Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0094890 | XP_003597853.1 | 86.747 | 166 | 20 | 2 | 1 | 164 | 1 | 166 | 2.99e-94 | 282 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0094890 | G7IUS5 | 86.747 | 166 | 20 | 2 | 1 | 164 | 1 | 166 | 1.43e-94 | 282 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0094890 | TF | C3H |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0094890 | MtrunA17_Chr2g0332631 | 83.838 | 99 | 14 | 2 | 1 | 97 | 1 | 99 | 1.32e-51 | 162 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 32 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGAGTCTTAATCCTCATA+TGG | 0.366307 | 1_2:+78323955 | None:intergenic |
| TCTGCTGCTGCTACAACTAA+TGG | 0.397952 | 1_2:-78322546 | Msa0094890:CDS |
| GCCATGTGCATAGTTGCATT+GGG | 0.419796 | 1_2:+78323890 | None:intergenic |
| TGAACATAATGAAGAGGTAG+AGG | 0.427658 | 1_2:+78323762 | None:intergenic |
| AACGACCTCAGAACAGCAAC+AGG | 0.451715 | 1_2:-78323864 | Msa0094890:CDS |
| AAAATTCACAAACCCATATG+AGG | 0.470113 | 1_2:-78323968 | Msa0094890:CDS |
| TCATTCGTCTCTATGCTGAT+TGG | 0.477473 | 1_2:-78322369 | Msa0094890:CDS |
| ACTACCTCTTTACATAAGAA+TGG | 0.478765 | 1_2:-78322438 | Msa0094890:CDS |
| ATGAACATTCTACAGAATCT+TGG | 0.480970 | 1_2:+78323840 | None:intergenic |
| AGCCATGTGCATAGTTGCAT+TGG | 0.488645 | 1_2:+78323889 | None:intergenic |
| CTGAGTCTTAATCCTCATAT+GGG | 0.496970 | 1_2:+78323956 | None:intergenic |
| CATAAGAATGGACCGTATGC+TGG | 0.500563 | 1_2:-78322426 | Msa0094890:CDS |
| CGGTCCATTCTTATGTAAAG+AGG | 0.523765 | 1_2:+78322434 | None:intergenic |
| ACATAATGAAGAGGTAGAGG+AGG | 0.543147 | 1_2:+78323765 | None:intergenic |
| GTAGAGGAGGAGTTGCATGA+AGG | 0.548027 | 1_2:+78323778 | None:intergenic |
| TGATACAAAATGCAGAATGC+AGG | 0.549025 | 1_2:-78322581 | Msa0094890:CDS |
| CTGACAAAACACAATGCAAA+GGG | 0.552604 | 1_2:-78322392 | Msa0094890:CDS |
| TTGGTCCTGTTGCTGTTCTG+AGG | 0.555812 | 1_2:+78323859 | None:intergenic |
| ATGGCTGAGGTATTTGTAGC+AGG | 0.556435 | 1_2:+78322471 | None:intergenic |
| CCCCAATGCAACTATGCACA+TGG | 0.558064 | 1_2:-78323891 | Msa0094890:CDS |
| GTGTCCGTAGCTACAATGTC+TGG | 0.558270 | 1_2:+78323812 | None:intergenic |
| AGAGGTAGTTGCCGCTGTGA+TGG | 0.562973 | 1_2:+78322452 | None:intergenic |
| CACACCAGACATTGTAGCTA+CGG | 0.572650 | 1_2:-78323816 | Msa0094890:CDS |
| TTGCATTGGGGTGCAACAAG+AGG | 0.590171 | 1_2:+78323903 | None:intergenic |
| GATAGGGATTTACCAGCATA+CGG | 0.594337 | 1_2:+78322414 | None:intergenic |
| TCTGACAAAACACAATGCAA+AGG | 0.615125 | 1_2:-78322393 | Msa0094890:CDS |
| AGTTGCCGCTGTGATGGCTG+AGG | 0.641938 | 1_2:+78322458 | None:intergenic |
| TGAGGATGAACATAATGAAG+AGG | 0.648497 | 1_2:+78323756 | None:intergenic |
| CCATGTGCATAGTTGCATTG+GGG | 0.656451 | 1_2:+78323891 | None:intergenic |
| CTATGCAAAAGATTCATGCA+AGG | 0.677580 | 1_2:-78323933 | Msa0094890:CDS |
| AGTTTGTGAATGCAGAACCA+GGG | 0.757579 | 1_2:-78322605 | Msa0094890:intron |
| AAATACCTCAGCCATCACAG+CGG | 0.800744 | 1_2:-78322463 | Msa0094890:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATTAATAAGTAATGTCT+CGG | - | chr1_2:78323094-78323113 | Msa0094890:intron | 15.0% |
| !! | AATAAGCTAAAAACAATTTA+TGG | + | chr1_2:78323444-78323463 | None:intergenic | 15.0% |
| !! | TTAATTAATAAGTAATGTCT+CGG | - | chr1_2:78323094-78323113 | Msa0094890:intron | 15.0% |
| !! | AATAAGCTAAAAACAATTTA+TGG | + | chr1_2:78323444-78323463 | None:intergenic | 15.0% |
| !! | TTCTTAGTATTAGAACAAAA+AGG | - | chr1_2:78322690-78322709 | Msa0094890:intron | 20.0% |
| !! | TCTTAGTATTAGAACAAAAA+GGG | - | chr1_2:78322691-78322710 | Msa0094890:intron | 20.0% |
| !!! | TTTATAGGTTTTATGTAATC+TGG | - | chr1_2:78322836-78322855 | Msa0094890:intron | 20.0% |
| !! | ACATAAACACTTATATGATA+TGG | - | chr1_2:78323558-78323577 | Msa0094890:intron | 20.0% |
| !! | TTCTTAGTATTAGAACAAAA+AGG | - | chr1_2:78322690-78322709 | Msa0094890:intron | 20.0% |
| !! | TCTTAGTATTAGAACAAAAA+GGG | - | chr1_2:78322691-78322710 | Msa0094890:intron | 20.0% |
| !!! | TTTATAGGTTTTATGTAATC+TGG | - | chr1_2:78322836-78322855 | Msa0094890:intron | 20.0% |
| !! | ACATAAACACTTATATGATA+TGG | - | chr1_2:78323558-78323577 | Msa0094890:intron | 20.0% |
| ! | AAACAACAAACACATAATGT+TGG | - | chr1_2:78323047-78323066 | Msa0094890:intron | 25.0% |
| ! | TAATTAAGCAACCTCATAAT+CGG | + | chr1_2:78323081-78323100 | None:intergenic | 25.0% |
| ! | ATAAATGGAAAAATGTGCAT+CGG | - | chr1_2:78323128-78323147 | Msa0094890:intron | 25.0% |
| ! | AGTAGAAAATTGTCAAATAG+CGG | + | chr1_2:78323334-78323353 | None:intergenic | 25.0% |
| !! | CAATTTTCTACTAAATATCG+TGG | - | chr1_2:78323342-78323361 | Msa0094890:intron | 25.0% |
| ! | AATAGAATATAGAACTGTGT+TGG | - | chr1_2:78323672-78323691 | Msa0094890:intron | 25.0% |
| ! | AAACAACAAACACATAATGT+TGG | - | chr1_2:78323047-78323066 | Msa0094890:intron | 25.0% |
| ! | TAATTAAGCAACCTCATAAT+CGG | + | chr1_2:78323081-78323100 | None:intergenic | 25.0% |
| ! | ATAAATGGAAAAATGTGCAT+CGG | - | chr1_2:78323128-78323147 | Msa0094890:intron | 25.0% |
| ! | AGTAGAAAATTGTCAAATAG+CGG | + | chr1_2:78323334-78323353 | None:intergenic | 25.0% |
| !! | CAATTTTCTACTAAATATCG+TGG | - | chr1_2:78323342-78323361 | Msa0094890:intron | 25.0% |
| ! | AATAGAATATAGAACTGTGT+TGG | - | chr1_2:78323672-78323691 | Msa0094890:intron | 25.0% |
| AAAATTCACAAACCCATATG+AGG | - | chr1_2:78322354-78322373 | Msa0094890:CDS | 30.0% | |
| ATGAACATTCTACAGAATCT+TGG | + | chr1_2:78322485-78322504 | None:intergenic | 30.0% | |
| AGAAGTTGAAGAAAAATACG+TGG | + | chr1_2:78322626-78322645 | None:intergenic | 30.0% | |
| !! | ACTACACTAACACTACTTTT+TGG | - | chr1_2:78322653-78322672 | Msa0094890:intron | 30.0% |
| ! | ACACTTTTGATCAAATGTGT+CGG | + | chr1_2:78322734-78322753 | None:intergenic | 30.0% |
| ! | GTTATTGTATGATCTAGTTC+TGG | - | chr1_2:78322956-78322975 | Msa0094890:intron | 30.0% |
| ! | GACTTCAGTTTATCTTTTGT+TGG | - | chr1_2:78323522-78323541 | Msa0094890:intron | 30.0% |
| AGCTTTCATGGAAATCATAT+TGG | + | chr1_2:78323641-78323660 | None:intergenic | 30.0% | |
| TGAATCACAAAAAGCTTTCA+TGG | + | chr1_2:78323653-78323672 | None:intergenic | 30.0% | |
| ACTACCTCTTTACATAAGAA+TGG | - | chr1_2:78323884-78323903 | Msa0094890:CDS | 30.0% | |
| AAAATTCACAAACCCATATG+AGG | - | chr1_2:78322354-78322373 | Msa0094890:CDS | 30.0% | |
| ATGAACATTCTACAGAATCT+TGG | + | chr1_2:78322485-78322504 | None:intergenic | 30.0% | |
| AGAAGTTGAAGAAAAATACG+TGG | + | chr1_2:78322626-78322645 | None:intergenic | 30.0% | |
| !! | ACTACACTAACACTACTTTT+TGG | - | chr1_2:78322653-78322672 | Msa0094890:intron | 30.0% |
| ! | ACACTTTTGATCAAATGTGT+CGG | + | chr1_2:78322734-78322753 | None:intergenic | 30.0% |
| ! | GTTATTGTATGATCTAGTTC+TGG | - | chr1_2:78322956-78322975 | Msa0094890:intron | 30.0% |
| ! | GACTTCAGTTTATCTTTTGT+TGG | - | chr1_2:78323522-78323541 | Msa0094890:intron | 30.0% |
| AGCTTTCATGGAAATCATAT+TGG | + | chr1_2:78323641-78323660 | None:intergenic | 30.0% | |
| TGAATCACAAAAAGCTTTCA+TGG | + | chr1_2:78323653-78323672 | None:intergenic | 30.0% | |
| ACTACCTCTTTACATAAGAA+TGG | - | chr1_2:78323884-78323903 | Msa0094890:CDS | 30.0% | |
| CTGAGTCTTAATCCTCATAT+GGG | + | chr1_2:78322369-78322388 | None:intergenic | 35.0% | |
| CTATGCAAAAGATTCATGCA+AGG | - | chr1_2:78322389-78322408 | Msa0094890:CDS | 35.0% | |
| TGAACATAATGAAGAGGTAG+AGG | + | chr1_2:78322563-78322582 | None:intergenic | 35.0% | |
| TGAGGATGAACATAATGAAG+AGG | + | chr1_2:78322569-78322588 | None:intergenic | 35.0% | |
| TGAAGAAAAATACGTGGTTG+TGG | + | chr1_2:78322620-78322639 | None:intergenic | 35.0% | |
| ! | TGTTTGTGTTGGTGCTTTAT+AGG | - | chr1_2:78322821-78322840 | Msa0094890:intron | 35.0% |
| ! | TCGGATTCGAGTCTTATAAA+TGG | - | chr1_2:78323113-78323132 | Msa0094890:intron | 35.0% |
| AAATAGACCCTAACTCATAG+GGG | + | chr1_2:78323164-78323183 | None:intergenic | 35.0% | |
| CAAATAGACCCTAACTCATA+GGG | + | chr1_2:78323165-78323184 | None:intergenic | 35.0% | |
| TCAAATAGACCCTAACTCAT+AGG | + | chr1_2:78323166-78323185 | None:intergenic | 35.0% | |
| ! | ATGCTCTCAATTTTGAATCG+CGG | - | chr1_2:78323262-78323281 | Msa0094890:intron | 35.0% |
| ! | CAATTTTGAATCGCGGAAAT+TGG | - | chr1_2:78323269-78323288 | Msa0094890:intron | 35.0% |
| GCTGTTTGTATAAGCTATCA+TGG | + | chr1_2:78323479-78323498 | None:intergenic | 35.0% | |
| ATTAAGCTGTTTACCCAAAC+AGG | - | chr1_2:78323601-78323620 | Msa0094890:intron | 35.0% | |
| ATCATATTGGACCTGGAATA+AGG | + | chr1_2:78323628-78323647 | None:intergenic | 35.0% | |
| TGATACAAAATGCAGAATGC+AGG | - | chr1_2:78323741-78323760 | Msa0094890:CDS | 35.0% | |
| ! | GCATTGTGTTTTGTCAGATA+GGG | + | chr1_2:78323927-78323946 | None:intergenic | 35.0% |
| ! | TGCATTGTGTTTTGTCAGAT+AGG | + | chr1_2:78323928-78323947 | None:intergenic | 35.0% |
| TCTGACAAAACACAATGCAA+AGG | - | chr1_2:78323929-78323948 | Msa0094890:CDS | 35.0% | |
| CTGACAAAACACAATGCAAA+GGG | - | chr1_2:78323930-78323949 | Msa0094890:CDS | 35.0% | |
| CTGAGTCTTAATCCTCATAT+GGG | + | chr1_2:78322369-78322388 | None:intergenic | 35.0% | |
| CTATGCAAAAGATTCATGCA+AGG | - | chr1_2:78322389-78322408 | Msa0094890:CDS | 35.0% | |
| TGAACATAATGAAGAGGTAG+AGG | + | chr1_2:78322563-78322582 | None:intergenic | 35.0% | |
| TGAGGATGAACATAATGAAG+AGG | + | chr1_2:78322569-78322588 | None:intergenic | 35.0% | |
| TGAAGAAAAATACGTGGTTG+TGG | + | chr1_2:78322620-78322639 | None:intergenic | 35.0% | |
| ! | TGTTTGTGTTGGTGCTTTAT+AGG | - | chr1_2:78322821-78322840 | Msa0094890:intron | 35.0% |
| ! | TCGGATTCGAGTCTTATAAA+TGG | - | chr1_2:78323113-78323132 | Msa0094890:intron | 35.0% |
| AAATAGACCCTAACTCATAG+GGG | + | chr1_2:78323164-78323183 | None:intergenic | 35.0% | |
| CAAATAGACCCTAACTCATA+GGG | + | chr1_2:78323165-78323184 | None:intergenic | 35.0% | |
| TCAAATAGACCCTAACTCAT+AGG | + | chr1_2:78323166-78323185 | None:intergenic | 35.0% | |
| ! | ATGCTCTCAATTTTGAATCG+CGG | - | chr1_2:78323262-78323281 | Msa0094890:intron | 35.0% |
| ! | CAATTTTGAATCGCGGAAAT+TGG | - | chr1_2:78323269-78323288 | Msa0094890:intron | 35.0% |
| GCTGTTTGTATAAGCTATCA+TGG | + | chr1_2:78323479-78323498 | None:intergenic | 35.0% | |
| ATTAAGCTGTTTACCCAAAC+AGG | - | chr1_2:78323601-78323620 | Msa0094890:intron | 35.0% | |
| ATCATATTGGACCTGGAATA+AGG | + | chr1_2:78323628-78323647 | None:intergenic | 35.0% | |
| TGATACAAAATGCAGAATGC+AGG | - | chr1_2:78323741-78323760 | Msa0094890:CDS | 35.0% | |
| ! | GCATTGTGTTTTGTCAGATA+GGG | + | chr1_2:78323927-78323946 | None:intergenic | 35.0% |
| ! | TGCATTGTGTTTTGTCAGAT+AGG | + | chr1_2:78323928-78323947 | None:intergenic | 35.0% |
| TCTGACAAAACACAATGCAA+AGG | - | chr1_2:78323929-78323948 | Msa0094890:CDS | 35.0% | |
| CTGACAAAACACAATGCAAA+GGG | - | chr1_2:78323930-78323949 | Msa0094890:CDS | 35.0% | |
| GCTGAGTCTTAATCCTCATA+TGG | + | chr1_2:78322370-78322389 | None:intergenic | 40.0% | |
| ACATAATGAAGAGGTAGAGG+AGG | + | chr1_2:78322560-78322579 | None:intergenic | 40.0% | |
| CACATTTGTCAGTGTTGTGT+TGG | + | chr1_2:78322774-78322793 | None:intergenic | 40.0% | |
| ! | TAAAGCACCAACACAAACAC+CGG | + | chr1_2:78322820-78322839 | None:intergenic | 40.0% |
| !! | CTGGCTTGCTTAATCAGTTA+TGG | - | chr1_2:78322975-78322994 | Msa0094890:intron | 40.0% |
| GCTTAATCAGTTATGGCATG+TGG | - | chr1_2:78322982-78323001 | Msa0094890:intron | 40.0% | |
| TGTGGTGAATTTAGCTAGGA+TGG | - | chr1_2:78323000-78323019 | Msa0094890:intron | 40.0% | |
| ! | ATGATTTGCCCCTATGAGTT+AGG | - | chr1_2:78323153-78323172 | Msa0094890:intron | 40.0% |
| ! | TGATTTGCCCCTATGAGTTA+GGG | - | chr1_2:78323154-78323173 | Msa0094890:intron | 40.0% |
| ! | TTTTGAATCGCGGAAATTGG+CGG | - | chr1_2:78323272-78323291 | Msa0094890:intron | 40.0% |
| CATGGAAATCATATTGGACC+TGG | + | chr1_2:78323635-78323654 | None:intergenic | 40.0% | |
| AGTTTGTGAATGCAGAACCA+GGG | - | chr1_2:78323717-78323736 | Msa0094890:intron | 40.0% | |
| ! | TCTGCATTTTGTATCATCCC+TGG | + | chr1_2:78323737-78323756 | None:intergenic | 40.0% |
| !!! | TGTTGTTTTGTGCAGAAGAG+TGG | + | chr1_2:78323802-78323821 | None:intergenic | 40.0% |
| CGGTCCATTCTTATGTAAAG+AGG | + | chr1_2:78323891-78323910 | None:intergenic | 40.0% | |
| GATAGGGATTTACCAGCATA+CGG | + | chr1_2:78323911-78323930 | None:intergenic | 40.0% | |
| TCATTCGTCTCTATGCTGAT+TGG | - | chr1_2:78323953-78323972 | Msa0094890:CDS | 40.0% | |
| GCTGAGTCTTAATCCTCATA+TGG | + | chr1_2:78322370-78322389 | None:intergenic | 40.0% | |
| ACATAATGAAGAGGTAGAGG+AGG | + | chr1_2:78322560-78322579 | None:intergenic | 40.0% | |
| CACATTTGTCAGTGTTGTGT+TGG | + | chr1_2:78322774-78322793 | None:intergenic | 40.0% | |
| ! | TAAAGCACCAACACAAACAC+CGG | + | chr1_2:78322820-78322839 | None:intergenic | 40.0% |
| !! | CTGGCTTGCTTAATCAGTTA+TGG | - | chr1_2:78322975-78322994 | Msa0094890:intron | 40.0% |
| GCTTAATCAGTTATGGCATG+TGG | - | chr1_2:78322982-78323001 | Msa0094890:intron | 40.0% | |
| TGTGGTGAATTTAGCTAGGA+TGG | - | chr1_2:78323000-78323019 | Msa0094890:intron | 40.0% | |
| ! | ATGATTTGCCCCTATGAGTT+AGG | - | chr1_2:78323153-78323172 | Msa0094890:intron | 40.0% |
| ! | TGATTTGCCCCTATGAGTTA+GGG | - | chr1_2:78323154-78323173 | Msa0094890:intron | 40.0% |
| ! | TTTTGAATCGCGGAAATTGG+CGG | - | chr1_2:78323272-78323291 | Msa0094890:intron | 40.0% |
| CATGGAAATCATATTGGACC+TGG | + | chr1_2:78323635-78323654 | None:intergenic | 40.0% | |
| AGTTTGTGAATGCAGAACCA+GGG | - | chr1_2:78323717-78323736 | Msa0094890:intron | 40.0% | |
| ! | TCTGCATTTTGTATCATCCC+TGG | + | chr1_2:78323737-78323756 | None:intergenic | 40.0% |
| !!! | TGTTGTTTTGTGCAGAAGAG+TGG | + | chr1_2:78323802-78323821 | None:intergenic | 40.0% |
| CGGTCCATTCTTATGTAAAG+AGG | + | chr1_2:78323891-78323910 | None:intergenic | 40.0% | |
| GATAGGGATTTACCAGCATA+CGG | + | chr1_2:78323911-78323930 | None:intergenic | 40.0% | |
| TCATTCGTCTCTATGCTGAT+TGG | - | chr1_2:78323953-78323972 | Msa0094890:CDS | 40.0% | |
| CCATGTGCATAGTTGCATTG+GGG | + | chr1_2:78322434-78322453 | None:intergenic | 45.0% | |
| GCCATGTGCATAGTTGCATT+GGG | + | chr1_2:78322435-78322454 | None:intergenic | 45.0% | |
| AGCCATGTGCATAGTTGCAT+TGG | + | chr1_2:78322436-78322455 | None:intergenic | 45.0% | |
| CACACCAGACATTGTAGCTA+CGG | - | chr1_2:78322506-78322525 | Msa0094890:CDS | 45.0% | |
| CATTCGATCAGTGTTGTGTC+CGG | - | chr1_2:78322798-78322817 | Msa0094890:intron | 45.0% | |
| GGCATGTGGTGAATTTAGCT+AGG | - | chr1_2:78322996-78323015 | Msa0094890:intron | 45.0% | |
| ! | TGGTTCTTCTGCCGATTATG+AGG | - | chr1_2:78323067-78323086 | Msa0094890:intron | 45.0% |
| GTTCGAATTCCACTACGCTA+TGG | - | chr1_2:78323376-78323395 | Msa0094890:intron | 45.0% | |
| ATAGTGTCACCATAGCGTAG+TGG | + | chr1_2:78323388-78323407 | None:intergenic | 45.0% | |
| CCTGGAATAAGGTCCTGTTT+GGG | + | chr1_2:78323617-78323636 | None:intergenic | 45.0% | |
| ACCTGGAATAAGGTCCTGTT+TGG | + | chr1_2:78323618-78323637 | None:intergenic | 45.0% | |
| GAGTTTGTGAATGCAGAACC+AGG | - | chr1_2:78323716-78323735 | Msa0094890:intron | 45.0% | |
| TCTGCTGCTGCTACAACTAA+TGG | - | chr1_2:78323776-78323795 | Msa0094890:CDS | 45.0% | |
| ! | ATGGCTGAGGTATTTGTAGC+AGG | + | chr1_2:78323854-78323873 | None:intergenic | 45.0% |
| AAATACCTCAGCCATCACAG+CGG | - | chr1_2:78323859-78323878 | Msa0094890:CDS | 45.0% | |
| CATAAGAATGGACCGTATGC+TGG | - | chr1_2:78323896-78323915 | Msa0094890:CDS | 45.0% | |
| CCATGTGCATAGTTGCATTG+GGG | + | chr1_2:78322434-78322453 | None:intergenic | 45.0% | |
| GCCATGTGCATAGTTGCATT+GGG | + | chr1_2:78322435-78322454 | None:intergenic | 45.0% | |
| AGCCATGTGCATAGTTGCAT+TGG | + | chr1_2:78322436-78322455 | None:intergenic | 45.0% | |
| CACACCAGACATTGTAGCTA+CGG | - | chr1_2:78322506-78322525 | Msa0094890:CDS | 45.0% | |
| CATTCGATCAGTGTTGTGTC+CGG | - | chr1_2:78322798-78322817 | Msa0094890:intron | 45.0% | |
| GGCATGTGGTGAATTTAGCT+AGG | - | chr1_2:78322996-78323015 | Msa0094890:intron | 45.0% | |
| ! | TGGTTCTTCTGCCGATTATG+AGG | - | chr1_2:78323067-78323086 | Msa0094890:intron | 45.0% |
| GTTCGAATTCCACTACGCTA+TGG | - | chr1_2:78323376-78323395 | Msa0094890:intron | 45.0% | |
| ATAGTGTCACCATAGCGTAG+TGG | + | chr1_2:78323388-78323407 | None:intergenic | 45.0% | |
| CCTGGAATAAGGTCCTGTTT+GGG | + | chr1_2:78323617-78323636 | None:intergenic | 45.0% | |
| ACCTGGAATAAGGTCCTGTT+TGG | + | chr1_2:78323618-78323637 | None:intergenic | 45.0% | |
| GAGTTTGTGAATGCAGAACC+AGG | - | chr1_2:78323716-78323735 | Msa0094890:intron | 45.0% | |
| TCTGCTGCTGCTACAACTAA+TGG | - | chr1_2:78323776-78323795 | Msa0094890:CDS | 45.0% | |
| ! | ATGGCTGAGGTATTTGTAGC+AGG | + | chr1_2:78323854-78323873 | None:intergenic | 45.0% |
| AAATACCTCAGCCATCACAG+CGG | - | chr1_2:78323859-78323878 | Msa0094890:CDS | 45.0% | |
| CATAAGAATGGACCGTATGC+TGG | - | chr1_2:78323896-78323915 | Msa0094890:CDS | 45.0% | |
| !!! | TTTTTGTTATTAAAATAAAA+TGG | - | chr1_2:78322886-78322905 | Msa0094890:intron | 5.0% |
| !!! | TTTTGTTATTAAAATAAAAT+GGG | - | chr1_2:78322887-78322906 | Msa0094890:intron | 5.0% |
| !!! | TTTTTGTTATTAAAATAAAA+TGG | - | chr1_2:78322886-78322905 | Msa0094890:intron | 5.0% |
| !!! | TTTTGTTATTAAAATAAAAT+GGG | - | chr1_2:78322887-78322906 | Msa0094890:intron | 5.0% |
| TTGCATTGGGGTGCAACAAG+AGG | + | chr1_2:78322422-78322441 | None:intergenic | 50.0% | |
| CCCCAATGCAACTATGCACA+TGG | - | chr1_2:78322431-78322450 | Msa0094890:CDS | 50.0% | |
| AACGACCTCAGAACAGCAAC+AGG | - | chr1_2:78322458-78322477 | Msa0094890:CDS | 50.0% | |
| ! | TTGGTCCTGTTGCTGTTCTG+AGG | + | chr1_2:78322466-78322485 | None:intergenic | 50.0% |
| GTGTCCGTAGCTACAATGTC+TGG | + | chr1_2:78322513-78322532 | None:intergenic | 50.0% | |
| GTAGAGGAGGAGTTGCATGA+AGG | + | chr1_2:78322547-78322566 | None:intergenic | 50.0% | |
| GTTGTGTCCGGTGTTTGTGT+TGG | - | chr1_2:78322810-78322829 | Msa0094890:intron | 50.0% | |
| TAGCGGCGCTGTAGCATTAT+AGG | + | chr1_2:78323317-78323336 | None:intergenic | 50.0% | |
| CCCAAACAGGACCTTATTCC+AGG | - | chr1_2:78323614-78323633 | Msa0094890:intron | 50.0% | |
| TTGCATTGGGGTGCAACAAG+AGG | + | chr1_2:78322422-78322441 | None:intergenic | 50.0% | |
| CCCCAATGCAACTATGCACA+TGG | - | chr1_2:78322431-78322450 | Msa0094890:CDS | 50.0% | |
| AACGACCTCAGAACAGCAAC+AGG | - | chr1_2:78322458-78322477 | Msa0094890:CDS | 50.0% | |
| ! | TTGGTCCTGTTGCTGTTCTG+AGG | + | chr1_2:78322466-78322485 | None:intergenic | 50.0% |
| GTGTCCGTAGCTACAATGTC+TGG | + | chr1_2:78322513-78322532 | None:intergenic | 50.0% | |
| GTAGAGGAGGAGTTGCATGA+AGG | + | chr1_2:78322547-78322566 | None:intergenic | 50.0% | |
| GTTGTGTCCGGTGTTTGTGT+TGG | - | chr1_2:78322810-78322829 | Msa0094890:intron | 50.0% | |
| TAGCGGCGCTGTAGCATTAT+AGG | + | chr1_2:78323317-78323336 | None:intergenic | 50.0% | |
| CCCAAACAGGACCTTATTCC+AGG | - | chr1_2:78323614-78323633 | Msa0094890:intron | 50.0% | |
| AGAGGTAGTTGCCGCTGTGA+TGG | + | chr1_2:78323873-78323892 | None:intergenic | 55.0% | |
| AGAGGTAGTTGCCGCTGTGA+TGG | + | chr1_2:78323873-78323892 | None:intergenic | 55.0% | |
| TCATGCTGCTGCTGCTGCTG+AGG | + | chr1_2:78322587-78322606 | None:intergenic | 60.0% | |
| AGTTGCCGCTGTGATGGCTG+AGG | + | chr1_2:78323867-78323886 | None:intergenic | 60.0% | |
| TCATGCTGCTGCTGCTGCTG+AGG | + | chr1_2:78322587-78322606 | None:intergenic | 60.0% | |
| AGTTGCCGCTGTGATGGCTG+AGG | + | chr1_2:78323867-78323886 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 78322338 | 78324006 | 78322338 | ID=Msa0094890;Name=Msa0094890 |
| chr1_2 | mRNA | 78322338 | 78324006 | 78322338 | ID=Msa0094890-mRNA-1;Parent=Msa0094890;Name=Msa0094890-mRNA-1;_AED=0.04;_eAED=0.12;_QI=0|0|0|1|1|1|2|0|187 |
| chr1_2 | exon | 78323718 | 78324006 | 78323718 | ID=Msa0094890-mRNA-1:exon:27936;Parent=Msa0094890-mRNA-1 |
| chr1_2 | exon | 78322338 | 78322612 | 78322338 | ID=Msa0094890-mRNA-1:exon:27935;Parent=Msa0094890-mRNA-1 |
| chr1_2 | CDS | 78323718 | 78324006 | 78323718 | ID=Msa0094890-mRNA-1:cds;Parent=Msa0094890-mRNA-1 |
| chr1_2 | CDS | 78322338 | 78322612 | 78322338 | ID=Msa0094890-mRNA-1:cds;Parent=Msa0094890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
