Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0095050 | XP_003597798.2 | 80.048 | 421 | 69 | 5 | 1 | 417 | 1 | 410 | 0.0 | 617 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0095050 | sp|Q5KQI4|Y5814_ORYSJ | 44.074 | 270 | 135 | 7 | 16 | 280 | 18 | 276 | 1.79e-57 | 192 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0095050 | G7IMD4 | 80.048 | 421 | 69 | 5 | 1 | 417 | 1 | 410 | 0.0 | 617 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0095050 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0095050 | MtrunA17_Chr2g0332121 | 80.048 | 421 | 69 | 5 | 1 | 417 | 1 | 410 | 0.0 | 617 |
| Msa0095050 | MtrunA17_Chr4g0002411 | 87.742 | 155 | 19 | 0 | 82 | 236 | 18 | 172 | 5.91e-84 | 254 |
| Msa0095050 | MtrunA17_Chr3g0133791 | 42.672 | 232 | 121 | 5 | 9 | 237 | 5 | 227 | 3.22e-46 | 159 |
| Msa0095050 | MtrunA17_Chr8g0375001 | 49.600 | 125 | 57 | 1 | 116 | 234 | 14 | 138 | 2.17e-33 | 123 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0095050 | AT5G58280.2 | 43.529 | 255 | 113 | 4 | 12 | 239 | 5 | 255 | 4.62e-57 | 190 |
| Msa0095050 | AT5G58280.3 | 44.141 | 256 | 109 | 5 | 12 | 239 | 5 | 254 | 2.74e-56 | 188 |
| Msa0095050 | AT5G58280.1 | 43.668 | 229 | 117 | 4 | 12 | 239 | 5 | 222 | 1.38e-50 | 172 |
| Msa0095050 | AT3G19184.1 | 40.079 | 252 | 125 | 3 | 12 | 255 | 8 | 241 | 6.51e-46 | 160 |
| Msa0095050 | AT3G19184.2 | 40.079 | 252 | 125 | 3 | 12 | 255 | 8 | 241 | 6.56e-46 | 160 |
| Msa0095050 | AT5G42700.1 | 39.130 | 230 | 119 | 5 | 10 | 234 | 7 | 220 | 1.02e-40 | 145 |
| Msa0095050 | AT5G42700.2 | 38.462 | 182 | 98 | 3 | 55 | 234 | 6 | 175 | 3.60e-32 | 120 |
Find 77 sgRNAs with CRISPR-Local
Find 266 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAACATTAGTCTTTGATTT+TGG | 0.195804 | 1_2:+78625558 | None:intergenic |
| ATACGAAGGAACTGGGTTTC+TGG | 0.220802 | 1_2:+78625509 | None:intergenic |
| GGTTGAAGCAGCAAGATTTA+AGG | 0.234558 | 1_2:-78624530 | Msa0095050:intron |
| TTCCTTTGATTTAACTGTTT+TGG | 0.239717 | 1_2:+78623143 | None:intergenic |
| TCGAGGTGTGCATCCTCTTT+TGG | 0.268589 | 1_2:+78623051 | None:intergenic |
| TCAAAGACTGCAAATTGATT+TGG | 0.272907 | 1_2:+78624914 | None:intergenic |
| TTTAGATTCTTTGATTGCTT+TGG | 0.273612 | 1_2:+78623242 | None:intergenic |
| TGCGATTTCAGTCAATGTTT+TGG | 0.279142 | 1_2:+78625702 | None:intergenic |
| TTGGACTTTGGCTCAAGTTT+AGG | 0.284818 | 1_2:+78623162 | None:intergenic |
| AGCCGCTTCATACTTGTTAC+TGG | 0.292196 | 1_2:+78626635 | None:intergenic |
| TTTACCTTGGATTTCTTTGC+TGG | 0.294171 | 1_2:+78625676 | None:intergenic |
| GAAGATTCTTGTTAAAATAA+TGG | 0.308039 | 1_2:-78622932 | Msa0095050:CDS |
| TTCCTAAATCATCTCTTAGA+AGG | 0.308163 | 1_2:+78622661 | None:intergenic |
| GAAGGTGATGTATGTGAAAT+TGG | 0.313037 | 1_2:-78622973 | Msa0095050:CDS |
| ATCAAAGACTAATGTTGTTC+TGG | 0.324841 | 1_2:-78625553 | Msa0095050:CDS |
| TTAAATCAAAGGAAGCTTAT+AGG | 0.330021 | 1_2:-78623134 | Msa0095050:CDS |
| TCCCTTCTAAGAGATGATTT+AGG | 0.349094 | 1_2:-78622663 | Msa0095050:three_prime_UTR |
| GGCAACTTTGTAGCTGCCTC+TGG | 0.368043 | 1_2:+78623018 | None:intergenic |
| AGCTGAAGAGATTAAACAAA+AGG | 0.375290 | 1_2:+78627029 | None:intergenic |
| CATGTTCTTTCTTCTTGCCT+AGG | 0.381909 | 1_2:+78622902 | None:intergenic |
| TCAGAAAGAGAGGTTAATCT+TGG | 0.396784 | 1_2:-78622780 | Msa0095050:exon |
| ATTTGCATTGAAACATAAAC+TGG | 0.400811 | 1_2:-78624581 | Msa0095050:CDS |
| CAAGAAGAAAGAACATGTTC+AGG | 0.404310 | 1_2:-78622896 | Msa0095050:CDS |
| GGTTGTTATGAAATACTGAT+TGG | 0.404992 | 1_2:-78622716 | Msa0095050:three_prime_UTR |
| TCTTCACGATACGAAGGAAC+TGG | 0.423062 | 1_2:+78625501 | None:intergenic |
| CACTTATCAAGTCAATGGTT+TGG | 0.424323 | 1_2:-78624885 | Msa0095050:CDS |
| TTCATACTTGTTACTGGAAG+TGG | 0.425368 | 1_2:+78626641 | None:intergenic |
| TCAAGAAAGAAAGCGTGCTT+TGG | 0.426683 | 1_2:-78624953 | Msa0095050:CDS |
| CCTCTGGTTTCACAGTTTCG+AGG | 0.431144 | 1_2:+78623034 | None:intergenic |
| TTTCTTTCTCTACTCAATCA+AGG | 0.439063 | 1_2:-78626992 | Msa0095050:intron |
| AAAAGAAGAAAGCGATGCTT+TGG | 0.444588 | 1_2:-78623289 | Msa0095050:CDS |
| ACCTTCCACAGTTGCGGAAG+AGG | 0.453437 | 1_2:-78625143 | Msa0095050:CDS |
| TCCATCACTTATCAAGTCAA+TGG | 0.461188 | 1_2:-78624890 | Msa0095050:CDS |
| GTTTGGTCTCACGTTTATAG+AGG | 0.467915 | 1_2:-78624868 | Msa0095050:CDS |
| CAAGGTCAAGTTCATCATCA+TGG | 0.471764 | 1_2:-78625119 | Msa0095050:CDS |
| ACCTCTTCCGCAACTGTGGA+AGG | 0.475917 | 1_2:+78625142 | None:intergenic |
| GGAAAACAAGAAGAGGTTTG+AGG | 0.478514 | 1_2:-78626595 | Msa0095050:intron |
| GCTGAAGAGATTAAACAAAA+GGG | 0.487935 | 1_2:+78627030 | None:intergenic |
| AAAGAAAACTAGAATGCAAA+AGG | 0.490045 | 1_2:-78623196 | Msa0095050:CDS |
| AGAAGAAAGCGATGCTTTGG+TGG | 0.493049 | 1_2:-78623286 | Msa0095050:CDS |
| ACCATTGACTTGATAAGTGA+TGG | 0.497922 | 1_2:+78624889 | None:intergenic |
| ATTTGAAAATATAGATGAAG+AGG | 0.499410 | 1_2:-78623316 | Msa0095050:CDS |
| CTAATGTTGTTCTGGAACCT+AGG | 0.501598 | 1_2:-78625545 | Msa0095050:CDS |
| AAGGTCAAGTTCATCATCAT+GGG | 0.503820 | 1_2:-78625118 | Msa0095050:CDS |
| TGTTCCTCGCAAAATCTCCT+TGG | 0.505957 | 1_2:+78624709 | None:intergenic |
| AGCAAGAAAACTGCGCTTAG+TGG | 0.510768 | 1_2:-78624616 | Msa0095050:CDS |
| AAACTGCGCTTAGTGGTGGC+TGG | 0.513224 | 1_2:-78624609 | Msa0095050:CDS |
| TAGAATTACGATGTTAGTTG+AGG | 0.529300 | 1_2:-78622580 | Msa0095050:three_prime_UTR |
| CACAGTTGCGGAAGAGGTCA+AGG | 0.544125 | 1_2:-78625137 | Msa0095050:CDS |
| AGCGATGCTTTGGTGGAAGA+AGG | 0.546631 | 1_2:-78623279 | Msa0095050:CDS |
| TACTGCAGTTGAGCCAAAAG+AGG | 0.549920 | 1_2:-78623064 | Msa0095050:CDS |
| GTCCAAAACAGTTAAATCAA+AGG | 0.550924 | 1_2:-78623145 | Msa0095050:CDS |
| AAAATAATGGAGGCTGACCT+AGG | 0.559343 | 1_2:-78622919 | Msa0095050:CDS |
| GCACAGACCTTCCACAGTTG+CGG | 0.564774 | 1_2:-78625149 | Msa0095050:CDS |
| GAGAGGTTAATCTTGGAGAC+CGG | 0.565166 | 1_2:-78622773 | Msa0095050:exon |
| GCGTGCTTTGGATGCTGCAG+AGG | 0.570639 | 1_2:-78624941 | Msa0095050:CDS |
| CTTGACCTCTTCCGCAACTG+TGG | 0.570829 | 1_2:+78625138 | None:intergenic |
| TCCTAAATCATCTCTTAGAA+GGG | 0.582142 | 1_2:+78622662 | None:intergenic |
| TTGAAACATAAACTGGATGA+TGG | 0.585314 | 1_2:-78624574 | Msa0095050:CDS |
| CTTCACGATACGAAGGAACT+GGG | 0.585948 | 1_2:+78625502 | None:intergenic |
| TCAGTTACGCTTACGTTGCG+AGG | 0.594424 | 1_2:-78625005 | Msa0095050:intron |
| GTGTGTAAGCAGATGGCAAA+CGG | 0.598841 | 1_2:-78626669 | Msa0095050:intron |
| GACTTGAGGAAAACAAGAAG+AGG | 0.599382 | 1_2:-78626602 | Msa0095050:CDS |
| CAAGTTCATCATCATGGGGA+AGG | 0.599718 | 1_2:-78625113 | Msa0095050:CDS |
| GTTCATCATCATGGGGAAGG+TGG | 0.600596 | 1_2:-78625110 | Msa0095050:intron |
| CTGGCACGAGAAGAGCGCCT+AGG | 0.600809 | 1_2:+78625528 | None:intergenic |
| AGTTCCTTCGTATCGTGAAG+AGG | 0.609998 | 1_2:-78625499 | Msa0095050:intron |
| AAGAAAACTGCGCTTAGTGG+TGG | 0.610549 | 1_2:-78624613 | Msa0095050:CDS |
| TTCCAGTAACAAGTATGAAG+CGG | 0.611515 | 1_2:-78626637 | Msa0095050:CDS |
| ATCTAAAACTGTGAAACCAA+AGG | 0.619114 | 1_2:-78623226 | Msa0095050:CDS |
| GATTCTTGTTAAAATAATGG+AGG | 0.623792 | 1_2:-78622929 | Msa0095050:CDS |
| AAGTCCAGCAAAGAAATCCA+AGG | 0.643226 | 1_2:-78625680 | Msa0095050:intron |
| AATTGGTGACTCACGTAATG+CGG | 0.648633 | 1_2:-78622956 | Msa0095050:CDS |
| GGCTAGAGAACAAAGACTTG+AGG | 0.682861 | 1_2:-78626616 | Msa0095050:CDS |
| CTTACCTCTTCACGATACGA+AGG | 0.683573 | 1_2:+78625495 | None:intergenic |
| AGGTCAAGTTCATCATCATG+GGG | 0.691621 | 1_2:-78625117 | Msa0095050:CDS |
| CCTCGAAACTGTGAAACCAG+AGG | 0.716116 | 1_2:-78623034 | Msa0095050:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATATTATCTTTATTTTGT+AGG | - | chr1_2:78624872-78624891 | Msa0095050:CDS | 10.0% |
| !!! | TATATTATCTTTATTTTGTA+GGG | - | chr1_2:78624873-78624892 | Msa0095050:CDS | 10.0% |
| !! | GATATTAAAATATTACAAAA+AGG | + | chr1_2:78625390-78625409 | None:intergenic | 10.0% |
| !! | GAAAAATATAAATTTATTGA+AGG | - | chr1_2:78625950-78625969 | Msa0095050:intron | 10.0% |
| !! | TCTTTAACAAAAAAAAAACA+GGG | + | chr1_2:78622710-78622729 | None:intergenic | 15.0% |
| !! | TTCTTTAACAAAAAAAAAAC+AGG | + | chr1_2:78622711-78622730 | None:intergenic | 15.0% |
| !!! | AAACTTGCAATTTTTTAAAT+CGG | - | chr1_2:78623953-78623972 | Msa0095050:intron | 15.0% |
| !!! | AAATTGAAATTTTATTGACA+TGG | - | chr1_2:78624570-78624589 | Msa0095050:CDS | 15.0% |
| !! | AATTTATTGAAGGTTAATTT+AGG | - | chr1_2:78625960-78625979 | Msa0095050:intron | 15.0% |
| !! | CATATGAATATAATTATGTT+AGG | + | chr1_2:78626220-78626239 | None:intergenic | 15.0% |
| !! | CTAACATAATTATATTCATA+TGG | - | chr1_2:78626218-78626237 | Msa0095050:intron | 15.0% |
| !!! | AAATATTGATATGCATTTTA+AGG | - | chr1_2:78626872-78626891 | Msa0095050:intron | 15.0% |
| !!! | TTTAAGCTTTTTCATTTCTT+GGG | + | chr1_2:78622759-78622778 | None:intergenic | 20.0% |
| !! | TTTCATGTTAATTGAAATCA+AGG | - | chr1_2:78623146-78623165 | Msa0095050:CDS | 20.0% |
| !!! | AAATCAAGGTATTTAAATAG+TGG | - | chr1_2:78623160-78623179 | Msa0095050:CDS | 20.0% |
| !! | TTGCTTTATACTTTATATCA+TGG | - | chr1_2:78623592-78623611 | Msa0095050:intron | 20.0% |
| !! | AAAATCATAAAAAACCTTTG+AGG | - | chr1_2:78623702-78623721 | Msa0095050:intron | 20.0% |
| !! | TATTTCACTTTATTACAGTT+AGG | - | chr1_2:78624438-78624457 | Msa0095050:intron | 20.0% |
| !!! | AAATTTTATTGACATGGTTA+TGG | - | chr1_2:78624576-78624595 | Msa0095050:CDS | 20.0% |
| !!! | AATTTTATTGACATGGTTAT+GGG | - | chr1_2:78624577-78624596 | Msa0095050:CDS | 20.0% |
| !! | TCCAAAAATTGACTATAAAA+TGG | - | chr1_2:78624926-78624945 | Msa0095050:CDS | 20.0% |
| !!! | ACCATTTTATAGTCAATTTT+TGG | + | chr1_2:78624930-78624949 | None:intergenic | 20.0% |
| !!! | ATTAGTTTGAGAAACTTAAA+TGG | + | chr1_2:78625863-78625882 | None:intergenic | 20.0% |
| !!! | ATAATTCTTTTTGTTTCTAC+TGG | + | chr1_2:78626166-78626185 | None:intergenic | 20.0% |
| !! | ATTTGAAAATATAGATGAAG+AGG | - | chr1_2:78626293-78626312 | Msa0095050:intron | 20.0% |
| !! | GAAGATTCTTGTTAAAATAA+TGG | - | chr1_2:78626677-78626696 | Msa0095050:intron | 20.0% |
| !!! | AAACTGTTTCTTTTACATAC+TGG | - | chr1_2:78622650-78622669 | Msa0095050:three_prime_UTR | 25.0% |
| !!! | AACTGTTTCTTTTACATACT+GGG | - | chr1_2:78622651-78622670 | Msa0095050:three_prime_UTR | 25.0% |
| !!! | CTTTAAGCTTTTTCATTTCT+TGG | + | chr1_2:78622760-78622779 | None:intergenic | 25.0% |
| ! | TAAGATTATCTCAAACAAAG+TGG | + | chr1_2:78623046-78623065 | None:intergenic | 25.0% |
| !!! | AAAGTTTTAAGCCATCATTA+AGG | + | chr1_2:78623091-78623110 | None:intergenic | 25.0% |
| ! | TATATATGCATGTGTATCTA+AGG | - | chr1_2:78623121-78623140 | Msa0095050:CDS | 25.0% |
| ! | AAAGAAATAGTTGTCAAATG+TGG | - | chr1_2:78623205-78623224 | Msa0095050:CDS | 25.0% |
| ! | TTTATACATACTACTCAATC+TGG | + | chr1_2:78623315-78623334 | None:intergenic | 25.0% |
| !!! | TAAGTCATGGTTTTAAATTG+TGG | - | chr1_2:78623405-78623424 | Msa0095050:intron | 25.0% |
| ! | TATATCATGGCTATAAATTG+TGG | - | chr1_2:78623605-78623624 | Msa0095050:intron | 25.0% |
| ! | AAAAAATTGCAAGTTTACCT+TGG | + | chr1_2:78623949-78623968 | None:intergenic | 25.0% |
| !!! | ACAACATTAGTCTTTGATTT+TGG | + | chr1_2:78624054-78624073 | None:intergenic | 25.0% |
| ! | ATAGTGCAAAAATATCTACT+AGG | - | chr1_2:78624235-78624254 | Msa0095050:intron | 25.0% |
| ! | AATATCTACTAGGAATATGT+TGG | - | chr1_2:78624245-78624264 | Msa0095050:intron | 25.0% |
| !! | ATTCTCATACTTTTGTCTTA+GGG | + | chr1_2:78624284-78624303 | None:intergenic | 25.0% |
| !! | AATTCTCATACTTTTGTCTT+AGG | + | chr1_2:78624285-78624304 | None:intergenic | 25.0% |
| ! | ATCTTCAAATTCAACAATCA+AGG | + | chr1_2:78624364-78624383 | None:intergenic | 25.0% |
| ! | ACATTAAAGAATGAACAACA+AGG | + | chr1_2:78624807-78624826 | None:intergenic | 25.0% |
| !!! | TGACTATAAAATGGTTTTAG+AGG | - | chr1_2:78624935-78624954 | Msa0095050:CDS | 25.0% |
| ! | ATTTGCATTGAAACATAAAC+TGG | - | chr1_2:78625028-78625047 | Msa0095050:intron | 25.0% |
| !! | TTTTCCTCAAAAACAAATCA+TGG | + | chr1_2:78625265-78625284 | None:intergenic | 25.0% |
| !!! | ATGATTTGTTTTTGAGGAAA+AGG | - | chr1_2:78625264-78625283 | Msa0095050:intron | 25.0% |
| ! | GGAAAAGGAATAATTTCAAA+TGG | - | chr1_2:78625279-78625298 | Msa0095050:intron | 25.0% |
| ! | AAGAAGAAACTCAATATCAA+AGG | + | chr1_2:78625352-78625371 | None:intergenic | 25.0% |
| ! | TGACCAAATTAATTCTTACA+AGG | - | chr1_2:78625438-78625457 | Msa0095050:intron | 25.0% |
| !! | AAGCCTTGTAAGAATTAATT+TGG | + | chr1_2:78625444-78625463 | None:intergenic | 25.0% |
| !! | CAATTACTATATTTGGAACT+TGG | + | chr1_2:78625519-78625538 | None:intergenic | 25.0% |
| ! | CAGCTAACAATTACTATATT+TGG | + | chr1_2:78625526-78625545 | None:intergenic | 25.0% |
| ! | TATCTTCAAAAGTTATCTCA+TGG | + | chr1_2:78625567-78625586 | None:intergenic | 25.0% |
| !! | ACCAGTTTAGAATTTGAAAA+GGG | + | chr1_2:78625611-78625630 | None:intergenic | 25.0% |
| !! | TACCAGTTTAGAATTTGAAA+AGG | + | chr1_2:78625612-78625631 | None:intergenic | 25.0% |
| !! | CCTACTTATAACAACTATTT+TGG | + | chr1_2:78625755-78625774 | None:intergenic | 25.0% |
| ! | CCAAAATAGTTGTTATAAGT+AGG | - | chr1_2:78625752-78625771 | Msa0095050:intron | 25.0% |
| !!! | TACTTTTAGGGTTGAAATTA+CGG | - | chr1_2:78625811-78625830 | Msa0095050:intron | 25.0% |
| ! | AACAAAAAGAATTATATGCC+AGG | - | chr1_2:78626171-78626190 | Msa0095050:intron | 25.0% |
| ! | TTTAGATTCTTTGATTGCTT+TGG | + | chr1_2:78626370-78626389 | None:intergenic | 25.0% |
| ! | AAAGAAAACTAGAATGCAAA+AGG | - | chr1_2:78626413-78626432 | Msa0095050:intron | 25.0% |
| !!! | TTCCTTTGATTTAACTGTTT+TGG | + | chr1_2:78626469-78626488 | None:intergenic | 25.0% |
| ! | TTAAATCAAAGGAAGCTTAT+AGG | - | chr1_2:78626475-78626494 | Msa0095050:intron | 25.0% |
| ! | GATTCTTGTTAAAATAATGG+AGG | - | chr1_2:78626680-78626699 | Msa0095050:intron | 25.0% |
| !! | ATATTTCGCAATCTTTTAAC+CGG | + | chr1_2:78626858-78626877 | None:intergenic | 25.0% |
| !!! | TTTTGATAATTGTTGCAGAA+TGG | - | chr1_2:78626986-78627005 | Msa0095050:intron | 25.0% |
| GCTGAAGAGATTAAACAAAA+GGG | + | chr1_2:78622582-78622601 | None:intergenic | 30.0% | |
| AGCTGAAGAGATTAAACAAA+AGG | + | chr1_2:78622583-78622602 | None:intergenic | 30.0% | |
| TTTCTTTCTCTACTCAATCA+AGG | - | chr1_2:78622617-78622636 | Msa0095050:three_prime_UTR | 30.0% | |
| !! | ACTGTTTCTTTTACATACTG+GGG | - | chr1_2:78622652-78622671 | Msa0095050:three_prime_UTR | 30.0% |
| ! | TTTTATGGAAAAAGAGTGAG+TGG | - | chr1_2:78622836-78622855 | Msa0095050:CDS | 30.0% |
| TTTATGGAAAAAGAGTGAGT+GGG | - | chr1_2:78622837-78622856 | Msa0095050:CDS | 30.0% | |
| TCATTTGTGTACCTTAATGA+TGG | - | chr1_2:78623077-78623096 | Msa0095050:CDS | 30.0% | |
| AGAAACATCAAAAACCTTGA+TGG | - | chr1_2:78623253-78623272 | Msa0095050:CDS | 30.0% | |
| ! | TTTTAAATTGTGGTCGAGTT+GGG | - | chr1_2:78623415-78623434 | Msa0095050:intron | 30.0% |
| CTATATGTACTGCTCAATAT+AGG | + | chr1_2:78623520-78623539 | None:intergenic | 30.0% | |
| TTAAGCGATCTTTGATATCA+TGG | - | chr1_2:78623631-78623650 | Msa0095050:intron | 30.0% | |
| ! | GGATAATAGTTGTGATAATG+AGG | - | chr1_2:78623739-78623758 | Msa0095050:intron | 30.0% |
| ! | GGTAGTTTGCATAAATCTAT+AGG | + | chr1_2:78623771-78623790 | None:intergenic | 30.0% |
| TAAATCCTTGAGAACAAAAG+GGG | + | chr1_2:78623871-78623890 | None:intergenic | 30.0% | |
| CTAAATCCTTGAGAACAAAA+GGG | + | chr1_2:78623872-78623891 | None:intergenic | 30.0% | |
| !! | TAAATCGGTTTTACTCTGTA+AGG | - | chr1_2:78623968-78623987 | Msa0095050:intron | 30.0% |
| ATCAAAGACTAATGTTGTTC+TGG | - | chr1_2:78624056-78624075 | Msa0095050:intron | 30.0% | |
| GATATAGTTTGAACTTTGCA+AGG | + | chr1_2:78624148-78624167 | None:intergenic | 30.0% | |
| ACTATCATGTTGGAAAAGAA+TGG | + | chr1_2:78624390-78624409 | None:intergenic | 30.0% | |
| !!! | GCTTTTTTGATTTCATTCAG+TGG | + | chr1_2:78624630-78624649 | None:intergenic | 30.0% |
| TCAAAGACTGCAAATTGATT+TGG | + | chr1_2:78624698-78624717 | None:intergenic | 30.0% | |
| !!! | AATGGTTTTAGAGGATGAAA+AGG | - | chr1_2:78624944-78624963 | Msa0095050:CDS | 30.0% |
| !!! | ATGGTTTTAGAGGATGAAAA+GGG | - | chr1_2:78624945-78624964 | Msa0095050:CDS | 30.0% |
| TTGAAACATAAACTGGATGA+TGG | - | chr1_2:78625035-78625054 | Msa0095050:intron | 30.0% | |
| ! | TGATGCAGTAGTTTTTGAAT+TGG | - | chr1_2:78625058-78625077 | Msa0095050:intron | 30.0% |
| !! | CTTTGAAGTTAAAAGAGAGT+TGG | + | chr1_2:78625128-78625147 | None:intergenic | 30.0% |
| !!! | CAACTCTCTTTTAACTTCAA+AGG | - | chr1_2:78625126-78625145 | Msa0095050:CDS | 30.0% |
| GATAATAACTGATATCAGCT+TGG | - | chr1_2:78625187-78625206 | Msa0095050:intron | 30.0% | |
| !!! | TTGTCCATGATTTGTTTTTG+AGG | - | chr1_2:78625258-78625277 | Msa0095050:intron | 30.0% |
| AGAACATCTAAGTTCATTAG+TGG | + | chr1_2:78625309-78625328 | None:intergenic | 30.0% | |
| TATAGTAATTGTTAGCTGTG+AGG | - | chr1_2:78625528-78625547 | Msa0095050:CDS | 30.0% | |
| ATAGTAATTGTTAGCTGTGA+GGG | - | chr1_2:78625529-78625548 | Msa0095050:CDS | 30.0% | |
| !! | ACTTTTGAAGATAGCTTTTG+TGG | - | chr1_2:78625574-78625593 | Msa0095050:CDS | 30.0% |
| !! | CTTTTGAAGATAGCTTTTGT+GGG | - | chr1_2:78625575-78625594 | Msa0095050:CDS | 30.0% |
| ! | ACCCTTTTCAAATTCTAAAC+TGG | - | chr1_2:78625607-78625626 | Msa0095050:intron | 30.0% |
| GACATATCACTAGTAAATGT+GGG | + | chr1_2:78625733-78625752 | None:intergenic | 30.0% | |
| !!! | AGCTTTTGGAGTTTACTTTT+AGG | - | chr1_2:78625798-78625817 | Msa0095050:intron | 30.0% |
| !!! | GCTTTTGGAGTTTACTTTTA+GGG | - | chr1_2:78625799-78625818 | Msa0095050:intron | 30.0% |
| ! | GGAAACTTGTTCTATAAGAA+AGG | - | chr1_2:78625921-78625940 | Msa0095050:intron | 30.0% |
| TTTGCAACCAAAAAACAAGT+GGG | + | chr1_2:78626089-78626108 | None:intergenic | 30.0% | |
| ATTTGCAACCAAAAAACAAG+TGG | + | chr1_2:78626090-78626109 | None:intergenic | 30.0% | |
| AAAAAGAATTATATGCCAGG+TGG | - | chr1_2:78626174-78626193 | Msa0095050:intron | 30.0% | |
| ! | ATCTAAAACTGTGAAACCAA+AGG | - | chr1_2:78626383-78626402 | Msa0095050:intron | 30.0% |
| !! | GATTTAACTGTTTTGGACTT+TGG | + | chr1_2:78626462-78626481 | None:intergenic | 30.0% |
| GTCCAAAACAGTTAAATCAA+AGG | - | chr1_2:78626464-78626483 | Msa0095050:intron | 30.0% | |
| ! | TTTGCCTTCTTTTTCTTGTT+TGG | + | chr1_2:78626615-78626634 | None:intergenic | 30.0% |
| AAGAAAAAGAAGGCAAAAGA+AGG | - | chr1_2:78626618-78626637 | Msa0095050:CDS | 30.0% | |
| GGTTGTTATGAAATACTGAT+TGG | - | chr1_2:78626893-78626912 | Msa0095050:intron | 30.0% | |
| TCCTAAATCATCTCTTAGAA+GGG | + | chr1_2:78626950-78626969 | None:intergenic | 30.0% | |
| TTCCTAAATCATCTCTTAGA+AGG | + | chr1_2:78626951-78626970 | None:intergenic | 30.0% | |
| TAGAATTACGATGTTAGTTG+AGG | - | chr1_2:78627029-78627048 | Msa0095050:five_prime_UTR | 30.0% | |
| AATCATTGTGTGTAAGCAGA+TGG | - | chr1_2:78622933-78622952 | Msa0095050:CDS | 35.0% | |
| ! | TTCATACTTGTTACTGGAAG+TGG | + | chr1_2:78622971-78622990 | None:intergenic | 35.0% |
| TTCCAGTAACAAGTATGAAG+CGG | - | chr1_2:78622972-78622991 | Msa0095050:CDS | 35.0% | |
| ! | ATAACCCGCAACAACATTTT+AGG | + | chr1_2:78623284-78623303 | None:intergenic | 35.0% |
| AGAATTCAAAACTTCCGTGT+TGG | - | chr1_2:78623380-78623399 | Msa0095050:intron | 35.0% | |
| AACCATGACTTAAACCAACA+CGG | + | chr1_2:78623397-78623416 | None:intergenic | 35.0% | |
| !! | GTTTTAAATTGTGGTCGAGT+TGG | - | chr1_2:78623414-78623433 | Msa0095050:intron | 35.0% |
| CAACTATGTTGGCAATATCA+AGG | + | chr1_2:78623443-78623462 | None:intergenic | 35.0% | |
| TCACAACTATTATCCACATG+TGG | + | chr1_2:78623734-78623753 | None:intergenic | 35.0% | |
| ! | AATATCCCCTTTTGTTCTCA+AGG | - | chr1_2:78623863-78623882 | Msa0095050:intron | 35.0% |
| CCTAAATCCTTGAGAACAAA+AGG | + | chr1_2:78623873-78623892 | None:intergenic | 35.0% | |
| ! | CCTTTTGTTCTCAAGGATTT+AGG | - | chr1_2:78623870-78623889 | Msa0095050:intron | 35.0% |
| ! | TGCGATTTCAGTCAATGTTT+TGG | + | chr1_2:78623910-78623929 | None:intergenic | 35.0% |
| TTTACCTTGGATTTCTTTGC+TGG | + | chr1_2:78623936-78623955 | None:intergenic | 35.0% | |
| CGATTCTGCACAAAGAAATA+GGG | + | chr1_2:78624021-78624040 | None:intergenic | 35.0% | |
| ACGATTCTGCACAAAGAAAT+AGG | + | chr1_2:78624022-78624041 | None:intergenic | 35.0% | |
| CTCAAGAAAGAGGAATATGT+TGG | - | chr1_2:78624204-78624223 | Msa0095050:intron | 35.0% | |
| TCTACTAGGAATATGTTGGT+TGG | - | chr1_2:78624249-78624268 | Msa0095050:intron | 35.0% | |
| !!! | ATTTAGCTCTAGAGTTTTGC+AGG | - | chr1_2:78624302-78624321 | Msa0095050:intron | 35.0% |
| AGAGAAAAATCACACAACAC+TGG | + | chr1_2:78624328-78624347 | None:intergenic | 35.0% | |
| AACAATCAAGGATTTCTCGA+AGG | + | chr1_2:78624352-78624371 | None:intergenic | 35.0% | |
| !! | TTCCAACATGATAGTTTTGC+AGG | - | chr1_2:78624395-78624414 | Msa0095050:intron | 35.0% |
| TTCCTGCAAAACTATCATGT+TGG | + | chr1_2:78624400-78624419 | None:intergenic | 35.0% | |
| AAGGTCAAGTTCATCATCAT+GGG | - | chr1_2:78624491-78624510 | Msa0095050:intron | 35.0% | |
| TCCATCACTTATCAAGTCAA+TGG | - | chr1_2:78624719-78624738 | Msa0095050:intron | 35.0% | |
| !! | ACCATTGACTTGATAAGTGA+TGG | + | chr1_2:78624723-78624742 | None:intergenic | 35.0% |
| CACTTATCAAGTCAATGGTT+TGG | - | chr1_2:78624724-78624743 | Msa0095050:intron | 35.0% | |
| ! | CTCACGTTTATAGAGGTTTT+TGG | - | chr1_2:78624748-78624767 | Msa0095050:intron | 35.0% |
| !!! | CGTTTATAGAGGTTTTTGGT+TGG | - | chr1_2:78624752-78624771 | Msa0095050:intron | 35.0% |
| !!! | TATAGAGGTTTTTGGTTGGT+AGG | - | chr1_2:78624756-78624775 | Msa0095050:intron | 35.0% |
| !! | TTATTTTGTAGGGTCTTCCA+AGG | - | chr1_2:78624883-78624902 | Msa0095050:CDS | 35.0% |
| AAAGAGAGTTGGATGAGAAT+TGG | + | chr1_2:78625117-78625136 | None:intergenic | 35.0% | |
| TGAGTTTCTTCTTGAGTTCA+AGG | - | chr1_2:78625359-78625378 | Msa0095050:intron | 35.0% | |
| TAGTAATTGTTAGCTGTGAG+GGG | - | chr1_2:78625530-78625549 | Msa0095050:CDS | 35.0% | |
| GGACATATCACTAGTAAATG+TGG | + | chr1_2:78625734-78625753 | None:intergenic | 35.0% | |
| TATAGAACAAGTTTCCCTGA+GGG | + | chr1_2:78625917-78625936 | None:intergenic | 35.0% | |
| TTATAGAACAAGTTTCCCTG+AGG | + | chr1_2:78625918-78625937 | None:intergenic | 35.0% | |
| AAAAGAAGAAAGCGATGCTT+TGG | - | chr1_2:78626320-78626339 | Msa0095050:intron | 35.0% | |
| ! | GTTTTCTTTGTAGCTTCCTT+TGG | + | chr1_2:78626402-78626421 | None:intergenic | 35.0% |
| GTTGCCAAACAAGAAAAAGA+AGG | - | chr1_2:78626608-78626627 | Msa0095050:CDS | 35.0% | |
| GAAGGTGATGTATGTGAAAT+TGG | - | chr1_2:78626636-78626655 | Msa0095050:CDS | 35.0% | |
| CAAGAAGAAAGAACATGTTC+AGG | - | chr1_2:78626713-78626732 | Msa0095050:intron | 35.0% | |
| ! | CCTCTCTTTCTGAAAAACTT+CGG | + | chr1_2:78626822-78626841 | None:intergenic | 35.0% |
| TCAGAAAGAGAGGTTAATCT+TGG | - | chr1_2:78626829-78626848 | Msa0095050:intron | 35.0% | |
| ! | TCCCTTCTAAGAGATGATTT+AGG | - | chr1_2:78626946-78626965 | Msa0095050:intron | 35.0% |
| ! | CATACTGGGGTTACTTGTTA+TGG | - | chr1_2:78622665-78622684 | Msa0095050:three_prime_UTR | 40.0% |
| GACTTGAGGAAAACAAGAAG+AGG | - | chr1_2:78623007-78623026 | Msa0095050:CDS | 40.0% | |
| GGAAAACAAGAAGAGGTTTG+AGG | - | chr1_2:78623014-78623033 | Msa0095050:CDS | 40.0% | |
| ! | GTTGTCAAATGTGGTTGATG+TGG | - | chr1_2:78623214-78623233 | Msa0095050:CDS | 40.0% |
| !! | CATCAAAAACCTTGATGGTG+TGG | - | chr1_2:78623258-78623277 | Msa0095050:CDS | 40.0% |
| TGTGGCCTAAAATGTTGTTG+CGG | - | chr1_2:78623276-78623295 | Msa0095050:CDS | 40.0% | |
| !! | TTCCGTGTTGGTTTAAGTCA+TGG | - | chr1_2:78623392-78623411 | Msa0095050:intron | 40.0% |
| GCCAACATAGTTGTCAACTT+TGG | - | chr1_2:78623450-78623469 | Msa0095050:intron | 40.0% | |
| GCCAAAGTTGACAACTATGT+TGG | + | chr1_2:78623454-78623473 | None:intergenic | 40.0% | |
| AAAGACTACGTTAGTGGTGA+GGG | + | chr1_2:78623799-78623818 | None:intergenic | 40.0% | |
| AGACACAAAGACTACGTTAG+TGG | + | chr1_2:78623805-78623824 | None:intergenic | 40.0% | |
| AAGTCCAGCAAAGAAATCCA+AGG | - | chr1_2:78623929-78623948 | Msa0095050:intron | 40.0% | |
| !! | CTAATGTTGTTCTGGAACCT+AGG | - | chr1_2:78624064-78624083 | Msa0095050:intron | 40.0% |
| CAAGGTCAAGTTCATCATCA+TGG | - | chr1_2:78624490-78624509 | Msa0095050:intron | 40.0% | |
| AGGTCAAGTTCATCATCATG+GGG | - | chr1_2:78624492-78624511 | Msa0095050:intron | 40.0% | |
| ! | TCAAGAAAGAAAGCGTGCTT+TGG | - | chr1_2:78624656-78624675 | Msa0095050:CDS | 40.0% |
| GTTTGGTCTCACGTTTATAG+AGG | - | chr1_2:78624741-78624760 | Msa0095050:intron | 40.0% | |
| ! | TAAGCGCAGTTTTCTTGCTA+AGG | + | chr1_2:78624992-78625011 | None:intergenic | 40.0% |
| GGTTGAAGCAGCAAGATTTA+AGG | - | chr1_2:78625079-78625098 | Msa0095050:intron | 40.0% | |
| ! | TCTATCACTATCGACTGATC+GGG | + | chr1_2:78625164-78625183 | None:intergenic | 40.0% |
| ! | GTCTATCACTATCGACTGAT+CGG | + | chr1_2:78625165-78625184 | None:intergenic | 40.0% |
| ATCAGTCGATAGTGATAGAC+AGG | - | chr1_2:78625165-78625184 | Msa0095050:intron | 40.0% | |
| ! | TATCAGCTTGGTGAGAATGT+TGG | - | chr1_2:78625199-78625218 | Msa0095050:intron | 40.0% |
| ! | TTGGTGAGAATGTTGGTTGA+TGG | - | chr1_2:78625206-78625225 | Msa0095050:intron | 40.0% |
| !!! | CTAGCTTTTGAGGTTGAGTT+AGG | - | chr1_2:78625493-78625512 | Msa0095050:intron | 40.0% |
| ! | TATTTTCCAAATTGCCCCTC+AGG | - | chr1_2:78625899-78625918 | Msa0095050:intron | 40.0% |
| ! | ATTTTCCAAATTGCCCCTCA+GGG | - | chr1_2:78625900-78625919 | Msa0095050:intron | 40.0% |
| ATAGAACAAGTTTCCCTGAG+GGG | + | chr1_2:78625916-78625935 | None:intergenic | 40.0% | |
| !! | GCAATGTTCTCTAAAACTGC+AGG | - | chr1_2:78626058-78626077 | Msa0095050:intron | 40.0% |
| AACCAAAAAACAAGTGGGTC+TGG | + | chr1_2:78626084-78626103 | None:intergenic | 40.0% | |
| ATATCATCATTCGATCCACC+TGG | + | chr1_2:78626192-78626211 | None:intergenic | 40.0% | |
| ! | TTGGACTTTGGCTCAAGTTT+AGG | + | chr1_2:78626450-78626469 | None:intergenic | 40.0% |
| ! | AATTGGTGACTCACGTAATG+CGG | - | chr1_2:78626653-78626672 | Msa0095050:CDS | 40.0% |
| ! | AAAATAATGGAGGCTGACCT+AGG | - | chr1_2:78626690-78626709 | Msa0095050:intron | 40.0% |
| CATGTTCTTTCTTCTTGCCT+AGG | + | chr1_2:78626710-78626729 | None:intergenic | 40.0% | |
| !! | CCGAAGTTTTTCAGAAAGAG+AGG | - | chr1_2:78626819-78626838 | Msa0095050:intron | 40.0% |
| GTGTGTAAGCAGATGGCAAA+CGG | - | chr1_2:78622940-78622959 | Msa0095050:CDS | 45.0% | |
| ! | AGCCGCTTCATACTTGTTAC+TGG | + | chr1_2:78622977-78622996 | None:intergenic | 45.0% |
| GGCTAGAGAACAAAGACTTG+AGG | - | chr1_2:78622993-78623012 | Msa0095050:CDS | 45.0% | |
| ! | GGTTGATGTGGAATCAATCG+TGG | - | chr1_2:78623226-78623245 | Msa0095050:CDS | 45.0% |
| ! | CATTTTAGGCCACACCATCA+AGG | + | chr1_2:78623270-78623289 | None:intergenic | 45.0% |
| GTGGCCTAAAATGTTGTTGC+GGG | - | chr1_2:78623277-78623296 | Msa0095050:CDS | 45.0% | |
| !! | GTTGTCAACTTTGGCTTTCG+TGG | - | chr1_2:78623459-78623478 | Msa0095050:intron | 45.0% |
| !! | TCAACTTTGGCTTTCGTGGT+CGG | - | chr1_2:78623463-78623482 | Msa0095050:intron | 45.0% |
| CAAAGACTACGTTAGTGGTG+AGG | + | chr1_2:78623800-78623819 | None:intergenic | 45.0% | |
| ATACGAAGGAACTGGGTTTC+TGG | + | chr1_2:78624103-78624122 | None:intergenic | 45.0% | |
| CTTCACGATACGAAGGAACT+GGG | + | chr1_2:78624110-78624129 | None:intergenic | 45.0% | |
| TCTTCACGATACGAAGGAAC+TGG | + | chr1_2:78624111-78624130 | None:intergenic | 45.0% | |
| AGTTCCTTCGTATCGTGAAG+AGG | - | chr1_2:78624110-78624129 | Msa0095050:intron | 45.0% | |
| CTTACCTCTTCACGATACGA+AGG | + | chr1_2:78624117-78624136 | None:intergenic | 45.0% | |
| TCGTATCGTGAAGAGGTAAG+CGG | - | chr1_2:78624117-78624136 | Msa0095050:intron | 45.0% | |
| GTGACTCTGACTCAAGAAAG+AGG | - | chr1_2:78624194-78624213 | Msa0095050:intron | 45.0% | |
| CAAGTTCATCATCATGGGGA+AGG | - | chr1_2:78624496-78624515 | Msa0095050:intron | 45.0% | |
| ! | TCTTCCAAGGAGATTTTGCG+AGG | - | chr1_2:78624896-78624915 | Msa0095050:CDS | 45.0% |
| TGTTCCTCGCAAAATCTCCT+TGG | + | chr1_2:78624903-78624922 | None:intergenic | 45.0% | |
| AGCAAGAAAACTGCGCTTAG+TGG | - | chr1_2:78624993-78625012 | Msa0095050:CDS | 45.0% | |
| AAGAAAACTGCGCTTAGTGG+TGG | - | chr1_2:78624996-78625015 | Msa0095050:CDS | 45.0% | |
| GGTCATATCTCTAGCTGATG+TGG | + | chr1_2:78625423-78625442 | None:intergenic | 45.0% | |
| TCAACCTCAAAAGCTAGCAG+AGG | + | chr1_2:78625490-78625509 | None:intergenic | 45.0% | |
| TCACACTCAAGACGAAGGTT+GGG | + | chr1_2:78625693-78625712 | None:intergenic | 45.0% | |
| TTCACACTCAAGACGAAGGT+TGG | + | chr1_2:78625694-78625713 | None:intergenic | 45.0% | |
| ACCTTCGTCTTGAGTGTGAA+AGG | - | chr1_2:78625694-78625713 | Msa0095050:CDS | 45.0% | |
| !!! | TCTTCGTGTGAGCTAGCTTT+TGG | - | chr1_2:78625784-78625803 | Msa0095050:intron | 45.0% |
| TCCTGACAATTCATTCGTGC+AGG | - | chr1_2:78626254-78626273 | Msa0095050:intron | 45.0% | |
| ACCTGCACGAATGAATTGTC+AGG | + | chr1_2:78626258-78626277 | None:intergenic | 45.0% | |
| AGAAGAAAGCGATGCTTTGG+TGG | - | chr1_2:78626323-78626342 | Msa0095050:intron | 45.0% | |
| TACTGCAGTTGAGCCAAAAG+AGG | - | chr1_2:78626545-78626564 | Msa0095050:intron | 45.0% | |
| AACCTGCTGCAGAAAAACCT+CGG | - | chr1_2:78626784-78626803 | Msa0095050:intron | 45.0% | |
| GAGAGGTTAATCTTGGAGAC+CGG | - | chr1_2:78626836-78626855 | Msa0095050:intron | 45.0% | |
| !!! | TTAAAACTTTTTAAATTTTA+TGG | - | chr1_2:78622821-78622840 | Msa0095050:CDS | 5.0% |
| ACATGTGGCTGCAACCTCAA+AGG | + | chr1_2:78623719-78623738 | None:intergenic | 50.0% | |
| ! | TTTGAGGTTGCAGCCACATG+TGG | - | chr1_2:78623718-78623737 | Msa0095050:intron | 50.0% |
| GTTCATCATCATGGGGAAGG+TGG | - | chr1_2:78624499-78624518 | Msa0095050:intron | 50.0% | |
| TCAGTTACGCTTACGTTGCG+AGG | - | chr1_2:78624604-78624623 | Msa0095050:CDS | 50.0% | |
| AGCAGAGGAGACAAGAGGTA+AGG | + | chr1_2:78625475-78625494 | None:intergenic | 50.0% | |
| AAGCTAGCAGAGGAGACAAG+AGG | + | chr1_2:78625480-78625499 | None:intergenic | 50.0% | |
| !!! | GTCTCCTCTGCTAGCTTTTG+AGG | - | chr1_2:78625483-78625502 | Msa0095050:intron | 50.0% |
| TTTGCAGGTGGCGTGATAAG+TGG | + | chr1_2:78625667-78625686 | None:intergenic | 50.0% | |
| ACTTATCACGCCACCTGCAA+AGG | - | chr1_2:78625666-78625685 | Msa0095050:intron | 50.0% | |
| CACACTCAAGACGAAGGTTG+GGG | + | chr1_2:78625692-78625711 | None:intergenic | 50.0% | |
| GCCTTTCACACTCAAGACGA+AGG | + | chr1_2:78625698-78625717 | None:intergenic | 50.0% | |
| AGTTTCCCTGAGGGGCAATT+TGG | + | chr1_2:78625908-78625927 | None:intergenic | 50.0% | |
| !!! | GGCCAGACCCACTTGTTTTT+TGG | - | chr1_2:78626079-78626098 | Msa0095050:intron | 50.0% |
| AGCGATGCTTTGGTGGAAGA+AGG | - | chr1_2:78626330-78626349 | Msa0095050:intron | 50.0% | |
| ! | TCGAGGTGTGCATCCTCTTT+TGG | + | chr1_2:78626561-78626580 | None:intergenic | 50.0% |
| ! | CCTCTGGTTTCACAGTTTCG+AGG | + | chr1_2:78626578-78626597 | None:intergenic | 50.0% |
| CCTCGAAACTGTGAAACCAG+AGG | - | chr1_2:78626575-78626594 | Msa0095050:intron | 50.0% | |
| ! | TTCCGAGGTTTTTCTGCAGC+AGG | + | chr1_2:78626789-78626808 | None:intergenic | 50.0% |
| !!! | TTCGGAGCTCGTTTTTTCCG+AGG | + | chr1_2:78626804-78626823 | None:intergenic | 50.0% |
| ACGTTAGTGGTGAGGGACAC+AGG | + | chr1_2:78623792-78623811 | None:intergenic | 55.0% | |
| GCACAGACCTTCCACAGTTG+CGG | - | chr1_2:78624460-78624479 | Msa0095050:intron | 55.0% | |
| ACCTTCCACAGTTGCGGAAG+AGG | - | chr1_2:78624466-78624485 | Msa0095050:intron | 55.0% | |
| ACCTCTTCCGCAACTGTGGA+AGG | + | chr1_2:78624470-78624489 | None:intergenic | 55.0% | |
| CTTGACCTCTTCCGCAACTG+TGG | + | chr1_2:78624474-78624493 | None:intergenic | 55.0% | |
| CACAGTTGCGGAAGAGGTCA+AGG | - | chr1_2:78624472-78624491 | Msa0095050:intron | 55.0% | |
| AAACTGCGCTTAGTGGTGGC+TGG | - | chr1_2:78625000-78625019 | Msa0095050:CDS | 55.0% | |
| GGCAACTTTGTAGCTGCCTC+TGG | + | chr1_2:78626594-78626613 | None:intergenic | 55.0% | |
| ! | GCGTGCTTTGGATGCTGCAG+AGG | - | chr1_2:78624668-78624687 | Msa0095050:CDS | 60.0% |
| GCAGGTGGCGTGATAAGTGG+TGG | + | chr1_2:78625664-78625683 | None:intergenic | 60.0% | |
| AAGGTTGGGGCCTTTGCAGG+TGG | + | chr1_2:78625679-78625698 | None:intergenic | 60.0% | |
| ACGAAGGTTGGGGCCTTTGC+AGG | + | chr1_2:78625682-78625701 | None:intergenic | 60.0% | |
| !! | CTGGCACGAGAAGAGCGCCT+AGG | + | chr1_2:78624084-78624103 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 78622566 | 78627065 | 78622566 | ID=Msa0095050;Name=Msa0095050 |
| chr1_2 | mRNA | 78622566 | 78627065 | 78622566 | ID=Msa0095050-mRNA-1;Parent=Msa0095050;Name=Msa0095050-mRNA-1;_AED=0.09;_eAED=0.09;_QI=73|0.85|0.87|1|0.85|0.87|8|220|417 |
| chr1_2 | exon | 78622566 | 78623355 | 78622566 | ID=Msa0095050-mRNA-1:exon:28027;Parent=Msa0095050-mRNA-1 |
| chr1_2 | exon | 78624531 | 78624737 | 78624531 | ID=Msa0095050-mRNA-1:exon:28026;Parent=Msa0095050-mRNA-1 |
| chr1_2 | exon | 78624858 | 78625023 | 78624858 | ID=Msa0095050-mRNA-1:exon:28025;Parent=Msa0095050-mRNA-1 |
| chr1_2 | exon | 78625111 | 78625175 | 78625111 | ID=Msa0095050-mRNA-1:exon:28024;Parent=Msa0095050-mRNA-1 |
| chr1_2 | exon | 78625500 | 78625595 | 78625500 | ID=Msa0095050-mRNA-1:exon:28023;Parent=Msa0095050-mRNA-1 |
| chr1_2 | exon | 78625681 | 78625746 | 78625681 | ID=Msa0095050-mRNA-1:exon:28022;Parent=Msa0095050-mRNA-1 |
| chr1_2 | exon | 78626596 | 78626679 | 78626596 | ID=Msa0095050-mRNA-1:exon:28021;Parent=Msa0095050-mRNA-1 |
| chr1_2 | exon | 78626993 | 78627065 | 78626993 | ID=Msa0095050-mRNA-1:exon:28020;Parent=Msa0095050-mRNA-1 |
| chr1_2 | five_prime_UTR | 78626993 | 78627065 | 78626993 | ID=Msa0095050-mRNA-1:five_prime_utr;Parent=Msa0095050-mRNA-1 |
| chr1_2 | CDS | 78626596 | 78626679 | 78626596 | ID=Msa0095050-mRNA-1:cds;Parent=Msa0095050-mRNA-1 |
| chr1_2 | CDS | 78625681 | 78625746 | 78625681 | ID=Msa0095050-mRNA-1:cds;Parent=Msa0095050-mRNA-1 |
| chr1_2 | CDS | 78625500 | 78625595 | 78625500 | ID=Msa0095050-mRNA-1:cds;Parent=Msa0095050-mRNA-1 |
| chr1_2 | CDS | 78625111 | 78625175 | 78625111 | ID=Msa0095050-mRNA-1:cds;Parent=Msa0095050-mRNA-1 |
| chr1_2 | CDS | 78624858 | 78625023 | 78624858 | ID=Msa0095050-mRNA-1:cds;Parent=Msa0095050-mRNA-1 |
| chr1_2 | CDS | 78624531 | 78624737 | 78624531 | ID=Msa0095050-mRNA-1:cds;Parent=Msa0095050-mRNA-1 |
| chr1_2 | CDS | 78622786 | 78623355 | 78622786 | ID=Msa0095050-mRNA-1:cds;Parent=Msa0095050-mRNA-1 |
| chr1_2 | three_prime_UTR | 78622566 | 78622785 | 78622566 | ID=Msa0095050-mRNA-1:three_prime_utr;Parent=Msa0095050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
