AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0095870

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0095870 MtrunA17_Chr1g0185121 95.291 446 15 2 1 440 1 446 0.0 878
Msa0095870 MtrunA17_Chr8g0342421 56.497 354 102 9 6 327 18 351 8.39e-116 348
Msa0095870 MtrunA17_Chr2g0330171 53.665 382 133 11 6 363 1 362 1.22e-115 347
Msa0095870 MtrunA17_Chr1g0191991 60.458 306 87 5 40 328 63 351 1.08e-114 346
Msa0095870 MtrunA17_Chr1g0181381 83.516 182 26 1 36 217 34 211 1.25e-113 342
Msa0095870 MtrunA17_Chr1g0151351 56.856 299 94 6 35 333 37 300 2.02e-112 338
Msa0095870 MtrunA17_Chr1g0162971 49.614 389 126 9 40 379 41 408 4.87e-110 332
Msa0095870 MtrunA17_Chr7g0263941 58.044 317 102 8 17 327 11 302 8.19e-110 330
Msa0095870 MtrunA17_Chr4g0040571 83.146 178 29 1 29 206 28 204 4.44e-109 331
Msa0095870 MtrunA17_Chr8g0373541 75.862 203 42 3 6 208 4 199 5.10e-109 331
Msa0095870 MtrunA17_Chr4g0029521 55.769 312 118 7 36 327 34 345 4.20e-108 328
Msa0095870 MtrunA17_Chr2g0326381 75.956 183 44 0 40 222 32 214 8.25e-106 320
Msa0095870 MtrunA17_Chr3g0141431 48.267 404 162 12 33 401 15 406 3.32e-105 318
Msa0095870 MtrunA17_Chr1g0199101 64.751 261 70 8 40 295 47 290 4.33e-105 322
Msa0095870 MtrunA17_Chr1g0163001 69.027 226 56 4 4 224 2 218 2.04e-103 317
Msa0095870 MtrunA17_Chr1g0210821 59.533 257 87 5 43 283 47 302 4.98e-102 315
Msa0095870 MtrunA17_Chr7g0268961 56.209 306 87 6 50 328 32 317 1.08e-100 309
Msa0095870 MtrunA17_Chr2g0324991 85.606 132 18 1 51 182 3 133 8.43e-83 251
Msa0095870 MtrunA17_Chr8g0375521 49.798 247 111 5 40 279 27 267 1.46e-75 242
Msa0095870 MtrunA17_Chr6g0479921 63.694 157 55 2 40 195 29 184 1.97e-71 233
Msa0095870 MtrunA17_Chr2g0320341 36.774 155 85 3 49 190 224 378 6.74e-26 108
Msa0095870 MtrunA17_Chr1g0200421 36.184 152 84 4 54 193 236 386 1.20e-23 103
Msa0095870 MtrunA17_Chr3g0123941 36.538 156 92 3 45 193 113 268 3.84e-23 99.8
Msa0095870 MtrunA17_Chr5g0422571 31.731 208 129 6 14 211 60 264 9.82e-22 95.1
Msa0095870 MtrunA17_Chr7g0258011 34.810 158 84 6 61 201 181 336 1.96e-20 92.0
Msa0095870 MtrunA17_Chr8g0382121 35.135 148 86 4 53 190 109 256 2.76e-20 91.3
Msa0095870 MtrunA17_Chr4g0053341 30.846 201 124 7 2 193 24 218 3.25e-20 89.4
Msa0095870 MtrunA17_Chr1g0198651 35.172 145 80 5 61 193 107 249 3.71e-20 90.5
Msa0095870 MtrunA17_Chr8g0352011 36.620 142 79 5 61 193 171 310 5.69e-20 90.5
Msa0095870 MtrunA17_Chr1g0173841 35.915 142 80 5 61 193 220 359 3.82e-19 89.0
Msa0095870 MtrunA17_Chr4g0026521 34.694 147 85 5 56 193 118 262 4.14e-19 87.4
Msa0095870 MtrunA17_Chr2g0328921 33.523 176 97 7 27 193 118 282 8.12e-19 87.0
Msa0095870 MtrunA17_Chr2g0321291 35.374 147 84 5 56 193 133 277 1.78e-18 85.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0095870 AT4G02670.1 51.128 399 117 10 23 404 36 373 1.18e-121 360
Msa0095870 AT4G02670.2 51.128 399 117 10 23 404 38 375 1.37e-121 360
Msa0095870 AT3G50700.1 50.119 421 167 10 2 386 1 414 2.74e-113 340
Msa0095870 AT1G55110.3 73.059 219 51 4 6 216 21 239 6.82e-111 334
Msa0095870 AT1G55110.1 73.059 219 51 4 6 216 21 239 6.82e-111 334
Msa0095870 AT1G55110.2 73.059 219 51 4 6 216 21 239 6.82e-111 334
Msa0095870 AT5G03150.1 81.868 182 30 1 39 217 52 233 3.97e-108 329
Msa0095870 AT5G66730.1 49.246 398 126 8 2 332 1 389 2.09e-107 327
Msa0095870 AT3G45260.2 83.735 166 27 0 39 204 38 203 1.90e-106 323
Msa0095870 AT3G45260.1 83.735 166 27 0 39 204 38 203 1.90e-106 323
Msa0095870 AT1G03840.1 82.759 174 29 1 33 206 34 206 5.16e-106 323
Msa0095870 AT3G13810.6 85.629 167 24 0 37 203 48 214 5.59e-106 323
Msa0095870 AT3G13810.4 85.629 167 24 0 37 203 67 233 6.33e-106 323
Msa0095870 AT3G13810.1 85.629 167 24 0 37 203 67 233 6.33e-106 323
Msa0095870 AT3G13810.5 85.629 167 24 0 37 203 62 228 6.86e-106 323
Msa0095870 AT5G44160.1 54.706 340 111 12 19 325 20 349 7.02e-104 317
Msa0095870 AT1G14580.1 79.429 175 30 2 34 203 42 215 3.21e-103 315
Msa0095870 AT1G14580.2 79.429 175 30 2 34 203 42 215 3.21e-103 315
Msa0095870 AT5G60470.2 73.438 192 42 2 40 222 44 235 4.93e-103 314
Msa0095870 AT1G14580.3 79.429 175 30 2 34 203 56 229 5.41e-103 315
Msa0095870 AT5G60470.3 73.438 192 42 2 40 222 40 231 5.79e-103 314
Msa0095870 AT2G02080.1 78.161 174 33 2 34 203 44 216 2.51e-102 314
Msa0095870 AT2G02080.4 78.161 174 33 2 34 203 44 216 2.51e-102 314
Msa0095870 AT2G02080.5 78.161 174 33 2 34 203 44 216 2.51e-102 314
Msa0095870 AT2G02080.3 78.161 174 33 2 34 203 44 216 2.51e-102 314
Msa0095870 AT1G03840.2 81.609 174 29 2 33 206 34 204 3.74e-102 313
Msa0095870 AT2G02070.2 84.146 164 25 1 40 203 52 214 3.34e-101 314
Msa0095870 AT2G02070.1 84.146 164 25 1 40 203 52 214 3.34e-101 314
Msa0095870 AT3G13810.3 87.582 153 19 0 51 203 68 220 1.30e-98 304
Msa0095870 AT3G13810.2 87.582 153 19 0 51 203 82 234 1.68e-98 304
Msa0095870 AT5G60470.1 72.376 181 41 2 51 222 46 226 3.89e-95 294
Msa0095870 AT5G44160.2 54.693 309 101 11 50 325 8 310 5.08e-95 293
Msa0095870 AT2G02080.6 80.714 140 26 1 64 203 1 139 2.72e-86 271
Msa0095870 AT2G02080.2 80.714 140 26 1 64 203 1 139 2.72e-86 271
Msa0095870 AT2G01940.1 62.573 171 59 2 27 196 35 201 3.54e-75 242
Msa0095870 AT1G68130.1 64.103 156 55 1 40 194 41 196 6.02e-73 235
Msa0095870 AT1G25250.3 63.694 157 55 2 40 194 33 189 4.39e-72 232
Msa0095870 AT2G01940.3 61.628 172 60 3 27 196 35 202 1.51e-71 233
Msa0095870 AT1G25250.1 64.626 147 50 2 50 194 20 166 1.32e-68 222
Msa0095870 AT2G01940.2 62.500 112 41 1 86 196 1 112 7.72e-46 162
Msa0095870 AT1G68130.2 61.818 110 41 1 86 194 1 110 2.65e-45 160
Msa0095870 AT1G25250.2 60.360 111 42 2 86 194 1 111 1.22e-43 155
Msa0095870 AT5G22890.1 34.911 169 95 4 38 193 188 354 6.05e-24 103
Msa0095870 AT1G34370.3 35.443 158 89 4 49 193 14 171 1.43e-23 100
Msa0095870 AT1G34370.2 35.443 158 89 4 49 193 224 381 3.64e-23 102
Msa0095870 AT1G34370.1 35.443 158 89 4 49 193 224 381 3.64e-23 102
Msa0095870 AT1G13290.1 33.987 153 88 6 61 202 93 243 1.12e-19 89.7
Msa0095870 AT1G34790.1 36.000 150 85 5 53 193 129 276 5.04e-19 87.8
Msa0095870 AT1G08290.1 35.260 173 91 8 40 193 142 312 6.62e-19 87.8
Msa0095870 AT3G20880.1 35.211 142 81 5 61 193 248 387 1.00e-18 88.2
Msa0095870 AT3G57670.1 34.694 147 85 5 56 193 204 348 1.52e-18 87.4
Msa0095870 AT1G51220.1 33.333 147 87 5 56 193 165 309 3.44e-18 85.9

Find 135 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCGACGGTTGCTGCTTTC+TGG 0.054131 1_3:+1248878 None:intergenic
AAATATACCCATGGTAATTT+TGG 0.155636 1_3:+1248504 None:intergenic
GAGAGGTTGGTGTGAAAATT+TGG 0.168178 1_3:+1249033 None:intergenic
AAAATTACCATGGGTATATT+TGG 0.189707 1_3:-1248502 Msa0095870:three_prime_UTR
ATTAGTGCAGGGAACATATT+TGG 0.233636 1_3:+1252299 None:intergenic
GATGATGTCATTATGCTCTT+AGG 0.239488 1_3:+1248976 None:intergenic
TGATGTGGCTTTGTTGGTTT+TGG 0.242334 1_3:+1249133 None:intergenic
AGGCTGTTGTGAGGAATTTA+TGG 0.247540 1_3:+1252208 None:intergenic
GTGTGAAAATTTGGAGATTC+AGG 0.253132 1_3:+1249042 None:intergenic
TGGAAACTTTGTTGTTGATT+TGG 0.272173 1_3:+1249153 None:intergenic
AGGAAGAGAGATTGGACTAA+TGG 0.292623 1_3:+1249180 None:intergenic
GTGTATCCAAGTCTCATTCT+TGG 0.308012 1_3:-1252483 Msa0095870:five_prime_UTR
GGAAACTTTGTTGTTGATTT+GGG 0.314994 1_3:+1249154 None:intergenic
TTGTGGTGGTGATGGCTAAT+TGG 0.316995 1_3:+1249211 None:intergenic
TTCTGAGAAAGAAGTGGAAT+TGG 0.320642 1_3:+1252274 None:intergenic
CCCAGGTGATGTGGCTTTGT+TGG 0.325238 1_3:+1249127 None:intergenic
TTGGGAAGAGGAAGAGAGAT+TGG 0.331874 1_3:+1249172 None:intergenic
CAGCTCAGCATTGACCAGTT+TGG 0.334289 1_3:-1248820 Msa0095870:CDS
GAGACCGTCTTCGTTCTTTC+CGG 0.338812 1_3:+1248738 None:intergenic
GACTAATGGGTTTGTGTTTG+TGG 0.349306 1_3:+1249194 None:intergenic
CAGTCACAACAAGCAGGTTT+TGG 0.351112 1_3:-1248577 Msa0095870:CDS
ATAGTTAATGAAATTGAAAC+AGG 0.351681 1_3:+1248385 None:intergenic
TGTGGTGGAGAGTATTATTA+AGG 0.363128 1_3:+1249073 None:intergenic
AGGGCTCTTGGAGATCTTAC+AGG 0.369272 1_3:-1251602 Msa0095870:CDS
CTAGGGTTAGGGTTTGGTTG+AGG 0.381467 1_3:+1249099 None:intergenic
GGAAGAGAGATTGGACTAAT+GGG 0.383729 1_3:+1249181 None:intergenic
ATGATGTCATTATGCTCTTA+GGG 0.385655 1_3:+1248977 None:intergenic
TTATTAAGGTTGCTAGGGTT+AGG 0.389295 1_3:+1249087 None:intergenic
CTTACCAACGGCGGAGGAAA+TGG 0.400342 1_3:-1248697 Msa0095870:CDS
TTCCTTTGCTTTAACTTCCA+TGG 0.408186 1_3:+1251695 None:intergenic
TCTATGCTGTTCATTCTGAT+TGG 0.408547 1_3:-1251514 Msa0095870:CDS
TATTAGTTACCTGGGTTACC+AGG 0.411020 1_3:+1252158 None:intergenic
TTTGATGAGGTTGGTGTTGG+TGG 0.413230 1_3:+1248620 None:intergenic
ACCAACAAAGCCACATCACC+TGG 0.418644 1_3:-1249128 Msa0095870:CDS
GGGTTAGGGTTTGGTTGAGG+TGG 0.424046 1_3:+1249102 None:intergenic
TATTAAGGTTGCTAGGGTTA+GGG 0.426783 1_3:+1249088 None:intergenic
CATAACCCTTCAAGGGCTCT+TGG 0.427551 1_3:-1251614 Msa0095870:CDS
CATTTCCTCCGCCGTTGGTA+AGG 0.428942 1_3:+1248698 None:intergenic
GGTTAGGGTTTGGTTGAGGT+GGG 0.430124 1_3:+1249103 None:intergenic
AAAGCTATCACTTCAGCATC+AGG 0.433390 1_3:+1251824 None:intergenic
GGTCTCACGAGGGACTTTCT+TGG 0.435384 1_3:-1248721 Msa0095870:CDS
TAGAGGAGGAGAAGAGAGGT+TGG 0.446268 1_3:+1249020 None:intergenic
AGAGTATTATTAAGGTTGCT+AGG 0.450934 1_3:+1249081 None:intergenic
TTTGTTGTTGATTTGGGAAG+AGG 0.451023 1_3:+1249160 None:intergenic
GTTTGGTTGAGGTGGGTCCC+AGG 0.454878 1_3:+1249110 None:intergenic
GTTTGTGTTTGTGGTGGTGA+TGG 0.463157 1_3:+1249203 None:intergenic
AGGTTGCTAGGGTTAGGGTT+TGG 0.463790 1_3:+1249093 None:intergenic
GGGTTTGTGTGACGAAGAAA+TGG 0.465238 1_3:+1248997 None:intergenic
GTGTTCATCATAACCCTTCA+AGG 0.465914 1_3:-1251622 Msa0095870:CDS
TTTGCTTTAACTTCCATGGT+AGG 0.481290 1_3:+1251699 None:intergenic
GCTGAGTCACTGATCCAAAC+TGG 0.482248 1_3:+1248806 None:intergenic
AAGGATATGCTAACATTCAC+AGG 0.488242 1_3:-1248655 Msa0095870:CDS
GAGATTCAGGCTTGATGTTG+TGG 0.492741 1_3:+1249055 None:intergenic
AGGAAATGGTGGTGAGTCCT+TGG 0.504475 1_3:-1248683 Msa0095870:CDS
GGTATATAAGATGAATTGAA+TGG 0.505833 1_3:+1248479 None:intergenic
TTTATATTCTCTAGTACCAC+AGG 0.507908 1_3:+1251475 None:intergenic
AAACAGTACTCCATGACAAA+AGG 0.510212 1_3:+1248458 None:intergenic
GAGTATTATTAAGGTTGCTA+GGG 0.512977 1_3:+1249082 None:intergenic
TGTTTCTTCTGAGAAAGAAG+TGG 0.516927 1_3:+1252268 None:intergenic
GTGGAATTGGACATTAGTGC+AGG 0.522525 1_3:+1252287 None:intergenic
GTGATGTTGGCTGCCTGTGA+TGG 0.522742 1_3:+1248849 None:intergenic
AACATGAGAGGCTGCCTCAC+CGG 0.528047 1_3:-1248757 Msa0095870:CDS
GTGTGTGAGATCTGCAACAA+GGG 0.528425 1_3:-1251767 Msa0095870:CDS
TGATGAACACATGAAGGCTC+TGG 0.528458 1_3:+1251635 None:intergenic
GAGGTGGGTCCCAGGTGATG+TGG 0.529471 1_3:+1249118 None:intergenic
GTCGGTGCCACCGCCATCAC+AGG 0.531410 1_3:-1248862 Msa0095870:CDS
CTTGGCCTTACCAACGGCGG+AGG 0.533245 1_3:-1248703 Msa0095870:CDS
AACAACTGTTCCTGAGTCGT+GGG 0.538679 1_3:-1248542 Msa0095870:CDS
AATTTATGGTTGAAACTAAG+TGG 0.539157 1_3:+1252222 None:intergenic
ACCACCATTTCCTCCGCCGT+TGG 0.540479 1_3:+1248693 None:intergenic
GTCCTCTCCTATGTAGCTGT+AGG 0.540553 1_3:+1251726 None:intergenic
TGAGAGCCAAGAATGAGACT+TGG 0.541869 1_3:+1252477 None:intergenic
ATGGTAGAGGAGGAGAAGAG+AGG 0.543866 1_3:+1249016 None:intergenic
TGACGAAGAAATGGTAGAGG+AGG 0.549887 1_3:+1249006 None:intergenic
GACTTTCTTGGCCTTACCAA+CGG 0.550956 1_3:-1248709 Msa0095870:CDS
CAACAACTGTTCCTGAGTCG+TGG 0.554359 1_3:-1248543 Msa0095870:CDS
ATCAAAACCTACAGCTACAT+AGG 0.556033 1_3:-1251733 Msa0095870:CDS
AGATCTCCAAGAGCCCTTGA+AGG 0.557730 1_3:+1251608 None:intergenic
TGAGCTGAGAGGTGTGATGT+TGG 0.562319 1_3:+1248836 None:intergenic
TGCTGTGTGCTGACGTGGAA+GGG 0.562720 1_3:+1248952 None:intergenic
TTGGCTGCCTGTGATGGCGG+TGG 0.566128 1_3:+1248855 None:intergenic
TAATGGGTTTGTGTTTGTGG+TGG 0.568535 1_3:+1249197 None:intergenic
TAGCATATCCTTTACATCCA+AGG 0.571843 1_3:+1248666 None:intergenic
ATACCTTCTTGTCATGGACA+TGG 0.573008 1_3:-1248325 Msa0095870:three_prime_UTR
AGAAGCCTCCCTGGTAACCC+AGG 0.574987 1_3:-1252167 Msa0095870:intron
AAGGTTGCTGTGTGCTGACG+TGG 0.575946 1_3:+1248947 None:intergenic
TGTGATGGCGGTGGCACCGA+CGG 0.576064 1_3:+1248864 None:intergenic
AGAGAATATAAATGTGATTG+TGG 0.579986 1_3:-1251464 Msa0095870:CDS
TGCTGAAAGGTGTGGTGACA+TGG 0.583375 1_3:+1248912 None:intergenic
AGAACGAAGACGGTCTCACG+AGG 0.584329 1_3:-1248732 Msa0095870:CDS
GTGTGGTGACATGGCAGCAG+TGG 0.584847 1_3:+1248921 None:intergenic
TTGCTGTGTGCTGACGTGGA+AGG 0.586433 1_3:+1248951 None:intergenic
TGGTGAGTCCTTGGATGTAA+AGG 0.590221 1_3:-1248674 Msa0095870:CDS
GTTGTTAATGTAGTGATCAA+CGG 0.595265 1_3:+1248777 None:intergenic
GGGTTATGATGAACACATGA+AGG 0.597360 1_3:+1251629 None:intergenic
GATCTCCAAGAGCCCTTGAA+GGG 0.598968 1_3:+1251609 None:intergenic
ACTCCATGTCCATGACAAGA+AGG 0.599738 1_3:+1248322 None:intergenic
GTGTGACGAAGAAATGGTAG+AGG 0.601234 1_3:+1249003 None:intergenic
TACCATGGAAGTTAAAGCAA+AGG 0.607475 1_3:-1251697 Msa0095870:CDS
GACATGGCAGCAGTGGAAGA+AGG 0.611386 1_3:+1248928 None:intergenic
AAGTCACAGTCACAACAAGC+AGG 0.612011 1_3:-1248583 Msa0095870:CDS
ATTAGTTACCTGGGTTACCA+GGG 0.616252 1_3:+1252159 None:intergenic
GGAGAGGACATAACCTACCA+TGG 0.621627 1_3:-1251712 Msa0095870:CDS
CGTCTTCGTTCTTTCCGGTG+AGG 0.625760 1_3:+1248743 None:intergenic
TGTTCATCATAACCCTTCAA+GGG 0.626799 1_3:-1251621 Msa0095870:CDS
ATGTTGGCTGCCTGTGATGG+CGG 0.628490 1_3:+1248852 None:intergenic
CACTACAAGTTGGAGAGGAG+AGG 0.629079 1_3:+1252342 None:intergenic
AACAGCACTACAAGTTGGAG+AGG 0.629655 1_3:+1252337 None:intergenic
TGAATGGCCAAATATACCCA+TGG 0.629992 1_3:+1248495 None:intergenic
CTCCAGAAAGCAGCAACCGT+CGG 0.630036 1_3:-1248880 Msa0095870:CDS
ATTCAGGCTTGATGTTGTGG+TGG 0.630169 1_3:+1249058 None:intergenic
CACTACATTAACAACATGAG+AGG 0.631695 1_3:-1248769 Msa0095870:CDS
ACCAACGGCGGAGGAAATGG+TGG 0.634537 1_3:-1248694 Msa0095870:CDS
TTAAGAGACCAAAATTACCA+TGG 0.636860 1_3:-1248512 Msa0095870:exon
TAAGAGACCAAAATTACCAT+GGG 0.640305 1_3:-1248511 Msa0095870:three_prime_UTR
GGAGAAGTGCAGTTGCTGAA+AGG 0.641527 1_3:+1248899 None:intergenic
AAACATTATAGTAGAAAACA+TGG 0.647572 1_3:-1251572 Msa0095870:CDS
AGTTACCTGGGTTACCAGGG+AGG 0.652361 1_3:+1252162 None:intergenic
ACAACTGTTCCTGAGTCGTG+GGG 0.654552 1_3:-1248541 Msa0095870:CDS
AGGATATGCTAACATTCACA+GGG 0.658162 1_3:-1248654 Msa0095870:CDS
CCAACAAAGCCACATCACCT+GGG 0.660119 1_3:-1249127 Msa0095870:CDS
TGGAATTGGACATTAGTGCA+GGG 0.664460 1_3:+1252288 None:intergenic
AACCTACAGCTACATAGGAG+AGG 0.665795 1_3:-1251728 Msa0095870:CDS
CTGGTCAATGCTGAGCTGAG+AGG 0.669761 1_3:+1248825 None:intergenic
TGTGTGTGAGATCTGCAACA+AGG 0.672147 1_3:-1251768 Msa0095870:CDS
GAACGAAGACGGTCTCACGA+GGG 0.672722 1_3:-1248731 Msa0095870:CDS
CTCACCGGAAAGAACGAAGA+CGG 0.675316 1_3:-1248742 Msa0095870:CDS
CAACTGTTCCTGAGTCGTGG+GGG 0.675581 1_3:-1248540 Msa0095870:CDS
AAAGCAAAGGAACAACAAAG+AGG 0.676124 1_3:-1251684 Msa0095870:CDS
TTTCTTGGCCTTACCAACGG+CGG 0.703626 1_3:-1248706 Msa0095870:CDS
AAAGCTCACTCTAAAACCTG+TGG 0.713942 1_3:-1251491 Msa0095870:CDS
AGTGCAGTTGCTGAAAGGTG+TGG 0.715797 1_3:+1248904 None:intergenic
TAGTTAATGAAATTGAAACA+GGG 0.721599 1_3:+1248386 None:intergenic
GATATGCTAACATTCACAGG+GGG 0.759370 1_3:-1248652 Msa0095870:CDS
GGATATGCTAACATTCACAG+GGG 0.776190 1_3:-1248653 Msa0095870:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATATAATATTATGTTGA+AGG + chr1_3:1250641-1250660 None:intergenic 10.0%
!! TTAAAAATTCATAAATGAAT+TGG - chr1_3:1250986-1251005 Msa0095870:intron 10.0%
!! TAAAAATTCATAAATGAATT+GGG - chr1_3:1250987-1251006 Msa0095870:intron 10.0%
!!! TTTTTGTTTGATTCAAAATA+TGG + chr1_3:1248390-1248409 None:intergenic 15.0%
!! ATTTATAACATGTTAAATTG+TGG - chr1_3:1248689-1248708 Msa0095870:CDS 15.0%
!! TGGATTAATTTAATAAATCA+TGG + chr1_3:1249455-1249474 None:intergenic 15.0%
!! AATAGAAACATAAGAAAAAA+TGG + chr1_3:1249475-1249494 None:intergenic 15.0%
!!! CAAATCATAATTTTAAATTG+CGG - chr1_3:1249521-1249540 Msa0095870:intron 15.0%
!! AAAAGAATAATTATGAAAAC+AGG + chr1_3:1249811-1249830 None:intergenic 15.0%
!!! TCATTTATGAATTTTTAACA+TGG + chr1_3:1250984-1251003 None:intergenic 15.0%
!! TATTCTAAATGTAATTACTA+GGG + chr1_3:1251169-1251188 None:intergenic 15.0%
!! TTATTCTAAATGTAATTACT+AGG + chr1_3:1251170-1251189 None:intergenic 15.0%
!!! AACAATAAATAAACCTTTTT+AGG - chr1_3:1251196-1251215 Msa0095870:intron 15.0%
!!! ACAATAAATAAACCTTTTTA+GGG - chr1_3:1251197-1251216 Msa0095870:intron 15.0%
!! TAACTAATTATTAGTTACCT+GGG + chr1_3:1248658-1248677 None:intergenic 20.0%
!! TTAACTAATTATTAGTTACC+TGG + chr1_3:1248659-1248678 None:intergenic 20.0%
!!! TTACATGTGATTTTAAATTG+CGG + chr1_3:1248798-1248817 None:intergenic 20.0%
!! TATACTAAACAATTGAACTA+AGG + chr1_3:1248914-1248933 None:intergenic 20.0%
!! AAACATTATAGTAGAAAACA+TGG - chr1_3:1249233-1249252 Msa0095870:CDS 20.0%
!!! TCTCTAAAACATTTATATTG+CGG + chr1_3:1249565-1249584 None:intergenic 20.0%
!! ATTTAATCTCTACCAAATTA+TGG + chr1_3:1249715-1249734 None:intergenic 20.0%
!! TCTTATAGTAATTATGATGA+TGG + chr1_3:1250602-1250621 None:intergenic 20.0%
!!! AATGAATTTGATTTTGAGAA+TGG + chr1_3:1250913-1250932 None:intergenic 20.0%
!! TAACTAAATAAATAACACCA+TGG - chr1_3:1251404-1251423 Msa0095870:intron 20.0%
!! TAGTTAATGAAATTGAAACA+GGG + chr1_3:1252422-1252441 None:intergenic 20.0%
!! ATAGTTAATGAAATTGAAAC+AGG + chr1_3:1252423-1252442 None:intergenic 20.0%
! AATTTATGGTTGAAACTAAG+TGG + chr1_3:1248586-1248605 None:intergenic 25.0%
!! CCATAATATAAAGGATTTTG+AGG + chr1_3:1248752-1248771 None:intergenic 25.0%
! CCTCAAAATCCTTTATATTA+TGG - chr1_3:1248749-1248768 Msa0095870:CDS 25.0%
!! TTTGTTGCTAATAGTGTTTT+TGG + chr1_3:1249011-1249030 None:intergenic 25.0%
! AGAGAATATAAATGTGATTG+TGG - chr1_3:1249341-1249360 Msa0095870:intron 25.0%
! CTTTCATGAAACAATTTCAA+GGG + chr1_3:1249878-1249897 None:intergenic 25.0%
!! TGTTTTCTGAATCCTAAAAA+AGG - chr1_3:1249969-1249988 Msa0095870:intron 25.0%
! CAGTAGTAGATAAAAACAAA+AGG + chr1_3:1250044-1250063 None:intergenic 25.0%
!! TTTCCAATTTTAAATGTGTC+AGG - chr1_3:1250195-1250214 Msa0095870:intron 25.0%
!! TTCCAATTTTAAATGTGTCA+GGG - chr1_3:1250196-1250215 Msa0095870:intron 25.0%
! TATACACTCTTATGTTGATA+TGG - chr1_3:1250260-1250279 Msa0095870:intron 25.0%
! AAGTTCAGAGAAAAATACTA+TGG + chr1_3:1250421-1250440 None:intergenic 25.0%
!!! TATAGTAATTATGATGATGG+TGG + chr1_3:1250599-1250618 None:intergenic 25.0%
! ATATTATGTTGAAGGATTGT+TGG + chr1_3:1250633-1250652 None:intergenic 25.0%
! AACATAATTTATGTCCCAAT+TGG - chr1_3:1250735-1250754 Msa0095870:intron 25.0%
! TAGATGACTCAAATTATGAT+TGG - chr1_3:1251090-1251109 Msa0095870:intron 25.0%
! AATTATGATTGGATAAATGC+AGG - chr1_3:1251101-1251120 Msa0095870:intron 25.0%
! ATGCAGGATAATTTCAATTT+AGG - chr1_3:1251117-1251136 Msa0095870:intron 25.0%
!!! TACTAGTACATTTTAGAGAA+GGG - chr1_3:1251226-1251245 Msa0095870:intron 25.0%
!!! CTAGACTTTTTAGGTTAATT+TGG - chr1_3:1251256-1251275 Msa0095870:intron 25.0%
!! TTTAGGTTAATTTGGTTTAG+AGG - chr1_3:1251264-1251283 Msa0095870:intron 25.0%
! ATAAAAAAGAGCCTCTAATA+TGG + chr1_3:1251385-1251404 None:intergenic 25.0%
!! AAATATACCCATGGTAATTT+TGG + chr1_3:1252304-1252323 None:intergenic 25.0%
! AAAATTACCATGGGTATATT+TGG - chr1_3:1252303-1252322 Msa0095870:exon 25.0%
! GGTATATAAGATGAATTGAA+TGG + chr1_3:1252329-1252348 None:intergenic 25.0%
!! ATCTTATATACCTTTTGTCA+TGG - chr1_3:1252337-1252356 Msa0095870:five_prime_UTR 25.0%
!! TTTTATATACCTTCTTGTCA+TGG - chr1_3:1252474-1252493 Msa0095870:five_prime_UTR 25.0%
AAAGAGAAGAGAAAAAAGCT+AGG + chr1_3:1248440-1248459 None:intergenic 30.0%
!!! CTTTTTTTCTTGGACTTTTG+AGG + chr1_3:1248620-1248639 None:intergenic 30.0%
GAAAACATGGTGAGAAAAAA+TGG - chr1_3:1249246-1249265 Msa0095870:CDS 30.0%
TTTATATTCTCTAGTACCAC+AGG + chr1_3:1249333-1249352 None:intergenic 30.0%
AGTACTATACCTGGAAAAAA+GGG + chr1_3:1249369-1249388 None:intergenic 30.0%
TAGTACTATACCTGGAAAAA+AGG + chr1_3:1249370-1249389 None:intergenic 30.0%
!!! TGTTTTAGAGATTTGCGTAA+CGG - chr1_3:1249574-1249593 Msa0095870:intron 30.0%
AACAATAAGGCAAATGCAAT+CGG + chr1_3:1249609-1249628 None:intergenic 30.0%
TTGCAGCACAATAAACAATA+AGG + chr1_3:1249622-1249641 None:intergenic 30.0%
!!! ATAGTTTTAGGTTACGATTG+CGG + chr1_3:1249677-1249696 None:intergenic 30.0%
AATTATGGTAAATACACCGT+AGG + chr1_3:1249700-1249719 None:intergenic 30.0%
ACGGTGTATTTACCATAATT+TGG - chr1_3:1249700-1249719 Msa0095870:intron 30.0%
CCTTTCATGAAACAATTTCA+AGG + chr1_3:1249879-1249898 None:intergenic 30.0%
CCTTGAAATTGTTTCATGAA+AGG - chr1_3:1249876-1249895 Msa0095870:intron 30.0%
ATTCTAGTCTCTTTAGCAAT+TGG + chr1_3:1249939-1249958 None:intergenic 30.0%
!!! ACATTCATTTGGCCTTTTTT+AGG + chr1_3:1249984-1250003 None:intergenic 30.0%
! AGATAAAAACAAAAGGTGTG+TGG + chr1_3:1250037-1250056 None:intergenic 30.0%
!! CAGATTTGTTGCAGATTTAT+CGG + chr1_3:1250462-1250481 None:intergenic 30.0%
CTTCTATAACTTCATTACAG+TGG - chr1_3:1250499-1250518 Msa0095870:intron 30.0%
ATAACTTCATTACAGTGGAT+TGG - chr1_3:1250504-1250523 Msa0095870:intron 30.0%
! TTTTGCATGCATAAAGCAAA+AGG - chr1_3:1250668-1250687 Msa0095870:intron 30.0%
GGGACATAAATTATGTTACA+GGG + chr1_3:1250732-1250751 None:intergenic 30.0%
TGGGACATAAATTATGTTAC+AGG + chr1_3:1250733-1250752 None:intergenic 30.0%
!! ATTGCTGTGTTTTGAACAAT+CGG - chr1_3:1251013-1251032 Msa0095870:intron 30.0%
!! CTACTAGTACATTTTAGAGA+AGG - chr1_3:1251225-1251244 Msa0095870:intron 30.0%
!! TCACTTGTGTTTTTATTGAG+GGG + chr1_3:1251327-1251346 None:intergenic 30.0%
!! GTCACTTGTGTTTTTATTGA+GGG + chr1_3:1251328-1251347 None:intergenic 30.0%
!! TGTCACTTGTGTTTTTATTG+AGG + chr1_3:1251329-1251348 None:intergenic 30.0%
TAAAAACACAAGTGACATGT+TGG - chr1_3:1251332-1251351 Msa0095870:intron 30.0%
! CTAATATGGTCTTGATTCAA+TGG + chr1_3:1251371-1251390 None:intergenic 30.0%
TTGAATCAAGACCATATTAG+AGG - chr1_3:1251371-1251390 Msa0095870:intron 30.0%
TTGCATCATACTTATAACCA+TGG + chr1_3:1251424-1251443 None:intergenic 30.0%
! TTTTATTGTGTGAAAACTGC+AGG - chr1_3:1251500-1251519 Msa0095870:CDS 30.0%
!! GGAAACTTTGTTGTTGATTT+GGG + chr1_3:1251654-1251673 None:intergenic 30.0%
!! TGGAAACTTTGTTGTTGATT+TGG + chr1_3:1251655-1251674 None:intergenic 30.0%
GAGTATTATTAAGGTTGCTA+GGG + chr1_3:1251726-1251745 None:intergenic 30.0%
! AGAGTATTATTAAGGTTGCT+AGG + chr1_3:1251727-1251746 None:intergenic 30.0%
ATGATGTCATTATGCTCTTA+GGG + chr1_3:1251831-1251850 None:intergenic 30.0%
GTTGTTAATGTAGTGATCAA+CGG + chr1_3:1252031-1252050 None:intergenic 30.0%
TTAAGAGACCAAAATTACCA+TGG - chr1_3:1252293-1252312 Msa0095870:CDS 30.0%
TAAGAGACCAAAATTACCAT+GGG - chr1_3:1252294-1252313 Msa0095870:CDS 30.0%
AGAAGAGAAAAAAGCTAGGT+AGG + chr1_3:1248436-1248455 None:intergenic 35.0%
AGAAAAACAGCACTACAAGT+TGG + chr1_3:1248476-1248495 None:intergenic 35.0%
ATTAGTGCAGGGAACATATT+TGG + chr1_3:1248509-1248528 None:intergenic 35.0%
! TTCTGAGAAAGAAGTGGAAT+TGG + chr1_3:1248534-1248553 None:intergenic 35.0%
! TGTTTCTTCTGAGAAAGAAG+TGG + chr1_3:1248540-1248559 None:intergenic 35.0%
TAGTTGCGGCCATAATATAA+AGG + chr1_3:1248761-1248780 None:intergenic 35.0%
TCTGCAACTGTAATTAGTTG+CGG + chr1_3:1248775-1248794 None:intergenic 35.0%
ATCAAAACCTACAGCTACAT+AGG - chr1_3:1249072-1249091 Msa0095870:CDS 35.0%
! TTTGCTTTAACTTCCATGGT+AGG + chr1_3:1249109-1249128 None:intergenic 35.0%
TACCATGGAAGTTAAAGCAA+AGG - chr1_3:1249108-1249127 Msa0095870:CDS 35.0%
! TTCCTTTGCTTTAACTTCCA+TGG + chr1_3:1249113-1249132 None:intergenic 35.0%
AAAGCAAAGGAACAACAAAG+AGG - chr1_3:1249121-1249140 Msa0095870:CDS 35.0%
TGTTCATCATAACCCTTCAA+GGG - chr1_3:1249184-1249203 Msa0095870:CDS 35.0%
TCTATGCTGTTCATTCTGAT+TGG - chr1_3:1249291-1249310 Msa0095870:intron 35.0%
AGCAGTAATAGTACTATACC+TGG + chr1_3:1249378-1249397 None:intergenic 35.0%
TTTGCAACACAACAACAACT+AGG - chr1_3:1249650-1249669 Msa0095870:intron 35.0%
CGTAACCTAAAACTATCCTA+CGG - chr1_3:1249681-1249700 Msa0095870:intron 35.0%
! ATACACCGTAGGATAGTTTT+AGG + chr1_3:1249689-1249708 None:intergenic 35.0%
TGAAAGGTTGCATGAAATTG+TGG - chr1_3:1249892-1249911 Msa0095870:intron 35.0%
AAAAAGGCCAAATGAATGTG+CGG - chr1_3:1249985-1250004 Msa0095870:intron 35.0%
! CACCCTGACACATTTAAAAT+TGG + chr1_3:1250201-1250220 None:intergenic 35.0%
ACTCTTATGTTGATATGGAG+TGG - chr1_3:1250265-1250284 Msa0095870:intron 35.0%
CTCTTATGTTGATATGGAGT+GGG - chr1_3:1250266-1250285 Msa0095870:intron 35.0%
! TGCAGTCTCTAAGAAAATGA+TGG - chr1_3:1250289-1250308 Msa0095870:intron 35.0%
!! TTACAGTGGATTGGATTACA+TGG - chr1_3:1250513-1250532 Msa0095870:intron 35.0%
TATGCATGATGCAATTGATG+TGG + chr1_3:1250698-1250717 None:intergenic 35.0%
AAATCATGCATGGGATAAAG+GGG + chr1_3:1250804-1250823 None:intergenic 35.0%
GAAATCATGCATGGGATAAA+GGG + chr1_3:1250805-1250824 None:intergenic 35.0%
AGAACTTCACAAGTCTTCTT+TGG - chr1_3:1250858-1250877 Msa0095870:intron 35.0%
! TTTTGAACAATCGGTCACAT+TGG - chr1_3:1251022-1251041 Msa0095870:intron 35.0%
! GGTTGAAAGCTAGACTTTTT+AGG - chr1_3:1251247-1251266 Msa0095870:intron 35.0%
!! TTTGTTGTTGATTTGGGAAG+AGG + chr1_3:1251648-1251667 None:intergenic 35.0%
TATTAAGGTTGCTAGGGTTA+GGG + chr1_3:1251720-1251739 None:intergenic 35.0%
TTATTAAGGTTGCTAGGGTT+AGG + chr1_3:1251721-1251740 None:intergenic 35.0%
!! TGTGGTGGAGAGTATTATTA+AGG + chr1_3:1251735-1251754 None:intergenic 35.0%
GTGTGAAAATTTGGAGATTC+AGG + chr1_3:1251766-1251785 None:intergenic 35.0%
GATGATGTCATTATGCTCTT+AGG + chr1_3:1251832-1251851 None:intergenic 35.0%
CACTACATTAACAACATGAG+AGG - chr1_3:1252036-1252055 Msa0095870:intron 35.0%
TAGCATATCCTTTACATCCA+AGG + chr1_3:1252142-1252161 None:intergenic 35.0%
AAGGATATGCTAACATTCAC+AGG - chr1_3:1252150-1252169 Msa0095870:intron 35.0%
AGGATATGCTAACATTCACA+GGG - chr1_3:1252151-1252170 Msa0095870:intron 35.0%
!!! TCATCATGTTTTGATGAGGT+TGG + chr1_3:1252197-1252216 None:intergenic 35.0%
!!! AGCATCATCATGTTTTGATG+AGG + chr1_3:1252201-1252220 None:intergenic 35.0%
!!! AAGCAGGTTTTGGTTTTCTT+GGG - chr1_3:1252238-1252257 Msa0095870:CDS 35.0%
AAACAGTACTCCATGACAAA+AGG + chr1_3:1252350-1252369 None:intergenic 35.0%
GTGTATCCAAGTCTCATTCT+TGG - chr1_3:1248322-1248341 Msa0095870:three_prime_UTR 40.0%
GCTCTCAAAAAGTAGCTATC+AGG - chr1_3:1248344-1248363 Msa0095870:three_prime_UTR 40.0%
TGGAATTGGACATTAGTGCA+GGG + chr1_3:1248520-1248539 None:intergenic 40.0%
AGGCTGTTGTGAGGAATTTA+TGG + chr1_3:1248600-1248619 None:intergenic 40.0%
!!! AGGGAGGCTTCTTTTTTTCT+TGG + chr1_3:1248630-1248649 None:intergenic 40.0%
AAGAAAAAAAGAAGCCTCCC+TGG - chr1_3:1248629-1248648 Msa0095870:CDS 40.0%
ATTAGTTACCTGGGTTACCA+GGG + chr1_3:1248649-1248668 None:intergenic 40.0%
TATTAGTTACCTGGGTTACC+AGG + chr1_3:1248650-1248669 None:intergenic 40.0%
TTAAATTGTGGTCGCAGTTG+CGG - chr1_3:1248701-1248720 Msa0095870:CDS 40.0%
AAAGCTATCACTTCAGCATC+AGG + chr1_3:1248984-1249003 None:intergenic 40.0%
GGGTTATGATGAACACATGA+AGG + chr1_3:1249179-1249198 None:intergenic 40.0%
GTGTTCATCATAACCCTTCA+AGG - chr1_3:1249183-1249202 Msa0095870:CDS 40.0%
!! AAAGCTCACTCTAAAACCTG+TGG - chr1_3:1249314-1249333 Msa0095870:intron 40.0%
!!! ATTGTGGTACCCTTTTTTCC+AGG - chr1_3:1249357-1249376 Msa0095870:intron 40.0%
TAGAGATTTGCGTAACGGTT+TGG - chr1_3:1249579-1249598 Msa0095870:intron 40.0%
TTAACTGCCGCACATTCATT+TGG + chr1_3:1249995-1250014 None:intergenic 40.0%
!! ATGATGATGGTGGAAGTCTT+GGG + chr1_3:1250589-1250608 None:intergenic 40.0%
!! TATGATGATGGTGGAAGTCT+TGG + chr1_3:1250590-1250609 None:intergenic 40.0%
! TCAATGGGTTTGGACCAATT+GGG + chr1_3:1250752-1250771 None:intergenic 40.0%
! GATTAACGTGTCAATGGGTT+TGG + chr1_3:1250762-1250781 None:intergenic 40.0%
! ACACGGATTAACGTGTCAAT+GGG + chr1_3:1250767-1250786 None:intergenic 40.0%
! TACACGGATTAACGTGTCAA+TGG + chr1_3:1250768-1250787 None:intergenic 40.0%
AATCATGCATGGGATAAAGG+GGG + chr1_3:1250803-1250822 None:intergenic 40.0%
GGAAATCATGCATGGGATAA+AGG + chr1_3:1250806-1250825 None:intergenic 40.0%
AGGTAAGGGAAATCATGCAT+GGG + chr1_3:1250813-1250832 None:intergenic 40.0%
AAGGTAAGGGAAATCATGCA+TGG + chr1_3:1250814-1250833 None:intergenic 40.0%
! TTCCCTTACCTTTTTGCCAA+TGG - chr1_3:1250822-1250841 Msa0095870:intron 40.0%
! TCCCTTACCTTTTTGCCAAT+GGG - chr1_3:1250823-1250842 Msa0095870:intron 40.0%
! CTAGGGATGAACGAGTTTTA+AGG + chr1_3:1251152-1251171 None:intergenic 40.0%
!! CTAGTAGAAGCACCCTAAAA+AGG + chr1_3:1251212-1251231 None:intergenic 40.0%
ATTGTGTGAAAACTGCAGGA+AGG - chr1_3:1251504-1251523 Msa0095870:CDS 40.0%
!! TAATGGGTTTGTGTTTGTGG+TGG + chr1_3:1251611-1251630 None:intergenic 40.0%
!! GACTAATGGGTTTGTGTTTG+TGG + chr1_3:1251614-1251633 None:intergenic 40.0%
GGAAGAGAGATTGGACTAAT+GGG + chr1_3:1251627-1251646 None:intergenic 40.0%
AGGAAGAGAGATTGGACTAA+TGG + chr1_3:1251628-1251647 None:intergenic 40.0%
!!! TGATGTGGCTTTGTTGGTTT+TGG + chr1_3:1251675-1251694 None:intergenic 40.0%
!! GAGAGGTTGGTGTGAAAATT+TGG + chr1_3:1251775-1251794 None:intergenic 40.0%
GGATATGCTAACATTCACAG+GGG - chr1_3:1252152-1252171 Msa0095870:intron 40.0%
GATATGCTAACATTCACAGG+GGG - chr1_3:1252153-1252172 Msa0095870:intron 40.0%
!!! TGTTTTGATGAGGTTGGTGT+TGG + chr1_3:1252191-1252210 None:intergenic 40.0%
!!! CAAGCAGGTTTTGGTTTTCT+TGG - chr1_3:1252237-1252256 Msa0095870:CDS 40.0%
TGAATGGCCAAATATACCCA+TGG + chr1_3:1252313-1252332 None:intergenic 40.0%
ATACCTTCTTGTCATGGACA+TGG - chr1_3:1252480-1252499 Msa0095870:five_prime_UTR 40.0%
TGAGAGCCAAGAATGAGACT+TGG + chr1_3:1248331-1248350 None:intergenic 45.0%
! AACAGCACTACAAGTTGGAG+AGG + chr1_3:1248471-1248490 None:intergenic 45.0%
GTGGAATTGGACATTAGTGC+AGG + chr1_3:1248521-1248540 None:intergenic 45.0%
TGTGTGTGAGATCTGCAACA+AGG - chr1_3:1249037-1249056 Msa0095870:CDS 45.0%
GTGTGTGAGATCTGCAACAA+GGG - chr1_3:1249038-1249057 Msa0095870:CDS 45.0%
AACCTACAGCTACATAGGAG+AGG - chr1_3:1249077-1249096 Msa0095870:CDS 45.0%
TGATGAACACATGAAGGCTC+TGG + chr1_3:1249173-1249192 None:intergenic 45.0%
! GTCAATGGGTTTGGACCAAT+TGG + chr1_3:1250753-1250772 None:intergenic 45.0%
CCCCATTGGCAAAAAGGTAA+GGG + chr1_3:1250827-1250846 None:intergenic 45.0%
! CCCTTACCTTTTTGCCAATG+GGG - chr1_3:1250824-1250843 Msa0095870:intron 45.0%
AATGTGCCCCATTGGCAAAA+AGG + chr1_3:1250833-1250852 None:intergenic 45.0%
!! TTGTGGTGGTGATGGCTAAT+TGG + chr1_3:1251597-1251616 None:intergenic 45.0%
! GTTTGTGTTTGTGGTGGTGA+TGG + chr1_3:1251605-1251624 None:intergenic 45.0%
TTGGGAAGAGGAAGAGAGAT+TGG + chr1_3:1251636-1251655 None:intergenic 45.0%
ATTCAGGCTTGATGTTGTGG+TGG + chr1_3:1251750-1251769 None:intergenic 45.0%
GAGATTCAGGCTTGATGTTG+TGG + chr1_3:1251753-1251772 None:intergenic 45.0%
TGACGAAGAAATGGTAGAGG+AGG + chr1_3:1251802-1251821 None:intergenic 45.0%
GTGTGACGAAGAAATGGTAG+AGG + chr1_3:1251805-1251824 None:intergenic 45.0%
GGGTTTGTGTGACGAAGAAA+TGG + chr1_3:1251811-1251830 None:intergenic 45.0%
!! GACTTTCTTGGCCTTACCAA+CGG - chr1_3:1252096-1252115 Msa0095870:intron 45.0%
TGGTGAGTCCTTGGATGTAA+AGG - chr1_3:1252131-1252150 Msa0095870:intron 45.0%
!! TTTGATGAGGTTGGTGTTGG+TGG + chr1_3:1252188-1252207 None:intergenic 45.0%
AAGTCACAGTCACAACAAGC+AGG - chr1_3:1252222-1252241 Msa0095870:CDS 45.0%
! CAGTCACAACAAGCAGGTTT+TGG - chr1_3:1252228-1252247 Msa0095870:CDS 45.0%
AACAACTGTTCCTGAGTCGT+GGG - chr1_3:1252263-1252282 Msa0095870:CDS 45.0%
ACTCCATGTCCATGACAAGA+AGG + chr1_3:1252486-1252505 None:intergenic 45.0%
! CACTACAAGTTGGAGAGGAG+AGG + chr1_3:1248466-1248485 None:intergenic 50.0%
!!! GGACTTTTGAGGCTGTTGTG+AGG + chr1_3:1248609-1248628 None:intergenic 50.0%
GTCCTCTCCTATGTAGCTGT+AGG + chr1_3:1249082-1249101 None:intergenic 50.0%
GGAGAGGACATAACCTACCA+TGG - chr1_3:1249093-1249112 Msa0095870:CDS 50.0%
CATAACCCTTCAAGGGCTCT+TGG - chr1_3:1249191-1249210 Msa0095870:CDS 50.0%
GATCTCCAAGAGCCCTTGAA+GGG + chr1_3:1249199-1249218 None:intergenic 50.0%
AGATCTCCAAGAGCCCTTGA+AGG + chr1_3:1249200-1249219 None:intergenic 50.0%
AGGGCTCTTGGAGATCTTAC+AGG - chr1_3:1249203-1249222 Msa0095870:CDS 50.0%
ATGCATGGGATAAAGGGGGA+GGG + chr1_3:1250799-1250818 None:intergenic 50.0%
GCCCCATTGGCAAAAAGGTA+AGG + chr1_3:1250828-1250847 None:intergenic 50.0%
TCTCGTAGAATGTGCCCCAT+TGG + chr1_3:1250841-1250860 None:intergenic 50.0%
ACCAACAAAGCCACATCACC+TGG - chr1_3:1251677-1251696 Msa0095870:CDS 50.0%
CCAACAAAGCCACATCACCT+GGG - chr1_3:1251678-1251697 Msa0095870:CDS 50.0%
! GGTTAGGGTTTGGTTGAGGT+GGG + chr1_3:1251705-1251724 None:intergenic 50.0%
! CTAGGGTTAGGGTTTGGTTG+AGG + chr1_3:1251709-1251728 None:intergenic 50.0%
AGGTTGCTAGGGTTAGGGTT+TGG + chr1_3:1251715-1251734 None:intergenic 50.0%
TAGAGGAGGAGAAGAGAGGT+TGG + chr1_3:1251788-1251807 None:intergenic 50.0%
ATGGTAGAGGAGGAGAAGAG+AGG + chr1_3:1251792-1251811 None:intergenic 50.0%
! TGCTGAAAGGTGTGGTGACA+TGG + chr1_3:1251896-1251915 None:intergenic 50.0%
AGTGCAGTTGCTGAAAGGTG+TGG + chr1_3:1251904-1251923 None:intergenic 50.0%
! GGAGAAGTGCAGTTGCTGAA+AGG + chr1_3:1251909-1251928 None:intergenic 50.0%
! TGAGCTGAGAGGTGTGATGT+TGG + chr1_3:1251972-1251991 None:intergenic 50.0%
!! CAGCTCAGCATTGACCAGTT+TGG - chr1_3:1251985-1252004 Msa0095870:intron 50.0%
GCTGAGTCACTGATCCAAAC+TGG + chr1_3:1252002-1252021 None:intergenic 50.0%
CTCACCGGAAAGAACGAAGA+CGG - chr1_3:1252063-1252082 Msa0095870:intron 50.0%
GAGACCGTCTTCGTTCTTTC+CGG + chr1_3:1252070-1252089 None:intergenic 50.0%
!! TTTCTTGGCCTTACCAACGG+CGG - chr1_3:1252099-1252118 Msa0095870:intron 50.0%
! AGGAAATGGTGGTGAGTCCT+TGG - chr1_3:1252122-1252141 Msa0095870:intron 50.0%
CAACAACTGTTCCTGAGTCG+TGG - chr1_3:1252262-1252281 Msa0095870:CDS 50.0%
ACAACTGTTCCTGAGTCGTG+GGG - chr1_3:1252264-1252283 Msa0095870:CDS 50.0%
AGTTACCTGGGTTACCAGGG+AGG + chr1_3:1248646-1248665 None:intergenic 55.0%
GGGGAGGGGACTAATGTACA+CGG + chr1_3:1250784-1250803 None:intergenic 55.0%
TGCATGGGATAAAGGGGGAG+GGG + chr1_3:1250798-1250817 None:intergenic 55.0%
CATGCATGGGATAAAGGGGG+AGG + chr1_3:1250800-1250819 None:intergenic 55.0%
!! CCCAGGTGATGTGGCTTTGT+TGG + chr1_3:1251681-1251700 None:intergenic 55.0%
! GGGTTAGGGTTTGGTTGAGG+TGG + chr1_3:1251706-1251725 None:intergenic 55.0%
! TGCTGTGTGCTGACGTGGAA+GGG + chr1_3:1251856-1251875 None:intergenic 55.0%
! TTGCTGTGTGCTGACGTGGA+AGG + chr1_3:1251857-1251876 None:intergenic 55.0%
! AAGGTTGCTGTGTGCTGACG+TGG + chr1_3:1251861-1251880 None:intergenic 55.0%
GACATGGCAGCAGTGGAAGA+AGG + chr1_3:1251880-1251899 None:intergenic 55.0%
CTCCAGAAAGCAGCAACCGT+CGG - chr1_3:1251925-1251944 Msa0095870:intron 55.0%
! ATGTTGGCTGCCTGTGATGG+CGG + chr1_3:1251956-1251975 None:intergenic 55.0%
! GTGATGTTGGCTGCCTGTGA+TGG + chr1_3:1251959-1251978 None:intergenic 55.0%
CTGGTCAATGCTGAGCTGAG+AGG + chr1_3:1251983-1252002 None:intergenic 55.0%
AACATGAGAGGCTGCCTCAC+CGG - chr1_3:1252048-1252067 Msa0095870:intron 55.0%
CGTCTTCGTTCTTTCCGGTG+AGG + chr1_3:1252065-1252084 None:intergenic 55.0%
AGAACGAAGACGGTCTCACG+AGG - chr1_3:1252073-1252092 Msa0095870:intron 55.0%
GAACGAAGACGGTCTCACGA+GGG - chr1_3:1252074-1252093 Msa0095870:intron 55.0%
GGTCTCACGAGGGACTTTCT+TGG - chr1_3:1252084-1252103 Msa0095870:intron 55.0%
CATTTCCTCCGCCGTTGGTA+AGG + chr1_3:1252110-1252129 None:intergenic 55.0%
CTTACCAACGGCGGAGGAAA+TGG - chr1_3:1252108-1252127 Msa0095870:intron 55.0%
CAACTGTTCCTGAGTCGTGG+GGG - chr1_3:1252265-1252284 Msa0095870:CDS 55.0%
TAACAGTTCCCCCACGACTC+AGG + chr1_3:1252276-1252295 None:intergenic 55.0%
AGAAGCCTCCCTGGTAACCC+AGG - chr1_3:1248638-1248657 Msa0095870:CDS 60.0%
GTTTGGTTGAGGTGGGTCCC+AGG + chr1_3:1251698-1251717 None:intergenic 60.0%
GTGTGGTGACATGGCAGCAG+TGG + chr1_3:1251887-1251906 None:intergenic 60.0%
!! CACCGACGGTTGCTGCTTTC+TGG + chr1_3:1251930-1251949 None:intergenic 60.0%
ACCAACGGCGGAGGAAATGG+TGG - chr1_3:1252111-1252130 Msa0095870:intron 60.0%
ACCACCATTTCCTCCGCCGT+TGG + chr1_3:1252115-1252134 None:intergenic 60.0%
GAGGTGGGTCCCAGGTGATG+TGG + chr1_3:1251690-1251709 None:intergenic 65.0%
!! TGTGATGGCGGTGGCACCGA+CGG + chr1_3:1251944-1251963 None:intergenic 65.0%
!! TTGGCTGCCTGTGATGGCGG+TGG + chr1_3:1251953-1251972 None:intergenic 65.0%
!! CTTGGCCTTACCAACGGCGG+AGG - chr1_3:1252102-1252121 Msa0095870:intron 65.0%
!! GTCGGTGCCACCGCCATCAC+AGG - chr1_3:1251943-1251962 Msa0095870:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 1248305 1252522 1248305 ID=Msa0095870;Name=Msa0095870
chr1_3 mRNA 1248305 1252522 1248305 ID=Msa0095870-mRNA-1;Parent=Msa0095870;Name=Msa0095870-mRNA-1;_AED=0.02;_eAED=0.02;_QI=207|1|1|1|1|1|3|226|440
chr1_3 exon 1248305 1249305 1248305 ID=Msa0095870-mRNA-1:exon:210;Parent=Msa0095870-mRNA-1
chr1_3 exon 1251449 1251848 1251449 ID=Msa0095870-mRNA-1:exon:209;Parent=Msa0095870-mRNA-1
chr1_3 exon 1252168 1252522 1252168 ID=Msa0095870-mRNA-1:exon:208;Parent=Msa0095870-mRNA-1
chr1_3 five_prime_UTR 1252316 1252522 1252316 ID=Msa0095870-mRNA-1:five_prime_utr;Parent=Msa0095870-mRNA-1
chr1_3 CDS 1252168 1252315 1252168 ID=Msa0095870-mRNA-1:cds;Parent=Msa0095870-mRNA-1
chr1_3 CDS 1251449 1251848 1251449 ID=Msa0095870-mRNA-1:cds;Parent=Msa0095870-mRNA-1
chr1_3 CDS 1248531 1249305 1248531 ID=Msa0095870-mRNA-1:cds;Parent=Msa0095870-mRNA-1
chr1_3 three_prime_UTR 1248305 1248530 1248305 ID=Msa0095870-mRNA-1:three_prime_utr;Parent=Msa0095870-mRNA-1
Gene Sequence

>Msa0095870

ATGTTCCCTGCACTAATGTCCAATTCCACTTCTTTCTCAGAAGAAACAAGTGTCTCTTCTACTAGATTAAACCACTTAGTTTCAACCATAAATTCCTCACAACAGCCTCAAAAGTCCAAGAAAAAAAGAAGCCTCCCTGGTAACCCAGATCCTGATGCTGAAGTGATAGCTTTATCACCAAAAACACTATTAGCAACAAATAGATTTGTGTGTGAGATCTGCAACAAGGGTTTTCAAAGAGATCAAAACCTACAGCTACATAGGAGAGGACATAACCTACCATGGAAGTTAAAGCAAAGGAACAACAAAGAGGTTATTAAAAAGAGAGCTTATGTTTGTCCAGAGCCTTCATGTGTTCATCATAACCCTTCAAGGGCTCTTGGAGATCTTACAGGAATCAAGAAACATTATAGTAGAAAACATGGTGAGAAAAAATGGAAATGTGATAAGTGCTCAAAGATCTATGCTGTTCATTCTGATTGGAAAGCTCACTCTAAAACCTGTGGTACTAGAGAATATAAATGTGATTGTGGTACCCTTTTTTCCAGGAAGGACAGCTTCATAACTCATAGAGCATTTTGTGATGCATTAGCTGAAGAAAGTGCAAGAATGTCTGCAAACCAATTAGCCATCACCACCACAAACACAAACCCATTAGTCCAATCTCTCTTCCTCTTCCCAAATCAACAACAAAGTTTCCAAAACCAACAAAGCCACATCACCTGGGACCCACCTCAACCAAACCCTAACCCTAGCAACCTTAATAATACTCTCCACCACAACATCAAGCCTGAATCTCCAAATTTTCACACCAACCTCTCTTCTCCTCCTCTACCATTTCTTCGTCACACAAACCCTAAGAGCATAATGACATCATCACCCTTCCACGTCAGCACACAGCAACCTTCTTCCACTGCTGCCATGTCACCACACCTTTCAGCAACTGCACTTCTCCAGAAAGCAGCAACCGTCGGTGCCACCGCCATCACAGGCAGCCAACATCACACCTCTCAGCTCAGCATTGACCAGTTTGGATCAGTGACTCAGCTCAACTCCGTTGATCACTACATTAACAACATGAGAGGCTGCCTCACCGGAAAGAACGAAGACGGTCTCACGAGGGACTTTCTTGGCCTTACCAACGGCGGAGGAAATGGTGGTGAGTCCTTGGATGTAAAGGATATGCTAACATTCACAGGGGGTGTAGAATACCACCAACACCAACCTCATCAAAACATGATGATGCTCAAGTCACAGTCACAACAAGCAGGTTTTGGTTTTCTTGGGACAACAACTGTTCCTGAGTCGTGGGGGAACTGTTAA
Protein sequence

>Msa0095870

MFPALMSNSTSFSEETSVSSTRLNHLVSTINSSQQPQKSKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNNKEVIKKRAYVCPEPSCVHHNPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKIYAVHSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARMSANQLAITTTNTNPLVQSLFLFPNQQQSFQNQQSHITWDPPQPNPNPSNLNNTLHHNIKPESPNFHTNLSSPPLPFLRHTNPKSIMTSSPFHVSTQQPSSTAAMSPHLSATALLQKAATVGATAITGSQHHTSQLSIDQFGSVTQLNSVDHYINNMRGCLTGKNEDGLTRDFLGLTNGGGNGGESLDVKDMLTFTGGVEYHQHQPHQNMMMLKSQSQQAGFGFLGTTTVPESWGNC*