 GO:0051091 GO:0051092 GO:0051094 GO:0051128 GO:0051171 GO:0051173 GO:0051174 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051270 GO:0051272 GO:0051716 GO:0051721 GO:0051726 GO:0060089 GO:0060255 GO:0060548 GO:0060759 GO:0065007 GO:0065009 GO:0070300 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0080090 GO:0090257 GO:0090351 GO:0090520 GO:0097159 GO:0097164 GO:0097305 GO:0097306 GO:0097367 GO:0098588 GO:0098805 GO:1901222 GO:1901224 GO:1901265 GO:1901342 GO:1901363 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901615 GO:1901617 GO:1901700 GO:1901701 GO:1902531 GO:1902533 GO:1903320 GO:1903322 GO:1903506 GO:1904018 GO:2000026 GO:2000112 GO:2000145 GO:2000147 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0093760	XP_020220231.1	90.526	95	9	0	91	185	184	278	3.83e-49	174

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0093760	sp\|P51139\|MSK3_MEDSA	91.781	73	6	0	189	261	239	311	6.71e-40	145

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0093760	A0A072V3V9	92.632	95	7	0	91	185	381	475	9.75e-49	177

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0093760	MtrunA17_Chr2g0281181	92.632	95	7	91	185	381	475	1.88e-52	177
Msa0093760	MtrunA17_Chr7g0228891	86.364	88	12	1	88	1	88	5.20e-48	160
Msa0093760	MtrunA17_Chr7g0270371	91.781	73	6	189	261	240	312	4.17e-41	145
Msa0093760	MtrunA17_Chr1g0194201	89.041	73	8	189	261	240	312	3.99e-40	143
Msa0093760	MtrunA17_Chr7g0246591	86.301	73	10	189	261	306	378	2.12e-39	142
Msa0093760	MtrunA17_Chr1g0193081	87.671	73	9	189	261	240	312	3.20e-39	140
Msa0093760	MtrunA17_Chr2g0277011	87.671	73	9	189	261	255	327	7.20e-39	140
Msa0093760	MtrunA17_Chr3g0110351	72.727	88	24	1	88	1	88	6.87e-38	135
Msa0093760	MtrunA17_Chr5g0434571	72.727	88	24	1	88	37	124	1.05e-37	135
Msa0093760	MtrunA17_Chr2g0320011	86.301	73	10	189	261	253	325	1.26e-37	137

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0093760	AT5G14340.1	76.136	88	21	1	88	13	100	4.71e-43	147
Msa0093760	AT4G21540.2	66.346	104	35	91	194	172	275	8.39e-43	147
Msa0093760	AT4G21540.1	66.346	104	35	91	194	382	485	7.58e-41	147
Msa0093760	AT5G14640.1	90.411	73	7	189	261	239	311	2.81e-40	144
Msa0093760	AT5G14640.2	90.411	73	7	189	261	239	311	2.81e-40	144
Msa0093760	AT3G05840.2	89.041	73	8	189	261	238	310	6.79e-40	143
Msa0093760	AT3G05840.1	89.041	73	8	189	261	238	310	6.79e-40	143
Msa0093760	AT4G21534.1	66.346	104	35	91	194	377	480	6.79e-40	144
Msa0093760	AT4G21534.2	66.346	104	35	91	194	377	480	6.79e-40	144
Msa0093760	AT5G26751.1	89.041	73	8	189	261	234	306	9.01e-40	142

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Find 77 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAACCTTATCACAACA+TGG	0.641918	1_2:-76698784	None:intergenic
AAAGCTTTCAGATTGGAACT+TGG	0.531075	1_2:+76700425	Msa0093760:CDS
AAAGGTGAAAGCTTTCAGAT+TGG	0.471295	1_2:+76700418	Msa0093760:intron
AAATATTTACCTGCAAGTTT+AGG	0.328128	1_2:-76698892	None:intergenic
AAATCTTTGTAGGTTAATCA+AGG	0.473313	1_2:+76701958	Msa0093760:three_prime_UTR
AACCTACAAGTGTGAGCAGA+AGG	0.550765	1_2:+76700520	Msa0093760:CDS
AACTCGTATCGAAGAATATA+TGG	0.335841	1_2:+76702047	Msa0093760:three_prime_UTR
AAGACAACCATGTTGTGATA+AGG	0.590627	1_2:+76698777	Msa0093760:CDS
AAGCCACCTCTCTTAAGGTC+TGG	0.512429	1_2:-76699060	None:intergenic
AATGATGTCAGAGCTGAATA+AGG	0.325937	1_2:+76700236	Msa0093760:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACACTGAATCCCAATTATTA+AGG	-	chr1_2:76698861-76698880	None:intergenic	30.0%
TAATAATTGGGATTCAGTGT+TGG	+	chr1_2:76698861-76698880	Msa0093760:CDS	30.0%
TTTAGGAGGAATTTCATGTT+TGG	+	chr1_2:76699158-76699177	Msa0093760:intron	30.0%
TTAGGAGGAATTTCATGTTT+GGG	+	chr1_2:76699159-76699178	Msa0093760:intron	30.0%
AAAACAGTTCCATTAACAAC+AGG	-	chr1_2:76699514-76699533	None:intergenic	30.0%
GAGAAATGCACATATTAGAT+TGG	-	chr1_2:76699543-76699562	None:intergenic	30.0%
CTAACCTTGCAATCAATATT+TGG	-	chr1_2:76699598-76699617	None:intergenic	30.0%
TAACTTGAGAACATTTCACA+TGG	+	chr1_2:76699630-76699649	Msa0093760:intron	30.0%
ATATGAGTATGTACGTTAGA+AGG	-	chr1_2:76699753-76699772	None:intergenic	30.0%
TATCACAATGTATATCAGAC+TGG	+	chr1_2:76699770-76699789	Msa0093760:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	76698746	76702210	76698746	ID=Msa0093760;Name=Msa0093760
chr1_2	mRNA	76698746	76702210	76698746	ID=Msa0093760-mRNA-1;Parent=Msa0093760;Name=Msa0093760-mRNA-1;_AED=0.30;_eAED=0.30;_QI=26\|0.37\|0.22\|0.66\|0.5\|0.66\|9\|260\|262
chr1_2	exon	76698746	76698904	76698746	ID=Msa0093760-mRNA-1:exon:27111;Parent=Msa0093760-mRNA-1
chr1_2	exon	76699007	76699136	76699007	ID=Msa0093760-mRNA-1:exon:27112;Parent=Msa0093760-mRNA-1
chr1_2	exon	76699788	76699794	76699788	ID=Msa0093760-mRNA-1:exon:27113;Parent=Msa0093760-mRNA-1
chr1_2	exon	76700174	76700296	76700174	ID=Msa0093760-mRNA-1:exon:27114;Parent=Msa0093760-mRNA-1
chr1_2	exon	76700422	76700584	76700422	ID=Msa0093760-mRNA-1:exon:27115;Parent=Msa0093760-mRNA-1
chr1_2	exon	76700829	76700835	76700829	ID=Msa0093760-mRNA-1:exon:27116;Parent=Msa0093760-mRNA-1
chr1_2	exon	76701484	76701586	76701484	ID=Msa0093760-mRNA-1:exon:27117;Parent=Msa0093760-mRNA-1
chr1_2	exon	76701674	76701724	76701674	ID=Msa0093760-mRNA-1:exon:27118;Parent=Msa0093760-mRNA-1
chr1_2	exon	76701879	76702210	76701879	ID=Msa0093760-mRNA-1:exon:27119;Parent=Msa0093760-mRNA-1
chr1_2	five_prime_UTR	76698746	76698771	76698746	ID=Msa0093760-mRNA-1:five_prime_utr;Parent=Msa0093760-mRNA-1
chr1_2	CDS	76698772	76698904	76698772	ID=Msa0093760-mRNA-1:cds;Parent=Msa0093760-mRNA-1
chr1_2	CDS	76699007	76699136	76699007	ID=Msa0093760-mRNA-1:cds;Parent=Msa0093760-mRNA-1
chr1_2	CDS	76699788	76699794	76699788	ID=Msa0093760-mRNA-1:cds;Parent=Msa0093760-mRNA-1
chr1_2	CDS	76700174	76700296	76700174	ID=Msa0093760-mRNA-1:cds;Parent=Msa0093760-mRNA-1
chr1_2	CDS	76700422	76700584	76700422	ID=Msa0093760-mRNA-1:cds;Parent=Msa0093760-mRNA-1
chr1_2	CDS	76700829	76700835	76700829	ID=Msa0093760-mRNA-1:cds;Parent=Msa0093760-mRNA-1
chr1_2	CDS	76701484	76701586	76701484	ID=Msa0093760-mRNA-1:cds;Parent=Msa0093760-mRNA-1
chr1_2	CDS	76701674	76701724	76701674	ID=Msa0093760-mRNA-1:cds;Parent=Msa0093760-mRNA-1
chr1_2	CDS	76701879	76701950	76701879	ID=Msa0093760-mRNA-1:cds;Parent=Msa0093760-mRNA-1
chr1_2	three_prime_UTR	76701951	76702210	76701951	ID=Msa0093760-mRNA-1:three_prime_utr;Parent=Msa0093760-mRNA-1

Gene Sequence

>Msa0093760

ATGGGAAGACAACCATGTTGTGATAAGGTTGGTTTGAAGAGAGGACCATGGACTATTGAAGAAGATCACAAGCTTGTGAACTTTATCCTTAATAATTGGGATTCAGTGTTGGAGAATGTTCCTAAACTTGCAGGTCTTCTAAGATGTGGAAAGAGTAGTACATTGAGATGGATTAATTATTTGAGGCCAGACCTTAAGAGAGGTGGCTTTATTGAAATGGAAGAGGATCAAATTATACAACTACATGCCCATCTTGGTAACAGACTGGATTTCTCTGATGGTTATCTGGACTTGATCATTACGAAGAATTGCCCGAAGTTACGTTTGTTGTCAATGATGTCAGAGCTGAATAAGGGAGGGCACGTGAAATCTCCGTATGTCACGTACCTAAAGGTGAAAGCTTTCAGATTGGAACTTGGTACACGCACCAAGGACCTAGAAAAGGAAGGGATCATAGATTCAGATGGTGAGGTTTTGACAAGAGGGAGAAGAACCTACAAGTGTGAGCAGAAGGCTTTGATGGCCTATGATAAATTGCAGATAACAGTGGATCAAGTGAGAGGGTACTATAGAGCTCCTGAGCCTATATTCGGTGCAACTGAGTACACCACAGTCATTGACATCTGGTCAGCTGGTTGCGTACTTGGTGAACTTTTGCTTGGCCAACCACTGTTTCCTGGTGAGAGTGGAGTAGACCAACTTGTGGAAATTATCAAGGTTTTAGGTACTCCAACAAGGGAAGAAATCAAGTGCATGAATCCTAATTATACTAGGTATAATTATATATAA

Protein sequence

>Msa0093760

MGRQPCCDKVGLKRGPWTIEEDHKLVNFILNNWDSVLENVPKLAGLLRCGKSSTLRWINYLRPDLKRGGFIEMEEDQIIQLHAHLGNRLDFSDGYLDLIITKNCPKLRLLSMMSELNKGGHVKSPYVTYLKVKAFRLELGTRTKDLEKEGIIDSDGEVLTRGRRTYKCEQKALMAYDKLQITVDQVRGYYRAPEPIFGATEYTTVIDIWSAGCVLGELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTRYNYI*