AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0094380

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0094380 MtrunA17_Chr5g0440741 89.606 279 24 2 353 630 15 289 7.35e-170 485
Msa0094380 MtrunA17_Chr5g0440731 88.380 284 23 4 353 630 15 294 1.29e-165 474
Msa0094380 MtrunA17_Chr5g0440751 89.143 175 17 1 1 173 1 175 2.06e-100 304
Msa0094380 MtrunA17_Chr5g0440751 70.000 180 19 3 174 352 17 162 8.41e-69 222
Msa0094380 MtrunA17_Chr5g0409841 65.532 235 66 7 355 578 1 231 3.39e-85 266
Msa0094380 MtrunA17_Chr5g0440721 79.141 163 19 2 5 165 12 161 1.14e-77 244
Msa0094380 MtrunA17_Chr5g0440721 64.444 180 16 3 174 352 24 156 8.29e-62 202
Msa0094380 MtrunA17_Chr5g0440821 69.668 211 18 3 9 173 23 233 2.35e-77 264
Msa0094380 MtrunA17_Chr5g0409831 49.141 291 71 9 355 630 1 229 7.72e-59 197
Msa0094380 MtrunA17_Chr5g0409951 63.804 163 25 3 174 327 113 250 2.17e-53 183
Msa0094380 MtrunA17_Chr5g0409951 59.868 152 42 3 3 135 99 250 7.89e-41 149
Msa0094380 MtrunA17_Chr5g0409951 56.701 97 28 3 353 443 22 110 2.11e-20 91.3
Msa0094380 MtrunA17_Chr5g0429521 58.228 79 29 2 440 517 134 209 4.22e-22 97.4
Msa0094380 MtrunA17_Chr1g0162081 57.692 78 28 3 436 511 119 193 4.58e-22 97.1
Msa0094380 MtrunA17_Chr3g0104071 64.179 67 21 1 440 506 149 212 7.13e-22 97.1
Msa0094380 MtrunA17_Chr1g0210471 62.687 67 22 1 440 506 126 189 3.92e-21 93.2
Msa0094380 MtrunA17_Chr5g0436501 56.790 81 33 2 427 506 113 192 5.33e-21 93.6
Msa0094380 MtrunA17_Chr7g0241761 45.217 115 49 3 440 552 142 244 1.16e-20 93.2
Msa0094380 MtrunA17_Chr4g0062741 53.165 79 32 3 436 512 135 210 5.57e-20 91.3
Msa0094380 MtrunA17_Chr8g0365011 45.283 106 45 2 420 513 74 178 3.54e-19 88.2
Msa0094380 MtrunA17_Chr5g0432921 42.241 116 64 2 395 510 72 184 1.44e-18 85.1
Msa0094380 MtrunA17_Chr3g0135671 48.571 70 36 0 440 509 93 162 2.14e-18 84.7
Msa0094380 MtrunA17_Chr8g0364731 55.224 67 29 1 447 513 10 75 4.98e-18 82.4
Msa0094380 MtrunA17_Chr2g0331031 53.846 65 27 1 440 504 111 172 1.16e-17 85.1
Msa0094380 MtrunA17_Chr4g0055931 51.515 66 27 2 440 504 97 158 8.83e-17 82.0
Msa0094380 MtrunA17_Chr8g0389241 65.217 46 16 0 440 485 107 152 5.36e-16 79.0
Msa0094380 MtrunA17_Chr6g0488471 52.308 65 28 1 440 504 99 160 5.40e-16 79.0
Msa0094380 MtrunA17_Chr5g0415191 67.391 46 15 0 440 485 104 149 6.45e-16 79.3
Msa0094380 MtrunA17_Chr4g0059701 68.889 45 14 0 440 484 86 130 8.06e-16 78.6
Msa0094380 MtrunA17_Chr5g0432941 39.200 125 54 3 395 510 73 184 1.19e-15 76.6
Msa0094380 MtrunA17_Chr1g0192061 39.683 126 55 7 406 513 13 135 3.30e-15 74.3
Msa0094380 MtrunA17_Chr6g0452791 54.545 55 25 0 440 494 82 136 4.28e-15 73.6
Msa0094380 MtrunA17_Chr3g0092621 42.857 70 37 1 440 509 86 152 2.05e-13 68.9
Msa0094380 MtrunA17_Chr3g0113121 46.667 90 40 3 439 520 96 185 2.56e-13 69.7
Msa0094380 MtrunA17_Chr5g0409941 43.697 119 21 4 7 122 31 106 4.43e-13 65.9
Msa0094380 MtrunA17_Chr5g0409941 83.333 36 6 0 174 209 44 79 3.77e-11 60.5
Msa0094380 MtrunA17_Chr5g0409941 81.818 33 6 0 282 314 74 106 7.74e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0094380 AT5G58900.1 40.441 136 65 3 440 570 143 267 8.46e-23 99.4
Msa0094380 AT5G08520.1 56.790 81 31 2 436 515 115 192 2.00e-22 98.6
Msa0094380 AT5G04760.1 60.526 76 27 1 431 506 92 164 2.46e-22 96.3
Msa0094380 AT5G01200.1 61.429 70 23 2 440 508 148 214 4.42e-21 94.0
Msa0094380 AT2G38090.1 57.692 78 28 3 433 508 135 209 1.98e-20 92.8
Msa0094380 AT1G49010.1 53.659 82 33 3 436 515 131 209 5.76e-20 91.7
Msa0094380 AT5G61620.1 43.651 126 51 5 432 549 101 214 4.64e-19 89.0
Msa0094380 AT3G11280.2 50.000 92 37 3 440 527 129 215 3.19e-18 85.5
Msa0094380 AT3G11280.1 50.000 92 37 3 440 527 129 215 3.19e-18 85.5
Msa0094380 AT5G23650.1 52.632 76 33 1 440 515 122 194 5.20e-18 86.3
Msa0094380 AT3G10580.2 39.552 134 63 5 427 550 77 202 1.08e-17 84.0
Msa0094380 AT3G10580.1 38.028 142 70 5 427 558 77 210 1.19e-17 84.3
Msa0094380 AT5G05790.2 55.000 80 28 3 436 510 128 204 2.80e-17 83.2
Msa0094380 AT5G05790.1 55.000 80 28 3 436 510 128 204 2.80e-17 83.2
Msa0094380 AT5G47390.1 45.745 94 44 4 440 530 98 187 4.13e-17 84.0
Msa0094380 AT1G70000.1 67.391 46 15 0 440 485 100 145 2.10e-16 80.1
Msa0094380 AT1G70000.2 67.391 46 15 0 440 485 100 145 2.10e-16 80.1
Msa0094380 AT5G56840.1 55.172 58 26 0 440 497 93 150 2.63e-16 79.3
Msa0094380 AT4G09450.1 54.412 68 28 1 440 507 93 157 4.06e-16 77.8
Msa0094380 AT3G16350.1 65.217 46 16 0 440 485 139 184 1.52e-15 79.3
Msa0094380 AT1G74840.2 68.889 45 14 0 440 484 98 142 1.54e-15 77.0
Msa0094380 AT1G74840.1 68.889 45 14 0 440 484 98 142 2.43e-15 77.0
Msa0094380 AT1G19000.2 68.889 45 14 0 440 484 104 148 3.37e-15 77.0
Msa0094380 AT1G19000.1 68.889 45 14 0 440 484 104 148 3.37e-15 77.0
Msa0094380 AT3G10590.1 50.000 68 30 2 440 507 113 176 1.90e-12 67.4

Find 177 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCCATATCTTTCACATTT+TGG 0.099316 1_2:+77594675 None:intergenic
TCACCTTGTTCTTGGGTATT+TGG 0.139349 1_2:+77596784 None:intergenic
TCAACATGATTCATAGGTTT+TGG 0.219569 1_2:+77596661 None:intergenic
CCTGCTGCTGCCGGGGATAC+AGG 0.250754 1_2:+77596910 None:intergenic
TCAACACGATTCATAGGTTT+TGG 0.254607 1_2:+77597508 None:intergenic
CTGTCCAATGCCCTTTCCTT+GGG 0.257949 1_2:+77595048 None:intergenic
TCCTATAGCTCCTTCTGTTC+AGG 0.275418 1_2:-77596605 Msa0094380:intron
CCTGCTGCCGCCGGGGATAC+AGG 0.277402 1_2:+77595963 None:intergenic
CTTGGGGCATGACTTTCTTC+TGG 0.281577 1_2:+77595065 None:intergenic
TCCTAGAGCTCCTTCTGTTC+AGG 0.288148 1_2:-77597452 Msa0094380:intron
TTCTCAAGTTTGTTCATATC+AGG 0.295923 1_2:+77594293 None:intergenic
TCACATGGTCACCTTGTTCT+TGG 0.300461 1_2:+77596776 None:intergenic
TCTGTCCAATGCCCTTTCCT+TGG 0.314383 1_2:+77595047 None:intergenic
CTGAACATGTTTGGCATCAT+TGG 0.316454 1_2:+77596861 None:intergenic
TGGGTATTTGGCCTTCCATT+TGG 0.324095 1_2:+77596796 None:intergenic
ACATTCTCAACATGATTCAT+AGG 0.327654 1_2:+77596655 None:intergenic
TATGCTTTCCCACCTGGTTC+AGG 0.329227 1_2:-77596014 Msa0094380:CDS
CCATTTGTGTTGTTGCGCTT+GGG 0.329671 1_2:+77596140 None:intergenic
TGGATATTTGGCCTTCCATT+TGG 0.341904 1_2:+77595849 None:intergenic
CCACCAAAATGTGAAAGATA+TGG 0.352224 1_2:-77594678 Msa0094380:CDS
CACATGGTCACCTTGTTCTT+GGG 0.355028 1_2:+77596777 None:intergenic
GCCATTTGTGTTGTTGCGCT+TGG 0.355090 1_2:+77596139 None:intergenic
TAGAAGAAATCAAACGGTTC+TGG 0.355215 1_2:-77596215 Msa0094380:CDS
TGAGAAGATGCGCAGCTTGT+TGG 0.358077 1_2:-77594276 Msa0094380:CDS
CCTGCATATGCTTTCCCACC+TGG 0.358776 1_2:-77596020 Msa0094380:CDS
CACCGGAGGCTGAACATGTT+TGG 0.362724 1_2:+77595905 None:intergenic
CACCGGAGGCTGAACATGTT+TGG 0.362724 1_2:+77596852 None:intergenic
GATGCTCCTGTGTTGGTTGT+TGG 0.370634 1_2:-77596721 Msa0094380:CDS
TTGGATAAAGCAACACCAAC+TGG 0.371101 1_2:+77594330 None:intergenic
GATGTTCCTGTGTTGGTTGT+TGG 0.372353 1_2:-77597568 Msa0094380:CDS
ACATTCTCAACACGATTCAT+AGG 0.374878 1_2:+77597502 None:intergenic
AAACAGAAATCAAACGGTTC+TGG 0.380690 1_2:-77597060 Msa0094380:intron
TGCTATGCTCAGAGGGATCT+TGG 0.382368 1_2:+77595222 None:intergenic
GTGTTGTTGCGCTTGGGGCC+TGG 0.396203 1_2:+77596146 None:intergenic
AACCTTGTCCTGCTGCTGCC+GGG 0.402092 1_2:+77596902 None:intergenic
TTCTGTGCCTAGTGTTGGTC+AGG 0.402578 1_2:-77597479 Msa0094380:CDS
GGACGAAAATTCGGAGCAAC+AGG 0.414645 1_2:+77596071 None:intergenic
CTGAACATGTTTGGCATCAA+TGG 0.415429 1_2:+77595914 None:intergenic
AAATATTTCTAAAGAATTTG+TGG 0.416332 1_2:-77594750 Msa0094380:CDS
AACCTTGTCCTGCTGCCGCC+GGG 0.418211 1_2:+77595955 None:intergenic
TATGCTATTGATTATCCAAA+TGG 0.421444 1_2:-77595864 Msa0094380:CDS
CCCAAGCGCAACAACACAAA+TGG 0.425501 1_2:-77596140 Msa0094380:CDS
TTACTGTTGCACTTGGGACC+TGG 0.426576 1_2:+77596991 None:intergenic
TCCTTTAGTCACTGCTCCTA+TGG 0.430956 1_2:-77594420 Msa0094380:CDS
GCTCATTTAAATCAATTTGA+AGG 0.434841 1_2:+77595255 None:intergenic
TATGCTGTTAATTATCCAAA+TGG 0.436533 1_2:-77596811 Msa0094380:CDS
GGATTCTCACCATTAGGATA+AGG 0.437709 1_2:+77595990 None:intergenic
TGTGAAAGATATGGAGAAGA+AGG 0.441203 1_2:-77594669 Msa0094380:CDS
GAACAACAACAGGAGAAAAC+TGG 0.441684 1_2:-77595197 Msa0094380:CDS
GGCTTAGGATTCTCACCATT+AGG 0.442479 1_2:+77595984 None:intergenic
AATCGGTTCTACAATTCCTT+CGG 0.444800 1_2:-77594465 Msa0094380:CDS
GGTGATGGCATCTTATTCTT+CGG 0.445274 1_2:+77597027 None:intergenic
ATTGTCCTTGTTGTTTAAGA+TGG 0.446908 1_2:+77594367 None:intergenic
AAACCTTGTCCTGCTGCTGC+CGG 0.447814 1_2:+77596901 None:intergenic
ACCACCCGACTCAATGATAT+CGG 0.449690 1_2:+77595172 None:intergenic
GGCTTAGGATTCTCGCCATT+AGG 0.456259 1_2:+77596931 None:intergenic
TTGGTGTTGCTTTATCCAAT+CGG 0.462526 1_2:-77594326 Msa0094380:CDS
CCTGTATCCCCGGCAGCAGC+AGG 0.464792 1_2:-77596910 Msa0094380:CDS
TTATGTGCCTAGTGTTGGTC+AGG 0.464970 1_2:-77596632 Msa0094380:CDS
GGTTCAGGACCTTATCCTAA+TGG 0.464993 1_2:-77595999 Msa0094380:CDS
CCTGTATCCCCGGCGGCAGC+AGG 0.468531 1_2:-77595963 Msa0094380:CDS
GCCGCCGGGGATACAGGCTT+AGG 0.470478 1_2:+77595969 None:intergenic
GGTACCCTAGGACGAAAATT+CGG 0.472201 1_2:+77596062 None:intergenic
GTCTGTTGCATTCCTTGAGG+AGG 0.477802 1_2:+77594533 None:intergenic
AAACCTTGTCCTGCTGCCGC+CGG 0.480799 1_2:+77595954 None:intergenic
ATTTGTGTTACTGTTGCACT+TGG 0.482874 1_2:+77596984 None:intergenic
GAGGGATCTTGGACTGAAGC+TGG 0.485915 1_2:+77595233 None:intergenic
GCATAGCATGGAACAACAAC+AGG 0.485938 1_2:-77595207 Msa0094380:CDS
ACAGGCGGCTGCTGATGATA+AGG 0.487188 1_2:+77596089 None:intergenic
GGCTTTCGATAGCGCGGTGA+TGG 0.487676 1_2:+77597012 None:intergenic
AGAAAGAGCTGGCGAAGACT+TGG 0.491824 1_2:+77597543 None:intergenic
AGAAAGAGCCGGCGAAGACT+TGG 0.492169 1_2:+77596696 None:intergenic
GCTGCCGGGGATACAGGCTT+AGG 0.492601 1_2:+77596916 None:intergenic
AAAGTCATGCCCCAAGGAAA+GGG 0.493395 1_2:-77595058 Msa0094380:CDS
ATGTTGTGCTTGCTGCCAAT+CGG 0.496477 1_2:-77594482 Msa0094380:CDS
ACGGTTCTGGAAATTTCAAT+CGG 0.496809 1_2:-77596202 Msa0094380:CDS
CCTGTGGTGACGATGCCTAA+TGG 0.500180 1_2:-77596946 Msa0094380:CDS
GAATCCTAAGCCTGTATCCC+CGG 0.504373 1_2:-77596920 Msa0094380:CDS
CATTTGTGTTGTTGCGCTTG+GGG 0.510276 1_2:+77596141 None:intergenic
TGCCAAACATGTTCAGCCTC+CGG 0.511829 1_2:-77595907 Msa0094380:CDS
TGCCAAACATGTTCAGCCTC+CGG 0.513848 1_2:-77596854 Msa0094380:CDS
GAATCCTAAGCCTGTATCCC+CGG 0.518366 1_2:-77595973 Msa0094380:CDS
TCCCCGGCGGCAGCAGGACA+AGG 0.518402 1_2:-77595957 Msa0094380:CDS
TCACCGCGCTATCGAAAGCC+AGG 0.521803 1_2:-77597009 Msa0094380:CDS
GGAGTCTCATGTTGTTCCAT+AGG 0.524662 1_2:+77594404 None:intergenic
ATGCCCCAAGGAAAGGGCAT+TGG 0.524782 1_2:-77595052 Msa0094380:CDS
TCACCATGCTATCGAAAGCC+AGG 0.525059 1_2:-77596164 Msa0094380:CDS
GCATGGCTAGCAATTTGAGT+TGG 0.525594 1_2:+77594716 None:intergenic
TAGTGTTGATGCTCCTGTGT+TGG 0.526887 1_2:-77596728 Msa0094380:CDS
GAAAGTCATGCCCCAAGGAA+AGG 0.527463 1_2:-77595059 Msa0094380:CDS
GTAATTATGGTGAGGATCAG+AGG 0.529504 1_2:-77597628 None:intergenic
ATTAAATAGAAGAAATCAAA+CGG 0.530787 1_2:-77596221 Msa0094380:intron
GGCACCGATATCATTGAGTC+GGG 0.531762 1_2:-77595176 Msa0094380:CDS
TAATCAATAGCATAAGCATT+CGG 0.533630 1_2:+77595873 None:intergenic
CAAGGTGACCATGTGAATCA+TGG 0.533701 1_2:-77596769 Msa0094380:CDS
GTGATTAAACAGAAATCAAA+CGG 0.535847 1_2:-77597066 Msa0094380:intron
TGTTCCATGCTATGCTCAGA+GGG 0.536332 1_2:+77595215 None:intergenic
ACCTGAACAGAAGGAGCTAT+AGG 0.539393 1_2:+77596604 None:intergenic
AAGTGCAACAGTAACACAAA+TGG 0.541697 1_2:-77596982 Msa0094380:CDS
TGTTGGAACCAAGTCTTCGC+CGG 0.542383 1_2:-77596704 Msa0094380:CDS
TGATAAGGCCTCGTCGCCAC+AGG 0.544440 1_2:+77596104 None:intergenic
GGCTTTCGATAGCATGGTGA+TGG 0.547691 1_2:+77596167 None:intergenic
ATCAGAGTTTAGAATTGCAA+TGG 0.548775 1_2:+77595148 None:intergenic
AATGTTTCTGTGCCTAGTGT+TGG 0.550067 1_2:-77597484 Msa0094380:CDS
GGGCCTGGCTTTCGATAGCA+TGG 0.552238 1_2:+77596161 None:intergenic
TTTAAGATGGCAGTGTCTTG+AGG 0.553601 1_2:+77594380 None:intergenic
ATTTAAATCAATTTGAAGGA+GGG 0.554059 1_2:+77595259 None:intergenic
AACAAACGAACCTGAACAGA+AGG 0.557127 1_2:+77596595 None:intergenic
TCCATAGGAGCAGTGACTAA+AGG 0.557140 1_2:+77594419 None:intergenic
TTCGGATCTCCTTGCACCGG+AGG 0.558249 1_2:+77595891 None:intergenic
TGTCCAATGCCCTTTCCTTG+GGG 0.558952 1_2:+77595049 None:intergenic
ATGTGAGGTGGAGGTACCCT+AGG 0.561843 1_2:+77596050 None:intergenic
ACCTGAACAGAAGGAGCTCT+AGG 0.562137 1_2:+77597451 None:intergenic
CATGTTCAGCCTCCGGTGCA+AGG 0.562364 1_2:-77595900 Msa0094380:CDS
CATGTTCAGCCTCCGGTGCA+AGG 0.562364 1_2:-77596847 Msa0094380:CDS
TTGGCATCATTGGCATGAGC+AGG 0.563369 1_2:+77596871 None:intergenic
AACAATCGAACCTGAACAGA+AGG 0.565912 1_2:+77597442 None:intergenic
ACCTTGTCCTGCTGCTGCCG+GGG 0.566255 1_2:+77596903 None:intergenic
CCATTAGGCATCGTCACCAC+AGG 0.566795 1_2:+77596946 None:intergenic
TTGTTCCATGCTATGCTCAG+AGG 0.567759 1_2:+77595214 None:intergenic
CATTTAAATCAATTTGAAGG+AGG 0.570848 1_2:+77595258 None:intergenic
TCCCCGGCAGCAGCAGGACA+AGG 0.572616 1_2:-77596904 Msa0094380:CDS
GCATTCAGATCTCCTTGCAC+CGG 0.575639 1_2:+77596835 None:intergenic
TCAGGAAGTGTAGAACCGAT+TGG 0.577352 1_2:+77594311 None:intergenic
AAGTGTTGATGTTCCTGTGT+TGG 0.580284 1_2:-77597575 Msa0094380:CDS
GCATCATTGGCATGAGCAGG+TGG 0.581815 1_2:+77596874 None:intergenic
TGGCACCGATATCATTGAGT+CGG 0.583638 1_2:-77595177 Msa0094380:CDS
GGAACAGCAATGTGAGGTGG+AGG 0.583732 1_2:+77596041 None:intergenic
GAAGAAAAGTAATTATGGTG+AGG 0.586984 1_2:-77597636 None:intergenic
ATTGGCAGCAAGCACAACAT+AGG 0.587278 1_2:+77594485 None:intergenic
GTTTGAGCATGAGAAAGAGC+TGG 0.587648 1_2:+77597532 None:intergenic
CCAGGTGGGAAAGCATATGC+AGG 0.588904 1_2:+77596020 None:intergenic
TTAGGATAAGGTCCTGAACC+AGG 0.588996 1_2:+77596002 None:intergenic
ACACTTTGTAGCTCAACTGA+AGG 0.589388 1_2:+77594560 None:intergenic
GGAGCAACCTGACCAACACT+AGG 0.591510 1_2:+77597472 None:intergenic
GTTTGAGCATCAGAAAGAGC+CGG 0.593248 1_2:+77596685 None:intergenic
AATGTTTATGTGCCTAGTGT+TGG 0.594914 1_2:-77596637 Msa0094380:CDS
AGATCCCTCTGAGCATAGCA+TGG 0.596307 1_2:-77595219 Msa0094380:CDS
TGGATAAAGCAACACCAACT+GGG 0.597123 1_2:+77594331 None:intergenic
TTCAGATCTCCTTGCACCGG+AGG 0.598124 1_2:+77596838 None:intergenic
CTGTTAATTATCCAAATGGA+AGG 0.601168 1_2:-77596807 Msa0094380:CDS
TTTGTGTTACTGTTGCACTT+GGG 0.605167 1_2:+77596985 None:intergenic
GAAGGAATTGTAGAACCGAT+TGG 0.605792 1_2:+77594467 None:intergenic
ACCTTGTCCTGCTGCCGCCG+GGG 0.606328 1_2:+77595956 None:intergenic
CGAAAATTCGGAGCAACAGG+CGG 0.606908 1_2:+77596074 None:intergenic
CACTGCCATCTTAAACAACA+AGG 0.607403 1_2:-77594372 Msa0094380:CDS
ATTAAACAAGAATGACACAT+TGG 0.608999 1_2:-77594615 Msa0094380:CDS
GCATCAATGGCATGAGCAGG+TGG 0.609092 1_2:+77595927 None:intergenic
GGAGCAACCTGACCAACACT+AGG 0.611273 1_2:+77596625 None:intergenic
ACCGATATCATTGAGTCGGG+TGG 0.615037 1_2:-77595173 Msa0094380:CDS
CTATTGATTATCCAAATGGA+AGG 0.618008 1_2:-77595860 Msa0094380:CDS
GCATTCGGATCTCCTTGCAC+CGG 0.618195 1_2:+77595888 None:intergenic
CAAAGTGTGATTCCTCCTCA+AGG 0.618896 1_2:-77594545 Msa0094380:CDS
TTCACTTTCCTGTGGCGACG+AGG 0.622515 1_2:-77596112 Msa0094380:CDS
TTGGCATCAATGGCATGAGC+AGG 0.623729 1_2:+77595924 None:intergenic
ATCGTCACCACAGGAAAGTG+AGG 0.627432 1_2:+77596955 None:intergenic
TCTGTCTGTTGCATTCCTTG+AGG 0.634159 1_2:+77594530 None:intergenic
CAGAAGAAAGTCATGCCCCA+AGG 0.636413 1_2:-77595064 Msa0094380:CDS
GCAGGAACAGCAATGTGAGG+TGG 0.639750 1_2:+77596038 None:intergenic
GTGACCATGTGAATCATGGT+CGG 0.644274 1_2:-77596765 Msa0094380:CDS
AAGATGGCAGTGTCTTGAGG+AGG 0.644314 1_2:+77594383 None:intergenic
AGGCCAAATACCCAAGAACA+AGG 0.645778 1_2:-77596787 Msa0094380:CDS
TGACAACTTGCAAACCCAGT+TGG 0.648867 1_2:-77594345 Msa0094380:CDS
AACACAGGAGCATCAACACT+AGG 0.653659 1_2:+77596730 None:intergenic
ATTATGGTGAGGATCAGAGG+AGG 0.653905 1_2:-77597625 Msa0094380:CDS
TGGCACGCTTCACTTTCCTG+TGG 0.655390 1_2:-77596120 Msa0094380:CDS
GATAAGGTCCTGAACCAGGT+GGG 0.657071 1_2:+77596006 None:intergenic
AAGGAAAGGGCATTGGACAG+AGG 0.658250 1_2:-77595045 Msa0094380:CDS
GGATCAGAGGAGGAAAGCAG+AGG 0.659593 1_2:-77597615 Msa0094380:CDS
TGGCATGCCTCACTTTCCTG+TGG 0.662752 1_2:-77596962 Msa0094380:CDS
GGACCTGGCTTTCGATAGCG+CGG 0.664348 1_2:+77597006 None:intergenic
TTGGTTCCAACAACCAACAC+AGG 0.665985 1_2:+77596715 None:intergenic
TTGGTTCCAACAACCAACAC+AGG 0.665985 1_2:+77597562 None:intergenic
TATGCAGGAACAGCAATGTG+AGG 0.684479 1_2:+77596035 None:intergenic
GGATAAGGTCCTGAACCAGG+TGG 0.691288 1_2:+77596005 None:intergenic
TCCTAAGCCTGTATCCCCGG+CGG 0.721703 1_2:-77595970 Msa0094380:CDS
GATGCCGACCATGATTCACA+TGG 0.766610 1_2:+77596761 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAATAGAAGAAATCAAA+CGG - chr1_2:77595663-77595682 Msa0094380:intron 15.0%
!! AAAAAATAACTTTCAAACAT+AGG + chr1_2:77596903-77596922 None:intergenic 15.0%
!!! AAATATTTCTAAAGAATTTG+TGG - chr1_2:77597134-77597153 Msa0094380:intron 15.0%
!! ATTATGATATCTTCTTGTTA+TGG - chr1_2:77596324-77596343 Msa0094380:intron 20.0%
!! TGAAAGTTAAGAAAATTACT+TGG + chr1_2:77596375-77596394 None:intergenic 20.0%
!!! ATTTTCTTAACTTTCATGAT+TGG - chr1_2:77596379-77596398 Msa0094380:intron 20.0%
!!! CATGCATAATATTTTTTGAA+TGG + chr1_2:77596510-77596529 None:intergenic 20.0%
!! TTCAAAAAATATTATGCATG+TGG - chr1_2:77596510-77596529 Msa0094380:intron 20.0%
!! TAATTCAAATTGGATGAAAT+TGG - chr1_2:77596536-77596555 Msa0094380:intron 20.0%
!!! TATTTTTTGTATAGAAAGCA+TGG - chr1_2:77596578-77596597 Msa0094380:intron 20.0%
!! ATTTAAATCAATTTGAAGGA+GGG + chr1_2:77596628-77596647 None:intergenic 20.0%
!!! TATATATAGGTTGTTTTTGA+AGG - chr1_2:77597080-77597099 Msa0094380:intron 20.0%
!!! ATATATAGGTTGTTTTTGAA+GGG - chr1_2:77597081-77597100 Msa0094380:intron 20.0%
!! TTAGTGTAATGTGATTTTGA+TGG - chr1_2:77594519-77594538 Msa0094380:CDS 25.0%
! TAAACAACGAGTGAAAAATA+TGG - chr1_2:77594663-77594682 Msa0094380:CDS 25.0%
! TTCTACAATATTCTTAACTC+TGG - chr1_2:77594749-77594768 Msa0094380:CDS 25.0%
! TCTACAATATTCTTAACTCT+GGG - chr1_2:77594750-77594769 Msa0094380:CDS 25.0%
!! GTTTGATTTCTGTTTAATCA+CGG + chr1_2:77594819-77594838 None:intergenic 25.0%
! GTGATTAAACAGAAATCAAA+CGG - chr1_2:77594818-77594837 Msa0094380:intron 25.0%
! TATGCTGTTAATTATCCAAA+TGG - chr1_2:77595073-77595092 Msa0094380:CDS 25.0%
!! TTAGAGTAATGTGATTTTGA+TGG - chr1_2:77595366-77595385 Msa0094380:intron 25.0%
! TTCTTATGCTTGCAATAATA+TGG + chr1_2:77595446-77595465 None:intergenic 25.0%
! AAACAACGAGTCAAAAATAT+TGG - chr1_2:77595508-77595527 Msa0094380:intron 25.0%
!!! TATTGTTTTTTTCCCTTCAA+TGG - chr1_2:77595554-77595573 Msa0094380:intron 25.0%
! TTCTACAATATTCTTAACTC+TGG - chr1_2:77594749-77594768 Msa0094380:CDS 25.0%
! TCTACAATATTCTTAACTCT+GGG - chr1_2:77594750-77594769 Msa0094380:CDS 25.0%
! TAATCAATAGCATAAGCATT+CGG + chr1_2:77596014-77596033 None:intergenic 25.0%
!! TATGCTATTGATTATCCAAA+TGG - chr1_2:77596020-77596039 Msa0094380:CDS 25.0%
! ATCATATAAAAGACAAGATC+AGG + chr1_2:77596211-77596230 None:intergenic 25.0%
!!! AGGCATAATTGATTTGATTA+AGG - chr1_2:77596418-77596437 Msa0094380:intron 25.0%
! CATGTGGATATAATTCAAAT+TGG - chr1_2:77596526-77596545 Msa0094380:intron 25.0%
! CATTTAAATCAATTTGAAGG+AGG + chr1_2:77596629-77596648 None:intergenic 25.0%
! GCTCATTTAAATCAATTTGA+AGG + chr1_2:77596632-77596651 None:intergenic 25.0%
! CACATTCATTCTCTATATAT+AGG - chr1_2:77597067-77597086 Msa0094380:intron 25.0%
!!! TATATAGGTTGTTTTTGAAG+GGG - chr1_2:77597082-77597101 Msa0094380:intron 25.0%
!!! TTGGTGGATAAAGTATTTTT+GGG + chr1_2:77597193-77597212 None:intergenic 25.0%
!!! TTTGGTGGATAAAGTATTTT+TGG + chr1_2:77597194-77597213 None:intergenic 25.0%
! ATTAAACAAGAATGACACAT+TGG - chr1_2:77597269-77597288 Msa0094380:intron 25.0%
CTCTTATGCTTGCAATAATA+TGG + chr1_2:77594600-77594619 None:intergenic 30.0%
!!! ATTGTTTTTTATCCCTTCGA+TGG - chr1_2:77594712-77594731 Msa0094380:CDS 30.0%
CTGTTAATTATCCAAATGGA+AGG - chr1_2:77595077-77595096 Msa0094380:CDS 30.0%
! TCAACATGATTCATAGGTTT+TGG + chr1_2:77595226-77595245 None:intergenic 30.0%
ACATTCTCAACATGATTCAT+AGG + chr1_2:77595232-77595251 None:intergenic 30.0%
TGGAGTCGACAAATTTATTT+AGG - chr1_2:77595528-77595547 Msa0094380:intron 30.0%
!! CAGCTTTTATTTCCATTGAA+GGG + chr1_2:77595569-77595588 None:intergenic 30.0%
!! ACAGCTTTTATTTCCATTGA+AGG + chr1_2:77595570-77595589 None:intergenic 30.0%
TTTAATCACAGATCCATACA+CGG + chr1_2:77595649-77595668 None:intergenic 30.0%
! CTATTGATTATCCAAATGGA+AGG - chr1_2:77596024-77596043 Msa0094380:CDS 30.0%
!!! TCACCTTGTTTTTGGATATT+TGG + chr1_2:77596050-77596069 None:intergenic 30.0%
TTACTTTGATACCATTGAAG+TGG - chr1_2:77596255-77596274 Msa0094380:intron 30.0%
! TCTTGTTATGGTTCTGTAAT+TGG - chr1_2:77596336-77596355 Msa0094380:intron 30.0%
! TTATGGTTCTGTAATTGGTT+TGG - chr1_2:77596341-77596360 Msa0094380:intron 30.0%
! TATGGTTCTGTAATTGGTTT+GGG - chr1_2:77596342-77596361 Msa0094380:intron 30.0%
!!! GCATCATTTTTTGAGTAAAC+CGG - chr1_2:77596440-77596459 Msa0094380:intron 30.0%
!!! CATCATTTTTTGAGTAAACC+GGG - chr1_2:77596441-77596460 Msa0094380:intron 30.0%
! ATCAGAGTTTAGAATTGCAA+TGG + chr1_2:77596739-77596758 None:intergenic 30.0%
! TCTCCATATCTTTCACATTT+TGG + chr1_2:77597212-77597231 None:intergenic 30.0%
AGAAGGAGAAAAAGAGAAAA+AGG - chr1_2:77597232-77597251 Msa0094380:intron 30.0%
!! ATTGTCCTTGTTGTTTAAGA+TGG + chr1_2:77597520-77597539 None:intergenic 30.0%
! TTCTCAAGTTTGTTCATATC+AGG + chr1_2:77597594-77597613 None:intergenic 30.0%
! TCAACACGATTCATAGGTTT+TGG + chr1_2:77594379-77594398 None:intergenic 35.0%
ACATTCTCAACACGATTCAT+AGG + chr1_2:77594385-77594404 None:intergenic 35.0%
!! CAGCTTTTATTTCCATCGAA+GGG + chr1_2:77594727-77594746 None:intergenic 35.0%
!! ACAGCTTTTATTTCCATCGA+AGG + chr1_2:77594728-77594747 None:intergenic 35.0%
TTTAATCACGGATCCATACA+CGG + chr1_2:77594807-77594826 None:intergenic 35.0%
AAACAGAAATCAAACGGTTC+TGG - chr1_2:77594824-77594843 Msa0094380:intron 35.0%
! TTTGTGTTACTGTTGCACTT+GGG + chr1_2:77594902-77594921 None:intergenic 35.0%
! ATTTGTGTTACTGTTGCACT+TGG + chr1_2:77594903-77594922 None:intergenic 35.0%
AAGTGCAACAGTAACACAAA+TGG - chr1_2:77594902-77594921 Msa0094380:intron 35.0%
AATGTTTATGTGCCTAGTGT+TGG - chr1_2:77595247-77595266 Msa0094380:CDS 35.0%
TAGAAGAAATCAAACGGTTC+TGG - chr1_2:77595669-77595688 Msa0094380:intron 35.0%
!! ACGGTTCTGGAAATTTCAAT+CGG - chr1_2:77595682-77595701 Msa0094380:intron 35.0%
AGGCCAAATATCCAAAAACA+AGG - chr1_2:77596044-77596063 Msa0094380:CDS 35.0%
GTCAATGAAGTTCATTCACA+TGG + chr1_2:77596073-77596092 None:intergenic 35.0%
!! AGATTTTAGCCTCGTTTTCT+TGG - chr1_2:77596132-77596151 Msa0094380:CDS 35.0%
GAAACTTAACCAAGAAAACG+AGG + chr1_2:77596144-77596163 None:intergenic 35.0%
GCAACTAAAATCCACTTCAA+TGG + chr1_2:77596269-77596288 None:intergenic 35.0%
!! CTGTAATTGGTTTGGGTAAT+TGG - chr1_2:77596349-77596368 Msa0094380:intron 35.0%
! TTGGCTAGTTCATCTGATTA+AGG - chr1_2:77596398-77596417 Msa0094380:intron 35.0%
TTGAAGGGGATGAAAAAACA+TGG - chr1_2:77597096-77597115 Msa0094380:intron 35.0%
GGGATGAAAAAACATGGAAA+GGG - chr1_2:77597102-77597121 Msa0094380:intron 35.0%
!!! GGATAAAGTATTTTTGGGCA+TGG + chr1_2:77597188-77597207 None:intergenic 35.0%
! CCATATCTTTCACATTTTGG+TGG + chr1_2:77597209-77597228 None:intergenic 35.0%
CCACCAAAATGTGAAAGATA+TGG - chr1_2:77597206-77597225 Msa0094380:intron 35.0%
TGTGAAAGATATGGAGAAGA+AGG - chr1_2:77597215-77597234 Msa0094380:intron 35.0%
! AATCGGTTCTACAATTCCTT+CGG - chr1_2:77597419-77597438 Msa0094380:intron 35.0%
!! TTGGTGTTGCTTTATCCAAT+CGG - chr1_2:77597558-77597577 Msa0094380:CDS 35.0%
!! AAGTGTTGATGTTCCTGTGT+TGG - chr1_2:77594309-77594328 Msa0094380:CDS 40.0%
! AATGTTTCTGTGCCTAGTGT+TGG - chr1_2:77594400-77594419 Msa0094380:CDS 40.0%
AACAATCGAACCTGAACAGA+AGG + chr1_2:77594445-77594464 None:intergenic 40.0%
! TTTGCCTGATTTTCCGTGTA+TGG - chr1_2:77594791-77594810 Msa0094380:CDS 40.0%
! GGTGATGGCATCTTATTCTT+CGG + chr1_2:77594860-77594879 None:intergenic 40.0%
CTGAACATGTTTGGCATCAT+TGG + chr1_2:77595026-77595045 None:intergenic 40.0%
TCACCTTGTTCTTGGGTATT+TGG + chr1_2:77595103-77595122 None:intergenic 40.0%
AACAAACGAACCTGAACAGA+AGG + chr1_2:77595292-77595311 None:intergenic 40.0%
! TTTGCCTGATTTTCCGTGTA+TGG - chr1_2:77594791-77594810 Msa0094380:CDS 40.0%
AGATCCATACACGGAAAATC+AGG + chr1_2:77595640-77595659 None:intergenic 40.0%
GGATTCTCACCATTAGGATA+AGG + chr1_2:77595897-77595916 None:intergenic 40.0%
CTGAACATGTTTGGCATCAA+TGG + chr1_2:77595973-77595992 None:intergenic 40.0%
! TGGATATTTGGCCTTCCATT+TGG + chr1_2:77596038-77596057 None:intergenic 40.0%
!!! TCACATGGTCACCTTGTTTT+TGG + chr1_2:77596058-77596077 None:intergenic 40.0%
!! AAGATTCTAGCTTAACCCTG+TGG - chr1_2:77596164-77596183 Msa0094380:CDS 40.0%
!!! TTAACCCTGTGGTGCTTTTT+TGG - chr1_2:77596175-77596194 Msa0094380:CDS 40.0%
!!! TAACCCTGTGGTGCTTTTTT+GGG - chr1_2:77596176-77596195 Msa0094380:CDS 40.0%
!! ATACCCAAAAAAGCACCACA+GGG + chr1_2:77596182-77596201 None:intergenic 40.0%
!! AATACCCAAAAAAGCACCAC+AGG + chr1_2:77596183-77596202 None:intergenic 40.0%
GAACAACAACAGGAGAAAAC+TGG - chr1_2:77596687-77596706 Msa0094380:CDS 40.0%
GGGGATGAAAAAACATGGAA+AGG - chr1_2:77597101-77597120 Msa0094380:intron 40.0%
ACACTTTGTAGCTCAACTGA+AGG + chr1_2:77597327-77597346 None:intergenic 40.0%
GAAGGAATTGTAGAACCGAT+TGG + chr1_2:77597420-77597439 None:intergenic 40.0%
! TTTAAGATGGCAGTGTCTTG+AGG + chr1_2:77597507-77597526 None:intergenic 40.0%
CACTGCCATCTTAAACAACA+AGG - chr1_2:77597512-77597531 Msa0094380:CDS 40.0%
TGGATAAAGCAACACCAACT+GGG + chr1_2:77597556-77597575 None:intergenic 40.0%
TTGGATAAAGCAACACCAAC+TGG + chr1_2:77597557-77597576 None:intergenic 40.0%
!! GATGTTCCTGTGTTGGTTGT+TGG - chr1_2:77594316-77594335 Msa0094380:CDS 45.0%
TTGGTTCCAACAACCAACAC+AGG + chr1_2:77594325-77594344 None:intergenic 45.0%
GTTTGAGCATGAGAAAGAGC+TGG + chr1_2:77594355-77594374 None:intergenic 45.0%
! GCGAGTCGACAAATCTGTTT+TGG - chr1_2:77594685-77594704 Msa0094380:CDS 45.0%
GGATCCATACACGGAAAATC+AGG + chr1_2:77594798-77594817 None:intergenic 45.0%
! TGGGTATTTGGCCTTCCATT+TGG + chr1_2:77595091-77595110 None:intergenic 45.0%
AGGCCAAATACCCAAGAACA+AGG - chr1_2:77595097-77595116 Msa0094380:CDS 45.0%
CACATGGTCACCTTGTTCTT+GGG + chr1_2:77595110-77595129 None:intergenic 45.0%
TCACATGGTCACCTTGTTCT+TGG + chr1_2:77595111-77595130 None:intergenic 45.0%
CAAGGTGACCATGTGAATCA+TGG - chr1_2:77595115-77595134 Msa0094380:CDS 45.0%
GTGACCATGTGAATCATGGT+CGG - chr1_2:77595119-77595138 Msa0094380:CDS 45.0%
!! AACACAGGAGCATCAACACT+AGG + chr1_2:77595157-77595176 None:intergenic 45.0%
!! TAGTGTTGATGCTCCTGTGT+TGG - chr1_2:77595156-77595175 Msa0094380:CDS 45.0%
TTGGTTCCAACAACCAACAC+AGG + chr1_2:77594325-77594344 None:intergenic 45.0%
GTTTGAGCATCAGAAAGAGC+CGG + chr1_2:77595202-77595221 None:intergenic 45.0%
!! TTATGTGCCTAGTGTTGGTC+AGG - chr1_2:77595252-77595271 Msa0094380:CDS 45.0%
TCCTATAGCTCCTTCTGTTC+AGG - chr1_2:77595279-77595298 Msa0094380:CDS 45.0%
ACCTGAACAGAAGGAGCTAT+AGG + chr1_2:77595283-77595302 None:intergenic 45.0%
! CATTTGTGTTGTTGCGCTTG+GGG + chr1_2:77595746-77595765 None:intergenic 45.0%
! CCATTTGTGTTGTTGCGCTT+GGG + chr1_2:77595747-77595766 None:intergenic 45.0%
! TTGCTCCGAATTTTCGTCCT+AGG - chr1_2:77595817-77595836 Msa0094380:intron 45.0%
! TGCTCCGAATTTTCGTCCTA+GGG - chr1_2:77595818-77595837 Msa0094380:intron 45.0%
GGTACCCTAGGACGAAAATT+CGG + chr1_2:77595825-77595844 None:intergenic 45.0%
TATGCAGGAACAGCAATGTG+AGG + chr1_2:77595852-77595871 None:intergenic 45.0%
TTAGGATAAGGTCCTGAACC+AGG + chr1_2:77595885-77595904 None:intergenic 45.0%
GGTTCAGGACCTTATCCTAA+TGG - chr1_2:77595885-77595904 Msa0094380:CDS 45.0%
GGCTTAGGATTCTCACCATT+AGG + chr1_2:77595903-77595922 None:intergenic 45.0%
TGTTCCATGCTATGCTCAGA+GGG + chr1_2:77596672-77596691 None:intergenic 45.0%
TTGTTCCATGCTATGCTCAG+AGG + chr1_2:77596673-77596692 None:intergenic 45.0%
GCATAGCATGGAACAACAAC+AGG - chr1_2:77596677-77596696 Msa0094380:CDS 45.0%
!! TGGCACCGATATCATTGAGT+CGG - chr1_2:77596707-77596726 Msa0094380:CDS 45.0%
ACCACCCGACTCAATGATAT+CGG + chr1_2:77596715-77596734 None:intergenic 45.0%
AAAGTCATGCCCCAAGGAAA+GGG - chr1_2:77596826-77596845 Msa0094380:CDS 45.0%
AAAAACATGGAAAGGGACGC+TGG - chr1_2:77597109-77597128 Msa0094380:intron 45.0%
GCATGGCTAGCAATTTGAGT+TGG + chr1_2:77597171-77597190 None:intergenic 45.0%
CAAAGTGTGATTCCTCCTCA+AGG - chr1_2:77597339-77597358 Msa0094380:intron 45.0%
TCTGTCTGTTGCATTCCTTG+AGG + chr1_2:77597357-77597376 None:intergenic 45.0%
ATTGGCAGCAAGCACAACAT+AGG + chr1_2:77597402-77597421 None:intergenic 45.0%
! ATGTTGTGCTTGCTGCCAAT+CGG - chr1_2:77597402-77597421 Msa0094380:intron 45.0%
!! TCGTTTTGTTGCTGAACCGA+AGG + chr1_2:77597438-77597457 None:intergenic 45.0%
TCCTTTAGTCACTGCTCCTA+TGG - chr1_2:77597464-77597483 Msa0094380:CDS 45.0%
TCCATAGGAGCAGTGACTAA+AGG + chr1_2:77597468-77597487 None:intergenic 45.0%
GGAGTCTCATGTTGTTCCAT+AGG + chr1_2:77597483-77597502 None:intergenic 45.0%
TGACAACTTGCAAACCCAGT+TGG - chr1_2:77597539-77597558 Msa0094380:CDS 45.0%
! TCAGGAAGTGTAGAACCGAT+TGG + chr1_2:77597576-77597595 None:intergenic 45.0%
AGAAAGAGCTGGCGAAGACT+TGG + chr1_2:77594344-77594363 None:intergenic 50.0%
!! TTCTGTGCCTAGTGTTGGTC+AGG - chr1_2:77594405-77594424 Msa0094380:CDS 50.0%
TCCTAGAGCTCCTTCTGTTC+AGG - chr1_2:77594432-77594451 Msa0094380:CDS 50.0%
ACCTGAACAGAAGGAGCTCT+AGG + chr1_2:77594436-77594455 None:intergenic 50.0%
TTACTGTTGCACTTGGGACC+TGG + chr1_2:77594896-77594915 None:intergenic 50.0%
ATCGTCACCACAGGAAAGTG+AGG + chr1_2:77594932-77594951 None:intergenic 50.0%
GGCTTAGGATTCTCGCCATT+AGG + chr1_2:77594956-77594975 None:intergenic 50.0%
GAATCCTAAGCCTGTATCCC+CGG - chr1_2:77594964-77594983 Msa0094380:intron 50.0%
TTGGCATCATTGGCATGAGC+AGG + chr1_2:77595016-77595035 None:intergenic 50.0%
TGCCAAACATGTTCAGCCTC+CGG - chr1_2:77595030-77595049 Msa0094380:intron 50.0%
GCATTCAGATCTCCTTGCAC+CGG + chr1_2:77595052-77595071 None:intergenic 50.0%
GATGCCGACCATGATTCACA+TGG + chr1_2:77595126-77595145 None:intergenic 50.0%
!! GATGCTCCTGTGTTGGTTGT+TGG - chr1_2:77595163-77595182 Msa0094380:CDS 50.0%
TGTTGGAACCAAGTCTTCGC+CGG - chr1_2:77594333-77594352 Msa0094380:CDS 50.0%
GGCTTTCGATAGCATGGTGA+TGG + chr1_2:77595720-77595739 None:intergenic 50.0%
TCACCATGCTATCGAAAGCC+AGG - chr1_2:77595720-77595739 Msa0094380:intron 50.0%
CCCAAGCGCAACAACACAAA+TGG - chr1_2:77595744-77595763 Msa0094380:intron 50.0%
! GCCATTTGTGTTGTTGCGCT+TGG + chr1_2:77595748-77595767 None:intergenic 50.0%
CGAAAATTCGGAGCAACAGG+CGG + chr1_2:77595813-77595832 None:intergenic 50.0%
GGACGAAAATTCGGAGCAAC+AGG + chr1_2:77595816-77595835 None:intergenic 50.0%
TATGCTTTCCCACCTGGTTC+AGG - chr1_2:77595870-77595889 Msa0094380:CDS 50.0%
GATAAGGTCCTGAACCAGGT+GGG + chr1_2:77595881-77595900 None:intergenic 50.0%
GAATCCTAAGCCTGTATCCC+CGG - chr1_2:77594964-77594983 Msa0094380:intron 50.0%
TTGGCATCAATGGCATGAGC+AGG + chr1_2:77595963-77595982 None:intergenic 50.0%
TGCCAAACATGTTCAGCCTC+CGG - chr1_2:77595030-77595049 Msa0094380:intron 50.0%
TGAGTAAACCGGGTGATGCT+AGG - chr1_2:77596451-77596470 Msa0094380:intron 50.0%
GAGTAAACCGGGTGATGCTA+GGG - chr1_2:77596452-77596471 Msa0094380:intron 50.0%
TCTTAGTCCCTAGCATCACC+CGG + chr1_2:77596462-77596481 None:intergenic 50.0%
TGCTATGCTCAGAGGGATCT+TGG + chr1_2:77596665-77596684 None:intergenic 50.0%
AGATCCCTCTGAGCATAGCA+TGG - chr1_2:77596665-77596684 Msa0094380:CDS 50.0%
!! GGCACCGATATCATTGAGTC+GGG - chr1_2:77596708-77596727 Msa0094380:CDS 50.0%
ACCGATATCATTGAGTCGGG+TGG - chr1_2:77596711-77596730 Msa0094380:CDS 50.0%
CTTGGGGCATGACTTTCTTC+TGG + chr1_2:77596822-77596841 None:intergenic 50.0%
CAGAAGAAAGTCATGCCCCA+AGG - chr1_2:77596820-77596839 Msa0094380:CDS 50.0%
GAAAGTCATGCCCCAAGGAA+AGG - chr1_2:77596825-77596844 Msa0094380:CDS 50.0%
TGTCCAATGCCCTTTCCTTG+GGG + chr1_2:77596838-77596857 None:intergenic 50.0%
CTGTCCAATGCCCTTTCCTT+GGG + chr1_2:77596839-77596858 None:intergenic 50.0%
TCTGTCCAATGCCCTTTCCT+TGG + chr1_2:77596840-77596859 None:intergenic 50.0%
!! AAGGAAAGGGCATTGGACAG+AGG - chr1_2:77596839-77596858 Msa0094380:CDS 50.0%
GTCTGTTGCATTCCTTGAGG+AGG + chr1_2:77597354-77597373 None:intergenic 50.0%
AAGATGGCAGTGTCTTGAGG+AGG + chr1_2:77597504-77597523 None:intergenic 50.0%
TGAGAAGATGCGCAGCTTGT+TGG - chr1_2:77597608-77597627 Msa0094380:CDS 50.0%
GGATCAGAGGAGGAAAGCAG+AGG - chr1_2:77594269-77594288 Msa0094380:CDS 55.0%
GGAGCAACCTGACCAACACT+AGG + chr1_2:77594415-77594434 None:intergenic 55.0%
TGGCATGCCTCACTTTCCTG+TGG - chr1_2:77594922-77594941 Msa0094380:intron 55.0%
! CCATTAGGCATCGTCACCAC+AGG + chr1_2:77594941-77594960 None:intergenic 55.0%
! CCTGTGGTGACGATGCCTAA+TGG - chr1_2:77594938-77594957 Msa0094380:intron 55.0%
AAACCTTGTCCTGCTGCTGC+CGG + chr1_2:77594986-77595005 None:intergenic 55.0%
GCATCATTGGCATGAGCAGG+TGG + chr1_2:77595013-77595032 None:intergenic 55.0%
CACCGGAGGCTGAACATGTT+TGG + chr1_2:77595035-77595054 None:intergenic 55.0%
TTCAGATCTCCTTGCACCGG+AGG + chr1_2:77595049-77595068 None:intergenic 55.0%
AGAAAGAGCCGGCGAAGACT+TGG + chr1_2:77595191-77595210 None:intergenic 55.0%
GGAGCAACCTGACCAACACT+AGG + chr1_2:77594415-77594434 None:intergenic 55.0%
TGGCACGCTTCACTTTCCTG+TGG - chr1_2:77595764-77595783 Msa0094380:intron 55.0%
TTCACTTTCCTGTGGCGACG+AGG - chr1_2:77595772-77595791 Msa0094380:intron 55.0%
ACAGGCGGCTGCTGATGATA+AGG + chr1_2:77595798-77595817 None:intergenic 55.0%
!! ATGTGAGGTGGAGGTACCCT+AGG + chr1_2:77595837-77595856 None:intergenic 55.0%
GGAACAGCAATGTGAGGTGG+AGG + chr1_2:77595846-77595865 None:intergenic 55.0%
GCAGGAACAGCAATGTGAGG+TGG + chr1_2:77595849-77595868 None:intergenic 55.0%
! CCAGGTGGGAAAGCATATGC+AGG + chr1_2:77595867-77595886 None:intergenic 55.0%
CCTGCATATGCTTTCCCACC+TGG - chr1_2:77595864-77595883 Msa0094380:CDS 55.0%
GGATAAGGTCCTGAACCAGG+TGG + chr1_2:77595882-77595901 None:intergenic 55.0%
GCATCAATGGCATGAGCAGG+TGG + chr1_2:77595960-77595979 None:intergenic 55.0%
CACCGGAGGCTGAACATGTT+TGG + chr1_2:77595035-77595054 None:intergenic 55.0%
GCATTCGGATCTCCTTGCAC+CGG + chr1_2:77595999-77596018 None:intergenic 55.0%
GAGGGATCTTGGACTGAAGC+TGG + chr1_2:77596654-77596673 None:intergenic 55.0%
! ATGCCCCAAGGAAAGGGCAT+TGG - chr1_2:77596832-77596851 Msa0094380:CDS 55.0%
GGCTTTCGATAGCGCGGTGA+TGG + chr1_2:77594875-77594894 None:intergenic 60.0%
TCACCGCGCTATCGAAAGCC+AGG - chr1_2:77594875-77594894 Msa0094380:intron 60.0%
! GGACCTGGCTTTCGATAGCG+CGG + chr1_2:77594881-77594900 None:intergenic 60.0%
AACCTTGTCCTGCTGCTGCC+GGG + chr1_2:77594985-77595004 None:intergenic 60.0%
CATGTTCAGCCTCCGGTGCA+AGG - chr1_2:77595037-77595056 Msa0094380:CDS 60.0%
! GGGCCTGGCTTTCGATAGCA+TGG + chr1_2:77595726-77595745 None:intergenic 60.0%
TGATAAGGCCTCGTCGCCAC+AGG + chr1_2:77595783-77595802 None:intergenic 60.0%
TCCTAAGCCTGTATCCCCGG+CGG - chr1_2:77594967-77594986 Msa0094380:intron 60.0%
AAACCTTGTCCTGCTGCCGC+CGG + chr1_2:77595933-77595952 None:intergenic 60.0%
CATGTTCAGCCTCCGGTGCA+AGG - chr1_2:77595037-77595056 Msa0094380:CDS 60.0%
TTCGGATCTCCTTGCACCGG+AGG + chr1_2:77595996-77596015 None:intergenic 60.0%
GCTGCCGGGGATACAGGCTT+AGG + chr1_2:77594971-77594990 None:intergenic 65.0%
ACCTTGTCCTGCTGCTGCCG+GGG + chr1_2:77594984-77595003 None:intergenic 65.0%
! GTGTTGTTGCGCTTGGGGCC+TGG + chr1_2:77595741-77595760 None:intergenic 65.0%
AACCTTGTCCTGCTGCCGCC+GGG + chr1_2:77595932-77595951 None:intergenic 65.0%
CCTGCTGCTGCCGGGGATAC+AGG + chr1_2:77594977-77594996 None:intergenic 70.0%
CCTGTATCCCCGGCAGCAGC+AGG - chr1_2:77594974-77594993 Msa0094380:intron 70.0%
TCCCCGGCAGCAGCAGGACA+AGG - chr1_2:77594980-77594999 Msa0094380:intron 70.0%
GCCGCCGGGGATACAGGCTT+AGG + chr1_2:77595918-77595937 None:intergenic 70.0%
ACCTTGTCCTGCTGCCGCCG+GGG + chr1_2:77595931-77595950 None:intergenic 70.0%
CCTGCTGCCGCCGGGGATAC+AGG + chr1_2:77595924-77595943 None:intergenic 75.0%
CCTGTATCCCCGGCGGCAGC+AGG - chr1_2:77595921-77595940 Msa0094380:CDS 75.0%
TCCCCGGCGGCAGCAGGACA+AGG - chr1_2:77595927-77595946 Msa0094380:CDS 75.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 77594262 77597644 77594262 ID=Msa0094380;Name=Msa0094380
chr1_2 mRNA 77594262 77597644 77594262 ID=Msa0094380-mRNA-1;Parent=Msa0094380;Name=Msa0094380-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|1|1|5|0|630
chr1_2 exon 77597453 77597644 77597453 ID=Msa0094380-mRNA-1:exon:27551;Parent=Msa0094380-mRNA-1
chr1_2 exon 77596606 77597076 77596606 ID=Msa0094380-mRNA-1:exon:27550;Parent=Msa0094380-mRNA-1
chr1_2 exon 77595841 77596234 77595841 ID=Msa0094380-mRNA-1:exon:27549;Parent=Msa0094380-mRNA-1
chr1_2 exon 77595035 77595314 77595035 ID=Msa0094380-mRNA-1:exon:27548;Parent=Msa0094380-mRNA-1
chr1_2 exon 77594262 77594817 77594262 ID=Msa0094380-mRNA-1:exon:27547;Parent=Msa0094380-mRNA-1
chr1_2 CDS 77597453 77597644 77597453 ID=Msa0094380-mRNA-1:cds;Parent=Msa0094380-mRNA-1
chr1_2 CDS 77596606 77597076 77596606 ID=Msa0094380-mRNA-1:cds;Parent=Msa0094380-mRNA-1
chr1_2 CDS 77595841 77596234 77595841 ID=Msa0094380-mRNA-1:cds;Parent=Msa0094380-mRNA-1
chr1_2 CDS 77595035 77595314 77595035 ID=Msa0094380-mRNA-1:cds;Parent=Msa0094380-mRNA-1
chr1_2 CDS 77594262 77594817 77594262 ID=Msa0094380-mRNA-1:cds;Parent=Msa0094380-mRNA-1
Gene Sequence

>Msa0094380

ATGGTGAGGATCAGAGGAGGAAAGCAGAGGAAAAGTGTTGATGAGAAAAGTGTTGATGTTCCTGTGTTGGTTGTTGGAACCAAGTCTTCGCCAGCTCTTTCTCATGCTCAAACTCCAAAACCTATGAATCGTGTTGAGAATGTTTCTGTGCCTAGTGTTGGTCAGGTTGCTCCTAGAGCTCCTTCTGTTCAGAAATCAAACGGTTCTGGAAACTTCAATCCGAAGAATAAGATGCCATCACCGCGCTATCGAAAGCCAGGTCCCAAGTGCAACAGTAACACAAATGGCATGCCTCACTTTCCTGTGGTGACGATGCCTAATGGCGAGAATCCTAAGCCTGTATCCCCGGCAGCAGCAGGACAAGGTTTTACTCCACCTGCTCATGCCAATGATGCCAAACATGTTCAGCCTCCGGTGCAAGGAGATCTGAATGCTTATGCTGTTAATTATCCAAATGGAAGGCCAAATACCCAAGAACAAGGTGACCATGTGAATCATGGTCGGCATCATCAAAGACCTAGTGTTGATGCTCCTGTGTTGGTTGTTGGAACCAAGTCTTCGCCGGCTCTTTCTGATGCTCAAACTCCAAAACCTATGAATCATGTTGAGAATGTTTATGTGCCTAGTGTTGGTCAGGTTGCTCCTATAGCTCCTTCTGTTCAGAAGAAATCAAACGGTTCTGGAAATTTCAATCGGATGAATAAGCTGCCATCACCATGCTATCGAAAGCCAGGCCCCAAGCGCAACAACACAAATGGCACGCTTCACTTTCCTGTGGCGACGAGGCCTTATCATCAGCAGCCGCCTGTTGCTCCGAATTTTCGTCCTAGGGTACCTCCACCTCACATTGCTGTTCCTGCATATGCTTTCCCACCTGGTTCAGGACCTTATCCTAATGGTGAGAATCCTAAGCCTGTATCCCCGGCGGCAGCAGGACAAGGTTTTACTCCACCTGCTCATGCCATTGATGCCAAACATGTTCAGCCTCCGGTGCAAGGAGATCCGAATGCTTATGCTATTGATTATCCAAATGGAAGGCCAAATATCCAAAAACAAGAAAGCATGGAAGAAAGAAAAAGTATACAATCATCCCTCCTTCAAATTGATTTAAATGAGCCAGCTTCAGTCCAAGATCCCTCTGAGCATAGCATGGAACAACAACAGGAGAAAACTGGCACCGATATCATTGAGTCGGGTGGTGCCATTGCAATTCTAAACTCTGATGATAATAACGTCACAACTCTAAACTCTGACGAAAATAACTTAATTCAAGCTGAGTCAGTACCAGAAGAAAGTCATGCCCCAAGGAAAGGGCATTGGACAGAGGATGAACACAAGTTGTTTTTGAAGGGGATGAAAAAACATGGAAAGGGACGCTGGAAAAATATTTCTAAAGAATTTGTGGTGACAAAAACTCCAACTCAAATTGCTAGCCATGCCCAAAAATACTTTATCCACCAAAATGTGAAAGATATGGAGAAGAAGGAGAAAAAGAGAAAAAGGATTCACGACACAACATTAAACAAGAATGACACATTGGTCACTGTCGCTGTTGATCAAGAAGATGAGATTCCTTCAGTTGAGCTACAAAGTGTGATTCCTCCTCAAGGAATGCAACAGACAGAAACACAACAGAATGAGATTTCTCCTATGTTGTGCTTGCTGCCAATCGGTTCTACAATTCCTTCGGTTCAGCAACAAAACGAGCTTACTCCTTTAGTCACTGCTCCTATGGAACAACATGAGACTCCTCCTCAAGACACTGCCATCTTAAACAACAAGGACAATGACAACTTGCAAACCCAGTTGGTGTTGCTTTATCCAATCGGTTCTACACTTCCTGATATGAACAAACTTGAGAAGATGCGCAGCTTGTTGGCAAAAGAACTTTGA
Protein sequence

>Msa0094380

MVRIRGGKQRKSVDEKSVDVPVLVVGTKSSPALSHAQTPKPMNRVENVSVPSVGQVAPRAPSVQKSNGSGNFNPKNKMPSPRYRKPGPKCNSNTNGMPHFPVVTMPNGENPKPVSPAAAGQGFTPPAHANDAKHVQPPVQGDLNAYAVNYPNGRPNTQEQGDHVNHGRHHQRPSVDAPVLVVGTKSSPALSDAQTPKPMNHVENVYVPSVGQVAPIAPSVQKKSNGSGNFNRMNKLPSPCYRKPGPKRNNTNGTLHFPVATRPYHQQPPVAPNFRPRVPPPHIAVPAYAFPPGSGPYPNGENPKPVSPAAAGQGFTPPAHAIDAKHVQPPVQGDPNAYAIDYPNGRPNIQKQESMEERKSIQSSLLQIDLNEPASVQDPSEHSMEQQQEKTGTDIIESGGAIAILNSDDNNVTTLNSDENNLIQAESVPEESHAPRKGHWTEDEHKLFLKGMKKHGKGRWKNISKEFVVTKTPTQIASHAQKYFIHQNVKDMEKKEKKRKRIHDTTLNKNDTLVTVAVDQEDEIPSVELQSVIPPQGMQQTETQQNEISPMLCLLPIGSTIPSVQQQNELTPLVTAPMEQHETPPQDTAILNNKDNDNLQTQLVLLYPIGSTLPDMNKLEKMRSLLAKEL*