AlfalfaGEDB | Msa0093910

M. sativa cultivar zhongmu-4 / Msa0093910

KEGG: K04454|K09260|K12412
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009960 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0093910	XP_013465623.1	94.857	175	9	0	1	175	1	175	2.45e-118	346

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0093910	sp\|Q9FKK2\|AGL62_ARATH	38.608	158	90	2	8	158	3	160	1.04e-28	114

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0093910	A0A072VC91	94.857	175	9	0	1	175	1	175	1.17e-118	346

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TFs/TRs:

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Gene ID	Type	Classification
Msa0093910	TF	MADS-M-type

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0093910	MtrunA17_Chr2g0333981	94.857	175	9	0	1	175	1	175	2.25e-122	346
Msa0093910	MtrunA17_Chr4g0071601	83.243	185	21	2	1	175	1	185	1.59e-98	286
Msa0093910	MtrunA17_Chr8g0379021	71.257	167	48	0	1	167	1	167	2.89e-84	250
Msa0093910	MtrunA17_Chr4g0018951	66.258	163	47	2	1	163	1	155	2.45e-65	201
Msa0093910	MtrunA17_Chr1g0149391	36.239	218	122	5	8	212	5	218	1.99e-40	140
Msa0093910	MtrunA17_Chr3g0099421	35.945	217	124	4	8	212	30	243	4.34e-40	140
Msa0093910	MtrunA17_Chr1g0206701	39.227	181	100	2	8	181	5	182	8.06e-40	138
Msa0093910	MtrunA17_Chr8g0355091	36.967	211	117	5	8	206	5	211	1.83e-39	137
Msa0093910	MtrunA17_Chr1g0206991	38.122	181	102	2	8	181	5	182	1.90e-38	133
Msa0093910	MtrunA17_Chr1g0206721	34.562	217	127	4	8	212	5	218	2.85e-38	134

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0093910	AT5G60440.1	38.608	158	90	2	8	158	3	160	1.05e-29	114
Msa0093910	AT2G24840.1	36.478	159	96	3	9	162	60	218	1.36e-26	105
Msa0093910	AT1G65360.1	36.364	165	102	2	8	169	3	167	7.78e-26	102
Msa0093910	AT1G01530.1	37.500	168	94	4	8	168	3	166	2.62e-24	98.6
Msa0093910	AT4G36590.1	35.404	161	94	3	12	162	7	167	1.90e-21	90.9
Msa0093910	AT2G34440.1	36.054	147	82	5	11	150	1	142	3.13e-21	88.6
Msa0093910	AT1G28460.1	36.095	169	93	4	8	165	4	168	7.69e-21	87.8
Msa0093910	AT3G66656.1	42.400	125	56	2	11	123	1	121	6.70e-20	85.1
Msa0093910	AT1G29962.1	34.884	172	94	5	8	165	4	171	9.36e-20	84.7
Msa0093910	AT2G42830.1	38.462	130	64	4	2	127	7	124	5.83e-19	84.0

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Find 73 sgRNAs with CRISPR-Local

Find 288 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGTAGAGTTTGTCACC+AGG	0.654743	1_2:-76977788	None:intergenic
AAACGCCACCCATGGGAAAC+AGG	0.378571	1_2:-76979859	None:intergenic
AAAGAAAGTGTGTGCGGAAC+CGG	0.421189	1_2:-76979734	None:intergenic
AAAGATGAAGCTTGTTGAAA+GGG	0.440736	1_2:+76978081	Msa0093910:CDS
AAATCCAACCATCAGAGGAA+TGG	0.487161	1_2:-76979763	None:intergenic
AACAGTAGAGTTTGTCACCA+GGG	0.615040	1_2:-76977787	None:intergenic
AACCAAAGAAAGAAGAACAT+GGG	0.647859	1_2:+76977623	Msa0093910:CDS
AATCCAACCATCAGAGGAAT+GGG	0.448592	1_2:-76979762	None:intergenic
ACAAGCAGCGGGGTTGAATC+CGG	0.423766	1_2:-76979896	None:intergenic
ACAGTAGAGTTTGTCACCAG+GGG	0.676336	1_2:-76977786	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAACCAAAGAAAGAAGAACA+TGG	+	chr1_2:76977622-76977641	Msa0093910:CDS	30.0%
AACCAAAGAAAGAAGAACAT+GGG	+	chr1_2:76977623-76977642	Msa0093910:CDS	30.0%
ACTTTCTCAAAAAGAAGACA+AGG	+	chr1_2:76977698-76977717	Msa0093910:CDS	30.0%
CTATTGTAATCTTTGCAAGT+CGG	-	chr1_2:76977899-76977918	None:intergenic	30.0%
TTACAATAGACAATATGAGG+AGG	+	chr1_2:76977910-76977929	Msa0093910:CDS	30.0%
TGATCAGCTTGAACAATTTA+TGG	+	chr1_2:76978042-76978061	Msa0093910:CDS	30.0%
CTTCATCTTTAACTCGTAAA+TGG	-	chr1_2:76978071-76978090	None:intergenic	30.0%
TTCCTGTAAAATTATTACCG+GGG	+	chr1_2:76978364-76978383	Msa0093910:intron	30.0%
TAGAAGAACCTCTATGATAT+TGG	+	chr1_2:76978512-76978531	Msa0093910:intron	30.0%
TGAGAGGAACTATAAACAAA+TGG	+	chr1_2:76979377-76979396	Msa0093910:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	76977611	76979946	76977611	ID=Msa0093910;Name=Msa0093910
chr1_2	mRNA	76977611	76979946	76977611	ID=Msa0093910-mRNA-1;Parent=Msa0093910;Name=Msa0093910-mRNA-1;_AED=0.56;_eAED=0.56;_QI=0\|0\|0\|0.33\|1\|1\|3\|0\|278
chr1_2	exon	76977611	76978129	76977611	ID=Msa0093910-mRNA-1:exon:27189;Parent=Msa0093910-mRNA-1
chr1_2	exon	76978240	76978288	76978240	ID=Msa0093910-mRNA-1:exon:27190;Parent=Msa0093910-mRNA-1
chr1_2	exon	76979678	76979946	76979678	ID=Msa0093910-mRNA-1:exon:27191;Parent=Msa0093910-mRNA-1
chr1_2	CDS	76977611	76978129	76977611	ID=Msa0093910-mRNA-1:cds;Parent=Msa0093910-mRNA-1
chr1_2	CDS	76978240	76978288	76978240	ID=Msa0093910-mRNA-1:cds;Parent=Msa0093910-mRNA-1
chr1_2	CDS	76979678	76979946	76979678	ID=Msa0093910-mRNA-1:cds;Parent=Msa0093910-mRNA-1

Gene Sequence

>Msa0093910

ATGGATATGGTTAACCAAAGAAAGAAGAACATGGGACGCCAGAAGATTGAGATCAAGAAGGTTGAGAAAGATTCCAACAAACTTGTCACTTTCTCAAAAAGAAGACAAGGTTTATTCAGAAAAGCAAGCGAACTTTGTGTTTTATGTGATGTTCATGCAGCCATCATTGTGTTTTCCCCTGGTGACAAACTCTACTGTTTTGGTCAACCCGACACTAACGTTGTCCTCAATAGCTACGTCAAAGGAACCACTGAGTTTGAGGATTCAAAGTCAACTGAAAATTTTCCGACTTGCAAAGATTACAATAGACAATATGAGGAGGCGCAAAAGACGTTGGAGATGGAAAAGAAGAAACTAGAAGATGTTCAAAATTTGGCTAAGATTTTCAACAAGGGTGATTGGTGGAATGATTCAATTGATGATATGACTAGTGATCAGCTTGAACAATTTATGGTGTCCATTTACGAGTTAAAGATGAAGCTTGTTGAAAGGGCTGATGAACTTGTCATGAAGCAAAGTGTGCTTTCAGTATGCACTTTGTATACTGCAATTGGGATTTTGCTTTATGGCTCTGGCCCTTCAAGGGAGACAGTTATGGTTCCATCCTCGAAGTATCGTCCGCTACCGGTTCCGCACACACTTTCTTTGCTCTCCCATTCCTCTGATGGTTGGATTTTTTGCGTTCACAAGCTGTCCCTCTTGCATTCGGCTTTCAAGTTTCCAAATTACCGGAGGACTTCAGGACCTTTCCTGTTTCCCATGGGTGGCGTTTCGTCCCGCTGGGGTCCGGATTCAACCCCGCTGCTTGTTCCTAGGAATCTGACATTGTTAACTTGA

Protein sequence

>Msa0093910

MDMVNQRKKNMGRQKIEIKKVEKDSNKLVTFSKRRQGLFRKASELCVLCDVHAAIIVFSPGDKLYCFGQPDTNVVLNSYVKGTTEFEDSKSTENFPTCKDYNRQYEEAQKTLEMEKKKLEDVQNLAKIFNKGDWWNDSIDDMTSDQLEQFMVSIYELKMKLVERADELVMKQSVLSVCTLYTAIGILLYGSGPSRETVMVPSSKYRPLPVPHTLSLLSHSSDGWIFCVHKLSLLHSAFKFPNYRRTSGPFLFPMGGVSSRWGPDSTPLLVPRNLTLLT*