AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0096650

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0096650 MtrunA17_Chr6g0476431 64.865 74 26 0 48 121 3 76 8.55e-32 107
Msa0096650 MtrunA17_Chr2g0296781 66.216 74 25 0 48 121 3 76 3.22e-29 110
Msa0096650 MtrunA17_Chr1g0196541 55.405 74 33 0 48 121 3 76 2.44e-22 90.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 47 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGAGTTATGCCCAATCTA+TGG 0.242427 1_3:+2325029 Msa0096650:CDS
GAATGCATGTATTTCTTAGA+TGG 0.268535 1_3:+2325203 Msa0096650:exon
CTAAAATAGCGTGCTTTGTC+AGG 0.272247 1_3:-2325275 None:intergenic
TATGCCCAATCTATGGGTTT+TGG 0.292447 1_3:+2325036 Msa0096650:CDS
AGGGCTGCATATGAATATTT+TGG 0.330794 1_3:+2325607 Msa0096650:three_prime_UTR
TGATCGGTAATTATGGCATT+TGG 0.337887 1_3:-2325814 None:intergenic
GCATGCACTCTAACCATGTT+TGG 0.393751 1_3:-2325780 None:intergenic
TAACTCCAAAACCCATAGAT+TGG 0.409903 1_3:-2325041 None:intergenic
AAGTGAGGAGACTACGACTT+GGG 0.414907 1_3:+2325456 Msa0096650:three_prime_UTR
TCATGGCCAATCTGTGTTGT+TGG 0.420636 1_3:+2325708 Msa0096650:three_prime_UTR
TGATGGTTTACTCCAACAAA+TGG 0.425908 1_3:-2325688 None:intergenic
TCTGTCTTGATCGGTAATTA+TGG 0.452701 1_3:-2325821 None:intergenic
AACTCCAAAACCCATAGATT+GGG 0.455626 1_3:-2325040 None:intergenic
GATGGTTTACTCCAACAAAT+GGG 0.455733 1_3:-2325687 None:intergenic
GAATATGACATTTGGTGAAA+AGG 0.456326 1_3:+2325412 Msa0096650:three_prime_UTR
CATGGCCAATCTGTGTTGTT+GGG 0.456597 1_3:+2325709 Msa0096650:three_prime_UTR
ACTCCAACAAATGGGGCAAA+AGG 0.479062 1_3:-2325679 None:intergenic
GGTTATGAGAATATGACATT+TGG 0.482364 1_3:+2325404 Msa0096650:three_prime_UTR
TTTGGGCAGATGCGAGATGT+AGG 0.485083 1_3:+2325587 Msa0096650:three_prime_UTR
AGGATACTAAGTCCTTTACT+TGG 0.489445 1_3:+2325752 Msa0096650:three_prime_UTR
TCAATGGTTGTTGAAGCAAA+TGG 0.495114 1_3:+2325383 Msa0096650:three_prime_UTR
TGGATCAAAGTATGTGAGTA+AGG 0.495275 1_3:+2325125 Msa0096650:CDS
AAGAGTTATGCCCAATCTAT+GGG 0.502102 1_3:+2325030 Msa0096650:CDS
ACAACACAGATTGGCCATGA+TGG 0.504337 1_3:-2325705 None:intergenic
TTTCATGGATCTGTCTTGAT+CGG 0.508760 1_3:-2325830 None:intergenic
AGGAGACTACGACTTGGGGC+TGG 0.514634 1_3:+2325461 Msa0096650:three_prime_UTR
ATTTGTATCTTCTGATGAAG+AGG 0.520293 1_3:+2324888 Msa0096650:CDS
TTGGGCAGATGCGAGATGTA+GGG 0.522284 1_3:+2325588 Msa0096650:three_prime_UTR
TGGATCCTCGTTTGAAAAGG+AGG 0.528466 1_3:+2325312 Msa0096650:three_prime_UTR
CACAGCCCAACAACACAGAT+TGG 0.536074 1_3:-2325714 None:intergenic
GGGCTGTGCTTTATTGTCGA+AGG 0.551617 1_3:+2325729 Msa0096650:three_prime_UTR
TTTGTTGGAGTAAACCATCA+TGG 0.557125 1_3:+2325691 Msa0096650:three_prime_UTR
TAAAATAGCGTGCTTTGTCA+GGG 0.562727 1_3:-2325274 None:intergenic
TTAGAACTCAATGATCAAGC+TGG 0.567016 1_3:+2325335 Msa0096650:three_prime_UTR
ACATGGTTAGAGTGCATGCA+TGG 0.583025 1_3:+2325784 Msa0096650:three_prime_UTR
TTACTTGGTTATTCCAAACA+TGG 0.586529 1_3:+2325767 Msa0096650:three_prime_UTR
CTGTGCTTTATTGTCGAAGG+AGG 0.593919 1_3:+2325732 Msa0096650:three_prime_UTR
TGTTTGGAATAACCAAGTAA+AGG 0.602120 1_3:-2325764 None:intergenic
GATGAAGAGGAAATCAGAGA+GGG 0.625109 1_3:+2324901 Msa0096650:CDS
AGTGAGGAGACTACGACTTG+GGG 0.641932 1_3:+2325457 Msa0096650:three_prime_UTR
CTAAATATAGTTCCAACCTG+AGG 0.648571 1_3:-2324979 None:intergenic
AAAGTGAGGAGACTACGACT+TGG 0.649574 1_3:+2325455 Msa0096650:three_prime_UTR
GAAACTATATAGATAAAGTG+AGG 0.649765 1_3:+2325441 Msa0096650:three_prime_UTR
ACTTGGGGCTGGAGATGCTG+AGG 0.650883 1_3:+2325472 Msa0096650:three_prime_UTR
ATGGTTTACTCCAACAAATG+GGG 0.652441 1_3:-2325686 None:intergenic
TTTACTCTAGCATGTAGTCG+TGG 0.653028 1_3:+2325105 Msa0096650:CDS
TGATGAAGAGGAAATCAGAG+AGG 0.679814 1_3:+2324900 Msa0096650:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTAATTTATTGCATTAG+TGG + chr1_3:2324858-2324877 Msa0096650:intron 15.0%
!!! TTTTTAATTTATTGCATTAG+TGG + chr1_3:2324858-2324877 Msa0096650:intron 15.0%
!!! TTTTGATATTGAAACTGATT+TGG + chr1_3:2324760-2324779 Msa0096650:intron 20.0%
!! TAAGCATTAAATACAAATCT+AGG - chr1_3:2324791-2324810 None:intergenic 20.0%
!!! TTTTAGAAGTAGTAAGTTTT+TGG + chr1_3:2325292-2325311 Msa0096650:three_prime_UTR 20.0%
!!! TTTTGATATTGAAACTGATT+TGG + chr1_3:2324760-2324779 Msa0096650:intron 20.0%
!! TAAGCATTAAATACAAATCT+AGG - chr1_3:2324791-2324810 None:intergenic 20.0%
!!! TTTTAGAAGTAGTAAGTTTT+TGG + chr1_3:2325292-2325311 Msa0096650:three_prime_UTR 20.0%
! TAAGTTAACGACCTTAAATT+GGG + chr1_3:2324680-2324699 Msa0096650:intron 25.0%
! AGTAACAAAAATACAGATGA+TGG + chr1_3:2325072-2325091 Msa0096650:CDS 25.0%
! GTAACAAAAATACAGATGAT+GGG + chr1_3:2325073-2325092 Msa0096650:CDS 25.0%
!! GAGTTTTTGTTAAAGGATTT+GGG - chr1_3:2325167-2325186 None:intergenic 25.0%
!! TGAGTTTTTGTTAAAGGATT+TGG - chr1_3:2325168-2325187 None:intergenic 25.0%
! GAAACTATATAGATAAAGTG+AGG + chr1_3:2325441-2325460 Msa0096650:three_prime_UTR 25.0%
! TAAGTTAACGACCTTAAATT+GGG + chr1_3:2324680-2324699 Msa0096650:intron 25.0%
! AGTAACAAAAATACAGATGA+TGG + chr1_3:2325072-2325091 Msa0096650:CDS 25.0%
! GTAACAAAAATACAGATGAT+GGG + chr1_3:2325073-2325092 Msa0096650:CDS 25.0%
!! GAGTTTTTGTTAAAGGATTT+GGG - chr1_3:2325167-2325186 None:intergenic 25.0%
!! TGAGTTTTTGTTAAAGGATT+TGG - chr1_3:2325168-2325187 None:intergenic 25.0%
! GAAACTATATAGATAAAGTG+AGG + chr1_3:2325441-2325460 Msa0096650:three_prime_UTR 25.0%
GTAAGTTAACGACCTTAAAT+TGG + chr1_3:2324679-2324698 Msa0096650:intron 30.0%
!! ATAGTTTGATCAGTTGATGA+GGG - chr1_3:2324717-2324736 None:intergenic 30.0%
ATTTGTATCTTCTGATGAAG+AGG + chr1_3:2324888-2324907 Msa0096650:CDS 30.0%
! TTGCACTGAGTTTTTGTTAA+AGG - chr1_3:2325174-2325193 None:intergenic 30.0%
TTTAACAAAAACTCAGTGCA+AGG + chr1_3:2325173-2325192 Msa0096650:CDS 30.0%
GAATGCATGTATTTCTTAGA+TGG + chr1_3:2325203-2325222 Msa0096650:exon 30.0%
! AAGCAGAAATTTTCGATCAA+TGG + chr1_3:2325367-2325386 Msa0096650:three_prime_UTR 30.0%
GGTTATGAGAATATGACATT+TGG + chr1_3:2325404-2325423 Msa0096650:three_prime_UTR 30.0%
! GAATATGACATTTGGTGAAA+AGG + chr1_3:2325412-2325431 Msa0096650:three_prime_UTR 30.0%
! TGTTTGGAATAACCAAGTAA+AGG - chr1_3:2325767-2325786 None:intergenic 30.0%
TTACTTGGTTATTCCAAACA+TGG + chr1_3:2325767-2325786 Msa0096650:three_prime_UTR 30.0%
ATCCATGAAAAATGCAATTG+CGG + chr1_3:2325843-2325862 Msa0096650:three_prime_UTR 30.0%
GTAAGTTAACGACCTTAAAT+TGG + chr1_3:2324679-2324698 Msa0096650:intron 30.0%
!! ATAGTTTGATCAGTTGATGA+GGG - chr1_3:2324717-2324736 None:intergenic 30.0%
ATTTGTATCTTCTGATGAAG+AGG + chr1_3:2324888-2324907 Msa0096650:CDS 30.0%
! TTGCACTGAGTTTTTGTTAA+AGG - chr1_3:2325174-2325193 None:intergenic 30.0%
TTTAACAAAAACTCAGTGCA+AGG + chr1_3:2325173-2325192 Msa0096650:CDS 30.0%
GAATGCATGTATTTCTTAGA+TGG + chr1_3:2325203-2325222 Msa0096650:exon 30.0%
! AAGCAGAAATTTTCGATCAA+TGG + chr1_3:2325367-2325386 Msa0096650:three_prime_UTR 30.0%
GGTTATGAGAATATGACATT+TGG + chr1_3:2325404-2325423 Msa0096650:three_prime_UTR 30.0%
! GAATATGACATTTGGTGAAA+AGG + chr1_3:2325412-2325431 Msa0096650:three_prime_UTR 30.0%
! TGTTTGGAATAACCAAGTAA+AGG - chr1_3:2325767-2325786 None:intergenic 30.0%
TTACTTGGTTATTCCAAACA+TGG + chr1_3:2325767-2325786 Msa0096650:three_prime_UTR 30.0%
ATCCATGAAAAATGCAATTG+CGG + chr1_3:2325843-2325862 Msa0096650:three_prime_UTR 30.0%
ATGGGTGATAACCCAATTTA+AGG - chr1_3:2324694-2324713 None:intergenic 35.0%
! CATAGTTTGATCAGTTGATG+AGG - chr1_3:2324718-2324737 None:intergenic 35.0%
TCATGAAGATGAAAAACCTC+AGG + chr1_3:2324963-2324982 Msa0096650:CDS 35.0%
CTAAATATAGTTCCAACCTG+AGG - chr1_3:2324982-2325001 None:intergenic 35.0%
AAGAGTTATGCCCAATCTAT+GGG + chr1_3:2325030-2325049 Msa0096650:CDS 35.0%
AACTCCAAAACCCATAGATT+GGG - chr1_3:2325043-2325062 None:intergenic 35.0%
TAACTCCAAAACCCATAGAT+TGG - chr1_3:2325044-2325063 None:intergenic 35.0%
TGGATCAAAGTATGTGAGTA+AGG + chr1_3:2325125-2325144 Msa0096650:CDS 35.0%
TAAAATAGCGTGCTTTGTCA+GGG - chr1_3:2325277-2325296 None:intergenic 35.0%
! TTTTGGATCCTCGTTTGAAA+AGG + chr1_3:2325309-2325328 Msa0096650:three_prime_UTR 35.0%
TTAGAACTCAATGATCAAGC+TGG + chr1_3:2325335-2325354 Msa0096650:three_prime_UTR 35.0%
TCAATGGTTGTTGAAGCAAA+TGG + chr1_3:2325383-2325402 Msa0096650:three_prime_UTR 35.0%
! AGTCGCTTACGAAATGTTTT+TGG + chr1_3:2325569-2325588 Msa0096650:three_prime_UTR 35.0%
! GTCGCTTACGAAATGTTTTT+GGG + chr1_3:2325570-2325589 Msa0096650:three_prime_UTR 35.0%
! AGGGCTGCATATGAATATTT+TGG + chr1_3:2325607-2325626 Msa0096650:three_prime_UTR 35.0%
ATGGTTTACTCCAACAAATG+GGG - chr1_3:2325689-2325708 None:intergenic 35.0%
GATGGTTTACTCCAACAAAT+GGG - chr1_3:2325690-2325709 None:intergenic 35.0%
TGATGGTTTACTCCAACAAA+TGG - chr1_3:2325691-2325710 None:intergenic 35.0%
TTTGTTGGAGTAAACCATCA+TGG + chr1_3:2325691-2325710 Msa0096650:three_prime_UTR 35.0%
AGGATACTAAGTCCTTTACT+TGG + chr1_3:2325752-2325771 Msa0096650:three_prime_UTR 35.0%
TGATCGGTAATTATGGCATT+TGG - chr1_3:2325817-2325836 None:intergenic 35.0%
TCTGTCTTGATCGGTAATTA+TGG - chr1_3:2325824-2325843 None:intergenic 35.0%
TTTCATGGATCTGTCTTGAT+CGG - chr1_3:2325833-2325852 None:intergenic 35.0%
ATGGGTGATAACCCAATTTA+AGG - chr1_3:2324694-2324713 None:intergenic 35.0%
! CATAGTTTGATCAGTTGATG+AGG - chr1_3:2324718-2324737 None:intergenic 35.0%
TCATGAAGATGAAAAACCTC+AGG + chr1_3:2324963-2324982 Msa0096650:CDS 35.0%
CTAAATATAGTTCCAACCTG+AGG - chr1_3:2324982-2325001 None:intergenic 35.0%
AAGAGTTATGCCCAATCTAT+GGG + chr1_3:2325030-2325049 Msa0096650:CDS 35.0%
AACTCCAAAACCCATAGATT+GGG - chr1_3:2325043-2325062 None:intergenic 35.0%
TAACTCCAAAACCCATAGAT+TGG - chr1_3:2325044-2325063 None:intergenic 35.0%
TGGATCAAAGTATGTGAGTA+AGG + chr1_3:2325125-2325144 Msa0096650:CDS 35.0%
TAAAATAGCGTGCTTTGTCA+GGG - chr1_3:2325277-2325296 None:intergenic 35.0%
! TTTTGGATCCTCGTTTGAAA+AGG + chr1_3:2325309-2325328 Msa0096650:three_prime_UTR 35.0%
TTAGAACTCAATGATCAAGC+TGG + chr1_3:2325335-2325354 Msa0096650:three_prime_UTR 35.0%
TCAATGGTTGTTGAAGCAAA+TGG + chr1_3:2325383-2325402 Msa0096650:three_prime_UTR 35.0%
! AGTCGCTTACGAAATGTTTT+TGG + chr1_3:2325569-2325588 Msa0096650:three_prime_UTR 35.0%
! GTCGCTTACGAAATGTTTTT+GGG + chr1_3:2325570-2325589 Msa0096650:three_prime_UTR 35.0%
! AGGGCTGCATATGAATATTT+TGG + chr1_3:2325607-2325626 Msa0096650:three_prime_UTR 35.0%
ATGGTTTACTCCAACAAATG+GGG - chr1_3:2325689-2325708 None:intergenic 35.0%
GATGGTTTACTCCAACAAAT+GGG - chr1_3:2325690-2325709 None:intergenic 35.0%
TGATGGTTTACTCCAACAAA+TGG - chr1_3:2325691-2325710 None:intergenic 35.0%
TTTGTTGGAGTAAACCATCA+TGG + chr1_3:2325691-2325710 Msa0096650:three_prime_UTR 35.0%
AGGATACTAAGTCCTTTACT+TGG + chr1_3:2325752-2325771 Msa0096650:three_prime_UTR 35.0%
TGATCGGTAATTATGGCATT+TGG - chr1_3:2325817-2325836 None:intergenic 35.0%
TCTGTCTTGATCGGTAATTA+TGG - chr1_3:2325824-2325843 None:intergenic 35.0%
TTTCATGGATCTGTCTTGAT+CGG - chr1_3:2325833-2325852 None:intergenic 35.0%
!! TTGATCAGTTGATGAGGGAT+GGG - chr1_3:2324712-2324731 None:intergenic 40.0%
!! TTTGATCAGTTGATGAGGGA+TGG - chr1_3:2324713-2324732 None:intergenic 40.0%
TGATGAAGAGGAAATCAGAG+AGG + chr1_3:2324900-2324919 Msa0096650:CDS 40.0%
GATGAAGAGGAAATCAGAGA+GGG + chr1_3:2324901-2324920 Msa0096650:CDS 40.0%
GAAGATGAAAAACCTCAGGT+TGG + chr1_3:2324967-2324986 Msa0096650:CDS 40.0%
CAAGAGTTATGCCCAATCTA+TGG + chr1_3:2325029-2325048 Msa0096650:CDS 40.0%
! TATGCCCAATCTATGGGTTT+TGG + chr1_3:2325036-2325055 Msa0096650:CDS 40.0%
TTTACTCTAGCATGTAGTCG+TGG + chr1_3:2325105-2325124 Msa0096650:CDS 40.0%
CTAAAATAGCGTGCTTTGTC+AGG - chr1_3:2325278-2325297 None:intergenic 40.0%
! TCTAACCTCCTTTTCAAACG+AGG - chr1_3:2325320-2325339 None:intergenic 40.0%
! AGCCGCAATTGCATTTTTCA+TGG - chr1_3:2325848-2325867 None:intergenic 40.0%
!! TTGATCAGTTGATGAGGGAT+GGG - chr1_3:2324712-2324731 None:intergenic 40.0%
!! TTTGATCAGTTGATGAGGGA+TGG - chr1_3:2324713-2324732 None:intergenic 40.0%
TGATGAAGAGGAAATCAGAG+AGG + chr1_3:2324900-2324919 Msa0096650:CDS 40.0%
GATGAAGAGGAAATCAGAGA+GGG + chr1_3:2324901-2324920 Msa0096650:CDS 40.0%
GAAGATGAAAAACCTCAGGT+TGG + chr1_3:2324967-2324986 Msa0096650:CDS 40.0%
CAAGAGTTATGCCCAATCTA+TGG + chr1_3:2325029-2325048 Msa0096650:CDS 40.0%
! TATGCCCAATCTATGGGTTT+TGG + chr1_3:2325036-2325055 Msa0096650:CDS 40.0%
TTTACTCTAGCATGTAGTCG+TGG + chr1_3:2325105-2325124 Msa0096650:CDS 40.0%
CTAAAATAGCGTGCTTTGTC+AGG - chr1_3:2325278-2325297 None:intergenic 40.0%
! TCTAACCTCCTTTTCAAACG+AGG - chr1_3:2325320-2325339 None:intergenic 40.0%
! AGCCGCAATTGCATTTTTCA+TGG - chr1_3:2325848-2325867 None:intergenic 40.0%
TGGATCCTCGTTTGAAAAGG+AGG + chr1_3:2325312-2325331 Msa0096650:three_prime_UTR 45.0%
AAAGTGAGGAGACTACGACT+TGG + chr1_3:2325455-2325474 Msa0096650:three_prime_UTR 45.0%
AAGTGAGGAGACTACGACTT+GGG + chr1_3:2325456-2325475 Msa0096650:three_prime_UTR 45.0%
! ATGCCTTTTGCCCCATTTGT+TGG + chr1_3:2325676-2325695 Msa0096650:three_prime_UTR 45.0%
ACTCCAACAAATGGGGCAAA+AGG - chr1_3:2325682-2325701 None:intergenic 45.0%
! ACAACACAGATTGGCCATGA+TGG - chr1_3:2325708-2325727 None:intergenic 45.0%
TCATGGCCAATCTGTGTTGT+TGG + chr1_3:2325708-2325727 Msa0096650:three_prime_UTR 45.0%
! CATGGCCAATCTGTGTTGTT+GGG + chr1_3:2325709-2325728 Msa0096650:three_prime_UTR 45.0%
! CTGTGCTTTATTGTCGAAGG+AGG + chr1_3:2325732-2325751 Msa0096650:three_prime_UTR 45.0%
GCATGCACTCTAACCATGTT+TGG - chr1_3:2325783-2325802 None:intergenic 45.0%
ACATGGTTAGAGTGCATGCA+TGG + chr1_3:2325784-2325803 Msa0096650:three_prime_UTR 45.0%
TGGATCCTCGTTTGAAAAGG+AGG + chr1_3:2325312-2325331 Msa0096650:three_prime_UTR 45.0%
AAAGTGAGGAGACTACGACT+TGG + chr1_3:2325455-2325474 Msa0096650:three_prime_UTR 45.0%
AAGTGAGGAGACTACGACTT+GGG + chr1_3:2325456-2325475 Msa0096650:three_prime_UTR 45.0%
! ATGCCTTTTGCCCCATTTGT+TGG + chr1_3:2325676-2325695 Msa0096650:three_prime_UTR 45.0%
ACTCCAACAAATGGGGCAAA+AGG - chr1_3:2325682-2325701 None:intergenic 45.0%
! ACAACACAGATTGGCCATGA+TGG - chr1_3:2325708-2325727 None:intergenic 45.0%
TCATGGCCAATCTGTGTTGT+TGG + chr1_3:2325708-2325727 Msa0096650:three_prime_UTR 45.0%
! CATGGCCAATCTGTGTTGTT+GGG + chr1_3:2325709-2325728 Msa0096650:three_prime_UTR 45.0%
! CTGTGCTTTATTGTCGAAGG+AGG + chr1_3:2325732-2325751 Msa0096650:three_prime_UTR 45.0%
GCATGCACTCTAACCATGTT+TGG - chr1_3:2325783-2325802 None:intergenic 45.0%
ACATGGTTAGAGTGCATGCA+TGG + chr1_3:2325784-2325803 Msa0096650:three_prime_UTR 45.0%
AGTGAGGAGACTACGACTTG+GGG + chr1_3:2325457-2325476 Msa0096650:three_prime_UTR 50.0%
TTTGGGCAGATGCGAGATGT+AGG + chr1_3:2325587-2325606 Msa0096650:three_prime_UTR 50.0%
TTGGGCAGATGCGAGATGTA+GGG + chr1_3:2325588-2325607 Msa0096650:three_prime_UTR 50.0%
CACAGCCCAACAACACAGAT+TGG - chr1_3:2325717-2325736 None:intergenic 50.0%
! GGGCTGTGCTTTATTGTCGA+AGG + chr1_3:2325729-2325748 Msa0096650:three_prime_UTR 50.0%
AGTGAGGAGACTACGACTTG+GGG + chr1_3:2325457-2325476 Msa0096650:three_prime_UTR 50.0%
TTTGGGCAGATGCGAGATGT+AGG + chr1_3:2325587-2325606 Msa0096650:three_prime_UTR 50.0%
TTGGGCAGATGCGAGATGTA+GGG + chr1_3:2325588-2325607 Msa0096650:three_prime_UTR 50.0%
CACAGCCCAACAACACAGAT+TGG - chr1_3:2325717-2325736 None:intergenic 50.0%
! GGGCTGTGCTTTATTGTCGA+AGG + chr1_3:2325729-2325748 Msa0096650:three_prime_UTR 50.0%
! AGGAGACTACGACTTGGGGC+TGG + chr1_3:2325461-2325480 Msa0096650:three_prime_UTR 60.0%
ACTTGGGGCTGGAGATGCTG+AGG + chr1_3:2325472-2325491 Msa0096650:three_prime_UTR 60.0%
! AGGAGACTACGACTTGGGGC+TGG + chr1_3:2325461-2325480 Msa0096650:three_prime_UTR 60.0%
ACTTGGGGCTGGAGATGCTG+AGG + chr1_3:2325472-2325491 Msa0096650:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 2324657 2325940 2324657 ID=Msa0096650;Name=Msa0096650
chr1_3 mRNA 2324657 2325940 2324657 ID=Msa0096650-mRNA-1;Parent=Msa0096650;Name=Msa0096650-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|1|0.5|1|1|1|2|719|121
chr1_3 exon 2324657 2324678 2324657 ID=Msa0096650-mRNA-1:exon:575;Parent=Msa0096650-mRNA-1
chr1_3 exon 2324878 2325940 2324878 ID=Msa0096650-mRNA-1:exon:576;Parent=Msa0096650-mRNA-1
chr1_3 CDS 2324657 2324678 2324657 ID=Msa0096650-mRNA-1:cds;Parent=Msa0096650-mRNA-1
chr1_3 CDS 2324878 2325221 2324878 ID=Msa0096650-mRNA-1:cds;Parent=Msa0096650-mRNA-1
chr1_3 three_prime_UTR 2325222 2325940 2325222 ID=Msa0096650-mRNA-1:three_prime_utr;Parent=Msa0096650-mRNA-1
Gene Sequence

>Msa0096650

ATGGAAACAGTGCAAAAATCAATGGAAGAAGTATTTGTATCTTCTGATGAAGAGGAAATCAGAGAGGGAAATAATAATTTTGATGATAGTTTAGAAGAAGATATTGTTCATGAAGATGAAAAACCTCAGGTTGGAACTATATTTAGCTCTAAAGATGAACTTTTTGAGTATTACAAGAGTTATGCCCAATCTATGGGTTTTGGAGTTACTAAACTTAGTAACAAAAATACAGATGATGGGAAAAAATACTTTACTCTAGCATGTAGTCGTGGATCAAAGTATGTGAGTAAGGCGAAGAAGCTTTTGAACCCAAATCCTTTAACAAAAACTCAGTGCAAGGCTAGATTGAATGCATGTATTTCTTAG
Protein sequence

>Msa0096650

METVQKSMEEVFVSSDEEEIREGNNNFDDSLEEDIVHEDEKPQVGTIFSSKDELFEYYKSYAQSMGFGVTKLSNKNTDDGKKYFTLACSRGSKYVSKAKKLLNPNPLTKTQCKARLNACIS*