Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0096720 | MCH82909.1 | 73.538 | 325 | 85 | 1 | 26 | 350 | 4 | 327 | 0.0 | 523 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0096720 | sp|Q9SWG3|FAR1_ARATH | 35.238 | 315 | 183 | 6 | 47 | 348 | 48 | 354 | 1.74e-58 | 206 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0096720 | A0A392M6P6 | 73.538 | 325 | 85 | 1 | 26 | 350 | 4 | 327 | 0.0 | 523 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0096720 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0096720 | MtrunA17_Chr2g0296781 | 78.305 | 295 | 64 | 0 | 56 | 350 | 3 | 297 | 3.61e-177 | 509 |
| Msa0096720 | MtrunA17_Chr1g0196541 | 60.678 | 295 | 116 | 0 | 56 | 350 | 3 | 297 | 1.99e-134 | 400 |
| Msa0096720 | MtrunA17_Chr6g0477261 | 85.326 | 184 | 27 | 0 | 165 | 348 | 1 | 184 | 1.42e-115 | 350 |
| Msa0096720 | MtrunA17_Chr5g0441581 | 47.649 | 319 | 151 | 5 | 36 | 348 | 15 | 323 | 1.43e-91 | 288 |
| Msa0096720 | MtrunA17_Chr2g0291591 | 36.697 | 327 | 200 | 4 | 26 | 348 | 39 | 362 | 3.85e-68 | 224 |
| Msa0096720 | MtrunA17_Chr2g0329031 | 38.538 | 301 | 164 | 5 | 56 | 348 | 20 | 307 | 9.67e-64 | 216 |
| Msa0096720 | MtrunA17_Chr5g0448761 | 37.460 | 315 | 182 | 9 | 47 | 348 | 57 | 369 | 1.19e-59 | 205 |
| Msa0096720 | MtrunA17_Chr1g0207551 | 35.256 | 312 | 184 | 4 | 47 | 348 | 31 | 334 | 3.28e-59 | 204 |
| Msa0096720 | MtrunA17_Chr2g0291581 | 36.304 | 303 | 181 | 5 | 50 | 351 | 71 | 362 | 1.30e-58 | 201 |
| Msa0096720 | MtrunA17_Chr1g0202341 | 37.419 | 310 | 178 | 6 | 49 | 348 | 50 | 353 | 1.53e-58 | 201 |
| Msa0096720 | MtrunA17_Chr3g0080351 | 34.069 | 317 | 169 | 5 | 49 | 348 | 75 | 368 | 7.11e-54 | 190 |
| Msa0096720 | MtrunA17_Chr8g0363841 | 35.048 | 311 | 194 | 4 | 46 | 348 | 10 | 320 | 1.06e-51 | 182 |
| Msa0096720 | MtrunA17_Chr5g0440451 | 33.742 | 326 | 177 | 9 | 49 | 350 | 42 | 352 | 4.17e-49 | 177 |
| Msa0096720 | MtrunA17_Chr2g0324011 | 32.258 | 310 | 202 | 5 | 47 | 350 | 7 | 314 | 5.45e-47 | 168 |
| Msa0096720 | MtrunA17_Chr2g0287651 | 32.573 | 307 | 186 | 6 | 56 | 348 | 81 | 380 | 3.86e-46 | 168 |
| Msa0096720 | MtrunA17_Chr7g0258861 | 32.168 | 286 | 181 | 5 | 47 | 322 | 7 | 289 | 8.60e-44 | 153 |
| Msa0096720 | MtrunA17_Chr3g0082121 | 33.428 | 353 | 211 | 11 | 9 | 350 | 1 | 340 | 6.09e-43 | 158 |
| Msa0096720 | MtrunA17_Chr2g0287061 | 32.471 | 348 | 188 | 11 | 10 | 348 | 141 | 450 | 7.48e-43 | 158 |
| Msa0096720 | MtrunA17_Chr1g0203721 | 32.484 | 314 | 189 | 7 | 52 | 350 | 65 | 370 | 4.43e-41 | 154 |
| Msa0096720 | MtrunA17_Chr3g0118611 | 50.365 | 137 | 68 | 0 | 214 | 350 | 113 | 249 | 7.42e-41 | 152 |
| Msa0096720 | MtrunA17_Chr1g0198761 | 30.769 | 312 | 193 | 8 | 53 | 345 | 50 | 357 | 3.27e-39 | 148 |
| Msa0096720 | MtrunA17_Chr6g0458391 | 30.887 | 327 | 195 | 9 | 34 | 350 | 207 | 512 | 5.01e-39 | 147 |
| Msa0096720 | MtrunA17_Chr1g0203051 | 29.605 | 304 | 201 | 7 | 56 | 350 | 85 | 384 | 7.67e-39 | 146 |
| Msa0096720 | MtrunA17_Chr5g0448511 | 45.070 | 142 | 77 | 1 | 207 | 348 | 1 | 141 | 2.30e-38 | 144 |
| Msa0096720 | MtrunA17_Chr2g0276841 | 28.025 | 314 | 202 | 8 | 50 | 346 | 70 | 376 | 7.20e-37 | 141 |
| Msa0096720 | MtrunA17_Chr1g0164591 | 36.596 | 235 | 122 | 6 | 128 | 351 | 3 | 221 | 6.43e-36 | 133 |
| Msa0096720 | MtrunA17_Chr5g0431001 | 30.189 | 318 | 195 | 9 | 50 | 346 | 61 | 372 | 5.57e-35 | 134 |
| Msa0096720 | MtrunA17_Chr6g0476431 | 62.791 | 86 | 32 | 0 | 56 | 141 | 3 | 88 | 7.93e-34 | 120 |
| Msa0096720 | MtrunA17_Chr2g0294841 | 27.974 | 311 | 209 | 6 | 50 | 346 | 45 | 354 | 2.84e-31 | 125 |
| Msa0096720 | MtrunA17_Chr2g0290391 | 25.970 | 335 | 216 | 11 | 37 | 348 | 42 | 367 | 3.20e-26 | 110 |
| Msa0096720 | MtrunA17_Chr6g0451441 | 32.500 | 200 | 125 | 5 | 18 | 211 | 52 | 247 | 9.10e-23 | 99.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0096720 | AT4G15090.1 | 35.238 | 315 | 183 | 6 | 47 | 348 | 48 | 354 | 1.77e-59 | 206 |
| Msa0096720 | AT4G15090.5 | 35.238 | 315 | 183 | 6 | 47 | 348 | 48 | 354 | 1.77e-59 | 206 |
| Msa0096720 | AT4G15090.3 | 35.238 | 315 | 183 | 6 | 47 | 348 | 48 | 354 | 1.77e-59 | 206 |
| Msa0096720 | AT4G15090.2 | 35.238 | 315 | 183 | 6 | 47 | 348 | 48 | 354 | 1.77e-59 | 206 |
| Msa0096720 | AT4G15090.4 | 35.238 | 315 | 183 | 6 | 47 | 348 | 48 | 354 | 1.77e-59 | 206 |
| Msa0096720 | AT1G76320.3 | 36.986 | 292 | 158 | 6 | 56 | 336 | 3 | 279 | 6.62e-58 | 199 |
| Msa0096720 | AT1G76320.2 | 36.986 | 292 | 158 | 6 | 56 | 336 | 3 | 279 | 1.05e-57 | 199 |
| Msa0096720 | AT1G76320.1 | 36.986 | 292 | 158 | 6 | 56 | 336 | 3 | 279 | 1.27e-57 | 199 |
| Msa0096720 | AT1G76320.4 | 36.986 | 292 | 158 | 6 | 56 | 336 | 3 | 279 | 1.27e-57 | 199 |
| Msa0096720 | AT4G38180.1 | 33.538 | 325 | 205 | 6 | 33 | 348 | 56 | 378 | 3.24e-54 | 191 |
| Msa0096720 | AT1G80010.1 | 33.333 | 312 | 193 | 7 | 50 | 350 | 95 | 402 | 9.22e-52 | 183 |
| Msa0096720 | AT3G22170.2 | 30.915 | 317 | 180 | 4 | 49 | 348 | 69 | 363 | 1.09e-48 | 176 |
| Msa0096720 | AT3G22170.1 | 30.915 | 317 | 180 | 4 | 49 | 348 | 69 | 363 | 1.09e-48 | 176 |
| Msa0096720 | AT1G52520.1 | 32.676 | 355 | 206 | 10 | 17 | 351 | 37 | 378 | 1.61e-47 | 171 |
| Msa0096720 | AT2G27110.2 | 34.056 | 323 | 181 | 6 | 31 | 348 | 30 | 325 | 4.68e-47 | 171 |
| Msa0096720 | AT2G27110.1 | 34.056 | 323 | 181 | 6 | 31 | 348 | 30 | 325 | 4.68e-47 | 171 |
| Msa0096720 | AT4G19990.3 | 35.669 | 314 | 149 | 10 | 53 | 348 | 24 | 302 | 6.13e-44 | 162 |
| Msa0096720 | AT4G19990.4 | 35.669 | 314 | 149 | 10 | 53 | 348 | 24 | 302 | 6.13e-44 | 162 |
| Msa0096720 | AT4G19990.7 | 35.669 | 314 | 149 | 10 | 53 | 348 | 38 | 316 | 7.56e-44 | 161 |
| Msa0096720 | AT4G19990.5 | 35.669 | 314 | 149 | 10 | 53 | 348 | 24 | 302 | 9.03e-44 | 161 |
| Msa0096720 | AT4G19990.6 | 35.669 | 314 | 149 | 10 | 53 | 348 | 24 | 302 | 9.94e-44 | 161 |
| Msa0096720 | AT4G19990.2 | 35.669 | 314 | 149 | 10 | 53 | 348 | 24 | 302 | 9.94e-44 | 161 |
| Msa0096720 | AT2G27110.3 | 41.143 | 175 | 95 | 1 | 174 | 348 | 14 | 180 | 7.74e-42 | 155 |
| Msa0096720 | AT5G18960.2 | 31.353 | 303 | 171 | 8 | 49 | 348 | 210 | 478 | 1.40e-41 | 155 |
| Msa0096720 | AT5G18960.1 | 31.353 | 303 | 171 | 8 | 49 | 348 | 210 | 478 | 1.40e-41 | 155 |
| Msa0096720 | AT3G06250.2 | 31.353 | 303 | 168 | 8 | 49 | 348 | 189 | 454 | 6.03e-41 | 153 |
| Msa0096720 | AT3G06250.1 | 31.353 | 303 | 168 | 8 | 49 | 348 | 189 | 454 | 6.03e-41 | 153 |
| Msa0096720 | AT3G06250.3 | 31.353 | 303 | 168 | 8 | 49 | 348 | 189 | 454 | 6.03e-41 | 153 |
| Msa0096720 | AT4G19990.1 | 36.752 | 234 | 112 | 5 | 116 | 348 | 47 | 245 | 2.39e-37 | 142 |
| Msa0096720 | AT1G10240.2 | 28.875 | 329 | 207 | 11 | 36 | 346 | 35 | 354 | 3.91e-37 | 142 |
| Msa0096720 | AT1G10240.1 | 28.875 | 329 | 207 | 11 | 36 | 346 | 35 | 354 | 3.91e-37 | 142 |
| Msa0096720 | AT2G32250.5 | 47.154 | 123 | 65 | 0 | 226 | 348 | 176 | 298 | 8.83e-37 | 141 |
| Msa0096720 | AT2G32250.2 | 47.154 | 123 | 65 | 0 | 226 | 348 | 176 | 298 | 9.10e-37 | 141 |
| Msa0096720 | AT2G32250.4 | 47.154 | 123 | 65 | 0 | 226 | 348 | 176 | 298 | 9.10e-37 | 141 |
| Msa0096720 | AT2G32250.6 | 47.154 | 123 | 65 | 0 | 226 | 348 | 176 | 298 | 9.39e-37 | 141 |
| Msa0096720 | AT2G32250.1 | 47.154 | 123 | 65 | 0 | 226 | 348 | 176 | 298 | 9.39e-37 | 141 |
| Msa0096720 | AT2G32250.3 | 47.154 | 123 | 65 | 0 | 226 | 348 | 176 | 298 | 9.39e-37 | 141 |
| Msa0096720 | AT2G32250.7 | 47.154 | 123 | 65 | 0 | 226 | 348 | 135 | 257 | 1.00e-36 | 141 |
| Msa0096720 | AT2G32250.8 | 47.154 | 123 | 65 | 0 | 226 | 348 | 135 | 257 | 1.01e-36 | 141 |
| Msa0096720 | AT4G38170.1 | 44.295 | 149 | 71 | 3 | 221 | 361 | 19 | 163 | 6.07e-35 | 134 |
| Msa0096720 | AT5G28530.1 | 27.950 | 322 | 198 | 7 | 50 | 345 | 55 | 368 | 8.28e-34 | 132 |
| Msa0096720 | AT5G28530.3 | 27.950 | 322 | 198 | 7 | 50 | 345 | 55 | 368 | 8.99e-34 | 132 |
| Msa0096720 | AT5G28530.2 | 27.950 | 322 | 198 | 7 | 50 | 345 | 55 | 368 | 8.99e-34 | 132 |
Find 49 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGAGTTATGCCCAATCTA+TGG | 0.242427 | 1_3:+2391348 | Msa0096720:CDS |
| AATGCATGTATTTCTTTAGA+TGG | 0.249459 | 1_3:+2391523 | Msa0096720:CDS |
| TTCCATTACAACTTGACTTC+TGG | 0.260025 | 1_3:-2390958 | None:intergenic |
| CTAAAATAGCGTGCTTTGTC+AGG | 0.272247 | 1_3:-2391595 | None:intergenic |
| TATGCCCAATCTATGGGTTT+TGG | 0.292447 | 1_3:+2391355 | Msa0096720:CDS |
| AGGGCTGCATATGAATATTT+TGG | 0.330794 | 1_3:+2391928 | Msa0096720:CDS |
| TGATCGGTAATTATGGCATT+TGG | 0.337887 | 1_3:-2392135 | None:intergenic |
| GCATGCACTCTAACCATGTT+TGG | 0.393751 | 1_3:-2392101 | None:intergenic |
| TAACTCCAAAACCCATAGAT+TGG | 0.409903 | 1_3:-2391360 | None:intergenic |
| AAGTGAGGAGACTACGACTT+GGG | 0.414907 | 1_3:+2391776 | Msa0096720:CDS |
| TCATGGCCAATCTGTGTTGT+TGG | 0.420636 | 1_3:+2392029 | Msa0096720:CDS |
| TGATGGTTTACTCCAACAAA+TGG | 0.425908 | 1_3:-2392009 | None:intergenic |
| TCTGTCTTGATCGGTAATTA+TGG | 0.452701 | 1_3:-2392142 | None:intergenic |
| AACTCCAAAACCCATAGATT+GGG | 0.455626 | 1_3:-2391359 | None:intergenic |
| GATGGTTTACTCCAACAAAT+GGG | 0.455733 | 1_3:-2392008 | None:intergenic |
| GAATATGACATTTGGTGAAA+AGG | 0.456326 | 1_3:+2391732 | Msa0096720:CDS |
| CATGGCCAATCTGTGTTGTT+GGG | 0.456597 | 1_3:+2392030 | Msa0096720:CDS |
| TTCCAGAAGTCAAGTTGTAA+TGG | 0.460231 | 1_3:+2390956 | Msa0096720:CDS |
| ACTCCAACAAATGGGGCAAA+AGG | 0.479062 | 1_3:-2392000 | None:intergenic |
| GGTTATGAGAATATGACATT+TGG | 0.482364 | 1_3:+2391724 | Msa0096720:CDS |
| TTTGGGCAGATGCGAGATGT+AGG | 0.485083 | 1_3:+2391908 | Msa0096720:CDS |
| AGGATACTAAGTCCTTTACT+TGG | 0.489445 | 1_3:+2392073 | Msa0096720:CDS |
| TCAATGGTTGTTGAAGCAAA+TGG | 0.495114 | 1_3:+2391703 | Msa0096720:CDS |
| TGGATCAAAGTATGTGAGTA+AGG | 0.495275 | 1_3:+2391444 | Msa0096720:CDS |
| AAGAGTTATGCCCAATCTAT+GGG | 0.502102 | 1_3:+2391349 | Msa0096720:CDS |
| ACAACACAGATTGGCCATGA+TGG | 0.504337 | 1_3:-2392026 | None:intergenic |
| TTTCATGGATCTGTCTTGAT+CGG | 0.508760 | 1_3:-2392151 | None:intergenic |
| TTGGGCAGATGCGAGATGTA+GGG | 0.512318 | 1_3:+2391909 | Msa0096720:CDS |
| AGGAGACTACGACTTGGGGC+TGG | 0.514634 | 1_3:+2391781 | Msa0096720:CDS |
| ATTTGTATCTTCTGATGAAG+AGG | 0.520293 | 1_3:+2391207 | Msa0096720:CDS |
| TGGATCCTCGTTTGAAAAGG+AGG | 0.528466 | 1_3:+2391632 | Msa0096720:CDS |
| CACAGCCCAACAACACAGAT+TGG | 0.536074 | 1_3:-2392035 | None:intergenic |
| GGGCTGTGCTTTATTGTCGA+AGG | 0.551617 | 1_3:+2392050 | Msa0096720:CDS |
| TTTGTTGGAGTAAACCATCA+TGG | 0.557125 | 1_3:+2392012 | Msa0096720:CDS |
| TAAAATAGCGTGCTTTGTCA+GGG | 0.562727 | 1_3:-2391594 | None:intergenic |
| TTAGAACTCAATGATCAAGC+TGG | 0.567016 | 1_3:+2391655 | Msa0096720:CDS |
| ACATGGTTAGAGTGCATGCA+TGG | 0.583025 | 1_3:+2392105 | Msa0096720:CDS |
| TTACTTGGTTATTCCAAACA+TGG | 0.586529 | 1_3:+2392088 | Msa0096720:CDS |
| CTGTGCTTTATTGTCGAAGG+AGG | 0.593919 | 1_3:+2392053 | Msa0096720:CDS |
| TGTTTGGAATAACCAAGTAA+AGG | 0.602120 | 1_3:-2392085 | None:intergenic |
| GATGAAGAGGAAATCAGAGA+GGG | 0.625109 | 1_3:+2391220 | Msa0096720:CDS |
| AGTGAGGAGACTACGACTTG+GGG | 0.641932 | 1_3:+2391777 | Msa0096720:CDS |
| CTAAATATAGTTCCAACCTG+AGG | 0.648571 | 1_3:-2391298 | None:intergenic |
| AAAGTGAGGAGACTACGACT+TGG | 0.649574 | 1_3:+2391775 | Msa0096720:CDS |
| GAAACTATATAGATAAAGTG+AGG | 0.649765 | 1_3:+2391761 | Msa0096720:CDS |
| ACTTGGGGCTGGAGATGCTG+AGG | 0.650883 | 1_3:+2391792 | Msa0096720:CDS |
| ATGGTTTACTCCAACAAATG+GGG | 0.652441 | 1_3:-2392007 | None:intergenic |
| TTTACTCTAGCATGTAGTCG+TGG | 0.653028 | 1_3:+2391424 | Msa0096720:CDS |
| TGATGAAGAGGAAATCAGAG+AGG | 0.679814 | 1_3:+2391219 | Msa0096720:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTAATTTATTGCATTAG+TGG | + | chr1_3:2391177-2391196 | Msa0096720:intron | 15.0% |
| !!! | TTTTTAATTTATTGCATTAG+TGG | + | chr1_3:2391177-2391196 | Msa0096720:intron | 15.0% |
| !!! | TTTTGATATTGAAACTGATT+TGG | + | chr1_3:2391078-2391097 | Msa0096720:intron | 20.0% |
| !! | TAAGCATTAAATACAAATCT+AGG | - | chr1_3:2391109-2391128 | None:intergenic | 20.0% |
| !!! | TTTTAGAAGTAGTAAGTTTT+TGG | + | chr1_3:2391612-2391631 | Msa0096720:CDS | 20.0% |
| !!! | TTTTGATATTGAAACTGATT+TGG | + | chr1_3:2391078-2391097 | Msa0096720:intron | 20.0% |
| !! | TAAGCATTAAATACAAATCT+AGG | - | chr1_3:2391109-2391128 | None:intergenic | 20.0% |
| !!! | TTTTAGAAGTAGTAAGTTTT+TGG | + | chr1_3:2391612-2391631 | Msa0096720:CDS | 20.0% |
| ! | TAAGTTAACGACCTTAAATT+GGG | + | chr1_3:2390998-2391017 | Msa0096720:intron | 25.0% |
| ! | AGTAACAAAAATACAGATGA+TGG | + | chr1_3:2391391-2391410 | Msa0096720:CDS | 25.0% |
| ! | GTAACAAAAATACAGATGAT+GGG | + | chr1_3:2391392-2391411 | Msa0096720:CDS | 25.0% |
| !! | GAGTTTTTGTTAAAGGATTT+GGG | - | chr1_3:2391486-2391505 | None:intergenic | 25.0% |
| !! | TGAGTTTTTGTTAAAGGATT+TGG | - | chr1_3:2391487-2391506 | None:intergenic | 25.0% |
| ! | AATGCATGTATTTCTTTAGA+TGG | + | chr1_3:2391523-2391542 | Msa0096720:CDS | 25.0% |
| ! | GAAACTATATAGATAAAGTG+AGG | + | chr1_3:2391761-2391780 | Msa0096720:CDS | 25.0% |
| ! | TAAGTTAACGACCTTAAATT+GGG | + | chr1_3:2390998-2391017 | Msa0096720:intron | 25.0% |
| ! | AGTAACAAAAATACAGATGA+TGG | + | chr1_3:2391391-2391410 | Msa0096720:CDS | 25.0% |
| ! | GTAACAAAAATACAGATGAT+GGG | + | chr1_3:2391392-2391411 | Msa0096720:CDS | 25.0% |
| !! | GAGTTTTTGTTAAAGGATTT+GGG | - | chr1_3:2391486-2391505 | None:intergenic | 25.0% |
| !! | TGAGTTTTTGTTAAAGGATT+TGG | - | chr1_3:2391487-2391506 | None:intergenic | 25.0% |
| ! | AATGCATGTATTTCTTTAGA+TGG | + | chr1_3:2391523-2391542 | Msa0096720:CDS | 25.0% |
| ! | GAAACTATATAGATAAAGTG+AGG | + | chr1_3:2391761-2391780 | Msa0096720:CDS | 25.0% |
| GTAAGTTAACGACCTTAAAT+TGG | + | chr1_3:2390997-2391016 | Msa0096720:intron | 30.0% | |
| !! | ATAGTTTGATCAGTTGATGA+GGG | - | chr1_3:2391035-2391054 | None:intergenic | 30.0% |
| ATTTGTATCTTCTGATGAAG+AGG | + | chr1_3:2391207-2391226 | Msa0096720:CDS | 30.0% | |
| ! | TTGCACTGAGTTTTTGTTAA+AGG | - | chr1_3:2391493-2391512 | None:intergenic | 30.0% |
| TTTAACAAAAACTCAGTGCA+AGG | + | chr1_3:2391492-2391511 | Msa0096720:CDS | 30.0% | |
| ! | AAGCAGAAATTTTCGATCAA+TGG | + | chr1_3:2391687-2391706 | Msa0096720:CDS | 30.0% |
| GGTTATGAGAATATGACATT+TGG | + | chr1_3:2391724-2391743 | Msa0096720:CDS | 30.0% | |
| ! | GAATATGACATTTGGTGAAA+AGG | + | chr1_3:2391732-2391751 | Msa0096720:CDS | 30.0% |
| !!! | TCGCTTACGAAATGTTTTTT+GGG | + | chr1_3:2391891-2391910 | Msa0096720:CDS | 30.0% |
| ! | TGTTTGGAATAACCAAGTAA+AGG | - | chr1_3:2392088-2392107 | None:intergenic | 30.0% |
| TTACTTGGTTATTCCAAACA+TGG | + | chr1_3:2392088-2392107 | Msa0096720:CDS | 30.0% | |
| ATCCATGAAAAATGCAATTG+CGG | + | chr1_3:2392164-2392183 | Msa0096720:CDS | 30.0% | |
| GTAAGTTAACGACCTTAAAT+TGG | + | chr1_3:2390997-2391016 | Msa0096720:intron | 30.0% | |
| !! | ATAGTTTGATCAGTTGATGA+GGG | - | chr1_3:2391035-2391054 | None:intergenic | 30.0% |
| ATTTGTATCTTCTGATGAAG+AGG | + | chr1_3:2391207-2391226 | Msa0096720:CDS | 30.0% | |
| ! | TTGCACTGAGTTTTTGTTAA+AGG | - | chr1_3:2391493-2391512 | None:intergenic | 30.0% |
| TTTAACAAAAACTCAGTGCA+AGG | + | chr1_3:2391492-2391511 | Msa0096720:CDS | 30.0% | |
| ! | AAGCAGAAATTTTCGATCAA+TGG | + | chr1_3:2391687-2391706 | Msa0096720:CDS | 30.0% |
| GGTTATGAGAATATGACATT+TGG | + | chr1_3:2391724-2391743 | Msa0096720:CDS | 30.0% | |
| ! | GAATATGACATTTGGTGAAA+AGG | + | chr1_3:2391732-2391751 | Msa0096720:CDS | 30.0% |
| !!! | TCGCTTACGAAATGTTTTTT+GGG | + | chr1_3:2391891-2391910 | Msa0096720:CDS | 30.0% |
| ! | TGTTTGGAATAACCAAGTAA+AGG | - | chr1_3:2392088-2392107 | None:intergenic | 30.0% |
| TTACTTGGTTATTCCAAACA+TGG | + | chr1_3:2392088-2392107 | Msa0096720:CDS | 30.0% | |
| ATCCATGAAAAATGCAATTG+CGG | + | chr1_3:2392164-2392183 | Msa0096720:CDS | 30.0% | |
| ! | TTCCAGAAGTCAAGTTGTAA+TGG | + | chr1_3:2390956-2390975 | Msa0096720:CDS | 35.0% |
| TTCCATTACAACTTGACTTC+TGG | - | chr1_3:2390961-2390980 | None:intergenic | 35.0% | |
| ATGGGTGATAACCCAATTTA+AGG | - | chr1_3:2391012-2391031 | None:intergenic | 35.0% | |
| ! | CATAGTTTGATCAGTTGATG+AGG | - | chr1_3:2391036-2391055 | None:intergenic | 35.0% |
| TCATGAAGATGAAAAACCTC+AGG | + | chr1_3:2391282-2391301 | Msa0096720:CDS | 35.0% | |
| CTAAATATAGTTCCAACCTG+AGG | - | chr1_3:2391301-2391320 | None:intergenic | 35.0% | |
| AAGAGTTATGCCCAATCTAT+GGG | + | chr1_3:2391349-2391368 | Msa0096720:CDS | 35.0% | |
| AACTCCAAAACCCATAGATT+GGG | - | chr1_3:2391362-2391381 | None:intergenic | 35.0% | |
| TAACTCCAAAACCCATAGAT+TGG | - | chr1_3:2391363-2391382 | None:intergenic | 35.0% | |
| TGGATCAAAGTATGTGAGTA+AGG | + | chr1_3:2391444-2391463 | Msa0096720:CDS | 35.0% | |
| TAAAATAGCGTGCTTTGTCA+GGG | - | chr1_3:2391597-2391616 | None:intergenic | 35.0% | |
| ! | TTTTGGATCCTCGTTTGAAA+AGG | + | chr1_3:2391629-2391648 | Msa0096720:CDS | 35.0% |
| TTAGAACTCAATGATCAAGC+TGG | + | chr1_3:2391655-2391674 | Msa0096720:CDS | 35.0% | |
| TCAATGGTTGTTGAAGCAAA+TGG | + | chr1_3:2391703-2391722 | Msa0096720:CDS | 35.0% | |
| !!! | GTCGCTTACGAAATGTTTTT+TGG | + | chr1_3:2391890-2391909 | Msa0096720:CDS | 35.0% |
| ! | AGGGCTGCATATGAATATTT+TGG | + | chr1_3:2391928-2391947 | Msa0096720:CDS | 35.0% |
| ATGGTTTACTCCAACAAATG+GGG | - | chr1_3:2392010-2392029 | None:intergenic | 35.0% | |
| GATGGTTTACTCCAACAAAT+GGG | - | chr1_3:2392011-2392030 | None:intergenic | 35.0% | |
| TGATGGTTTACTCCAACAAA+TGG | - | chr1_3:2392012-2392031 | None:intergenic | 35.0% | |
| TTTGTTGGAGTAAACCATCA+TGG | + | chr1_3:2392012-2392031 | Msa0096720:CDS | 35.0% | |
| AGGATACTAAGTCCTTTACT+TGG | + | chr1_3:2392073-2392092 | Msa0096720:CDS | 35.0% | |
| TGATCGGTAATTATGGCATT+TGG | - | chr1_3:2392138-2392157 | None:intergenic | 35.0% | |
| TCTGTCTTGATCGGTAATTA+TGG | - | chr1_3:2392145-2392164 | None:intergenic | 35.0% | |
| TTTCATGGATCTGTCTTGAT+CGG | - | chr1_3:2392154-2392173 | None:intergenic | 35.0% | |
| ! | TTCCAGAAGTCAAGTTGTAA+TGG | + | chr1_3:2390956-2390975 | Msa0096720:CDS | 35.0% |
| TTCCATTACAACTTGACTTC+TGG | - | chr1_3:2390961-2390980 | None:intergenic | 35.0% | |
| ATGGGTGATAACCCAATTTA+AGG | - | chr1_3:2391012-2391031 | None:intergenic | 35.0% | |
| ! | CATAGTTTGATCAGTTGATG+AGG | - | chr1_3:2391036-2391055 | None:intergenic | 35.0% |
| TCATGAAGATGAAAAACCTC+AGG | + | chr1_3:2391282-2391301 | Msa0096720:CDS | 35.0% | |
| CTAAATATAGTTCCAACCTG+AGG | - | chr1_3:2391301-2391320 | None:intergenic | 35.0% | |
| AAGAGTTATGCCCAATCTAT+GGG | + | chr1_3:2391349-2391368 | Msa0096720:CDS | 35.0% | |
| AACTCCAAAACCCATAGATT+GGG | - | chr1_3:2391362-2391381 | None:intergenic | 35.0% | |
| TAACTCCAAAACCCATAGAT+TGG | - | chr1_3:2391363-2391382 | None:intergenic | 35.0% | |
| TGGATCAAAGTATGTGAGTA+AGG | + | chr1_3:2391444-2391463 | Msa0096720:CDS | 35.0% | |
| TAAAATAGCGTGCTTTGTCA+GGG | - | chr1_3:2391597-2391616 | None:intergenic | 35.0% | |
| ! | TTTTGGATCCTCGTTTGAAA+AGG | + | chr1_3:2391629-2391648 | Msa0096720:CDS | 35.0% |
| TTAGAACTCAATGATCAAGC+TGG | + | chr1_3:2391655-2391674 | Msa0096720:CDS | 35.0% | |
| TCAATGGTTGTTGAAGCAAA+TGG | + | chr1_3:2391703-2391722 | Msa0096720:CDS | 35.0% | |
| !!! | GTCGCTTACGAAATGTTTTT+TGG | + | chr1_3:2391890-2391909 | Msa0096720:CDS | 35.0% |
| ! | AGGGCTGCATATGAATATTT+TGG | + | chr1_3:2391928-2391947 | Msa0096720:CDS | 35.0% |
| ATGGTTTACTCCAACAAATG+GGG | - | chr1_3:2392010-2392029 | None:intergenic | 35.0% | |
| GATGGTTTACTCCAACAAAT+GGG | - | chr1_3:2392011-2392030 | None:intergenic | 35.0% | |
| TGATGGTTTACTCCAACAAA+TGG | - | chr1_3:2392012-2392031 | None:intergenic | 35.0% | |
| TTTGTTGGAGTAAACCATCA+TGG | + | chr1_3:2392012-2392031 | Msa0096720:CDS | 35.0% | |
| AGGATACTAAGTCCTTTACT+TGG | + | chr1_3:2392073-2392092 | Msa0096720:CDS | 35.0% | |
| TGATCGGTAATTATGGCATT+TGG | - | chr1_3:2392138-2392157 | None:intergenic | 35.0% | |
| TCTGTCTTGATCGGTAATTA+TGG | - | chr1_3:2392145-2392164 | None:intergenic | 35.0% | |
| TTTCATGGATCTGTCTTGAT+CGG | - | chr1_3:2392154-2392173 | None:intergenic | 35.0% | |
| !! | TTGATCAGTTGATGAGGGAT+GGG | - | chr1_3:2391030-2391049 | None:intergenic | 40.0% |
| !! | TTTGATCAGTTGATGAGGGA+TGG | - | chr1_3:2391031-2391050 | None:intergenic | 40.0% |
| TGATGAAGAGGAAATCAGAG+AGG | + | chr1_3:2391219-2391238 | Msa0096720:CDS | 40.0% | |
| GATGAAGAGGAAATCAGAGA+GGG | + | chr1_3:2391220-2391239 | Msa0096720:CDS | 40.0% | |
| GAAGATGAAAAACCTCAGGT+TGG | + | chr1_3:2391286-2391305 | Msa0096720:CDS | 40.0% | |
| CAAGAGTTATGCCCAATCTA+TGG | + | chr1_3:2391348-2391367 | Msa0096720:CDS | 40.0% | |
| ! | TATGCCCAATCTATGGGTTT+TGG | + | chr1_3:2391355-2391374 | Msa0096720:CDS | 40.0% |
| TTTACTCTAGCATGTAGTCG+TGG | + | chr1_3:2391424-2391443 | Msa0096720:CDS | 40.0% | |
| CTAAAATAGCGTGCTTTGTC+AGG | - | chr1_3:2391598-2391617 | None:intergenic | 40.0% | |
| ! | TCTAACCTCCTTTTCAAACG+AGG | - | chr1_3:2391640-2391659 | None:intergenic | 40.0% |
| ! | AGCCGCAATTGCATTTTTCA+TGG | - | chr1_3:2392169-2392188 | None:intergenic | 40.0% |
| !! | TTGATCAGTTGATGAGGGAT+GGG | - | chr1_3:2391030-2391049 | None:intergenic | 40.0% |
| !! | TTTGATCAGTTGATGAGGGA+TGG | - | chr1_3:2391031-2391050 | None:intergenic | 40.0% |
| TGATGAAGAGGAAATCAGAG+AGG | + | chr1_3:2391219-2391238 | Msa0096720:CDS | 40.0% | |
| GATGAAGAGGAAATCAGAGA+GGG | + | chr1_3:2391220-2391239 | Msa0096720:CDS | 40.0% | |
| GAAGATGAAAAACCTCAGGT+TGG | + | chr1_3:2391286-2391305 | Msa0096720:CDS | 40.0% | |
| CAAGAGTTATGCCCAATCTA+TGG | + | chr1_3:2391348-2391367 | Msa0096720:CDS | 40.0% | |
| ! | TATGCCCAATCTATGGGTTT+TGG | + | chr1_3:2391355-2391374 | Msa0096720:CDS | 40.0% |
| TTTACTCTAGCATGTAGTCG+TGG | + | chr1_3:2391424-2391443 | Msa0096720:CDS | 40.0% | |
| CTAAAATAGCGTGCTTTGTC+AGG | - | chr1_3:2391598-2391617 | None:intergenic | 40.0% | |
| ! | TCTAACCTCCTTTTCAAACG+AGG | - | chr1_3:2391640-2391659 | None:intergenic | 40.0% |
| ! | AGCCGCAATTGCATTTTTCA+TGG | - | chr1_3:2392169-2392188 | None:intergenic | 40.0% |
| TGGATCCTCGTTTGAAAAGG+AGG | + | chr1_3:2391632-2391651 | Msa0096720:CDS | 45.0% | |
| AAAGTGAGGAGACTACGACT+TGG | + | chr1_3:2391775-2391794 | Msa0096720:CDS | 45.0% | |
| AAGTGAGGAGACTACGACTT+GGG | + | chr1_3:2391776-2391795 | Msa0096720:CDS | 45.0% | |
| ! | ATGCCTTTTGCCCCATTTGT+TGG | + | chr1_3:2391997-2392016 | Msa0096720:CDS | 45.0% |
| ACTCCAACAAATGGGGCAAA+AGG | - | chr1_3:2392003-2392022 | None:intergenic | 45.0% | |
| ! | ACAACACAGATTGGCCATGA+TGG | - | chr1_3:2392029-2392048 | None:intergenic | 45.0% |
| TCATGGCCAATCTGTGTTGT+TGG | + | chr1_3:2392029-2392048 | Msa0096720:CDS | 45.0% | |
| ! | CATGGCCAATCTGTGTTGTT+GGG | + | chr1_3:2392030-2392049 | Msa0096720:CDS | 45.0% |
| ! | CTGTGCTTTATTGTCGAAGG+AGG | + | chr1_3:2392053-2392072 | Msa0096720:CDS | 45.0% |
| GCATGCACTCTAACCATGTT+TGG | - | chr1_3:2392104-2392123 | None:intergenic | 45.0% | |
| ACATGGTTAGAGTGCATGCA+TGG | + | chr1_3:2392105-2392124 | Msa0096720:CDS | 45.0% | |
| TGGATCCTCGTTTGAAAAGG+AGG | + | chr1_3:2391632-2391651 | Msa0096720:CDS | 45.0% | |
| AAAGTGAGGAGACTACGACT+TGG | + | chr1_3:2391775-2391794 | Msa0096720:CDS | 45.0% | |
| AAGTGAGGAGACTACGACTT+GGG | + | chr1_3:2391776-2391795 | Msa0096720:CDS | 45.0% | |
| ! | ATGCCTTTTGCCCCATTTGT+TGG | + | chr1_3:2391997-2392016 | Msa0096720:CDS | 45.0% |
| ACTCCAACAAATGGGGCAAA+AGG | - | chr1_3:2392003-2392022 | None:intergenic | 45.0% | |
| ! | ACAACACAGATTGGCCATGA+TGG | - | chr1_3:2392029-2392048 | None:intergenic | 45.0% |
| TCATGGCCAATCTGTGTTGT+TGG | + | chr1_3:2392029-2392048 | Msa0096720:CDS | 45.0% | |
| ! | CATGGCCAATCTGTGTTGTT+GGG | + | chr1_3:2392030-2392049 | Msa0096720:CDS | 45.0% |
| ! | CTGTGCTTTATTGTCGAAGG+AGG | + | chr1_3:2392053-2392072 | Msa0096720:CDS | 45.0% |
| GCATGCACTCTAACCATGTT+TGG | - | chr1_3:2392104-2392123 | None:intergenic | 45.0% | |
| ACATGGTTAGAGTGCATGCA+TGG | + | chr1_3:2392105-2392124 | Msa0096720:CDS | 45.0% | |
| AGTGAGGAGACTACGACTTG+GGG | + | chr1_3:2391777-2391796 | Msa0096720:CDS | 50.0% | |
| TTTGGGCAGATGCGAGATGT+AGG | + | chr1_3:2391908-2391927 | Msa0096720:CDS | 50.0% | |
| TTGGGCAGATGCGAGATGTA+GGG | + | chr1_3:2391909-2391928 | Msa0096720:CDS | 50.0% | |
| CACAGCCCAACAACACAGAT+TGG | - | chr1_3:2392038-2392057 | None:intergenic | 50.0% | |
| ! | GGGCTGTGCTTTATTGTCGA+AGG | + | chr1_3:2392050-2392069 | Msa0096720:CDS | 50.0% |
| AGTGAGGAGACTACGACTTG+GGG | + | chr1_3:2391777-2391796 | Msa0096720:CDS | 50.0% | |
| TTTGGGCAGATGCGAGATGT+AGG | + | chr1_3:2391908-2391927 | Msa0096720:CDS | 50.0% | |
| TTGGGCAGATGCGAGATGTA+GGG | + | chr1_3:2391909-2391928 | Msa0096720:CDS | 50.0% | |
| CACAGCCCAACAACACAGAT+TGG | - | chr1_3:2392038-2392057 | None:intergenic | 50.0% | |
| ! | GGGCTGTGCTTTATTGTCGA+AGG | + | chr1_3:2392050-2392069 | Msa0096720:CDS | 50.0% |
| ! | AGGAGACTACGACTTGGGGC+TGG | + | chr1_3:2391781-2391800 | Msa0096720:CDS | 60.0% |
| ACTTGGGGCTGGAGATGCTG+AGG | + | chr1_3:2391792-2391811 | Msa0096720:CDS | 60.0% | |
| ! | AGGAGACTACGACTTGGGGC+TGG | + | chr1_3:2391781-2391800 | Msa0096720:CDS | 60.0% |
| ACTTGGGGCTGGAGATGCTG+AGG | + | chr1_3:2391792-2391811 | Msa0096720:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 2390951 | 2392261 | 2390951 | ID=Msa0096720;Name=Msa0096720 |
| chr1_3 | mRNA | 2390951 | 2392261 | 2390951 | ID=Msa0096720-mRNA-1;Parent=Msa0096720;Name=Msa0096720-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|0.5|1|1|1|2|25|361 |
| chr1_3 | exon | 2390951 | 2390996 | 2390951 | ID=Msa0096720-mRNA-1:exon:615;Parent=Msa0096720-mRNA-1 |
| chr1_3 | exon | 2391197 | 2392261 | 2391197 | ID=Msa0096720-mRNA-1:exon:616;Parent=Msa0096720-mRNA-1 |
| chr1_3 | CDS | 2390951 | 2390996 | 2390951 | ID=Msa0096720-mRNA-1:cds;Parent=Msa0096720-mRNA-1 |
| chr1_3 | CDS | 2391197 | 2392236 | 2391197 | ID=Msa0096720-mRNA-1:cds;Parent=Msa0096720-mRNA-1 |
| chr1_3 | three_prime_UTR | 2392237 | 2392261 | 2392237 | ID=Msa0096720-mRNA-1:three_prime_utr;Parent=Msa0096720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
