Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0096910 | TKY57836.1 | 33.080 | 263 | 116 | 7 | 3 | 215 | 8 | 260 | 8.98e-35 | 134 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0096910 | A0A4D6MC66 | 32.234 | 273 | 118 | 6 | 4 | 215 | 9 | 275 | 3.64e-33 | 130 |
Gene ID | Type | Classification |
---|---|---|
Msa0096910 | TF | NAC |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Find 44 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCAGCTTAAGCATGCACTTC+TGG | 0.248003 | 1_3:+2655326 | Msa0096910:CDS |
CAATGGTTCTGAGCTAATTA+AGG | 0.256935 | 1_3:+2653911 | Msa0096910:CDS |
GGTACTGTAAGACAGGATTT+TGG | 0.279481 | 1_3:+2654045 | Msa0096910:intron |
GGAGCTGATAACGTGGTTCT+AGG | 0.360842 | 1_3:+2654101 | Msa0096910:CDS |
CCACCAGGGATGGATCTAAA+AGG | 0.365878 | 1_3:+2654364 | Msa0096910:CDS |
GCTGGTGCTAGTGCTGCTAT+TGG | 0.369554 | 1_3:+2654466 | Msa0096910:CDS |
CGTGTGTTTGACTGCCCACC+AGG | 0.419940 | 1_3:+2654349 | Msa0096910:CDS |
GAAGAGATTCAGAATTTCAA+TGG | 0.424440 | 1_3:+2653894 | Msa0096910:CDS |
AGGTGATGCATCGTATTTGC+AGG | 0.428163 | 1_3:+2654528 | Msa0096910:CDS |
GTTGGTTCTGCTGCTGATGC+TGG | 0.438309 | 1_3:+2654490 | Msa0096910:CDS |
TGATGTCGCTCAGAAACCTA+TGG | 0.450742 | 1_3:+2654441 | Msa0096910:CDS |
GCTAGTGCTGCTATTGGTGT+TGG | 0.469075 | 1_3:+2654472 | Msa0096910:CDS |
AACACACGACAAACAACAAA+AGG | 0.472249 | 1_3:-2654334 | None:intergenic |
CAGAGGAGGTACTGTAAGAC+AGG | 0.478625 | 1_3:+2654038 | Msa0096910:intron |
CAAATGGGTCATACTGGTAC+AGG | 0.492656 | 1_3:-2653941 | None:intergenic |
ATGGATCTAAAAGGTGAGTT+CGG | 0.503657 | 1_3:+2654373 | Msa0096910:CDS |
GAATTGTTTCCACCTGGAGT+TGG | 0.516842 | 1_3:+2653816 | Msa0096910:CDS |
GATGTCGCTCAGAAACCTAT+GGG | 0.517207 | 1_3:+2654442 | Msa0096910:CDS |
AGTGCATGCTTAAGCTGCTC+CGG | 0.528189 | 1_3:-2655321 | None:intergenic |
GAAGGGACGAAGCCAACTCC+AGG | 0.543255 | 1_3:-2653828 | None:intergenic |
CACTCTTGCTAACAAGCCTC+AGG | 0.544263 | 1_3:+2654202 | Msa0096910:CDS |
GTTGAAGAAGGCGATGCTGC+TGG | 0.544550 | 1_3:+2654409 | Msa0096910:CDS |
TGGACGCTGTCAAAACCAGC+TGG | 0.550147 | 1_3:+2654165 | Msa0096910:CDS |
GCTGGTCGTGCTGCTGAGCA+AGG | 0.554733 | 1_3:+2654508 | Msa0096910:CDS |
AGGTGAGTTCGGAGCCTTGA+CGG | 0.561338 | 1_3:+2654384 | Msa0096910:CDS |
GCCTTGACGGATGTTGAAGA+AGG | 0.563038 | 1_3:+2654397 | Msa0096910:CDS |
CCACATGGAAGCTATGATAC+CGG | 0.566035 | 1_3:+2655302 | Msa0096910:CDS |
GTTTGACTGCCCACCAGGGA+TGG | 0.566884 | 1_3:+2654354 | Msa0096910:CDS |
GCTGTTCGAGACATTACCGT+TGG | 0.568138 | 1_3:+2654080 | Msa0096910:CDS |
GCAATGGAATTGTTTCCACC+TGG | 0.583138 | 1_3:+2653810 | None:intergenic |
GCCTTCTTCAACATCCGTCA+AGG | 0.599602 | 1_3:-2654398 | None:intergenic |
GTACTCGTACATAGTCCAGC+TGG | 0.603542 | 1_3:-2654180 | None:intergenic |
CTAACAAGGAGCTCATCAGA+AGG | 0.607644 | 1_3:-2653846 | None:intergenic |
TAACAAGGAGCTCATCAGAA+GGG | 0.608778 | 1_3:-2653845 | None:intergenic |
TGACTGTGTTGTCTTCCACA+TGG | 0.610846 | 1_3:+2655287 | Msa0096910:CDS |
CTATTTAGGAAATTCACCGA+TGG | 0.613156 | 1_3:+2654145 | Msa0096910:CDS |
TGGCAAGATAGTAGCTAACA+AGG | 0.620882 | 1_3:-2653860 | None:intergenic |
AACCACGTTATCAGCTCCAA+CGG | 0.626095 | 1_3:-2654096 | None:intergenic |
TACCGTTGGAGCTGATAACG+TGG | 0.651576 | 1_3:+2654094 | Msa0096910:CDS |
GGGACGAAGCCAACTCCAGG+TGG | 0.660104 | 1_3:-2653825 | None:intergenic |
ATGTCGCTCAGAAACCTATG+GGG | 0.679776 | 1_3:+2654443 | Msa0096910:CDS |
CCGGTATCATAGCTTCCATG+TGG | 0.697172 | 1_3:-2655302 | None:intergenic |
GTGTGTTTGACTGCCCACCA+GGG | 0.714218 | 1_3:+2654350 | Msa0096910:CDS |
TGTCGCTCAGAAACCTATGG+GGG | 0.722313 | 1_3:+2654444 | Msa0096910:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTTGAAATTTTAAAGAAT+CGG | - | chr1_3:2654943-2654962 | None:intergenic | 10.0% |
!!! | TTTTTGAAATTTTAAAGAAT+CGG | - | chr1_3:2654943-2654962 | None:intergenic | 10.0% |
!! | TCAATGATTAATTAATGTAT+TGG | + | chr1_3:2654270-2654289 | Msa0096910:intron | 15.0% |
!! | TTATATATAAATAATTGTGC+AGG | + | chr1_3:2654309-2654328 | Msa0096910:intron | 15.0% |
!! | GATAAAATTTATCAAAACTT+TGG | + | chr1_3:2654792-2654811 | Msa0096910:intron | 15.0% |
!! | TCAATGATTAATTAATGTAT+TGG | + | chr1_3:2654270-2654289 | Msa0096910:intron | 15.0% |
!! | TTATATATAAATAATTGTGC+AGG | + | chr1_3:2654309-2654328 | Msa0096910:intron | 15.0% |
!! | GATAAAATTTATCAAAACTT+TGG | + | chr1_3:2654792-2654811 | Msa0096910:intron | 15.0% |
!! | TGATGAAATAAAGAACAAAA+GGG | - | chr1_3:2654253-2654272 | None:intergenic | 20.0% |
!! | TTGATGAAATAAAGAACAAA+AGG | - | chr1_3:2654254-2654273 | None:intergenic | 20.0% |
!! | AATATAAAGAGAGAACAAAA+TGG | - | chr1_3:2654565-2654584 | None:intergenic | 20.0% |
!! | TATTTATGATGAATTTGTCA+TGG | - | chr1_3:2655132-2655151 | None:intergenic | 20.0% |
!!! | CAACTTTTCATTTCATTTTA+TGG | + | chr1_3:2655183-2655202 | Msa0096910:intron | 20.0% |
!!! | ATTTTATGGTAGAGAAAATA+AGG | + | chr1_3:2655197-2655216 | Msa0096910:intron | 20.0% |
!! | TGATGAAATAAAGAACAAAA+GGG | - | chr1_3:2654253-2654272 | None:intergenic | 20.0% |
!! | TTGATGAAATAAAGAACAAA+AGG | - | chr1_3:2654254-2654273 | None:intergenic | 20.0% |
!! | AATATAAAGAGAGAACAAAA+TGG | - | chr1_3:2654565-2654584 | None:intergenic | 20.0% |
!! | TATTTATGATGAATTTGTCA+TGG | - | chr1_3:2655132-2655151 | None:intergenic | 20.0% |
!!! | CAACTTTTCATTTCATTTTA+TGG | + | chr1_3:2655183-2655202 | Msa0096910:intron | 20.0% |
!!! | ATTTTATGGTAGAGAAAATA+AGG | + | chr1_3:2655197-2655216 | Msa0096910:intron | 20.0% |
!!! | AATCTCTTCATTGTTTTTGT+TGG | - | chr1_3:2653883-2653902 | None:intergenic | 25.0% |
!! | TCTCTCTTCTTTTTCTATTT+AGG | + | chr1_3:2654131-2654150 | Msa0096910:CDS | 25.0% |
! | ATATGTACTTGACTGATATT+GGG | + | chr1_3:2654648-2654667 | Msa0096910:intron | 25.0% |
!! | TATGGCCAATTTTTAAATTG+TGG | + | chr1_3:2654734-2654753 | Msa0096910:intron | 25.0% |
! | TTGGCTTCTTACAAAAAATT+CGG | + | chr1_3:2654870-2654889 | Msa0096910:intron | 25.0% |
! | ACATGTTACAATTACATGAA+TGG | - | chr1_3:2654980-2654999 | None:intergenic | 25.0% |
!!! | GTTTTGTTTTGATGTTTATC+AGG | + | chr1_3:2655245-2655264 | Msa0096910:intron | 25.0% |
!!! | AATCTCTTCATTGTTTTTGT+TGG | - | chr1_3:2653883-2653902 | None:intergenic | 25.0% |
!! | TCTCTCTTCTTTTTCTATTT+AGG | + | chr1_3:2654131-2654150 | Msa0096910:CDS | 25.0% |
! | ATATGTACTTGACTGATATT+GGG | + | chr1_3:2654648-2654667 | Msa0096910:intron | 25.0% |
!! | TATGGCCAATTTTTAAATTG+TGG | + | chr1_3:2654734-2654753 | Msa0096910:intron | 25.0% |
! | TTGGCTTCTTACAAAAAATT+CGG | + | chr1_3:2654870-2654889 | Msa0096910:intron | 25.0% |
! | ACATGTTACAATTACATGAA+TGG | - | chr1_3:2654980-2654999 | None:intergenic | 25.0% |
!!! | GTTTTGTTTTGATGTTTATC+AGG | + | chr1_3:2655245-2655264 | Msa0096910:intron | 25.0% |
GAAGAGATTCAGAATTTCAA+TGG | + | chr1_3:2653894-2653913 | Msa0096910:CDS | 30.0% | |
TGAAGCAATAAAATTCCCTT+GGG | - | chr1_3:2654001-2654020 | None:intergenic | 30.0% | |
GAAATAAAGAACAAAAGGGA+AGG | - | chr1_3:2654249-2654268 | None:intergenic | 30.0% | |
CATATGTACTTGACTGATAT+TGG | + | chr1_3:2654647-2654666 | Msa0096910:intron | 30.0% | |
TAAAATGTTGCGATTGAATG+TGG | + | chr1_3:2654683-2654702 | Msa0096910:intron | 30.0% | |
AAAATGTTGCGATTGAATGT+GGG | + | chr1_3:2654684-2654703 | Msa0096910:intron | 30.0% | |
AGCGACCACAATTTAAAAAT+TGG | - | chr1_3:2654742-2654761 | None:intergenic | 30.0% | |
! | AATTTTTAAATTGTGGTCGC+TGG | + | chr1_3:2654741-2654760 | Msa0096910:intron | 30.0% |
! | TCTCATTAGTGTCAATTTTG+TGG | + | chr1_3:2654841-2654860 | Msa0096910:intron | 30.0% |
! | CTCATTAGTGTCAATTTTGT+GGG | + | chr1_3:2654842-2654861 | Msa0096910:intron | 30.0% |
TGGCTTCTTACAAAAAATTC+GGG | + | chr1_3:2654871-2654890 | Msa0096910:intron | 30.0% | |
GAAGAGATTCAGAATTTCAA+TGG | + | chr1_3:2653894-2653913 | Msa0096910:CDS | 30.0% | |
TGAAGCAATAAAATTCCCTT+GGG | - | chr1_3:2654001-2654020 | None:intergenic | 30.0% | |
GAAATAAAGAACAAAAGGGA+AGG | - | chr1_3:2654249-2654268 | None:intergenic | 30.0% | |
CATATGTACTTGACTGATAT+TGG | + | chr1_3:2654647-2654666 | Msa0096910:intron | 30.0% | |
TAAAATGTTGCGATTGAATG+TGG | + | chr1_3:2654683-2654702 | Msa0096910:intron | 30.0% | |
AAAATGTTGCGATTGAATGT+GGG | + | chr1_3:2654684-2654703 | Msa0096910:intron | 30.0% | |
AGCGACCACAATTTAAAAAT+TGG | - | chr1_3:2654742-2654761 | None:intergenic | 30.0% | |
! | AATTTTTAAATTGTGGTCGC+TGG | + | chr1_3:2654741-2654760 | Msa0096910:intron | 30.0% |
! | TCTCATTAGTGTCAATTTTG+TGG | + | chr1_3:2654841-2654860 | Msa0096910:intron | 30.0% |
! | CTCATTAGTGTCAATTTTGT+GGG | + | chr1_3:2654842-2654861 | Msa0096910:intron | 30.0% |
TGGCTTCTTACAAAAAATTC+GGG | + | chr1_3:2654871-2654890 | Msa0096910:intron | 30.0% | |
!! | CAATGGTTCTGAGCTAATTA+AGG | + | chr1_3:2653911-2653930 | Msa0096910:CDS | 35.0% |
GAGTAAGACGCAATTCAAAT+GGG | - | chr1_3:2653959-2653978 | None:intergenic | 35.0% | |
GTGAAGCAATAAAATTCCCT+TGG | - | chr1_3:2654002-2654021 | None:intergenic | 35.0% | |
! | ACAGGATTTTGGATGCAAAA+GGG | + | chr1_3:2654056-2654075 | Msa0096910:CDS | 35.0% |
CTATTTAGGAAATTCACCGA+TGG | + | chr1_3:2654145-2654164 | Msa0096910:CDS | 35.0% | |
AACACACGACAAACAACAAA+AGG | - | chr1_3:2654337-2654356 | None:intergenic | 35.0% | |
ATGGATCTAAAAGGTGAGTT+CGG | + | chr1_3:2654373-2654392 | Msa0096910:CDS | 35.0% | |
CATCAAAATCAGTGATGTTG+TGG | - | chr1_3:2654710-2654729 | None:intergenic | 35.0% | |
!!! | CACTGATTTTGATGTCTGTA+TGG | + | chr1_3:2654716-2654735 | Msa0096910:intron | 35.0% |
! | GTCAATTTTGTGGGATAACT+TGG | + | chr1_3:2654851-2654870 | Msa0096910:intron | 35.0% |
!! | CAATGGTTCTGAGCTAATTA+AGG | + | chr1_3:2653911-2653930 | Msa0096910:CDS | 35.0% |
GAGTAAGACGCAATTCAAAT+GGG | - | chr1_3:2653959-2653978 | None:intergenic | 35.0% | |
GTGAAGCAATAAAATTCCCT+TGG | - | chr1_3:2654002-2654021 | None:intergenic | 35.0% | |
! | ACAGGATTTTGGATGCAAAA+GGG | + | chr1_3:2654056-2654075 | Msa0096910:CDS | 35.0% |
CTATTTAGGAAATTCACCGA+TGG | + | chr1_3:2654145-2654164 | Msa0096910:CDS | 35.0% | |
AACACACGACAAACAACAAA+AGG | - | chr1_3:2654337-2654356 | None:intergenic | 35.0% | |
ATGGATCTAAAAGGTGAGTT+CGG | + | chr1_3:2654373-2654392 | Msa0096910:CDS | 35.0% | |
CATCAAAATCAGTGATGTTG+TGG | - | chr1_3:2654710-2654729 | None:intergenic | 35.0% | |
!!! | CACTGATTTTGATGTCTGTA+TGG | + | chr1_3:2654716-2654735 | Msa0096910:intron | 35.0% |
! | GTCAATTTTGTGGGATAACT+TGG | + | chr1_3:2654851-2654870 | Msa0096910:intron | 35.0% |
TAACAAGGAGCTCATCAGAA+GGG | - | chr1_3:2653848-2653867 | None:intergenic | 40.0% | |
TGGCAAGATAGTAGCTAACA+AGG | - | chr1_3:2653863-2653882 | None:intergenic | 40.0% | |
GCAATTCAAATGGGTCATAC+TGG | - | chr1_3:2653950-2653969 | None:intergenic | 40.0% | |
GGAGTAAGACGCAATTCAAA+TGG | - | chr1_3:2653960-2653979 | None:intergenic | 40.0% | |
! | GGTACTGTAAGACAGGATTT+TGG | + | chr1_3:2654045-2654064 | Msa0096910:intron | 40.0% |
! | GACAGGATTTTGGATGCAAA+AGG | + | chr1_3:2654055-2654074 | Msa0096910:CDS | 40.0% |
AAGCCTCAGGTATGACATTT+GGG | + | chr1_3:2654215-2654234 | Msa0096910:intron | 40.0% | |
TTTCCCAAATGTCATACCTG+AGG | - | chr1_3:2654221-2654240 | None:intergenic | 40.0% | |
AGGACGTGATTTGAAGAATC+TGG | - | chr1_3:2655088-2655107 | None:intergenic | 40.0% | |
TAACAAGGAGCTCATCAGAA+GGG | - | chr1_3:2653848-2653867 | None:intergenic | 40.0% | |
TGGCAAGATAGTAGCTAACA+AGG | - | chr1_3:2653863-2653882 | None:intergenic | 40.0% | |
GCAATTCAAATGGGTCATAC+TGG | - | chr1_3:2653950-2653969 | None:intergenic | 40.0% | |
GGAGTAAGACGCAATTCAAA+TGG | - | chr1_3:2653960-2653979 | None:intergenic | 40.0% | |
! | GGTACTGTAAGACAGGATTT+TGG | + | chr1_3:2654045-2654064 | Msa0096910:intron | 40.0% |
! | GACAGGATTTTGGATGCAAA+AGG | + | chr1_3:2654055-2654074 | Msa0096910:CDS | 40.0% |
AAGCCTCAGGTATGACATTT+GGG | + | chr1_3:2654215-2654234 | Msa0096910:intron | 40.0% | |
TTTCCCAAATGTCATACCTG+AGG | - | chr1_3:2654221-2654240 | None:intergenic | 40.0% | |
AGGACGTGATTTGAAGAATC+TGG | - | chr1_3:2655088-2655107 | None:intergenic | 40.0% | |
GAATTGTTTCCACCTGGAGT+TGG | + | chr1_3:2653816-2653835 | Msa0096910:CDS | 45.0% | |
CTAACAAGGAGCTCATCAGA+AGG | - | chr1_3:2653849-2653868 | None:intergenic | 45.0% | |
CAAATGGGTCATACTGGTAC+AGG | - | chr1_3:2653944-2653963 | None:intergenic | 45.0% | |
! | CTTTTCCTTCTGTCACCCAA+GGG | + | chr1_3:2653983-2654002 | Msa0096910:intron | 45.0% |
AAATTCCCTTGGGTGACAGA+AGG | - | chr1_3:2653991-2654010 | None:intergenic | 45.0% | |
AACCACGTTATCAGCTCCAA+CGG | - | chr1_3:2654099-2654118 | None:intergenic | 45.0% | |
CAAGCCTCAGGTATGACATT+TGG | + | chr1_3:2654214-2654233 | Msa0096910:intron | 45.0% | |
! | CTTTTAGATCCATCCCTGGT+GGG | - | chr1_3:2654366-2654385 | None:intergenic | 45.0% |
! | TCACCTTTTAGATCCATCCC+TGG | - | chr1_3:2654370-2654389 | None:intergenic | 45.0% |
TGATGTCGCTCAGAAACCTA+TGG | + | chr1_3:2654441-2654460 | Msa0096910:CDS | 45.0% | |
GATGTCGCTCAGAAACCTAT+GGG | + | chr1_3:2654442-2654461 | Msa0096910:CDS | 45.0% | |
ATGTCGCTCAGAAACCTATG+GGG | + | chr1_3:2654443-2654462 | Msa0096910:CDS | 45.0% | |
AGGTGATGCATCGTATTTGC+AGG | + | chr1_3:2654528-2654547 | Msa0096910:CDS | 45.0% | |
TGACTGTGTTGTCTTCCACA+TGG | + | chr1_3:2655287-2655306 | Msa0096910:CDS | 45.0% | |
CCACATGGAAGCTATGATAC+CGG | + | chr1_3:2655302-2655321 | Msa0096910:CDS | 45.0% | |
GAATTGTTTCCACCTGGAGT+TGG | + | chr1_3:2653816-2653835 | Msa0096910:CDS | 45.0% | |
CTAACAAGGAGCTCATCAGA+AGG | - | chr1_3:2653849-2653868 | None:intergenic | 45.0% | |
CAAATGGGTCATACTGGTAC+AGG | - | chr1_3:2653944-2653963 | None:intergenic | 45.0% | |
! | CTTTTCCTTCTGTCACCCAA+GGG | + | chr1_3:2653983-2654002 | Msa0096910:intron | 45.0% |
AAATTCCCTTGGGTGACAGA+AGG | - | chr1_3:2653991-2654010 | None:intergenic | 45.0% | |
AACCACGTTATCAGCTCCAA+CGG | - | chr1_3:2654099-2654118 | None:intergenic | 45.0% | |
CAAGCCTCAGGTATGACATT+TGG | + | chr1_3:2654214-2654233 | Msa0096910:intron | 45.0% | |
! | CTTTTAGATCCATCCCTGGT+GGG | - | chr1_3:2654366-2654385 | None:intergenic | 45.0% |
! | TCACCTTTTAGATCCATCCC+TGG | - | chr1_3:2654370-2654389 | None:intergenic | 45.0% |
TGATGTCGCTCAGAAACCTA+TGG | + | chr1_3:2654441-2654460 | Msa0096910:CDS | 45.0% | |
GATGTCGCTCAGAAACCTAT+GGG | + | chr1_3:2654442-2654461 | Msa0096910:CDS | 45.0% | |
ATGTCGCTCAGAAACCTATG+GGG | + | chr1_3:2654443-2654462 | Msa0096910:CDS | 45.0% | |
AGGTGATGCATCGTATTTGC+AGG | + | chr1_3:2654528-2654547 | Msa0096910:CDS | 45.0% | |
TGACTGTGTTGTCTTCCACA+TGG | + | chr1_3:2655287-2655306 | Msa0096910:CDS | 45.0% | |
CCACATGGAAGCTATGATAC+CGG | + | chr1_3:2655302-2655321 | Msa0096910:CDS | 45.0% | |
!! | AAAAAAATTTAAAGAAAAAA+AGG | - | chr1_3:2655108-2655127 | None:intergenic | 5.0% |
!! | AAAAAAATTTAAAGAAAAAA+AGG | - | chr1_3:2655108-2655127 | None:intergenic | 5.0% |
GGGTGACAGAAGGAAAAGGA+TGG | - | chr1_3:2653981-2654000 | None:intergenic | 50.0% | |
CCTTGGGTGACAGAAGGAAA+AGG | - | chr1_3:2653985-2654004 | None:intergenic | 50.0% | |
! | CCTTTTCCTTCTGTCACCCA+AGG | + | chr1_3:2653982-2654001 | Msa0096910:intron | 50.0% |
!! | CTGCCAAAGTTGATGAGCAG+AGG | + | chr1_3:2654021-2654040 | Msa0096910:intron | 50.0% |
CCTCCTCTGCTCATCAACTT+TGG | - | chr1_3:2654027-2654046 | None:intergenic | 50.0% | |
!! | CCAAAGTTGATGAGCAGAGG+AGG | + | chr1_3:2654024-2654043 | Msa0096910:intron | 50.0% |
!! | CAGAGGAGGTACTGTAAGAC+AGG | + | chr1_3:2654038-2654057 | Msa0096910:intron | 50.0% |
GCTGTTCGAGACATTACCGT+TGG | + | chr1_3:2654080-2654099 | Msa0096910:CDS | 50.0% | |
! | TACCGTTGGAGCTGATAACG+TGG | + | chr1_3:2654094-2654113 | Msa0096910:CDS | 50.0% |
! | GGAGCTGATAACGTGGTTCT+AGG | + | chr1_3:2654101-2654120 | Msa0096910:CDS | 50.0% |
!!! | CTGGTTTTGACAGCGTCCAT+CGG | - | chr1_3:2654164-2654183 | None:intergenic | 50.0% |
GTACTCGTACATAGTCCAGC+TGG | - | chr1_3:2654183-2654202 | None:intergenic | 50.0% | |
CACTCTTGCTAACAAGCCTC+AGG | + | chr1_3:2654202-2654221 | Msa0096910:CDS | 50.0% | |
! | CCTTTTAGATCCATCCCTGG+TGG | - | chr1_3:2654367-2654386 | None:intergenic | 50.0% |
CCACCAGGGATGGATCTAAA+AGG | + | chr1_3:2654364-2654383 | Msa0096910:CDS | 50.0% | |
! | GCCTTGACGGATGTTGAAGA+AGG | + | chr1_3:2654397-2654416 | Msa0096910:CDS | 50.0% |
GCCTTCTTCAACATCCGTCA+AGG | - | chr1_3:2654401-2654420 | None:intergenic | 50.0% | |
TGTCGCTCAGAAACCTATGG+GGG | + | chr1_3:2654444-2654463 | Msa0096910:CDS | 50.0% | |
! | GCTAGTGCTGCTATTGGTGT+TGG | + | chr1_3:2654472-2654491 | Msa0096910:CDS | 50.0% |
CCGGTATCATAGCTTCCATG+TGG | - | chr1_3:2655305-2655324 | None:intergenic | 50.0% | |
AGTGCATGCTTAAGCTGCTC+CGG | - | chr1_3:2655324-2655343 | None:intergenic | 50.0% | |
GCAGCTTAAGCATGCACTTC+TGG | + | chr1_3:2655326-2655345 | Msa0096910:CDS | 50.0% | |
GGGTGACAGAAGGAAAAGGA+TGG | - | chr1_3:2653981-2654000 | None:intergenic | 50.0% | |
CCTTGGGTGACAGAAGGAAA+AGG | - | chr1_3:2653985-2654004 | None:intergenic | 50.0% | |
! | CCTTTTCCTTCTGTCACCCA+AGG | + | chr1_3:2653982-2654001 | Msa0096910:intron | 50.0% |
!! | CTGCCAAAGTTGATGAGCAG+AGG | + | chr1_3:2654021-2654040 | Msa0096910:intron | 50.0% |
CCTCCTCTGCTCATCAACTT+TGG | - | chr1_3:2654027-2654046 | None:intergenic | 50.0% | |
!! | CCAAAGTTGATGAGCAGAGG+AGG | + | chr1_3:2654024-2654043 | Msa0096910:intron | 50.0% |
!! | CAGAGGAGGTACTGTAAGAC+AGG | + | chr1_3:2654038-2654057 | Msa0096910:intron | 50.0% |
GCTGTTCGAGACATTACCGT+TGG | + | chr1_3:2654080-2654099 | Msa0096910:CDS | 50.0% | |
! | TACCGTTGGAGCTGATAACG+TGG | + | chr1_3:2654094-2654113 | Msa0096910:CDS | 50.0% |
! | GGAGCTGATAACGTGGTTCT+AGG | + | chr1_3:2654101-2654120 | Msa0096910:CDS | 50.0% |
!!! | CTGGTTTTGACAGCGTCCAT+CGG | - | chr1_3:2654164-2654183 | None:intergenic | 50.0% |
GTACTCGTACATAGTCCAGC+TGG | - | chr1_3:2654183-2654202 | None:intergenic | 50.0% | |
CACTCTTGCTAACAAGCCTC+AGG | + | chr1_3:2654202-2654221 | Msa0096910:CDS | 50.0% | |
! | CCTTTTAGATCCATCCCTGG+TGG | - | chr1_3:2654367-2654386 | None:intergenic | 50.0% |
CCACCAGGGATGGATCTAAA+AGG | + | chr1_3:2654364-2654383 | Msa0096910:CDS | 50.0% | |
! | GCCTTGACGGATGTTGAAGA+AGG | + | chr1_3:2654397-2654416 | Msa0096910:CDS | 50.0% |
GCCTTCTTCAACATCCGTCA+AGG | - | chr1_3:2654401-2654420 | None:intergenic | 50.0% | |
TGTCGCTCAGAAACCTATGG+GGG | + | chr1_3:2654444-2654463 | Msa0096910:CDS | 50.0% | |
! | GCTAGTGCTGCTATTGGTGT+TGG | + | chr1_3:2654472-2654491 | Msa0096910:CDS | 50.0% |
CCGGTATCATAGCTTCCATG+TGG | - | chr1_3:2655305-2655324 | None:intergenic | 50.0% | |
AGTGCATGCTTAAGCTGCTC+CGG | - | chr1_3:2655324-2655343 | None:intergenic | 50.0% | |
GCAGCTTAAGCATGCACTTC+TGG | + | chr1_3:2655326-2655345 | Msa0096910:CDS | 50.0% | |
TGGACGCTGTCAAAACCAGC+TGG | + | chr1_3:2654165-2654184 | Msa0096910:CDS | 55.0% | |
GTGTGTTTGACTGCCCACCA+GGG | + | chr1_3:2654350-2654369 | Msa0096910:CDS | 55.0% | |
AGGTGAGTTCGGAGCCTTGA+CGG | + | chr1_3:2654384-2654403 | Msa0096910:CDS | 55.0% | |
GTTGAAGAAGGCGATGCTGC+TGG | + | chr1_3:2654409-2654428 | Msa0096910:CDS | 55.0% | |
! | GCTGGTGCTAGTGCTGCTAT+TGG | + | chr1_3:2654466-2654485 | Msa0096910:CDS | 55.0% |
!! | GTTGGTTCTGCTGCTGATGC+TGG | + | chr1_3:2654490-2654509 | Msa0096910:CDS | 55.0% |
TGGACGCTGTCAAAACCAGC+TGG | + | chr1_3:2654165-2654184 | Msa0096910:CDS | 55.0% | |
GTGTGTTTGACTGCCCACCA+GGG | + | chr1_3:2654350-2654369 | Msa0096910:CDS | 55.0% | |
AGGTGAGTTCGGAGCCTTGA+CGG | + | chr1_3:2654384-2654403 | Msa0096910:CDS | 55.0% | |
GTTGAAGAAGGCGATGCTGC+TGG | + | chr1_3:2654409-2654428 | Msa0096910:CDS | 55.0% | |
! | GCTGGTGCTAGTGCTGCTAT+TGG | + | chr1_3:2654466-2654485 | Msa0096910:CDS | 55.0% |
!! | GTTGGTTCTGCTGCTGATGC+TGG | + | chr1_3:2654490-2654509 | Msa0096910:CDS | 55.0% |
GAAGGGACGAAGCCAACTCC+AGG | - | chr1_3:2653831-2653850 | None:intergenic | 60.0% | |
CGTGTGTTTGACTGCCCACC+AGG | + | chr1_3:2654349-2654368 | Msa0096910:CDS | 60.0% | |
GTTTGACTGCCCACCAGGGA+TGG | + | chr1_3:2654354-2654373 | Msa0096910:CDS | 60.0% | |
GCTCAGAAACCTATGGGGGC+TGG | + | chr1_3:2654448-2654467 | Msa0096910:CDS | 60.0% | |
GAAGGGACGAAGCCAACTCC+AGG | - | chr1_3:2653831-2653850 | None:intergenic | 60.0% | |
CGTGTGTTTGACTGCCCACC+AGG | + | chr1_3:2654349-2654368 | Msa0096910:CDS | 60.0% | |
GTTTGACTGCCCACCAGGGA+TGG | + | chr1_3:2654354-2654373 | Msa0096910:CDS | 60.0% | |
GCTCAGAAACCTATGGGGGC+TGG | + | chr1_3:2654448-2654467 | Msa0096910:CDS | 60.0% | |
GGGACGAAGCCAACTCCAGG+TGG | - | chr1_3:2653828-2653847 | None:intergenic | 65.0% | |
GCACTAGCACCAGCCCCCAT+AGG | - | chr1_3:2654460-2654479 | None:intergenic | 65.0% | |
! | GCTGGTCGTGCTGCTGAGCA+AGG | + | chr1_3:2654508-2654527 | Msa0096910:CDS | 65.0% |
GGGACGAAGCCAACTCCAGG+TGG | - | chr1_3:2653828-2653847 | None:intergenic | 65.0% | |
GCACTAGCACCAGCCCCCAT+AGG | - | chr1_3:2654460-2654479 | None:intergenic | 65.0% | |
! | GCTGGTCGTGCTGCTGAGCA+AGG | + | chr1_3:2654508-2654527 | Msa0096910:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_3 | gene | 2653813 | 2655383 | 2653813 | ID=Msa0096910;Name=Msa0096910 |
chr1_3 | mRNA | 2653813 | 2655383 | 2653813 | ID=Msa0096910-mRNA-1;Parent=Msa0096910;Name=Msa0096910-mRNA-1;_AED=0.28;_eAED=0.35;_QI=0|0|0|0.5|1|1|4|0|216 |
chr1_3 | exon | 2653813 | 2653949 | 2653813 | ID=Msa0096910-mRNA-1:exon:688;Parent=Msa0096910-mRNA-1 |
chr1_3 | exon | 2654046 | 2654223 | 2654046 | ID=Msa0096910-mRNA-1:exon:689;Parent=Msa0096910-mRNA-1 |
chr1_3 | exon | 2654331 | 2654549 | 2654331 | ID=Msa0096910-mRNA-1:exon:690;Parent=Msa0096910-mRNA-1 |
chr1_3 | exon | 2655267 | 2655383 | 2655267 | ID=Msa0096910-mRNA-1:exon:691;Parent=Msa0096910-mRNA-1 |
chr1_3 | CDS | 2653813 | 2653949 | 2653813 | ID=Msa0096910-mRNA-1:cds;Parent=Msa0096910-mRNA-1 |
chr1_3 | CDS | 2654046 | 2654223 | 2654046 | ID=Msa0096910-mRNA-1:cds;Parent=Msa0096910-mRNA-1 |
chr1_3 | CDS | 2654331 | 2654549 | 2654331 | ID=Msa0096910-mRNA-1:cds;Parent=Msa0096910-mRNA-1 |
chr1_3 | CDS | 2655267 | 2655383 | 2655267 | ID=Msa0096910-mRNA-1:cds;Parent=Msa0096910-mRNA-1 |
Gene Sequence |
Protein sequence |