Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0096600 | KEH41184.1 | 61.254 | 351 | 115 | 4 | 2 | 351 | 5 | 335 | 1.55e-131 | 389 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0096600 | sp|Q9M8K2|REM21_ARATH | 23.256 | 344 | 222 | 6 | 6 | 349 | 23 | 324 | 4.16e-20 | 92.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0096600 | A0A072VGK8 | 61.254 | 351 | 115 | 4 | 2 | 351 | 5 | 335 | 7.41e-132 | 389 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0096600 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0096600 | MtrunA17_Chr1g0169171 | 60.559 | 322 | 106 | 4 | 31 | 351 | 1 | 302 | 4.22e-118 | 343 |
| Msa0096600 | MtrunA17_Chr1g0169081 | 91.716 | 169 | 13 | 1 | 184 | 351 | 156 | 324 | 2.52e-111 | 327 |
| Msa0096600 | MtrunA17_Chr1g0169161 | 72.674 | 172 | 45 | 1 | 179 | 350 | 164 | 333 | 2.00e-87 | 266 |
| Msa0096600 | MtrunA17_Chr3g0125151 | 69.291 | 127 | 37 | 1 | 225 | 351 | 1 | 125 | 2.46e-62 | 195 |
| Msa0096600 | MtrunA17_Chr3g0125161 | 74.359 | 117 | 30 | 0 | 2 | 118 | 16 | 132 | 2.21e-56 | 181 |
| Msa0096600 | MtrunA17_Chr1g0154191 | 26.380 | 163 | 114 | 3 | 9 | 167 | 22 | 182 | 2.45e-14 | 73.6 |
| Msa0096600 | MtrunA17_Chr1g0154111 | 27.692 | 130 | 90 | 2 | 9 | 136 | 26 | 153 | 5.04e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0096600 | AT3G06160.5 | 23.256 | 344 | 222 | 6 | 6 | 349 | 8 | 309 | 3.81e-21 | 92.8 |
| Msa0096600 | AT3G06160.4 | 23.256 | 344 | 222 | 6 | 6 | 349 | 8 | 309 | 3.81e-21 | 92.8 |
| Msa0096600 | AT3G06160.3 | 23.256 | 344 | 222 | 6 | 6 | 349 | 8 | 309 | 3.81e-21 | 92.8 |
| Msa0096600 | AT3G06160.1 | 23.256 | 344 | 222 | 6 | 6 | 349 | 23 | 324 | 4.23e-21 | 92.8 |
| Msa0096600 | AT3G06160.2 | 23.256 | 344 | 222 | 6 | 6 | 349 | 67 | 368 | 9.11e-21 | 92.8 |
| Msa0096600 | AT5G57720.1 | 21.972 | 355 | 202 | 13 | 5 | 349 | 10 | 299 | 2.32e-14 | 73.2 |
| Msa0096600 | AT3G18960.1 | 37.624 | 101 | 59 | 3 | 8 | 107 | 30 | 127 | 7.81e-12 | 64.3 |
| Msa0096600 | AT3G18960.2 | 37.624 | 101 | 59 | 3 | 8 | 107 | 30 | 127 | 9.09e-12 | 63.9 |
| Msa0096600 | AT4G01580.1 | 36.364 | 99 | 59 | 3 | 8 | 105 | 30 | 125 | 2.94e-11 | 62.4 |
| Msa0096600 | AT5G66980.1 | 23.164 | 354 | 223 | 12 | 1 | 348 | 4 | 314 | 7.90e-11 | 63.2 |
Find 58 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAATGAAGTGTGGATTTC+CGG | 0.187944 | 1_3:-2287756 | None:intergenic |
| AAATCCTTGATAACATTCTT+TGG | 0.259575 | 1_3:-2288095 | None:intergenic |
| TGTTAAGGGTGCACATTGTT+AGG | 0.310846 | 1_3:+2288496 | Msa0096600:CDS |
| TGCTGCTGATGATGATATTA+TGG | 0.325258 | 1_3:+2287396 | Msa0096600:CDS |
| GCATCAATTTCGTCGTCTTC+AGG | 0.326868 | 1_3:-2287716 | None:intergenic |
| CTTACCAGCTTTGCACTTGC+AGG | 0.327904 | 1_3:-2287557 | None:intergenic |
| AAGAATTGTACCAATTCATT+AGG | 0.342988 | 1_3:-2287797 | None:intergenic |
| TAGAGACGAAAATTCTTTAG+AGG | 0.344242 | 1_3:+2287174 | Msa0096600:CDS |
| AGATCATGATGATGATATTA+TGG | 0.349539 | 1_3:+2287429 | Msa0096600:CDS |
| ATCAAGTTCACAAAAGCATT+AGG | 0.355825 | 1_3:-2287031 | None:intergenic |
| TGAACTTGATGCGTTCAAAA+AGG | 0.358189 | 1_3:+2287044 | Msa0096600:CDS |
| CTCTTCCTCTACGATCTCTT+AGG | 0.378241 | 1_3:-2287087 | None:intergenic |
| TTGTACCAATTCATTAGGTC+TGG | 0.410085 | 1_3:-2287792 | None:intergenic |
| GCAATGAAGTGTGGATTTCC+GGG | 0.417877 | 1_3:-2287755 | None:intergenic |
| ATATTGAAAATAACATATTC+AGG | 0.423216 | 1_3:+2287221 | Msa0096600:CDS |
| ATATGTGTTCTGCTTATTTG+TGG | 0.425629 | 1_3:-2288330 | None:intergenic |
| TCAAGTTCACAAAAGCATTA+GGG | 0.428525 | 1_3:-2287030 | None:intergenic |
| TCATTCCAGACCTAATGAAT+TGG | 0.430343 | 1_3:+2287787 | Msa0096600:CDS |
| CCTTGCAGTGGCAACATTCA+AGG | 0.435374 | 1_3:-2288145 | None:intergenic |
| CATGGAGGAAAATAACAATA+TGG | 0.446533 | 1_3:+2287294 | Msa0096600:CDS |
| CATCTCTCCACGTACGTACT+TGG | 0.449196 | 1_3:-2288365 | None:intergenic |
| CATGTCAAAGCTCGTCGTAT+TGG | 0.455772 | 1_3:+2287115 | Msa0096600:CDS |
| TATTCCAAAGAATGTTATCA+AGG | 0.458986 | 1_3:+2288091 | Msa0096600:CDS |
| GATGGTCGAGTACGTGTGCT+AGG | 0.481978 | 1_3:+2288384 | Msa0096600:CDS |
| TTGTGGCAAGATGTGATGAT+AGG | 0.486090 | 1_3:-2288313 | None:intergenic |
| GAGATCGTAGAGGAAGAGAT+TGG | 0.486399 | 1_3:+2287092 | Msa0096600:CDS |
| GAAGAAATCTGGGTAATCCT+TGG | 0.489215 | 1_3:-2286794 | None:intergenic |
| CAATATGGAGGATGAGGAAG+AGG | 0.500994 | 1_3:+2287309 | Msa0096600:CDS |
| GTCGAGTACGTGTGCTAGGG+TGG | 0.503803 | 1_3:+2288388 | Msa0096600:CDS |
| AGAACCTGCAAGTGCAAAGC+TGG | 0.504053 | 1_3:+2287553 | Msa0096600:CDS |
| AAATAACAATATGGAGGATG+AGG | 0.505646 | 1_3:+2287303 | Msa0096600:CDS |
| AGAAAAGCACACTGAAAGAA+TGG | 0.515189 | 1_3:+2286831 | Msa0096600:CDS |
| ATCAATGTGTGAAAAGAAGA+AGG | 0.520397 | 1_3:+2287264 | Msa0096600:CDS |
| AAGGGTGCACATTGTTAGGA+AGG | 0.552584 | 1_3:+2288500 | Msa0096600:CDS |
| GATGAGGAAGAGGACGGTGA+TGG | 0.556360 | 1_3:+2287319 | Msa0096600:CDS |
| CGAGAATGAAAGAATGTACA+AGG | 0.558420 | 1_3:+2287501 | Msa0096600:CDS |
| TGATGATGATATTATGGCAG+AGG | 0.566025 | 1_3:+2287435 | Msa0096600:CDS |
| AGACGAAAATTCTTTAGAGG+AGG | 0.570120 | 1_3:+2287177 | Msa0096600:CDS |
| GAGATTGTGCTGCGTGAAGA+TGG | 0.578226 | 1_3:+2288462 | Msa0096600:CDS |
| CTTGCAGTGGCAACATTCAA+GGG | 0.578433 | 1_3:-2288144 | None:intergenic |
| CAAGTACGTACGTGGAGAGA+TGG | 0.582116 | 1_3:+2288366 | Msa0096600:CDS |
| CCTTGAATGTTGCCACTGCA+AGG | 0.583961 | 1_3:+2288145 | Msa0096600:CDS |
| AAAGAAGAAGGTAAGTGACA+TGG | 0.601455 | 1_3:+2287276 | Msa0096600:CDS |
| AATTGTAACTAAGATGGCCA+AGG | 0.605912 | 1_3:+2286777 | None:intergenic |
| GAAGAAGGTAAGTGACATGG+AGG | 0.606864 | 1_3:+2287279 | Msa0096600:CDS |
| CATGATACCGATGATGATGA+TGG | 0.612164 | 1_3:+2287466 | Msa0096600:CDS |
| ATGGTCGAGTACGTGTGCTA+GGG | 0.616130 | 1_3:+2288385 | Msa0096600:CDS |
| TCGAGTACGTGTGCTAGGGT+GGG | 0.622095 | 1_3:+2288389 | Msa0096600:CDS |
| GTCATCACCATCATCATCAT+CGG | 0.626181 | 1_3:-2287473 | None:intergenic |
| TGATGATGATATTATGGCAG+AGG | 0.627493 | 1_3:+2287402 | Msa0096600:CDS |
| AATTATACTATACCTTGCAG+TGG | 0.634623 | 1_3:-2288157 | None:intergenic |
| GGAGGAAAATAACAATATGG+AGG | 0.639547 | 1_3:+2287297 | Msa0096600:CDS |
| AGAGAGGCCAAGTACGTACG+TGG | 0.642453 | 1_3:+2288358 | Msa0096600:CDS |
| GCTGAAATGTATATTCAACC+CGG | 0.655563 | 1_3:+2287737 | Msa0096600:CDS |
| ATGGAGGATGAGGAAGAGGA+CGG | 0.656729 | 1_3:+2287313 | Msa0096600:CDS |
| AGAACACATATCGAAAAGAG+AGG | 0.666945 | 1_3:+2288342 | Msa0096600:CDS |
| TGATGATGATGACGATGACG+AGG | 0.734080 | 1_3:+2287345 | Msa0096600:CDS |
| TTCATCCTAAGAGATCGTAG+AGG | 0.754677 | 1_3:+2287082 | Msa0096600:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTGAAAATAACATATTC+AGG | + | chr1_3:2287221-2287240 | Msa0096600:CDS | 15.0% |
| !! | TGTCAAAAAAAAAAAAGTAA+TGG | - | chr1_3:2287828-2287847 | None:intergenic | 15.0% |
| !!! | TTACTTTTTTTTTTTTGACA+TGG | + | chr1_3:2287828-2287847 | Msa0096600:intron | 15.0% |
| !! | ATATTGAAAATAACATATTC+AGG | + | chr1_3:2287221-2287240 | Msa0096600:CDS | 15.0% |
| !! | TGTCAAAAAAAAAAAAGTAA+TGG | - | chr1_3:2287828-2287847 | None:intergenic | 15.0% |
| !!! | TTACTTTTTTTTTTTTGACA+TGG | + | chr1_3:2287828-2287847 | Msa0096600:intron | 15.0% |
| !!! | AAAAAACTTTGAAGAAATCT+GGG | - | chr1_3:2286807-2286826 | None:intergenic | 20.0% |
| !! | CAAAAAGGAATAAAAAACAT+TGG | - | chr1_3:2286892-2286911 | None:intergenic | 20.0% |
| !! | TTTCAATATGTGTAAAAACA+AGG | - | chr1_3:2287210-2287229 | None:intergenic | 20.0% |
| !!! | CAAAATAGTAGTTTTATCTT+CGG | - | chr1_3:2287596-2287615 | None:intergenic | 20.0% |
| !! | CTAAATCAAAATAAATCATC+AGG | - | chr1_3:2287664-2287683 | None:intergenic | 20.0% |
| !!! | GATGATTTATTTTGATTTAG+CGG | + | chr1_3:2287664-2287683 | Msa0096600:intron | 20.0% |
| !! | TCATAATAGTGAAAAATGAA+AGG | - | chr1_3:2288193-2288212 | None:intergenic | 20.0% |
| !!! | AAAAAACTTTGAAGAAATCT+GGG | - | chr1_3:2286807-2286826 | None:intergenic | 20.0% |
| !! | CAAAAAGGAATAAAAAACAT+TGG | - | chr1_3:2286892-2286911 | None:intergenic | 20.0% |
| !! | TTTCAATATGTGTAAAAACA+AGG | - | chr1_3:2287210-2287229 | None:intergenic | 20.0% |
| !!! | CAAAATAGTAGTTTTATCTT+CGG | - | chr1_3:2287596-2287615 | None:intergenic | 20.0% |
| !! | CTAAATCAAAATAAATCATC+AGG | - | chr1_3:2287664-2287683 | None:intergenic | 20.0% |
| !!! | GATGATTTATTTTGATTTAG+CGG | + | chr1_3:2287664-2287683 | Msa0096600:intron | 20.0% |
| !! | TCATAATAGTGAAAAATGAA+AGG | - | chr1_3:2288193-2288212 | None:intergenic | 20.0% |
| !! | GAAAAAACTTTGAAGAAATC+TGG | - | chr1_3:2286808-2286827 | None:intergenic | 25.0% |
| !!! | CAAACTGGTTTTTATCAAAA+AGG | - | chr1_3:2286907-2286926 | None:intergenic | 25.0% |
| !! | CTTTTTGATAAAAACCAGTT+TGG | + | chr1_3:2286905-2286924 | Msa0096600:intron | 25.0% |
| !! | AGATCATGATGATGATATTA+TGG | + | chr1_3:2287429-2287448 | Msa0096600:CDS | 25.0% |
| !! | ATATATTTTGCAATGAAGTG+TGG | - | chr1_3:2287767-2287786 | None:intergenic | 25.0% |
| ! | AAGAATTGTACCAATTCATT+AGG | - | chr1_3:2287800-2287819 | None:intergenic | 25.0% |
| ! | AATAAAGAGAATAACTAGAC+AGG | - | chr1_3:2287966-2287985 | None:intergenic | 25.0% |
| ! | TATTCCAAAGAATGTTATCA+AGG | + | chr1_3:2288091-2288110 | Msa0096600:CDS | 25.0% |
| !! | AAATCCTTGATAACATTCTT+TGG | - | chr1_3:2288098-2288117 | None:intergenic | 25.0% |
| ! | GAAAAATGAAAGGTAAAGAT+TGG | - | chr1_3:2288183-2288202 | None:intergenic | 25.0% |
| !! | CATTTTTCACTATTATGAAG+TGG | + | chr1_3:2288195-2288214 | Msa0096600:intron | 25.0% |
| ! | ATCAACACATTAAACAAAAG+TGG | - | chr1_3:2288224-2288243 | None:intergenic | 25.0% |
| ! | ATGGAAAAATCGAAATGTTA+AGG | + | chr1_3:2288481-2288500 | Msa0096600:CDS | 25.0% |
| ! | TGGAAAAATCGAAATGTTAA+GGG | + | chr1_3:2288482-2288501 | Msa0096600:CDS | 25.0% |
| !! | GAAAAAACTTTGAAGAAATC+TGG | - | chr1_3:2286808-2286827 | None:intergenic | 25.0% |
| !!! | CAAACTGGTTTTTATCAAAA+AGG | - | chr1_3:2286907-2286926 | None:intergenic | 25.0% |
| !! | CTTTTTGATAAAAACCAGTT+TGG | + | chr1_3:2286905-2286924 | Msa0096600:intron | 25.0% |
| !! | AGATCATGATGATGATATTA+TGG | + | chr1_3:2287429-2287448 | Msa0096600:CDS | 25.0% |
| !! | ATATATTTTGCAATGAAGTG+TGG | - | chr1_3:2287767-2287786 | None:intergenic | 25.0% |
| ! | AAGAATTGTACCAATTCATT+AGG | - | chr1_3:2287800-2287819 | None:intergenic | 25.0% |
| ! | AATAAAGAGAATAACTAGAC+AGG | - | chr1_3:2287966-2287985 | None:intergenic | 25.0% |
| ! | TATTCCAAAGAATGTTATCA+AGG | + | chr1_3:2288091-2288110 | Msa0096600:CDS | 25.0% |
| !! | AAATCCTTGATAACATTCTT+TGG | - | chr1_3:2288098-2288117 | None:intergenic | 25.0% |
| ! | GAAAAATGAAAGGTAAAGAT+TGG | - | chr1_3:2288183-2288202 | None:intergenic | 25.0% |
| !! | CATTTTTCACTATTATGAAG+TGG | + | chr1_3:2288195-2288214 | Msa0096600:intron | 25.0% |
| ! | ATCAACACATTAAACAAAAG+TGG | - | chr1_3:2288224-2288243 | None:intergenic | 25.0% |
| ! | ATGGAAAAATCGAAATGTTA+AGG | + | chr1_3:2288481-2288500 | Msa0096600:CDS | 25.0% |
| ! | TGGAAAAATCGAAATGTTAA+GGG | + | chr1_3:2288482-2288501 | Msa0096600:CDS | 25.0% |
| AAAAAACATTGGAGAAAGCA+TGG | - | chr1_3:2286881-2286900 | None:intergenic | 30.0% | |
| TATTTCTTTGCATACCAAAC+TGG | - | chr1_3:2286922-2286941 | None:intergenic | 30.0% | |
| !! | TCAAGTTCACAAAAGCATTA+GGG | - | chr1_3:2287033-2287052 | None:intergenic | 30.0% |
| !! | ATCAAGTTCACAAAAGCATT+AGG | - | chr1_3:2287034-2287053 | None:intergenic | 30.0% |
| TTCAAAAAGGAAGGTCATAA+AGG | + | chr1_3:2287057-2287076 | Msa0096600:CDS | 30.0% | |
| TAGAGACGAAAATTCTTTAG+AGG | + | chr1_3:2287174-2287193 | Msa0096600:CDS | 30.0% | |
| ATCAATGTGTGAAAAGAAGA+AGG | + | chr1_3:2287264-2287283 | Msa0096600:CDS | 30.0% | |
| CATGGAGGAAAATAACAATA+TGG | + | chr1_3:2287294-2287313 | Msa0096600:CDS | 30.0% | |
| AAATAACAATATGGAGGATG+AGG | + | chr1_3:2287303-2287322 | Msa0096600:CDS | 30.0% | |
| !!! | TATTTTGATTTAGCGGACAT+TGG | + | chr1_3:2287671-2287690 | Msa0096600:intron | 30.0% |
| !!! | ATTTTGATTTAGCGGACATT+GGG | + | chr1_3:2287672-2287691 | Msa0096600:intron | 30.0% |
| CAAGTAAAATTGCAACAACT+TGG | - | chr1_3:2287999-2288018 | None:intergenic | 30.0% | |
| AATTATACTATACCTTGCAG+TGG | - | chr1_3:2288160-2288179 | None:intergenic | 30.0% | |
| !!! | AAGTTGCATTCATCCTTTTT+TGG | + | chr1_3:2288256-2288275 | Msa0096600:intron | 30.0% |
| ATATGTGTTCTGCTTATTTG+TGG | - | chr1_3:2288333-2288352 | None:intergenic | 30.0% | |
| AAAAAACATTGGAGAAAGCA+TGG | - | chr1_3:2286881-2286900 | None:intergenic | 30.0% | |
| TATTTCTTTGCATACCAAAC+TGG | - | chr1_3:2286922-2286941 | None:intergenic | 30.0% | |
| !! | TCAAGTTCACAAAAGCATTA+GGG | - | chr1_3:2287033-2287052 | None:intergenic | 30.0% |
| !! | ATCAAGTTCACAAAAGCATT+AGG | - | chr1_3:2287034-2287053 | None:intergenic | 30.0% |
| TTCAAAAAGGAAGGTCATAA+AGG | + | chr1_3:2287057-2287076 | Msa0096600:CDS | 30.0% | |
| TAGAGACGAAAATTCTTTAG+AGG | + | chr1_3:2287174-2287193 | Msa0096600:CDS | 30.0% | |
| ATCAATGTGTGAAAAGAAGA+AGG | + | chr1_3:2287264-2287283 | Msa0096600:CDS | 30.0% | |
| CATGGAGGAAAATAACAATA+TGG | + | chr1_3:2287294-2287313 | Msa0096600:CDS | 30.0% | |
| AAATAACAATATGGAGGATG+AGG | + | chr1_3:2287303-2287322 | Msa0096600:CDS | 30.0% | |
| !!! | TATTTTGATTTAGCGGACAT+TGG | + | chr1_3:2287671-2287690 | Msa0096600:intron | 30.0% |
| !!! | ATTTTGATTTAGCGGACATT+GGG | + | chr1_3:2287672-2287691 | Msa0096600:intron | 30.0% |
| CAAGTAAAATTGCAACAACT+TGG | - | chr1_3:2287999-2288018 | None:intergenic | 30.0% | |
| AATTATACTATACCTTGCAG+TGG | - | chr1_3:2288160-2288179 | None:intergenic | 30.0% | |
| !!! | AAGTTGCATTCATCCTTTTT+TGG | + | chr1_3:2288256-2288275 | Msa0096600:intron | 30.0% |
| ATATGTGTTCTGCTTATTTG+TGG | - | chr1_3:2288333-2288352 | None:intergenic | 30.0% | |
| ! | AGAAAAGCACACTGAAAGAA+TGG | + | chr1_3:2286831-2286850 | Msa0096600:CDS | 35.0% |
| TGAACTTGATGCGTTCAAAA+AGG | + | chr1_3:2287044-2287063 | Msa0096600:CDS | 35.0% | |
| !!! | GATGAGCTTTATTTTGACGA+TGG | + | chr1_3:2287139-2287158 | Msa0096600:CDS | 35.0% |
| !!! | AGCTTTATTTTGACGATGGT+TGG | + | chr1_3:2287143-2287162 | Msa0096600:CDS | 35.0% |
| ! | AGACGAAAATTCTTTAGAGG+AGG | + | chr1_3:2287177-2287196 | Msa0096600:CDS | 35.0% |
| AAAGAAGAAGGTAAGTGACA+TGG | + | chr1_3:2287276-2287295 | Msa0096600:CDS | 35.0% | |
| GGAGGAAAATAACAATATGG+AGG | + | chr1_3:2287297-2287316 | Msa0096600:CDS | 35.0% | |
| ! | TGCTGCTGATGATGATATTA+TGG | + | chr1_3:2287396-2287415 | Msa0096600:CDS | 35.0% |
| ! | TGATGATGATATTATGGCAG+AGG | + | chr1_3:2287402-2287421 | Msa0096600:CDS | 35.0% |
| ! | TGATGATGATATTATGGCAG+AGG | + | chr1_3:2287402-2287421 | Msa0096600:CDS | 35.0% |
| CGAGAATGAAAGAATGTACA+AGG | + | chr1_3:2287501-2287520 | Msa0096600:CDS | 35.0% | |
| GCTGAAATGTATATTCAACC+CGG | + | chr1_3:2287737-2287756 | Msa0096600:CDS | 35.0% | |
| TCATTCCAGACCTAATGAAT+TGG | + | chr1_3:2287787-2287806 | Msa0096600:CDS | 35.0% | |
| TTGTACCAATTCATTAGGTC+TGG | - | chr1_3:2287795-2287814 | None:intergenic | 35.0% | |
| GATAAGAAATGACAAGTCGA+AGG | - | chr1_3:2287922-2287941 | None:intergenic | 35.0% | |
| ACTTCAAATGTGAAGAGTGA+TGG | - | chr1_3:2288070-2288089 | None:intergenic | 35.0% | |
| !!! | CATCCTTTTTTGGTTATGAC+AGG | + | chr1_3:2288266-2288285 | Msa0096600:intron | 35.0% |
| TGTCCTGTCATAACCAAAAA+AGG | - | chr1_3:2288272-2288291 | None:intergenic | 35.0% | |
| AGAACACATATCGAAAAGAG+AGG | + | chr1_3:2288342-2288361 | Msa0096600:CDS | 35.0% | |
| ! | AGAAAAGCACACTGAAAGAA+TGG | + | chr1_3:2286831-2286850 | Msa0096600:CDS | 35.0% |
| TGAACTTGATGCGTTCAAAA+AGG | + | chr1_3:2287044-2287063 | Msa0096600:CDS | 35.0% | |
| !!! | GATGAGCTTTATTTTGACGA+TGG | + | chr1_3:2287139-2287158 | Msa0096600:CDS | 35.0% |
| !!! | AGCTTTATTTTGACGATGGT+TGG | + | chr1_3:2287143-2287162 | Msa0096600:CDS | 35.0% |
| ! | AGACGAAAATTCTTTAGAGG+AGG | + | chr1_3:2287177-2287196 | Msa0096600:CDS | 35.0% |
| AAAGAAGAAGGTAAGTGACA+TGG | + | chr1_3:2287276-2287295 | Msa0096600:CDS | 35.0% | |
| GGAGGAAAATAACAATATGG+AGG | + | chr1_3:2287297-2287316 | Msa0096600:CDS | 35.0% | |
| ! | TGCTGCTGATGATGATATTA+TGG | + | chr1_3:2287396-2287415 | Msa0096600:CDS | 35.0% |
| ! | TGATGATGATATTATGGCAG+AGG | + | chr1_3:2287402-2287421 | Msa0096600:CDS | 35.0% |
| ! | TGATGATGATATTATGGCAG+AGG | + | chr1_3:2287402-2287421 | Msa0096600:CDS | 35.0% |
| CGAGAATGAAAGAATGTACA+AGG | + | chr1_3:2287501-2287520 | Msa0096600:CDS | 35.0% | |
| GCTGAAATGTATATTCAACC+CGG | + | chr1_3:2287737-2287756 | Msa0096600:CDS | 35.0% | |
| TCATTCCAGACCTAATGAAT+TGG | + | chr1_3:2287787-2287806 | Msa0096600:CDS | 35.0% | |
| TTGTACCAATTCATTAGGTC+TGG | - | chr1_3:2287795-2287814 | None:intergenic | 35.0% | |
| GATAAGAAATGACAAGTCGA+AGG | - | chr1_3:2287922-2287941 | None:intergenic | 35.0% | |
| ACTTCAAATGTGAAGAGTGA+TGG | - | chr1_3:2288070-2288089 | None:intergenic | 35.0% | |
| !!! | CATCCTTTTTTGGTTATGAC+AGG | + | chr1_3:2288266-2288285 | Msa0096600:intron | 35.0% |
| TGTCCTGTCATAACCAAAAA+AGG | - | chr1_3:2288272-2288291 | None:intergenic | 35.0% | |
| AGAACACATATCGAAAAGAG+AGG | + | chr1_3:2288342-2288361 | Msa0096600:CDS | 35.0% | |
| GAAGAAATCTGGGTAATCCT+TGG | - | chr1_3:2286797-2286816 | None:intergenic | 40.0% | |
| CTTGATGCGTTCAAAAAGGA+AGG | + | chr1_3:2287048-2287067 | Msa0096600:CDS | 40.0% | |
| TTCATCCTAAGAGATCGTAG+AGG | + | chr1_3:2287082-2287101 | Msa0096600:CDS | 40.0% | |
| ! | CATGATACCGATGATGATGA+TGG | + | chr1_3:2287466-2287485 | Msa0096600:CDS | 40.0% |
| GTCATCACCATCATCATCAT+CGG | - | chr1_3:2287476-2287495 | None:intergenic | 40.0% | |
| TGCAATGAAGTGTGGATTTC+CGG | - | chr1_3:2287759-2287778 | None:intergenic | 40.0% | |
| TAGTCCATTTGCTTAACCCT+AGG | + | chr1_3:2287872-2287891 | Msa0096600:intron | 40.0% | |
| TCTACCTAGGGTTAAGCAAA+TGG | - | chr1_3:2287879-2287898 | None:intergenic | 40.0% | |
| ATTTGCTTAACCCTAGGTAG+AGG | + | chr1_3:2287878-2287897 | Msa0096600:intron | 40.0% | |
| TAGACAGGCATAGAGTACAA+AGG | - | chr1_3:2287951-2287970 | None:intergenic | 40.0% | |
| ! | TGACATGTTTTGTGAAGCAG+AGG | - | chr1_3:2288124-2288143 | None:intergenic | 40.0% |
| TTGTGGCAAGATGTGATGAT+AGG | - | chr1_3:2288316-2288335 | None:intergenic | 40.0% | |
| ! | TGTTAAGGGTGCACATTGTT+AGG | + | chr1_3:2288496-2288515 | Msa0096600:CDS | 40.0% |
| GAAGAAATCTGGGTAATCCT+TGG | - | chr1_3:2286797-2286816 | None:intergenic | 40.0% | |
| CTTGATGCGTTCAAAAAGGA+AGG | + | chr1_3:2287048-2287067 | Msa0096600:CDS | 40.0% | |
| TTCATCCTAAGAGATCGTAG+AGG | + | chr1_3:2287082-2287101 | Msa0096600:CDS | 40.0% | |
| ! | CATGATACCGATGATGATGA+TGG | + | chr1_3:2287466-2287485 | Msa0096600:CDS | 40.0% |
| GTCATCACCATCATCATCAT+CGG | - | chr1_3:2287476-2287495 | None:intergenic | 40.0% | |
| TGCAATGAAGTGTGGATTTC+CGG | - | chr1_3:2287759-2287778 | None:intergenic | 40.0% | |
| TAGTCCATTTGCTTAACCCT+AGG | + | chr1_3:2287872-2287891 | Msa0096600:intron | 40.0% | |
| TCTACCTAGGGTTAAGCAAA+TGG | - | chr1_3:2287879-2287898 | None:intergenic | 40.0% | |
| ATTTGCTTAACCCTAGGTAG+AGG | + | chr1_3:2287878-2287897 | Msa0096600:intron | 40.0% | |
| TAGACAGGCATAGAGTACAA+AGG | - | chr1_3:2287951-2287970 | None:intergenic | 40.0% | |
| ! | TGACATGTTTTGTGAAGCAG+AGG | - | chr1_3:2288124-2288143 | None:intergenic | 40.0% |
| TTGTGGCAAGATGTGATGAT+AGG | - | chr1_3:2288316-2288335 | None:intergenic | 40.0% | |
| ! | TGTTAAGGGTGCACATTGTT+AGG | + | chr1_3:2288496-2288515 | Msa0096600:CDS | 40.0% |
| CTCTTCCTCTACGATCTCTT+AGG | - | chr1_3:2287090-2287109 | None:intergenic | 45.0% | |
| GAGATCGTAGAGGAAGAGAT+TGG | + | chr1_3:2287092-2287111 | Msa0096600:CDS | 45.0% | |
| CATGTCAAAGCTCGTCGTAT+TGG | + | chr1_3:2287115-2287134 | Msa0096600:CDS | 45.0% | |
| GAAGAAGGTAAGTGACATGG+AGG | + | chr1_3:2287279-2287298 | Msa0096600:CDS | 45.0% | |
| CAATATGGAGGATGAGGAAG+AGG | + | chr1_3:2287309-2287328 | Msa0096600:CDS | 45.0% | |
| ! | TGATGATGATGACGATGACG+AGG | + | chr1_3:2287345-2287364 | Msa0096600:CDS | 45.0% |
| GCATCAATTTCGTCGTCTTC+AGG | - | chr1_3:2287719-2287738 | None:intergenic | 45.0% | |
| GCAATGAAGTGTGGATTTCC+GGG | - | chr1_3:2287758-2287777 | None:intergenic | 45.0% | |
| TCGACTAACTCCTCTACCTA+GGG | - | chr1_3:2287891-2287910 | None:intergenic | 45.0% | |
| TTCGACTAACTCCTCTACCT+AGG | - | chr1_3:2287892-2287911 | None:intergenic | 45.0% | |
| CTTGCAGTGGCAACATTCAA+GGG | - | chr1_3:2288147-2288166 | None:intergenic | 45.0% | |
| ! | AAGGGTGCACATTGTTAGGA+AGG | + | chr1_3:2288500-2288519 | Msa0096600:CDS | 45.0% |
| CTCTTCCTCTACGATCTCTT+AGG | - | chr1_3:2287090-2287109 | None:intergenic | 45.0% | |
| GAGATCGTAGAGGAAGAGAT+TGG | + | chr1_3:2287092-2287111 | Msa0096600:CDS | 45.0% | |
| CATGTCAAAGCTCGTCGTAT+TGG | + | chr1_3:2287115-2287134 | Msa0096600:CDS | 45.0% | |
| GAAGAAGGTAAGTGACATGG+AGG | + | chr1_3:2287279-2287298 | Msa0096600:CDS | 45.0% | |
| CAATATGGAGGATGAGGAAG+AGG | + | chr1_3:2287309-2287328 | Msa0096600:CDS | 45.0% | |
| ! | TGATGATGATGACGATGACG+AGG | + | chr1_3:2287345-2287364 | Msa0096600:CDS | 45.0% |
| GCATCAATTTCGTCGTCTTC+AGG | - | chr1_3:2287719-2287738 | None:intergenic | 45.0% | |
| GCAATGAAGTGTGGATTTCC+GGG | - | chr1_3:2287758-2287777 | None:intergenic | 45.0% | |
| TCGACTAACTCCTCTACCTA+GGG | - | chr1_3:2287891-2287910 | None:intergenic | 45.0% | |
| TTCGACTAACTCCTCTACCT+AGG | - | chr1_3:2287892-2287911 | None:intergenic | 45.0% | |
| CTTGCAGTGGCAACATTCAA+GGG | - | chr1_3:2288147-2288166 | None:intergenic | 45.0% | |
| ! | AAGGGTGCACATTGTTAGGA+AGG | + | chr1_3:2288500-2288519 | Msa0096600:CDS | 45.0% |
| ATGGAGGATGAGGAAGAGGA+CGG | + | chr1_3:2287313-2287332 | Msa0096600:CDS | 50.0% | |
| AGAACCTGCAAGTGCAAAGC+TGG | + | chr1_3:2287553-2287572 | Msa0096600:CDS | 50.0% | |
| CTTACCAGCTTTGCACTTGC+AGG | - | chr1_3:2287560-2287579 | None:intergenic | 50.0% | |
| CCTTGCAGTGGCAACATTCA+AGG | - | chr1_3:2288148-2288167 | None:intergenic | 50.0% | |
| CCTTGAATGTTGCCACTGCA+AGG | + | chr1_3:2288145-2288164 | Msa0096600:CDS | 50.0% | |
| CATCTCTCCACGTACGTACT+TGG | - | chr1_3:2288368-2288387 | None:intergenic | 50.0% | |
| CAAGTACGTACGTGGAGAGA+TGG | + | chr1_3:2288366-2288385 | Msa0096600:CDS | 50.0% | |
| ATGGTCGAGTACGTGTGCTA+GGG | + | chr1_3:2288385-2288404 | Msa0096600:CDS | 50.0% | |
| GAGATTGTGCTGCGTGAAGA+TGG | + | chr1_3:2288462-2288481 | Msa0096600:CDS | 50.0% | |
| ATGGAGGATGAGGAAGAGGA+CGG | + | chr1_3:2287313-2287332 | Msa0096600:CDS | 50.0% | |
| AGAACCTGCAAGTGCAAAGC+TGG | + | chr1_3:2287553-2287572 | Msa0096600:CDS | 50.0% | |
| CTTACCAGCTTTGCACTTGC+AGG | - | chr1_3:2287560-2287579 | None:intergenic | 50.0% | |
| CCTTGCAGTGGCAACATTCA+AGG | - | chr1_3:2288148-2288167 | None:intergenic | 50.0% | |
| CCTTGAATGTTGCCACTGCA+AGG | + | chr1_3:2288145-2288164 | Msa0096600:CDS | 50.0% | |
| CATCTCTCCACGTACGTACT+TGG | - | chr1_3:2288368-2288387 | None:intergenic | 50.0% | |
| CAAGTACGTACGTGGAGAGA+TGG | + | chr1_3:2288366-2288385 | Msa0096600:CDS | 50.0% | |
| ATGGTCGAGTACGTGTGCTA+GGG | + | chr1_3:2288385-2288404 | Msa0096600:CDS | 50.0% | |
| GAGATTGTGCTGCGTGAAGA+TGG | + | chr1_3:2288462-2288481 | Msa0096600:CDS | 50.0% | |
| GATGAGGAAGAGGACGGTGA+TGG | + | chr1_3:2287319-2287338 | Msa0096600:CDS | 55.0% | |
| AGAGAGGCCAAGTACGTACG+TGG | + | chr1_3:2288358-2288377 | Msa0096600:CDS | 55.0% | |
| GATGGTCGAGTACGTGTGCT+AGG | + | chr1_3:2288384-2288403 | Msa0096600:CDS | 55.0% | |
| TCGAGTACGTGTGCTAGGGT+GGG | + | chr1_3:2288389-2288408 | Msa0096600:CDS | 55.0% | |
| GATGAGGAAGAGGACGGTGA+TGG | + | chr1_3:2287319-2287338 | Msa0096600:CDS | 55.0% | |
| AGAGAGGCCAAGTACGTACG+TGG | + | chr1_3:2288358-2288377 | Msa0096600:CDS | 55.0% | |
| GATGGTCGAGTACGTGTGCT+AGG | + | chr1_3:2288384-2288403 | Msa0096600:CDS | 55.0% | |
| TCGAGTACGTGTGCTAGGGT+GGG | + | chr1_3:2288389-2288408 | Msa0096600:CDS | 55.0% | |
| GTCGAGTACGTGTGCTAGGG+TGG | + | chr1_3:2288388-2288407 | Msa0096600:CDS | 60.0% | |
| GTCGAGTACGTGTGCTAGGG+TGG | + | chr1_3:2288388-2288407 | Msa0096600:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 2286790 | 2288527 | 2286790 | ID=Msa0096600;Name=Msa0096600 |
| chr1_3 | mRNA | 2286790 | 2288527 | 2286790 | ID=Msa0096600-mRNA-1;Parent=Msa0096600;Name=Msa0096600-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0|0|1|1|1|5|0|351 |
| chr1_3 | exon | 2286790 | 2286852 | 2286790 | ID=Msa0096600-mRNA-1:exon:584;Parent=Msa0096600-mRNA-1 |
| chr1_3 | exon | 2287025 | 2287574 | 2287025 | ID=Msa0096600-mRNA-1:exon:585;Parent=Msa0096600-mRNA-1 |
| chr1_3 | exon | 2287684 | 2287808 | 2287684 | ID=Msa0096600-mRNA-1:exon:586;Parent=Msa0096600-mRNA-1 |
| chr1_3 | exon | 2288089 | 2288166 | 2288089 | ID=Msa0096600-mRNA-1:exon:587;Parent=Msa0096600-mRNA-1 |
| chr1_3 | exon | 2288288 | 2288527 | 2288288 | ID=Msa0096600-mRNA-1:exon:588;Parent=Msa0096600-mRNA-1 |
| chr1_3 | CDS | 2286790 | 2286852 | 2286790 | ID=Msa0096600-mRNA-1:cds;Parent=Msa0096600-mRNA-1 |
| chr1_3 | CDS | 2287025 | 2287574 | 2287025 | ID=Msa0096600-mRNA-1:cds;Parent=Msa0096600-mRNA-1 |
| chr1_3 | CDS | 2287684 | 2287808 | 2287684 | ID=Msa0096600-mRNA-1:cds;Parent=Msa0096600-mRNA-1 |
| chr1_3 | CDS | 2288089 | 2288166 | 2288089 | ID=Msa0096600-mRNA-1:cds;Parent=Msa0096600-mRNA-1 |
| chr1_3 | CDS | 2288288 | 2288527 | 2288288 | ID=Msa0096600-mRNA-1:cds;Parent=Msa0096600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
