AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0093910

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0093910 MtrunA17_Chr2g0333981 94.857 175 9 0 1 175 1 175 2.25e-122 346
Msa0093910 MtrunA17_Chr4g0071601 83.243 185 21 2 1 175 1 185 1.59e-98 286
Msa0093910 MtrunA17_Chr8g0379021 71.257 167 48 0 1 167 1 167 2.89e-84 250
Msa0093910 MtrunA17_Chr4g0018951 66.258 163 47 2 1 163 1 155 2.45e-65 201
Msa0093910 MtrunA17_Chr1g0149391 36.239 218 122 5 8 212 5 218 1.99e-40 140
Msa0093910 MtrunA17_Chr3g0099421 35.945 217 124 4 8 212 30 243 4.34e-40 140
Msa0093910 MtrunA17_Chr1g0206701 39.227 181 100 2 8 181 5 182 8.06e-40 138
Msa0093910 MtrunA17_Chr8g0355091 36.967 211 117 5 8 206 5 211 1.83e-39 137
Msa0093910 MtrunA17_Chr1g0206991 38.122 181 102 2 8 181 5 182 1.90e-38 133
Msa0093910 MtrunA17_Chr1g0206721 34.562 217 127 4 8 212 5 218 2.85e-38 134
Msa0093910 MtrunA17_Chr2g0292791 34.562 217 127 5 8 212 5 218 4.41e-37 131
Msa0093910 MtrunA17_Chr3g0089141 34.783 230 130 5 8 229 5 222 1.63e-35 127
Msa0093910 MtrunA17_Chr1g0208561 40.606 165 88 2 8 165 5 166 3.08e-35 126
Msa0093910 MtrunA17_Chr3g0085241 37.500 192 109 3 7 191 36 223 3.61e-35 127
Msa0093910 MtrunA17_Chr3g0119901 36.508 189 112 2 6 186 3 191 6.72e-35 125
Msa0093910 MtrunA17_Chr2g0325971 40.606 165 88 2 8 165 5 166 1.37e-33 122
Msa0093910 MtrunA17_Chr1g0208581 38.788 165 91 2 8 165 5 166 1.92e-33 121
Msa0093910 MtrunA17_Chr1g0206691 32.057 209 125 5 21 216 1 205 6.54e-32 117
Msa0093910 MtrunA17_Chr1g0188671 37.870 169 95 2 8 169 43 208 4.12e-30 114
Msa0093910 MtrunA17_Chr3g0099411 42.400 125 62 2 8 125 5 126 2.57e-29 110
Msa0093910 MtrunA17_Chr5g0422421 31.507 219 131 4 8 212 5 218 2.79e-29 111
Msa0093910 MtrunA17_Chr1g0187361 34.409 186 110 2 8 185 5 186 2.85e-29 111
Msa0093910 MtrunA17_Chr2g0300441 30.131 229 145 4 8 224 5 230 6.20e-29 110
Msa0093910 MtrunA17_Chr2g0317451 32.796 186 113 3 8 185 5 186 1.08e-28 109
Msa0093910 MtrunA17_Chr2g0317481 32.796 186 113 3 8 185 5 186 1.20e-28 109
Msa0093910 MtrunA17_Chr5g0419601 35.088 171 101 2 8 171 5 172 1.55e-28 109
Msa0093910 MtrunA17_Chr5g0422941 28.899 218 146 3 8 216 5 222 3.80e-26 102
Msa0093910 MtrunA17_Chr4g0074101 36.517 178 107 4 11 183 1 177 1.77e-24 97.4
Msa0093910 MtrunA17_Chr2g0300421 40.945 127 65 2 8 127 5 128 2.63e-24 96.3
Msa0093910 MtrunA17_Chr7g0238991 31.343 201 121 5 29 216 38 234 1.47e-22 93.6
Msa0093910 MtrunA17_Chr1g0169761 46.809 94 48 1 11 102 1 94 1.82e-22 91.7
Msa0093910 MtrunA17_Chr8g0345001 36.585 164 89 4 5 161 15 170 1.98e-22 91.7
Msa0093910 MtrunA17_Chr8g0376821 41.964 112 63 1 11 120 1 112 2.43e-22 91.3
Msa0093910 MtrunA17_Chr8g0356071 35.878 131 81 2 11 139 1 130 1.13e-21 89.0
Msa0093910 MtrunA17_Chr3g0089151 38.931 131 68 4 8 130 5 131 2.35e-20 84.7
Msa0093910 MtrunA17_Chr1g0175611 38.525 122 73 1 11 130 1 122 2.42e-20 85.5
Msa0093910 MtrunA17_Chr1g0180591 48.810 84 41 1 11 94 1 82 1.44e-19 84.0
Msa0093910 MtrunA17_Chr1g0175601 32.778 180 100 5 11 176 1 173 1.47e-19 84.0
Msa0093910 MtrunA17_Chr8g0357771 41.414 99 56 1 11 107 1 99 4.73e-19 82.4
Msa0093910 MtrunA17_Chr3g0093131 36.957 138 82 3 29 161 36 173 4.89e-19 82.8
Msa0093910 MtrunA17_Chr4g0052061 43.478 92 49 1 11 102 1 89 1.50e-18 80.5
Msa0093910 MtrunA17_Chr4g0052081 41.000 100 52 2 11 104 1 99 2.22e-18 80.5
Msa0093910 MtrunA17_Chr3g0097101 36.364 121 67 3 8 127 13 124 5.12e-18 81.3
Msa0093910 MtrunA17_Chr3g0111841 52.542 59 28 0 18 76 2 60 3.09e-17 74.3
Msa0093910 MtrunA17_Chr1g0187351 50.000 64 32 0 21 84 1 64 8.18e-17 73.2
Msa0093910 MtrunA17_Chr3g0142191 36.076 158 80 7 11 162 1 143 1.16e-16 77.0
Msa0093910 MtrunA17_Chr3g0077501 46.667 75 40 0 11 85 1 75 2.29e-16 76.3
Msa0093910 MtrunA17_Chr8g0351051 49.296 71 36 0 11 81 1 71 2.77e-16 76.6
Msa0093910 MtrunA17_Chr8g0380021 44.828 87 47 1 6 92 13 98 2.93e-16 76.3
Msa0093910 MtrunA17_Chr1g0173161 61.404 57 22 0 11 67 1 57 3.38e-16 72.0
Msa0093910 MtrunA17_Chr4g0020221 46.835 79 42 0 11 89 1 79 6.34e-16 75.5
Msa0093910 MtrunA17_Chr1g0159661 29.189 185 116 4 11 192 1 173 8.74e-16 73.6
Msa0093910 MtrunA17_Chr3g0134451 35.417 144 69 6 11 133 1 141 8.92e-16 75.9
Msa0093910 MtrunA17_Chr3g0111831 48.485 66 34 0 19 84 11 76 9.37e-16 70.9
Msa0093910 MtrunA17_Chr2g0284911 31.928 166 94 6 6 169 13 161 1.29e-15 74.7
Msa0093910 MtrunA17_Chr1g0204111 33.735 166 100 4 6 168 12 170 1.40e-15 74.7
Msa0093910 MtrunA17_Chr5g0425191 57.407 54 23 0 11 64 1 54 2.29e-15 70.5
Msa0093910 MtrunA17_Chr5g0412461 35.833 120 73 2 11 126 1 120 3.55e-15 72.8
Msa0093910 MtrunA17_Chr5g0427401 43.478 69 39 0 11 79 1 69 3.95e-15 72.8
Msa0093910 MtrunA17_Chr4g0044071 53.448 58 27 0 11 68 1 58 4.05e-15 70.1
Msa0093910 MtrunA17_Chr4g0061671 40.000 95 55 2 11 103 1 95 4.40e-15 72.0
Msa0093910 MtrunA17_Chr5g0404951 39.604 101 54 2 11 104 1 101 4.65e-15 72.8
Msa0093910 MtrunA17_Chr3g0125241 41.333 75 42 1 11 83 26 100 7.76e-15 71.6
Msa0093910 MtrunA17_Chr2g0308251 56.364 55 24 0 11 65 1 55 8.15e-15 68.6
Msa0093910 MtrunA17_Chr4g0049901 33.533 167 99 4 11 167 27 191 1.12e-14 71.6
Msa0093910 MtrunA17_Chr2g0279821 44.000 75 42 0 11 85 1 75 1.22e-14 71.6
Msa0093910 MtrunA17_Chr5g0427921 48.276 58 30 0 11 68 1 58 1.46e-14 67.0
Msa0093910 MtrunA17_Chr8g0377561 54.386 57 26 0 11 67 1 57 1.55e-14 68.2
Msa0093910 MtrunA17_Chr6g0474371 45.714 70 37 1 11 79 1 70 2.05e-14 70.1
Msa0093910 MtrunA17_Chr4g0049541 45.070 71 39 0 11 81 1 71 2.08e-14 70.9
Msa0093910 MtrunA17_Chr7g0220111 54.386 57 26 0 11 67 1 57 2.45e-14 70.9
Msa0093910 MtrunA17_Chr5g0412271 46.377 69 37 0 11 79 1 69 2.53e-14 70.5
Msa0093910 MtrunA17_Chr6g0455511 48.611 72 36 1 11 81 1 72 2.71e-14 70.9
Msa0093910 MtrunA17_Chr8g0351041 31.765 170 106 3 11 177 1 163 3.19e-14 68.9
Msa0093910 MtrunA17_Chr3g0122251 56.140 57 25 0 11 67 1 57 3.22e-14 70.5
Msa0093910 MtrunA17_Chr4g0057151 49.275 69 35 0 11 79 1 69 3.74e-14 69.7
Msa0093910 MtrunA17_Chr5g0420091 52.632 57 27 0 11 67 1 57 4.03e-14 69.7
Msa0093910 MtrunA17_Chr7g0246381 53.448 58 27 0 11 68 1 58 4.82e-14 65.9
Msa0093910 MtrunA17_Chr7g0246431 45.205 73 40 0 11 83 1 73 6.44e-14 69.3
Msa0093910 MtrunA17_Chr2g0302091 36.025 161 87 4 5 161 35 183 9.82e-14 68.6
Msa0093910 MtrunA17_Chr8g0351031 54.386 57 26 0 11 67 1 57 1.44e-13 68.6
Msa0093910 MtrunA17_Chr1g0164791 44.000 75 40 1 11 83 1 75 2.07e-13 68.2
Msa0093910 MtrunA17_Chr4g0061691 44.286 70 38 1 11 79 1 70 2.33e-13 67.8
Msa0093910 MtrunA17_Chr8g0366231 50.000 58 29 0 11 68 1 58 3.21e-13 67.8
Msa0093910 MtrunA17_Chr5g0411691 42.029 69 40 0 11 79 1 69 3.67e-13 67.4
Msa0093910 MtrunA17_Chr5g0420081 49.123 57 29 0 11 67 1 57 4.50e-13 67.4
Msa0093910 MtrunA17_Chr4g0018421 27.389 157 104 3 11 164 1 150 1.29e-12 65.5
Msa0093910 MtrunA17_Chr1g0166611 39.175 97 54 2 25 120 19 111 1.51e-12 63.5
Msa0093910 MtrunA17_Chr7g0220121 41.429 70 40 1 11 79 1 70 5.44e-12 64.3
Msa0093910 MtrunA17_Chr3g0111931 46.429 56 30 0 25 80 3 58 7.28e-12 60.8
Msa0093910 MtrunA17_Chr5g0417661 45.283 53 29 0 11 63 56 108 1.41e-11 60.8
Msa0093910 MtrunA17_Chr4g0060841 50.943 53 26 0 11 63 1 53 2.86e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0093910 AT5G60440.1 38.608 158 90 2 8 158 3 160 1.05e-29 114
Msa0093910 AT2G24840.1 36.478 159 96 3 9 162 60 218 1.36e-26 105
Msa0093910 AT1G65360.1 36.364 165 102 2 8 169 3 167 7.78e-26 102
Msa0093910 AT1G01530.1 37.500 168 94 4 8 168 3 166 2.62e-24 98.6
Msa0093910 AT4G36590.1 35.404 161 94 3 12 162 7 167 1.90e-21 90.9
Msa0093910 AT2G34440.1 36.054 147 82 5 11 150 1 142 3.13e-21 88.6
Msa0093910 AT1G28460.1 36.095 169 93 4 8 165 4 168 7.69e-21 87.8
Msa0093910 AT3G66656.1 42.400 125 56 2 11 123 1 121 6.70e-20 85.1
Msa0093910 AT1G29962.1 34.884 172 94 5 8 165 4 171 9.36e-20 84.7
Msa0093910 AT2G42830.1 38.462 130 64 4 2 127 7 124 5.83e-19 84.0
Msa0093910 AT2G42830.2 38.462 130 64 4 2 127 7 124 6.21e-19 84.0
Msa0093910 AT5G10140.2 36.585 164 73 7 11 163 1 144 1.42e-18 81.3
Msa0093910 AT5G10140.4 36.310 168 76 7 11 167 1 148 1.67e-18 81.3
Msa0093910 AT5G10140.1 43.299 97 52 2 11 106 1 95 2.59e-18 81.3
Msa0093910 AT5G10140.3 36.585 164 73 7 11 163 1 144 3.40e-18 80.9
Msa0093910 AT4G09960.2 33.094 139 80 4 11 149 1 126 7.77e-18 80.5
Msa0093910 AT3G58780.4 39.167 120 57 4 9 124 14 121 8.30e-18 81.6
Msa0093910 AT4G09960.5 33.094 139 80 4 11 149 11 136 9.23e-18 80.9
Msa0093910 AT4G09960.6 33.094 139 80 4 11 149 2 127 9.79e-18 80.5
Msa0093910 AT4G09960.1 33.094 139 80 4 11 149 1 126 9.92e-18 80.5
Msa0093910 AT3G58780.5 39.167 120 57 4 9 124 20 127 1.08e-17 80.9
Msa0093910 AT3G58780.1 39.167 120 57 4 9 124 14 121 1.10e-17 80.9
Msa0093910 AT5G20240.2 41.525 118 64 4 11 125 1 116 1.24e-17 78.2
Msa0093910 AT4G09960.3 33.094 139 80 4 11 149 27 152 1.56e-17 80.5
Msa0093910 AT1G28450.1 34.118 170 94 5 8 163 4 169 1.73e-17 79.0
Msa0093910 AT3G04100.1 30.435 161 100 3 8 158 10 168 3.33e-17 78.6
Msa0093910 AT5G20240.1 40.678 118 65 4 11 125 1 116 3.40e-17 78.6
Msa0093910 AT3G57230.2 42.353 85 47 1 11 93 1 85 9.93e-17 75.5
Msa0093910 AT5G62165.14 46.835 79 42 0 11 89 1 79 1.38e-16 74.3
Msa0093910 AT3G57390.3 31.053 190 121 5 11 193 1 187 1.85e-16 77.0
Msa0093910 AT4G09960.4 33.094 139 80 4 11 149 96 221 2.16e-16 78.2
Msa0093910 AT5G62165.6 46.835 79 42 0 11 89 1 79 2.61e-16 74.7
Msa0093910 AT5G62165.9 46.835 79 42 0 11 89 1 79 2.61e-16 74.7
Msa0093910 AT5G62165.7 46.835 79 42 0 11 89 1 79 2.61e-16 74.7
Msa0093910 AT5G62165.8 46.835 79 42 0 11 89 1 79 2.61e-16 74.7
Msa0093910 AT5G62165.13 46.835 79 42 0 11 89 1 79 2.61e-16 74.7
Msa0093910 AT5G62165.17 46.835 79 42 0 11 89 1 79 2.89e-16 74.7
Msa0093910 AT5G62165.12 46.835 79 42 0 11 89 1 79 2.89e-16 74.7
Msa0093910 AT5G62165.11 46.835 79 42 0 11 89 1 79 2.89e-16 74.7
Msa0093910 AT1G77950.3 49.296 71 35 1 11 80 1 71 2.93e-16 76.6
Msa0093910 AT1G77950.2 49.296 71 35 1 11 80 1 71 2.93e-16 76.6
Msa0093910 AT1G77950.1 49.296 71 35 1 11 80 1 71 2.93e-16 76.6
Msa0093910 AT1G77950.4 49.296 71 35 1 11 80 1 71 2.93e-16 76.6
Msa0093910 AT3G57390.1 31.053 190 121 5 11 193 1 187 3.17e-16 76.6
Msa0093910 AT3G58780.2 38.136 118 54 4 9 124 14 114 3.46e-16 76.3
Msa0093910 AT4G22950.2 37.273 110 68 1 11 119 1 110 3.97e-16 74.7
Msa0093910 AT5G51870.5 46.835 79 42 0 8 86 21 99 4.48e-16 75.1
Msa0093910 AT3G54340.1 53.226 62 29 0 11 72 1 62 4.96e-16 75.9
Msa0093910 AT1G72350.1 50.000 70 33 1 12 81 43 110 5.00e-16 75.5
Msa0093910 AT1G77980.1 49.296 71 35 1 11 80 1 71 6.07e-16 77.0
Msa0093910 AT4G22950.3 37.273 110 68 1 11 119 1 110 6.21e-16 75.1
Msa0093910 AT4G22950.1 37.273 110 68 1 11 119 1 110 6.21e-16 75.1
Msa0093910 AT3G57230.1 42.353 85 47 1 11 93 1 85 6.46e-16 75.5
Msa0093910 AT3G57230.4 42.353 85 47 1 11 93 1 85 6.46e-16 75.5
Msa0093910 AT5G51860.2 47.368 76 40 0 11 86 1 76 6.53e-16 74.7
Msa0093910 AT1G22130.1 56.897 58 25 0 11 68 1 58 6.85e-16 77.0
Msa0093910 AT5G51860.1 47.368 76 40 0 11 86 1 76 9.40e-16 74.7
Msa0093910 AT5G62165.10 46.835 79 42 0 11 89 1 79 9.66e-16 74.3
Msa0093910 AT5G62165.4 46.835 79 42 0 11 89 1 79 9.66e-16 74.3
Msa0093910 AT5G62165.3 46.835 79 42 0 11 89 1 79 1.16e-15 74.3
Msa0093910 AT5G62165.1 46.835 79 42 0 11 89 1 79 1.16e-15 74.3
Msa0093910 AT5G62165.2 46.835 79 42 0 11 89 1 79 1.16e-15 74.3
Msa0093910 AT5G51870.2 47.368 76 40 0 11 86 1 76 1.58e-15 73.2
Msa0093910 AT4G18960.1 44.792 96 43 2 12 105 18 105 1.63e-15 74.7
Msa0093910 AT5G13790.2 44.706 85 45 1 11 95 1 83 1.81e-15 75.1
Msa0093910 AT4G24540.1 31.953 169 97 4 11 167 1 163 1.89e-15 73.9
Msa0093910 AT5G51870.1 47.368 76 40 0 11 86 1 76 2.08e-15 73.6
Msa0093910 AT5G13790.1 50.725 69 34 0 11 79 1 69 2.11e-15 74.7
Msa0093910 AT2G45650.1 49.275 69 35 0 11 79 1 69 2.64e-15 74.3
Msa0093910 AT2G45660.2 38.793 116 59 3 11 119 1 111 2.75e-15 72.0
Msa0093910 AT4G37940.3 44.000 75 42 0 11 85 1 75 3.10e-15 72.4
Msa0093910 AT4G37940.4 44.000 75 42 0 11 85 1 75 3.37e-15 73.2
Msa0093910 AT4G37940.1 44.000 75 42 0 11 85 1 75 3.61e-15 73.2
Msa0093910 AT5G51870.4 47.368 76 40 0 11 86 1 76 4.18e-15 73.2
Msa0093910 AT5G23260.1 46.753 77 39 1 6 80 12 88 4.58e-15 73.6
Msa0093910 AT5G51870.3 47.368 76 40 0 11 86 11 86 4.76e-15 73.2
Msa0093910 AT5G23260.4 46.753 77 39 1 6 80 12 88 4.78e-15 73.6
Msa0093910 AT2G45660.1 38.793 116 59 3 11 119 1 111 7.82e-15 72.0
Msa0093910 AT3G58780.3 34.307 137 65 4 9 124 14 146 8.96e-15 73.2
Msa0093910 AT5G23260.3 30.380 158 93 4 11 163 1 146 1.28e-14 72.0
Msa0093910 AT2G22540.3 47.826 69 36 0 11 79 1 69 1.37e-14 72.0
Msa0093910 AT2G22540.1 47.826 69 36 0 11 79 1 69 1.37e-14 72.0
Msa0093910 AT3G61120.1 40.476 84 50 0 11 94 1 84 1.57e-14 72.0
Msa0093910 AT2G22630.1 48.000 75 31 1 11 85 1 67 1.79e-14 71.2
Msa0093910 AT2G22630.2 48.000 75 31 1 11 85 1 67 1.79e-14 71.2
Msa0093910 AT5G23260.2 32.727 165 91 5 11 172 1 148 3.18e-14 71.2
Msa0093910 AT5G65070.4 44.286 70 38 1 11 79 1 70 4.44e-14 68.6
Msa0093910 AT2G03710.3 54.386 57 26 0 11 67 1 57 4.58e-14 69.3
Msa0093910 AT4G11880.2 51.613 62 30 0 11 72 1 62 4.96e-14 69.3
Msa0093910 AT4G11880.3 51.613 62 30 0 11 72 1 62 4.96e-14 69.3
Msa0093910 AT1G24260.3 54.386 57 26 0 11 67 1 57 5.30e-14 70.1
Msa0093910 AT1G24260.1 54.386 57 26 0 11 67 1 57 5.38e-14 70.5
Msa0093910 AT1G24260.2 54.386 57 26 0 11 67 1 57 5.40e-14 70.5
Msa0093910 AT2G22540.2 54.545 55 25 0 11 65 1 55 6.03e-14 70.1
Msa0093910 AT2G03710.1 54.386 57 26 0 11 67 1 57 6.18e-14 70.5
Msa0093910 AT2G03710.2 54.386 57 26 0 11 67 1 57 6.29e-14 70.5
Msa0093910 AT5G15800.1 54.386 57 26 0 11 67 1 57 6.63e-14 70.1
Msa0093910 AT5G65070.1 44.286 70 38 1 11 79 1 70 8.29e-14 68.9
Msa0093910 AT4G11880.4 55.172 58 26 0 11 68 1 58 9.16e-14 69.3
Msa0093910 AT4G11880.1 55.172 58 26 0 11 68 1 58 9.16e-14 69.3
Msa0093910 AT3G02310.2 54.386 57 26 0 11 67 1 57 1.05e-13 68.6
Msa0093910 AT5G65050.2 49.180 61 31 0 11 71 1 61 1.17e-13 68.2
Msa0093910 AT5G15800.2 54.386 57 26 0 11 67 1 57 1.24e-13 69.7
Msa0093910 AT5G65070.5 44.286 70 38 1 11 79 1 70 1.50e-13 68.6
Msa0093910 AT1G47760.1 48.485 66 34 0 11 76 1 66 1.89e-13 67.8
Msa0093910 AT5G65070.2 44.286 70 38 1 11 79 1 70 1.96e-13 68.6
Msa0093910 AT3G02310.1 54.386 57 26 0 11 67 1 57 2.04e-13 68.9
Msa0093910 AT5G65070.3 45.312 64 35 0 11 74 1 64 2.30e-13 68.6
Msa0093910 AT5G65050.3 49.180 61 31 0 11 71 1 61 3.09e-13 67.4
Msa0093910 AT5G65050.5 49.180 61 31 0 11 71 1 61 3.24e-13 67.0
Msa0093910 AT5G65050.1 35.714 112 65 3 11 121 1 106 3.25e-13 67.0
Msa0093910 AT5G65080.2 30.631 222 123 10 6 217 3 203 3.33e-13 67.4
Msa0093910 AT5G65060.1 28.899 218 121 7 11 217 1 195 4.98e-13 66.6
Msa0093910 AT5G60910.1 50.877 57 28 0 11 67 1 57 5.02e-13 67.4
Msa0093910 AT1G26310.1 50.000 58 29 0 11 68 1 58 5.32e-13 67.8
Msa0093910 AT1G69120.2 48.276 58 30 0 11 68 1 58 5.89e-13 67.4
Msa0093910 AT3G30260.1 39.241 79 47 1 11 88 1 79 6.27e-13 67.4
Msa0093910 AT5G65060.3 47.541 61 32 0 11 71 1 61 7.59e-13 66.2
Msa0093910 AT2G14210.1 48.276 58 30 0 11 68 1 58 8.06e-13 67.0
Msa0093910 AT5G65080.3 30.556 216 118 11 6 217 3 190 8.14e-13 66.2
Msa0093910 AT5G65060.2 47.541 61 32 0 11 71 1 61 9.22e-13 65.9
Msa0093910 AT2G14210.2 48.276 58 30 0 11 68 1 58 1.10e-12 66.6
Msa0093910 AT1G69120.1 48.276 58 30 0 11 68 1 58 1.40e-12 66.6
Msa0093910 AT1G71692.1 39.759 83 49 1 11 92 1 83 3.17e-12 64.7
Msa0093910 AT1G69540.1 26.519 181 111 7 11 170 1 180 6.49e-12 65.5
Msa0093910 AT1G31140.1 36.538 104 64 2 11 113 1 103 7.96e-12 63.5
Msa0093910 AT1G69540.2 26.519 181 111 7 11 170 1 180 8.97e-12 65.1
Msa0093910 AT4G37435.1 49.123 57 29 0 11 67 1 57 1.30e-11 62.8
Msa0093910 AT2G26320.1 44.262 61 34 0 8 68 14 74 8.36e-11 58.5
Msa0093910 AT1G31140.2 38.710 93 52 2 11 98 1 93 8.66e-11 60.8
Msa0093910 AT1G18750.4 43.860 57 32 0 11 67 1 57 9.16e-11 62.0

Find 73 sgRNAs with CRISPR-Local

Find 288 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATCAGCTTGAACAATTTA+TGG 0.161799 1_2:+76978042 Msa0093910:CDS
ACTAGAAGATGTTCAAAATT+TGG 0.191288 1_2:+76977964 Msa0093910:CDS
CTTCATCTTTAACTCGTAAA+TGG 0.226947 1_2:-76978068 None:intergenic
CCTGAAGTCCTCCGGTAATT+TGG 0.232240 1_2:-76979830 None:intergenic
GTCCCATGTTCTTCTTTCTT+TGG 0.246339 1_2:-76977625 None:intergenic
ATCCAATTTCACCATGGATA+TGG 0.282644 1_2:+76977598 None:intergenic
CCAAATTACCGGAGGACTTC+AGG 0.300322 1_2:+76979830 Msa0093910:CDS
CCTTCTTGATCTCAATCTTC+TGG 0.317157 1_2:-76977649 None:intergenic
TGCACTTTGTATACTGCAAT+TGG 0.317414 1_2:+76978252 Msa0093910:CDS
CTTTCAAGTTTCCAAATTAC+CGG 0.346167 1_2:+76979819 Msa0093910:CDS
TCTCAGGCTCTGGCCCTTCA+AGG 0.350448 1_2:+76979672 Msa0093910:intron
TGAGAAAGTGACAAGTTTGT+TGG 0.353316 1_2:-76977684 None:intergenic
GGTGACAAACTCTACTGTTT+TGG 0.353846 1_2:+76977791 Msa0093910:CDS
CAAGCTGTCCCTCTTGCATT+CGG 0.376999 1_2:+76979796 Msa0093910:CDS
AAACGCCACCCATGGGAAAC+AGG 0.378571 1_2:-76979859 None:intergenic
TGGGTGGCGTTTCGTCCCGC+TGG 0.379258 1_2:+76979870 Msa0093910:CDS
TTGCTCTCCCATTCCTCTGA+TGG 0.381122 1_2:+76979755 Msa0093910:CDS
AGGACCTTTCCTGTTTCCCA+TGG 0.395892 1_2:+76979850 Msa0093910:CDS
CCCTTCAAGGGAGACAGTTA+TGG 0.396196 1_2:+76979685 Msa0093910:CDS
CGTTTCGTCCCGCTGGGGTC+CGG 0.417055 1_2:+76979877 Msa0093910:CDS
GTTAACAATGTCAGATTCCT+AGG 0.418576 1_2:-76979920 None:intergenic
ACCATAACTGTCTCCCTTGA+AGG 0.419515 1_2:-76979686 None:intergenic
AAAGAAAGTGTGTGCGGAAC+CGG 0.421189 1_2:-76979734 None:intergenic
CAACCCCGCTGCTTGTTCCT+AGG 0.421937 1_2:+76979903 Msa0093910:CDS
ACAAGCAGCGGGGTTGAATC+CGG 0.423766 1_2:-76979896 None:intergenic
AAAGATGAAGCTTGTTGAAA+GGG 0.440736 1_2:+76978081 Msa0093910:CDS
GGGTGGCGTTTCGTCCCGCT+GGG 0.447029 1_2:+76979871 Msa0093910:CDS
CAAAGGAACCACTGAGTTTG+AGG 0.448124 1_2:+76977850 Msa0093910:CDS
TCTCCCATTCCTCTGATGGT+TGG 0.448287 1_2:+76979759 Msa0093910:CDS
AATCCAACCATCAGAGGAAT+GGG 0.448592 1_2:-76979762 None:intergenic
CTCGAAGTATCGTCCGCTAC+CGG 0.463421 1_2:+76979715 Msa0093910:CDS
TTCCTTTGACGTAGCTATTG+AGG 0.468952 1_2:-76977835 None:intergenic
GCACTTTGTATACTGCAATT+GGG 0.470507 1_2:+76978253 Msa0093910:CDS
AAATCCAACCATCAGAGGAA+TGG 0.487161 1_2:-76979763 None:intergenic
GGACCTTTCCTGTTTCCCAT+GGG 0.487829 1_2:+76979851 Msa0093910:CDS
CTCAGGCTCTGGCCCTTCAA+GGG 0.488267 1_2:+76979673 Msa0093910:intron
TAAAGATGAAGCTTGTTGAA+AGG 0.488937 1_2:+76978080 Msa0093910:CDS
AGTGTGTGCGGAACCGGTAG+CGG 0.492111 1_2:-76979728 None:intergenic
CCTTTCCTGTTTCCCATGGG+TGG 0.503156 1_2:+76979854 Msa0093910:CDS
GCGGGACGAAACGCCACCCA+TGG 0.508640 1_2:-76979867 None:intergenic
TTGAGGACAACGTTAGTGTC+GGG 0.518814 1_2:-76977818 None:intergenic
GGTTGAATCCGGACCCCAGC+GGG 0.519058 1_2:-76979885 None:intergenic
AGATTACAATAGACAATATG+AGG 0.522743 1_2:+76977907 Msa0093910:CDS
TCTTTGGTTAACCATATCCA+TGG 0.535708 1_2:-76977609 None:intergenic
GATTCCTAGGAACAAGCAGC+GGG 0.541150 1_2:-76979907 None:intergenic
GGCGCAAAAGACGTTGGAGA+TGG 0.554315 1_2:+76977931 Msa0093910:CDS
GGAAAGGTCCTGAAGTCCTC+CGG 0.564652 1_2:-76979838 None:intergenic
CTATTGTAATCTTTGCAAGT+CGG 0.565418 1_2:-76977896 None:intergenic
ATTGAGGACAACGTTAGTGT+CGG 0.575860 1_2:-76977819 None:intergenic
ACCAGGGGAAAACACAATGA+TGG 0.576978 1_2:-76977771 None:intergenic
CGGGACGAAACGCCACCCAT+GGG 0.584096 1_2:-76979866 None:intergenic
GTCCTCAATAGCTACGTCAA+AGG 0.585254 1_2:+76977833 Msa0093910:CDS
AGCGGACGATACTTCGAGGA+TGG 0.586732 1_2:-76979710 None:intergenic
CTTTGAATCCTCAAACTCAG+TGG 0.591334 1_2:-76977858 None:intergenic
CCATAACTGTCTCCCTTGAA+GGG 0.593862 1_2:-76979685 None:intergenic
CGGTAGCGGACGATACTTCG+AGG 0.602019 1_2:-76979714 None:intergenic
CCACCCATGGGAAACAGGAA+AGG 0.603522 1_2:-76979854 None:intergenic
ACTTGAAAGCCGAATGCAAG+AGG 0.604654 1_2:-76979805 None:intergenic
AACAGTAGAGTTTGTCACCA+GGG 0.615040 1_2:-76977787 None:intergenic
TGAGGAGGCGCAAAAGACGT+TGG 0.623986 1_2:+76977925 Msa0093910:CDS
AGATTCCTAGGAACAAGCAG+CGG 0.629014 1_2:-76979908 None:intergenic
CCAGAAGATTGAGATCAAGA+AGG 0.640828 1_2:+76977649 Msa0093910:CDS
AACCAAAGAAAGAAGAACAT+GGG 0.647859 1_2:+76977623 Msa0093910:CDS
TAACCAAAGAAAGAAGAACA+TGG 0.648089 1_2:+76977622 Msa0093910:CDS
CTTGAAAGCCGAATGCAAGA+GGG 0.654452 1_2:-76979804 None:intergenic
AAACAGTAGAGTTTGTCACC+AGG 0.654743 1_2:-76977788 None:intergenic
TCAAGTTTCCAAATTACCGG+AGG 0.668602 1_2:+76979822 Msa0093910:CDS
ACAGTAGAGTTTGTCACCAG+GGG 0.676336 1_2:-76977786 None:intergenic
TTACAATAGACAATATGAGG+AGG 0.689166 1_2:+76977910 Msa0093910:CDS
GGGTTGAATCCGGACCCCAG+CGG 0.709340 1_2:-76979886 None:intergenic
GGTGGCGTTTCGTCCCGCTG+GGG 0.709578 1_2:+76979872 Msa0093910:CDS
GAGAGCAAAGAAAGTGTGTG+CGG 0.711486 1_2:-76979740 None:intergenic
ATTCCTAGGAACAAGCAGCG+GGG 0.764766 1_2:-76979906 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTCATTAAAATAATTTTGTT+CGG - chr1_2:76979107-76979126 None:intergenic 10.0%
!!! TTCATTAAAATAATTTTGTT+CGG - chr1_2:76979107-76979126 None:intergenic 10.0%
!! AAAGTATGAAGAAATTTAAT+GGG + chr1_2:76979333-76979352 Msa0093910:intron 15.0%
!! AAAGTATGAAGAAATTTAAT+GGG + chr1_2:76979333-76979352 Msa0093910:intron 15.0%
!! TAGCTAATAATTCTATTCTA+TGG - chr1_2:76978139-76978158 None:intergenic 20.0%
!! TAGAATAGAATTATTAGCTA+TGG + chr1_2:76978139-76978158 Msa0093910:intron 20.0%
!! TGCTTTATGGTAATTTAATT+TGG + chr1_2:76978280-76978299 Msa0093910:intron 20.0%
!! ATAAAAAACAAATAAGCACA+TGG - chr1_2:76978323-76978342 None:intergenic 20.0%
!!! TTTTCCTGTAAAATTATTAC+CGG + chr1_2:76978362-76978381 Msa0093910:intron 20.0%
!!! TGAAACTGATCTAAAATATT+GGG - chr1_2:76978472-76978491 None:intergenic 20.0%
!! CTAAGAATTTATTCTTGATT+TGG + chr1_2:76978746-76978765 Msa0093910:intron 20.0%
!! TTCATAACATAGAATAAGTA+TGG - chr1_2:76978957-76978976 None:intergenic 20.0%
!!! TATCAATGACAAACATTTTA+TGG + chr1_2:76979306-76979325 Msa0093910:intron 20.0%
!!! ATCAATGACAAACATTTTAT+GGG + chr1_2:76979307-76979326 Msa0093910:intron 20.0%
!! CATTAAATTTCTTCATACTT+TGG - chr1_2:76979334-76979353 None:intergenic 20.0%
!! CAAAGTATGAAGAAATTTAA+TGG + chr1_2:76979332-76979351 Msa0093910:intron 20.0%
!! TCAAAAAATTCTTCATACTT+TGG - chr1_2:76979360-76979379 None:intergenic 20.0%
!! TAAGAAAATTCTTCATACTT+TGG - chr1_2:76979498-76979517 None:intergenic 20.0%
!! TAGCTAATAATTCTATTCTA+TGG - chr1_2:76978139-76978158 None:intergenic 20.0%
!! TAGAATAGAATTATTAGCTA+TGG + chr1_2:76978139-76978158 Msa0093910:intron 20.0%
!! TGCTTTATGGTAATTTAATT+TGG + chr1_2:76978280-76978299 Msa0093910:intron 20.0%
!! ATAAAAAACAAATAAGCACA+TGG - chr1_2:76978323-76978342 None:intergenic 20.0%
!!! TTTTCCTGTAAAATTATTAC+CGG + chr1_2:76978362-76978381 Msa0093910:intron 20.0%
!!! TGAAACTGATCTAAAATATT+GGG - chr1_2:76978472-76978491 None:intergenic 20.0%
!! CTAAGAATTTATTCTTGATT+TGG + chr1_2:76978746-76978765 Msa0093910:intron 20.0%
!! TTCATAACATAGAATAAGTA+TGG - chr1_2:76978957-76978976 None:intergenic 20.0%
!!! TATCAATGACAAACATTTTA+TGG + chr1_2:76979306-76979325 Msa0093910:intron 20.0%
!!! ATCAATGACAAACATTTTAT+GGG + chr1_2:76979307-76979326 Msa0093910:intron 20.0%
!! CATTAAATTTCTTCATACTT+TGG - chr1_2:76979334-76979353 None:intergenic 20.0%
!! CAAAGTATGAAGAAATTTAA+TGG + chr1_2:76979332-76979351 Msa0093910:intron 20.0%
!! TCAAAAAATTCTTCATACTT+TGG - chr1_2:76979360-76979379 None:intergenic 20.0%
!! TAAGAAAATTCTTCATACTT+TGG - chr1_2:76979498-76979517 None:intergenic 20.0%
! AGATTACAATAGACAATATG+AGG + chr1_2:76977907-76977926 Msa0093910:CDS 25.0%
! ACTAGAAGATGTTCAAAATT+TGG + chr1_2:76977964-76977983 Msa0093910:CDS 25.0%
! TTTCCTGTAAAATTATTACC+GGG + chr1_2:76978363-76978382 Msa0093910:intron 25.0%
! AAAATATTGGGGATTATAAG+CGG - chr1_2:76978460-76978479 None:intergenic 25.0%
!! GAAACTGATCTAAAATATTG+GGG - chr1_2:76978471-76978490 None:intergenic 25.0%
!! GTGAAACTGATCTAAAATAT+TGG - chr1_2:76978473-76978492 None:intergenic 25.0%
! CAGTTTCACAATTATTAGAT+TGG + chr1_2:76978484-76978503 Msa0093910:intron 25.0%
! ATTGTTATCCAATATCATAG+AGG - chr1_2:76978523-76978542 None:intergenic 25.0%
!!! TTAAGAGGTTTTGTTAGTAA+TGG + chr1_2:76978600-76978619 Msa0093910:intron 25.0%
!!! GATGTTTTTAGTTATGAGTT+TGG + chr1_2:76978823-76978842 Msa0093910:intron 25.0%
!! TTATGAGTTTGGAATATTTC+AGG + chr1_2:76978834-76978853 Msa0093910:intron 25.0%
!! TATGAGTTTGGAATATTTCA+GGG + chr1_2:76978835-76978854 Msa0093910:intron 25.0%
!!! TGTTTCATTTTTTATGCATC+AGG + chr1_2:76979255-76979274 Msa0093910:intron 25.0%
!!! AGTATGAAGAATTTTTTGAG+AGG + chr1_2:76979361-76979380 Msa0093910:intron 25.0%
!! TTTTTCGCTAATATAACACA+TGG - chr1_2:76979436-76979455 None:intergenic 25.0%
! TGCGTATCAAGAAATTTATT+GGG + chr1_2:76979471-76979490 Msa0093910:intron 25.0%
!! AGTATGAAGAATTTTCTTAG+AGG + chr1_2:76979499-76979518 Msa0093910:intron 25.0%
!! TTTTTCGCTAATATAACACA+TGG - chr1_2:76979436-76979455 None:intergenic 25.0%
! AGATTACAATAGACAATATG+AGG + chr1_2:76977907-76977926 Msa0093910:CDS 25.0%
! ACTAGAAGATGTTCAAAATT+TGG + chr1_2:76977964-76977983 Msa0093910:CDS 25.0%
! TTTCCTGTAAAATTATTACC+GGG + chr1_2:76978363-76978382 Msa0093910:intron 25.0%
! AAAATATTGGGGATTATAAG+CGG - chr1_2:76978460-76978479 None:intergenic 25.0%
!! GAAACTGATCTAAAATATTG+GGG - chr1_2:76978471-76978490 None:intergenic 25.0%
!! GTGAAACTGATCTAAAATAT+TGG - chr1_2:76978473-76978492 None:intergenic 25.0%
! CAGTTTCACAATTATTAGAT+TGG + chr1_2:76978484-76978503 Msa0093910:intron 25.0%
! ATTGTTATCCAATATCATAG+AGG - chr1_2:76978523-76978542 None:intergenic 25.0%
!!! TTAAGAGGTTTTGTTAGTAA+TGG + chr1_2:76978600-76978619 Msa0093910:intron 25.0%
!!! GATGTTTTTAGTTATGAGTT+TGG + chr1_2:76978823-76978842 Msa0093910:intron 25.0%
!! TTATGAGTTTGGAATATTTC+AGG + chr1_2:76978834-76978853 Msa0093910:intron 25.0%
!! TATGAGTTTGGAATATTTCA+GGG + chr1_2:76978835-76978854 Msa0093910:intron 25.0%
!!! TGTTTCATTTTTTATGCATC+AGG + chr1_2:76979255-76979274 Msa0093910:intron 25.0%
!!! AGTATGAAGAATTTTTTGAG+AGG + chr1_2:76979361-76979380 Msa0093910:intron 25.0%
!! TTTTTCGCTAATATAACACA+TGG - chr1_2:76979436-76979455 None:intergenic 25.0%
! TGCGTATCAAGAAATTTATT+GGG + chr1_2:76979471-76979490 Msa0093910:intron 25.0%
!! AGTATGAAGAATTTTCTTAG+AGG + chr1_2:76979499-76979518 Msa0093910:intron 25.0%
!! TTTTTCGCTAATATAACACA+TGG - chr1_2:76979436-76979455 None:intergenic 25.0%
TAACCAAAGAAAGAAGAACA+TGG + chr1_2:76977622-76977641 Msa0093910:CDS 30.0%
AACCAAAGAAAGAAGAACAT+GGG + chr1_2:76977623-76977642 Msa0093910:CDS 30.0%
ACTTTCTCAAAAAGAAGACA+AGG + chr1_2:76977698-76977717 Msa0093910:CDS 30.0%
CTATTGTAATCTTTGCAAGT+CGG - chr1_2:76977899-76977918 None:intergenic 30.0%
TTACAATAGACAATATGAGG+AGG + chr1_2:76977910-76977929 Msa0093910:CDS 30.0%
! TTTGGCTAAGATTTTCAACA+AGG + chr1_2:76977982-76978001 Msa0093910:CDS 30.0%
! TTGGCTAAGATTTTCAACAA+GGG + chr1_2:76977983-76978002 Msa0093910:CDS 30.0%
TGATCAGCTTGAACAATTTA+TGG + chr1_2:76978042-76978061 Msa0093910:CDS 30.0%
CTTCATCTTTAACTCGTAAA+TGG - chr1_2:76978071-76978090 None:intergenic 30.0%
!! TAAAGATGAAGCTTGTTGAA+AGG + chr1_2:76978080-76978099 Msa0093910:CDS 30.0%
!! AAAGATGAAGCTTGTTGAAA+GGG + chr1_2:76978081-76978100 Msa0093910:CDS 30.0%
! AGTATTTCCGTTCTCTTTTT+AGG + chr1_2:76978181-76978200 Msa0093910:intron 30.0%
!!! TCTGCGCTTTTTGTTTTTTT+AGG + chr1_2:76978218-76978237 Msa0093910:intron 30.0%
TTCCTGTAAAATTATTACCG+GGG + chr1_2:76978364-76978383 Msa0093910:intron 30.0%
TAGAAGAACCTCTATGATAT+TGG + chr1_2:76978512-76978531 Msa0093910:intron 30.0%
! TTTGGCTTATTTCTTGATTG+AGG + chr1_2:76978764-76978783 Msa0093910:intron 30.0%
! AAGAGTTTAGGGTTATAAAG+AGG - chr1_2:76979001-76979020 None:intergenic 30.0%
!!! TTATTTTAATGAAACCGACG+TGG + chr1_2:76979114-76979133 Msa0093910:intron 30.0%
TGAGAGGAACTATAAACAAA+TGG + chr1_2:76979377-76979396 Msa0093910:intron 30.0%
GTGCGTATCAAGAAATTTAT+TGG + chr1_2:76979470-76979489 Msa0093910:intron 30.0%
AGGAACTATAAAACGAATGT+TGG + chr1_2:76979519-76979538 Msa0093910:intron 30.0%
TGATTTCTATGCACTGAAAA+AGG + chr1_2:76979636-76979655 Msa0093910:intron 30.0%
GATTTCTATGCACTGAAAAA+GGG + chr1_2:76979637-76979656 Msa0093910:intron 30.0%
!! CTTTCAAGTTTCCAAATTAC+CGG + chr1_2:76979819-76979838 Msa0093910:CDS 30.0%
TAACCAAAGAAAGAAGAACA+TGG + chr1_2:76977622-76977641 Msa0093910:CDS 30.0%
AACCAAAGAAAGAAGAACAT+GGG + chr1_2:76977623-76977642 Msa0093910:CDS 30.0%
ACTTTCTCAAAAAGAAGACA+AGG + chr1_2:76977698-76977717 Msa0093910:CDS 30.0%
CTATTGTAATCTTTGCAAGT+CGG - chr1_2:76977899-76977918 None:intergenic 30.0%
TTACAATAGACAATATGAGG+AGG + chr1_2:76977910-76977929 Msa0093910:CDS 30.0%
! TTTGGCTAAGATTTTCAACA+AGG + chr1_2:76977982-76978001 Msa0093910:CDS 30.0%
! TTGGCTAAGATTTTCAACAA+GGG + chr1_2:76977983-76978002 Msa0093910:CDS 30.0%
TGATCAGCTTGAACAATTTA+TGG + chr1_2:76978042-76978061 Msa0093910:CDS 30.0%
CTTCATCTTTAACTCGTAAA+TGG - chr1_2:76978071-76978090 None:intergenic 30.0%
!! TAAAGATGAAGCTTGTTGAA+AGG + chr1_2:76978080-76978099 Msa0093910:CDS 30.0%
!! AAAGATGAAGCTTGTTGAAA+GGG + chr1_2:76978081-76978100 Msa0093910:CDS 30.0%
! AGTATTTCCGTTCTCTTTTT+AGG + chr1_2:76978181-76978200 Msa0093910:intron 30.0%
!!! TCTGCGCTTTTTGTTTTTTT+AGG + chr1_2:76978218-76978237 Msa0093910:intron 30.0%
TTCCTGTAAAATTATTACCG+GGG + chr1_2:76978364-76978383 Msa0093910:intron 30.0%
TAGAAGAACCTCTATGATAT+TGG + chr1_2:76978512-76978531 Msa0093910:intron 30.0%
! TTTGGCTTATTTCTTGATTG+AGG + chr1_2:76978764-76978783 Msa0093910:intron 30.0%
! AAGAGTTTAGGGTTATAAAG+AGG - chr1_2:76979001-76979020 None:intergenic 30.0%
!!! TTATTTTAATGAAACCGACG+TGG + chr1_2:76979114-76979133 Msa0093910:intron 30.0%
TGAGAGGAACTATAAACAAA+TGG + chr1_2:76979377-76979396 Msa0093910:intron 30.0%
GTGCGTATCAAGAAATTTAT+TGG + chr1_2:76979470-76979489 Msa0093910:intron 30.0%
AGGAACTATAAAACGAATGT+TGG + chr1_2:76979519-76979538 Msa0093910:intron 30.0%
TGATTTCTATGCACTGAAAA+AGG + chr1_2:76979636-76979655 Msa0093910:intron 30.0%
GATTTCTATGCACTGAAAAA+GGG + chr1_2:76979637-76979656 Msa0093910:intron 30.0%
!! CTTTCAAGTTTCCAAATTAC+CGG + chr1_2:76979819-76979838 Msa0093910:CDS 30.0%
TGAGAAAGTGACAAGTTTGT+TGG - chr1_2:76977687-76977706 None:intergenic 35.0%
! AGATTTTCAACAAGGGTGAT+TGG + chr1_2:76977990-76978009 Msa0093910:CDS 35.0%
!!! TTCCGTTCTCTTTTTAGGTT+AGG + chr1_2:76978186-76978205 Msa0093910:intron 35.0%
!!! TCCGTTCTCTTTTTAGGTTA+GGG + chr1_2:76978187-76978206 Msa0093910:intron 35.0%
ACCCTAACCTAAAAAGAGAA+CGG - chr1_2:76978191-76978210 None:intergenic 35.0%
TGCACTTTGTATACTGCAAT+TGG + chr1_2:76978252-76978271 Msa0093910:CDS 35.0%
GCACTTTGTATACTGCAATT+GGG + chr1_2:76978253-76978272 Msa0093910:CDS 35.0%
! GCAATTGGGATTTTGCTTTA+TGG + chr1_2:76978267-76978286 Msa0093910:CDS 35.0%
! ATCCCCGGTAATAATTTTAC+AGG - chr1_2:76978369-76978388 None:intergenic 35.0%
! TGAATCTACTCGATGTTTTG+TGG + chr1_2:76978410-76978429 Msa0093910:intron 35.0%
TAAGTATGGAAGTCCTTTGT+AGG - chr1_2:76978943-76978962 None:intergenic 35.0%
AGTTGAAGAGCAAGAGTTTA+GGG - chr1_2:76979012-76979031 None:intergenic 35.0%
GAGGAACTATAAACAAATGG+TGG + chr1_2:76979380-76979399 Msa0093910:intron 35.0%
CTGAAAAAGGGAAAATCCAT+CGG + chr1_2:76979649-76979668 Msa0093910:intron 35.0%
GTTAACAATGTCAGATTCCT+AGG - chr1_2:76979923-76979942 None:intergenic 35.0%
TGAGAAAGTGACAAGTTTGT+TGG - chr1_2:76977687-76977706 None:intergenic 35.0%
! AGATTTTCAACAAGGGTGAT+TGG + chr1_2:76977990-76978009 Msa0093910:CDS 35.0%
!!! TTCCGTTCTCTTTTTAGGTT+AGG + chr1_2:76978186-76978205 Msa0093910:intron 35.0%
!!! TCCGTTCTCTTTTTAGGTTA+GGG + chr1_2:76978187-76978206 Msa0093910:intron 35.0%
ACCCTAACCTAAAAAGAGAA+CGG - chr1_2:76978191-76978210 None:intergenic 35.0%
TGCACTTTGTATACTGCAAT+TGG + chr1_2:76978252-76978271 Msa0093910:CDS 35.0%
GCACTTTGTATACTGCAATT+GGG + chr1_2:76978253-76978272 Msa0093910:CDS 35.0%
! GCAATTGGGATTTTGCTTTA+TGG + chr1_2:76978267-76978286 Msa0093910:CDS 35.0%
! ATCCCCGGTAATAATTTTAC+AGG - chr1_2:76978369-76978388 None:intergenic 35.0%
! TGAATCTACTCGATGTTTTG+TGG + chr1_2:76978410-76978429 Msa0093910:intron 35.0%
TAAGTATGGAAGTCCTTTGT+AGG - chr1_2:76978943-76978962 None:intergenic 35.0%
AGTTGAAGAGCAAGAGTTTA+GGG - chr1_2:76979012-76979031 None:intergenic 35.0%
GAGGAACTATAAACAAATGG+TGG + chr1_2:76979380-76979399 Msa0093910:intron 35.0%
CTGAAAAAGGGAAAATCCAT+CGG + chr1_2:76979649-76979668 Msa0093910:intron 35.0%
GTTAACAATGTCAGATTCCT+AGG - chr1_2:76979923-76979942 None:intergenic 35.0%
GTCCCATGTTCTTCTTTCTT+TGG - chr1_2:76977628-76977647 None:intergenic 40.0%
CCTTCTTGATCTCAATCTTC+TGG - chr1_2:76977652-76977671 None:intergenic 40.0%
CCAGAAGATTGAGATCAAGA+AGG + chr1_2:76977649-76977668 Msa0093910:CDS 40.0%
AACAGTAGAGTTTGTCACCA+GGG - chr1_2:76977790-76977809 None:intergenic 40.0%
AAACAGTAGAGTTTGTCACC+AGG - chr1_2:76977791-76977810 None:intergenic 40.0%
! GGTGACAAACTCTACTGTTT+TGG + chr1_2:76977791-76977810 Msa0093910:CDS 40.0%
ATTGAGGACAACGTTAGTGT+CGG - chr1_2:76977822-76977841 None:intergenic 40.0%
TTCCTTTGACGTAGCTATTG+AGG - chr1_2:76977838-76977857 None:intergenic 40.0%
CTTTGAATCCTCAAACTCAG+TGG - chr1_2:76977861-76977880 None:intergenic 40.0%
! TTTTCAACAAGGGTGATTGG+TGG + chr1_2:76977993-76978012 Msa0093910:CDS 40.0%
CAGGAAAAGATCATGATGTG+AGG - chr1_2:76978350-76978369 None:intergenic 40.0%
! GACAATTTCTGTTAGCCTCT+TGG + chr1_2:76978575-76978594 Msa0093910:intron 40.0%
CAAAACCTCTTAACACCAAG+AGG - chr1_2:76978593-76978612 None:intergenic 40.0%
TCTGCAGTTTGATCCTACAA+AGG + chr1_2:76978927-76978946 Msa0093910:intron 40.0%
GAGTTGAAGAGCAAGAGTTT+AGG - chr1_2:76979013-76979032 None:intergenic 40.0%
AATCCAACCATCAGAGGAAT+GGG - chr1_2:76979765-76979784 None:intergenic 40.0%
AAATCCAACCATCAGAGGAA+TGG - chr1_2:76979766-76979785 None:intergenic 40.0%
GCAAAAAATCCAACCATCAG+AGG - chr1_2:76979771-76979790 None:intergenic 40.0%
TCAAGTTTCCAAATTACCGG+AGG + chr1_2:76979822-76979841 Msa0093910:CDS 40.0%
GTCCCATGTTCTTCTTTCTT+TGG - chr1_2:76977628-76977647 None:intergenic 40.0%
CCTTCTTGATCTCAATCTTC+TGG - chr1_2:76977652-76977671 None:intergenic 40.0%
CCAGAAGATTGAGATCAAGA+AGG + chr1_2:76977649-76977668 Msa0093910:CDS 40.0%
AACAGTAGAGTTTGTCACCA+GGG - chr1_2:76977790-76977809 None:intergenic 40.0%
AAACAGTAGAGTTTGTCACC+AGG - chr1_2:76977791-76977810 None:intergenic 40.0%
! GGTGACAAACTCTACTGTTT+TGG + chr1_2:76977791-76977810 Msa0093910:CDS 40.0%
ATTGAGGACAACGTTAGTGT+CGG - chr1_2:76977822-76977841 None:intergenic 40.0%
TTCCTTTGACGTAGCTATTG+AGG - chr1_2:76977838-76977857 None:intergenic 40.0%
CTTTGAATCCTCAAACTCAG+TGG - chr1_2:76977861-76977880 None:intergenic 40.0%
! TTTTCAACAAGGGTGATTGG+TGG + chr1_2:76977993-76978012 Msa0093910:CDS 40.0%
CAGGAAAAGATCATGATGTG+AGG - chr1_2:76978350-76978369 None:intergenic 40.0%
! GACAATTTCTGTTAGCCTCT+TGG + chr1_2:76978575-76978594 Msa0093910:intron 40.0%
CAAAACCTCTTAACACCAAG+AGG - chr1_2:76978593-76978612 None:intergenic 40.0%
TCTGCAGTTTGATCCTACAA+AGG + chr1_2:76978927-76978946 Msa0093910:intron 40.0%
GAGTTGAAGAGCAAGAGTTT+AGG - chr1_2:76979013-76979032 None:intergenic 40.0%
AATCCAACCATCAGAGGAAT+GGG - chr1_2:76979765-76979784 None:intergenic 40.0%
AAATCCAACCATCAGAGGAA+TGG - chr1_2:76979766-76979785 None:intergenic 40.0%
GCAAAAAATCCAACCATCAG+AGG - chr1_2:76979771-76979790 None:intergenic 40.0%
TCAAGTTTCCAAATTACCGG+AGG + chr1_2:76979822-76979841 Msa0093910:CDS 40.0%
ACCAGGGGAAAACACAATGA+TGG - chr1_2:76977774-76977793 None:intergenic 45.0%
ACAGTAGAGTTTGTCACCAG+GGG - chr1_2:76977789-76977808 None:intergenic 45.0%
TTGAGGACAACGTTAGTGTC+GGG - chr1_2:76977821-76977840 None:intergenic 45.0%
GTCCTCAATAGCTACGTCAA+AGG + chr1_2:76977833-76977852 Msa0093910:CDS 45.0%
CAAAGGAACCACTGAGTTTG+AGG + chr1_2:76977850-76977869 Msa0093910:CDS 45.0%
AACATACGCATCTTGATCCC+CGG - chr1_2:76978384-76978403 None:intergenic 45.0%
!! GTTAGCCTCTTGGTGTTAAG+AGG + chr1_2:76978585-76978604 Msa0093910:intron 45.0%
GTTTCTTGCACGAACTGCAT+TGG + chr1_2:76978680-76978699 Msa0093910:intron 45.0%
CCATAACTGTCTCCCTTGAA+GGG - chr1_2:76979688-76979707 None:intergenic 45.0%
ACCATAACTGTCTCCCTTGA+AGG - chr1_2:76979689-76979708 None:intergenic 45.0%
! AAAGAAAGTGTGTGCGGAAC+CGG - chr1_2:76979737-76979756 None:intergenic 45.0%
! GAGAGCAAAGAAAGTGTGTG+CGG - chr1_2:76979743-76979762 None:intergenic 45.0%
CTTGAAAGCCGAATGCAAGA+GGG - chr1_2:76979807-76979826 None:intergenic 45.0%
ACTTGAAAGCCGAATGCAAG+AGG - chr1_2:76979808-76979827 None:intergenic 45.0%
AGATTCCTAGGAACAAGCAG+CGG - chr1_2:76979911-76979930 None:intergenic 45.0%
ACCAGGGGAAAACACAATGA+TGG - chr1_2:76977774-76977793 None:intergenic 45.0%
ACAGTAGAGTTTGTCACCAG+GGG - chr1_2:76977789-76977808 None:intergenic 45.0%
TTGAGGACAACGTTAGTGTC+GGG - chr1_2:76977821-76977840 None:intergenic 45.0%
GTCCTCAATAGCTACGTCAA+AGG + chr1_2:76977833-76977852 Msa0093910:CDS 45.0%
CAAAGGAACCACTGAGTTTG+AGG + chr1_2:76977850-76977869 Msa0093910:CDS 45.0%
AACATACGCATCTTGATCCC+CGG - chr1_2:76978384-76978403 None:intergenic 45.0%
!! GTTAGCCTCTTGGTGTTAAG+AGG + chr1_2:76978585-76978604 Msa0093910:intron 45.0%
GTTTCTTGCACGAACTGCAT+TGG + chr1_2:76978680-76978699 Msa0093910:intron 45.0%
CCATAACTGTCTCCCTTGAA+GGG - chr1_2:76979688-76979707 None:intergenic 45.0%
ACCATAACTGTCTCCCTTGA+AGG - chr1_2:76979689-76979708 None:intergenic 45.0%
! AAAGAAAGTGTGTGCGGAAC+CGG - chr1_2:76979737-76979756 None:intergenic 45.0%
! GAGAGCAAAGAAAGTGTGTG+CGG - chr1_2:76979743-76979762 None:intergenic 45.0%
CTTGAAAGCCGAATGCAAGA+GGG - chr1_2:76979807-76979826 None:intergenic 45.0%
ACTTGAAAGCCGAATGCAAG+AGG - chr1_2:76979808-76979827 None:intergenic 45.0%
AGATTCCTAGGAACAAGCAG+CGG - chr1_2:76979911-76979930 None:intergenic 45.0%
! GCCATCATTGTGTTTTCCCC+TGG + chr1_2:76977770-76977789 Msa0093910:CDS 50.0%
GTGAAATAAGCGAGCCACGT+CGG - chr1_2:76979131-76979150 None:intergenic 50.0%
AGGGAAAATCCATCGGTCTC+AGG + chr1_2:76979656-76979675 Msa0093910:intron 50.0%
CCCTTCAAGGGAGACAGTTA+TGG + chr1_2:76979685-76979704 Msa0093910:CDS 50.0%
TTGCTCTCCCATTCCTCTGA+TGG + chr1_2:76979755-76979774 Msa0093910:CDS 50.0%
TCTCCCATTCCTCTGATGGT+TGG + chr1_2:76979759-76979778 Msa0093910:CDS 50.0%
CAAGCTGTCCCTCTTGCATT+CGG + chr1_2:76979796-76979815 Msa0093910:CDS 50.0%
CCTGAAGTCCTCCGGTAATT+TGG - chr1_2:76979833-76979852 None:intergenic 50.0%
CCAAATTACCGGAGGACTTC+AGG + chr1_2:76979830-76979849 Msa0093910:CDS 50.0%
AGGACCTTTCCTGTTTCCCA+TGG + chr1_2:76979850-76979869 Msa0093910:CDS 50.0%
GGACCTTTCCTGTTTCCCAT+GGG + chr1_2:76979851-76979870 Msa0093910:CDS 50.0%
ATTCCTAGGAACAAGCAGCG+GGG - chr1_2:76979909-76979928 None:intergenic 50.0%
GATTCCTAGGAACAAGCAGC+GGG - chr1_2:76979910-76979929 None:intergenic 50.0%
! GCCATCATTGTGTTTTCCCC+TGG + chr1_2:76977770-76977789 Msa0093910:CDS 50.0%
GTGAAATAAGCGAGCCACGT+CGG - chr1_2:76979131-76979150 None:intergenic 50.0%
AGGGAAAATCCATCGGTCTC+AGG + chr1_2:76979656-76979675 Msa0093910:intron 50.0%
CCCTTCAAGGGAGACAGTTA+TGG + chr1_2:76979685-76979704 Msa0093910:CDS 50.0%
TTGCTCTCCCATTCCTCTGA+TGG + chr1_2:76979755-76979774 Msa0093910:CDS 50.0%
TCTCCCATTCCTCTGATGGT+TGG + chr1_2:76979759-76979778 Msa0093910:CDS 50.0%
CAAGCTGTCCCTCTTGCATT+CGG + chr1_2:76979796-76979815 Msa0093910:CDS 50.0%
CCTGAAGTCCTCCGGTAATT+TGG - chr1_2:76979833-76979852 None:intergenic 50.0%
CCAAATTACCGGAGGACTTC+AGG + chr1_2:76979830-76979849 Msa0093910:CDS 50.0%
AGGACCTTTCCTGTTTCCCA+TGG + chr1_2:76979850-76979869 Msa0093910:CDS 50.0%
GGACCTTTCCTGTTTCCCAT+GGG + chr1_2:76979851-76979870 Msa0093910:CDS 50.0%
ATTCCTAGGAACAAGCAGCG+GGG - chr1_2:76979909-76979928 None:intergenic 50.0%
GATTCCTAGGAACAAGCAGC+GGG - chr1_2:76979910-76979929 None:intergenic 50.0%
! TGAGGAGGCGCAAAAGACGT+TGG + chr1_2:76977925-76977944 Msa0093910:CDS 55.0%
GGCGCAAAAGACGTTGGAGA+TGG + chr1_2:76977931-76977950 Msa0093910:CDS 55.0%
AATCCATCGGTCTCAGGCTC+TGG + chr1_2:76979662-76979681 Msa0093910:intron 55.0%
AGCGGACGATACTTCGAGGA+TGG - chr1_2:76979713-76979732 None:intergenic 55.0%
!! CTCGAAGTATCGTCCGCTAC+CGG + chr1_2:76979715-76979734 Msa0093910:CDS 55.0%
GGAAAGGTCCTGAAGTCCTC+CGG - chr1_2:76979841-76979860 None:intergenic 55.0%
CCACCCATGGGAAACAGGAA+AGG - chr1_2:76979857-76979876 None:intergenic 55.0%
CCTTTCCTGTTTCCCATGGG+TGG + chr1_2:76979854-76979873 Msa0093910:CDS 55.0%
AAACGCCACCCATGGGAAAC+AGG - chr1_2:76979862-76979881 None:intergenic 55.0%
ACAAGCAGCGGGGTTGAATC+CGG - chr1_2:76979899-76979918 None:intergenic 55.0%
! TGAGGAGGCGCAAAAGACGT+TGG + chr1_2:76977925-76977944 Msa0093910:CDS 55.0%
GGCGCAAAAGACGTTGGAGA+TGG + chr1_2:76977931-76977950 Msa0093910:CDS 55.0%
AATCCATCGGTCTCAGGCTC+TGG + chr1_2:76979662-76979681 Msa0093910:intron 55.0%
AGCGGACGATACTTCGAGGA+TGG - chr1_2:76979713-76979732 None:intergenic 55.0%
!! CTCGAAGTATCGTCCGCTAC+CGG + chr1_2:76979715-76979734 Msa0093910:CDS 55.0%
GGAAAGGTCCTGAAGTCCTC+CGG - chr1_2:76979841-76979860 None:intergenic 55.0%
CCACCCATGGGAAACAGGAA+AGG - chr1_2:76979857-76979876 None:intergenic 55.0%
CCTTTCCTGTTTCCCATGGG+TGG + chr1_2:76979854-76979873 Msa0093910:CDS 55.0%
AAACGCCACCCATGGGAAAC+AGG - chr1_2:76979862-76979881 None:intergenic 55.0%
ACAAGCAGCGGGGTTGAATC+CGG - chr1_2:76979899-76979918 None:intergenic 55.0%
! TCTCAGGCTCTGGCCCTTCA+AGG + chr1_2:76979672-76979691 Msa0093910:intron 60.0%
! CTCAGGCTCTGGCCCTTCAA+GGG + chr1_2:76979673-76979692 Msa0093910:intron 60.0%
!! CGGTAGCGGACGATACTTCG+AGG - chr1_2:76979717-76979736 None:intergenic 60.0%
AGTGTGTGCGGAACCGGTAG+CGG - chr1_2:76979731-76979750 None:intergenic 60.0%
CAACCCCGCTGCTTGTTCCT+AGG + chr1_2:76979903-76979922 Msa0093910:CDS 60.0%
! TCTCAGGCTCTGGCCCTTCA+AGG + chr1_2:76979672-76979691 Msa0093910:intron 60.0%
! CTCAGGCTCTGGCCCTTCAA+GGG + chr1_2:76979673-76979692 Msa0093910:intron 60.0%
!! CGGTAGCGGACGATACTTCG+AGG - chr1_2:76979717-76979736 None:intergenic 60.0%
AGTGTGTGCGGAACCGGTAG+CGG - chr1_2:76979731-76979750 None:intergenic 60.0%
CAACCCCGCTGCTTGTTCCT+AGG + chr1_2:76979903-76979922 Msa0093910:CDS 60.0%
CGGGACGAAACGCCACCCAT+GGG - chr1_2:76979869-76979888 None:intergenic 65.0%
GGTTGAATCCGGACCCCAGC+GGG - chr1_2:76979888-76979907 None:intergenic 65.0%
GGGTTGAATCCGGACCCCAG+CGG - chr1_2:76979889-76979908 None:intergenic 65.0%
CGGGACGAAACGCCACCCAT+GGG - chr1_2:76979869-76979888 None:intergenic 65.0%
GGTTGAATCCGGACCCCAGC+GGG - chr1_2:76979888-76979907 None:intergenic 65.0%
GGGTTGAATCCGGACCCCAG+CGG - chr1_2:76979889-76979908 None:intergenic 65.0%
GGGCCAGAGCCTGAGACCGA+TGG - chr1_2:76979668-76979687 None:intergenic 70.0%
GCGGGACGAAACGCCACCCA+TGG - chr1_2:76979870-76979889 None:intergenic 70.0%
TGGGTGGCGTTTCGTCCCGC+TGG + chr1_2:76979870-76979889 Msa0093910:CDS 70.0%
GGGTGGCGTTTCGTCCCGCT+GGG + chr1_2:76979871-76979890 Msa0093910:CDS 70.0%
GGTGGCGTTTCGTCCCGCTG+GGG + chr1_2:76979872-76979891 Msa0093910:CDS 70.0%
CGTTTCGTCCCGCTGGGGTC+CGG + chr1_2:76979877-76979896 Msa0093910:CDS 70.0%
GGGCCAGAGCCTGAGACCGA+TGG - chr1_2:76979668-76979687 None:intergenic 70.0%
GCGGGACGAAACGCCACCCA+TGG - chr1_2:76979870-76979889 None:intergenic 70.0%
TGGGTGGCGTTTCGTCCCGC+TGG + chr1_2:76979870-76979889 Msa0093910:CDS 70.0%
GGGTGGCGTTTCGTCCCGCT+GGG + chr1_2:76979871-76979890 Msa0093910:CDS 70.0%
GGTGGCGTTTCGTCCCGCTG+GGG + chr1_2:76979872-76979891 Msa0093910:CDS 70.0%
CGTTTCGTCCCGCTGGGGTC+CGG + chr1_2:76979877-76979896 Msa0093910:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 76977611 76979946 76977611 ID=Msa0093910;Name=Msa0093910
chr1_2 mRNA 76977611 76979946 76977611 ID=Msa0093910-mRNA-1;Parent=Msa0093910;Name=Msa0093910-mRNA-1;_AED=0.56;_eAED=0.56;_QI=0|0|0|0.33|1|1|3|0|278
chr1_2 exon 76977611 76978129 76977611 ID=Msa0093910-mRNA-1:exon:27189;Parent=Msa0093910-mRNA-1
chr1_2 exon 76978240 76978288 76978240 ID=Msa0093910-mRNA-1:exon:27190;Parent=Msa0093910-mRNA-1
chr1_2 exon 76979678 76979946 76979678 ID=Msa0093910-mRNA-1:exon:27191;Parent=Msa0093910-mRNA-1
chr1_2 CDS 76977611 76978129 76977611 ID=Msa0093910-mRNA-1:cds;Parent=Msa0093910-mRNA-1
chr1_2 CDS 76978240 76978288 76978240 ID=Msa0093910-mRNA-1:cds;Parent=Msa0093910-mRNA-1
chr1_2 CDS 76979678 76979946 76979678 ID=Msa0093910-mRNA-1:cds;Parent=Msa0093910-mRNA-1
Gene Sequence

>Msa0093910

ATGGATATGGTTAACCAAAGAAAGAAGAACATGGGACGCCAGAAGATTGAGATCAAGAAGGTTGAGAAAGATTCCAACAAACTTGTCACTTTCTCAAAAAGAAGACAAGGTTTATTCAGAAAAGCAAGCGAACTTTGTGTTTTATGTGATGTTCATGCAGCCATCATTGTGTTTTCCCCTGGTGACAAACTCTACTGTTTTGGTCAACCCGACACTAACGTTGTCCTCAATAGCTACGTCAAAGGAACCACTGAGTTTGAGGATTCAAAGTCAACTGAAAATTTTCCGACTTGCAAAGATTACAATAGACAATATGAGGAGGCGCAAAAGACGTTGGAGATGGAAAAGAAGAAACTAGAAGATGTTCAAAATTTGGCTAAGATTTTCAACAAGGGTGATTGGTGGAATGATTCAATTGATGATATGACTAGTGATCAGCTTGAACAATTTATGGTGTCCATTTACGAGTTAAAGATGAAGCTTGTTGAAAGGGCTGATGAACTTGTCATGAAGCAAAGTGTGCTTTCAGTATGCACTTTGTATACTGCAATTGGGATTTTGCTTTATGGCTCTGGCCCTTCAAGGGAGACAGTTATGGTTCCATCCTCGAAGTATCGTCCGCTACCGGTTCCGCACACACTTTCTTTGCTCTCCCATTCCTCTGATGGTTGGATTTTTTGCGTTCACAAGCTGTCCCTCTTGCATTCGGCTTTCAAGTTTCCAAATTACCGGAGGACTTCAGGACCTTTCCTGTTTCCCATGGGTGGCGTTTCGTCCCGCTGGGGTCCGGATTCAACCCCGCTGCTTGTTCCTAGGAATCTGACATTGTTAACTTGA
Protein sequence

>Msa0093910

MDMVNQRKKNMGRQKIEIKKVEKDSNKLVTFSKRRQGLFRKASELCVLCDVHAAIIVFSPGDKLYCFGQPDTNVVLNSYVKGTTEFEDSKSTENFPTCKDYNRQYEEAQKTLEMEKKKLEDVQNLAKIFNKGDWWNDSIDDMTSDQLEQFMVSIYELKMKLVERADELVMKQSVLSVCTLYTAIGILLYGSGPSRETVMVPSSKYRPLPVPHTLSLLSHSSDGWIFCVHKLSLLHSAFKFPNYRRTSGPFLFPMGGVSSRWGPDSTPLLVPRNLTLLT*