AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0098780


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0098780 MtrunA17_Chr1g0151471 56.311 103 34 3 97 188 2 104 3.15e-23 89.7
Msa0098780 MtrunA17_Chr1g0151471 55.556 99 33 3 9 96 2 100 2.14e-20 82.4
Msa0098780 MtrunA17_Chr1g0151461 61.224 49 16 1 143 188 186 234 5.13e-12 63.5
Msa0098780 MtrunA17_Chr1g0151461 43.421 76 31 1 55 130 186 249 3.10e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0098780 AT5G56860.1 49.231 65 29 1 25 89 203 263 5.51e-12 64.3
Msa0098780 AT5G56860.1 49.231 65 29 1 113 177 203 263 5.51e-12 64.3

Find 48 sgRNAs with CRISPR-Local

Find 345 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTCTTTGTGGCTGGAAC+TGG 0.239072 1_3:-4789867 Msa0098770:intron
AGTATTCGCCATTGCCCTTT+TGG 0.253039 1_3:-4789978 Msa0098770:intron
AGTATTCGCCATTGCCCTTT+TGG 0.253039 1_3:-4795661 None:intergenic
ATGAGTATCAAGACCCTTAT+CGG 0.303482 1_3:-4790261 Msa0098770:intron
ATGAGTATCAAGACCCTTAT+CGG 0.303482 1_3:-4795948 None:intergenic
ATACAAACACTACTCCTCTT+TGG 0.387924 1_3:+4790030 Msa0098780:CDS
ATACAAACACTACTCCTCTT+TGG 0.387924 1_3:+4795713 Msa0098780:CDS
GGAAGAGGCAAAAGCCGATA+AGG 0.448770 1_3:+4790247 Msa0098780:CDS
GGAAGAGGCAAAAGCCGATA+AGG 0.448770 1_3:+4795934 Msa0098780:CDS
CAATCGAAACAAACCCTAGT+TGG 0.460017 1_3:-4790005 Msa0098770:intron
CAATCGAAACAAACCCTAGT+TGG 0.460017 1_3:-4795688 None:intergenic
TCTTGATACTCATAAGGAAA+AGG 0.465163 1_3:+4795958 Msa0098780:CDS
TTGCCTCTTCCCTTCTTCGT+CGG 0.477939 1_3:-4790235 Msa0098770:intron
TTGCCTCTTCCCTTCTTCGT+CGG 0.477939 1_3:-4795922 None:intergenic
CTTGATACTCATAAGGAAAA+GGG 0.489428 1_3:+4795959 Msa0098780:CDS
TAAGGGTCTTGATACTCATA+AGG 0.492473 1_3:+4795952 Msa0098780:CDS
ACTGAATACGAATACCCAAA+AGG 0.517161 1_3:+4789963 Msa0098780:CDS
ACTGAATACGAATACCCAAA+AGG 0.517161 1_3:+4795646 Msa0098780:CDS
GAAGAGGCAAAAGCCGATAA+GGG 0.529120 1_3:+4790248 Msa0098780:CDS
GAAGAGGCAAAAGCCGATAA+GGG 0.529120 1_3:+4795935 Msa0098780:CDS
CTGAATACGAATACCCAAAA+GGG 0.529249 1_3:+4789964 Msa0098780:CDS
CTGAATACGAATACCCAAAA+GGG 0.529249 1_3:+4795647 Msa0098780:CDS
ATGTGGACTCCGACGAAGAA+GGG 0.540307 1_3:+4790226 Msa0098780:CDS
ATGTGGACTCCGACGAAGAA+GGG 0.540307 1_3:+4795913 Msa0098780:CDS
CTTTGGAGGAGTGATCCTAC+AGG 0.546346 1_3:+4790047 Msa0098780:CDS
CTTTGGAGGAGTGATCCTAC+AGG 0.546346 1_3:+4795730 Msa0098780:CDS
GGCGAATACTATATCCAACT+AGG 0.572160 1_3:+4789991 Msa0098780:CDS
GGCGAATACTATATCCAACT+AGG 0.572160 1_3:+4795674 Msa0098780:CDS
CATGTGGACTCCGACGAAGA+AGG 0.573346 1_3:+4790225 Msa0098780:CDS
CATGTGGACTCCGACGAAGA+AGG 0.573346 1_3:+4795912 Msa0098780:CDS
GAGTGATCCTACAGGTTCCA+AGG 0.583772 1_3:+4790055 Msa0098780:CDS
GAGTGATCCTACAGGTTCCA+AGG 0.583772 1_3:+4795738 Msa0098780:CDS
ACTCCGACGAAGAAGGGAAG+AGG 0.589069 1_3:+4790232 Msa0098780:CDS
ACTCCGACGAAGAAGGGAAG+AGG 0.589069 1_3:+4795919 Msa0098780:CDS
CAAACACTACTCCTCTTTGG+AGG 0.592172 1_3:+4790033 Msa0098780:CDS
CAAACACTACTCCTCTTTGG+AGG 0.592172 1_3:+4795716 Msa0098780:CDS
GCGAATACTATATCCAACTA+GGG 0.606852 1_3:+4789992 Msa0098780:CDS
GCGAATACTATATCCAACTA+GGG 0.606852 1_3:+4795675 Msa0098780:CDS
CAGTCGTTGTGCAATGCATG+TGG 0.610062 1_3:+4790209 Msa0098780:intron
CAGTCGTTGTGCAATGCATG+TGG 0.610062 1_3:+4795896 Msa0098780:intron
ACGAATACCCAAAAGGGCAA+TGG 0.610371 1_3:+4789970 Msa0098780:CDS
ACGAATACCCAAAAGGGCAA+TGG 0.610371 1_3:+4795653 Msa0098780:CDS
ACTCATAAGGAAAAGGGCAA+TGG 0.616678 1_3:+4795965 Msa0098780:CDS
TGGCGAACGCTCATCATCTG+AGG 0.618644 1_3:+4795985 Msa0098780:CDS
CTAATTACCTTGGAACCTGT+AGG 0.621221 1_3:-4790062 Msa0098770:intron
CTAATTACCTTGGAACCTGT+AGG 0.621221 1_3:-4795745 None:intergenic
GTAGGATCACTCCTCCAAAG+AGG 0.666474 1_3:-4790044 Msa0098770:intron
GTAGGATCACTCCTCCAAAG+AGG 0.666474 1_3:-4795727 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTAAAAAAAAAAATTTA+AGG + chr1_3:4795165-4795184 Msa0098780:intron 0.0%
!!! GTTTTTAAATAAAAAATAAG+TGG + chr1_3:4790465-4790484 Msa0098780:intron 10.0%
!!! TAATTTAATTTAGGTAAATT+AGG + chr1_3:4792672-4792691 Msa0098780:intron 10.0%
!!! AATTTAATTTAGGTAAATTA+GGG + chr1_3:4792673-4792692 Msa0098780:intron 10.0%
!! TTGTTAAAAAAAAAATACAT+AGG - chr1_3:4794690-4794709 None:intergenic 10.0%
!!! CTTTTTTTTTTAATAAACTT+AGG - chr1_3:4794942-4794961 None:intergenic 10.0%
!!! AAAAAAAAAAATTTAAGGTA+TGG + chr1_3:4795170-4795189 Msa0098780:intron 10.0%
!! AATATCTTGAAAAAAATAAA+CGG + chr1_3:4795221-4795240 Msa0098780:intron 10.0%
!!! TTTATTTTTTTCTACTTTTA+GGG - chr1_3:4795382-4795401 None:intergenic 10.0%
!!! TTTTATTTTTTTCTACTTTT+AGG - chr1_3:4795383-4795402 None:intergenic 10.0%
!! TATTATGGTGAATTAAATAA+AGG + chr1_3:4790568-4790587 Msa0098780:intron 15.0%
!! TTTCATTCTATACAAAAAAA+GGG + chr1_3:4790750-4790769 Msa0098780:intron 15.0%
!! TAATATCTTTCAAAGAATAA+TGG + chr1_3:4791431-4791450 Msa0098780:intron 15.0%
!! AATATCTTTCAAAGAATAAT+GGG + chr1_3:4791432-4791451 Msa0098780:intron 15.0%
!! ACTATACAAAATAAAAGAAT+TGG + chr1_3:4791594-4791613 Msa0098780:intron 15.0%
!!! TTTCTCAAAAATTATTTTGT+CGG - chr1_3:4791652-4791671 Msa0098770:intron 15.0%
!!! TGATCTTTTATTTTATTGAA+GGG + chr1_3:4792270-4792289 Msa0098780:intron 15.0%
!!! GAAATTAAATTTAAGGTAAA+CGG - chr1_3:4792571-4792590 Msa0098770:intron 15.0%
!!! TATAAATCTCTCATTATTTT+AGG - chr1_3:4792955-4792974 Msa0098770:intron 15.0%
!! TTAGCAAAAAAGATTATATT+AGG - chr1_3:4794073-4794092 None:intergenic 15.0%
!!! ATTTTAATCTTAAAAGAAGT+GGG - chr1_3:4794385-4794404 None:intergenic 15.0%
!!! TATTTTAATCTTAAAAGAAG+TGG - chr1_3:4794386-4794405 None:intergenic 15.0%
!!! AACATAGTTTTTTTTTTCAT+TGG + chr1_3:4794642-4794661 Msa0098780:intron 15.0%
!! ATATCTTATAATTGAGAATA+TGG + chr1_3:4794825-4794844 Msa0098780:intron 15.0%
!! GTATTGTAAACAAAAAAAAA+AGG - chr1_3:4794914-4794933 None:intergenic 15.0%
!!! AAATATTGGATTTTTTTTTC+TGG - chr1_3:4795109-4795128 None:intergenic 15.0%
!! TGATAAAATTCAAATGATTT+AGG + chr1_3:4795351-4795370 Msa0098780:intron 15.0%
!!! ACCAGTTTTTATTTTCTTTT+TGG - chr1_3:4789943-4789962 Msa0098770:intron 20.0%
!! ATAGTTAACAAGAAATATGT+TGG + chr1_3:4790184-4790203 Msa0098780:intron 20.0%
!! TTTATTCACTCTTAATTAGA+CGG + chr1_3:4790367-4790386 Msa0098780:intron 20.0%
!! TTTAAATTATTACGCTACAA+TGG - chr1_3:4790710-4790729 Msa0098770:intron 20.0%
!! GTTTCATTCTATACAAAAAA+AGG + chr1_3:4790749-4790768 Msa0098780:intron 20.0%
!!! TTTTCTTTAACAAAGAATCT+AGG + chr1_3:4790778-4790797 Msa0098780:intron 20.0%
!! TTTCTTTAACAAAGAATCTA+GGG + chr1_3:4790779-4790798 Msa0098780:intron 20.0%
!! AAAAAACAAAAAAGAACTGA+AGG + chr1_3:4791353-4791372 Msa0098780:intron 20.0%
!! AACTAAATAGAAAGATTCAA+AGG + chr1_3:4791377-4791396 Msa0098780:intron 20.0%
!!! TTTTGTATAGTAGTCTTTTA+AGG - chr1_3:4791585-4791604 Msa0098770:intron 20.0%
!! TTATTTCCTTTGTTCATTTA+TGG - chr1_3:4791818-4791837 Msa0098770:intron 20.0%
!!! TTTTGTTGTAACAATTTTTC+CGG - chr1_3:4791994-4792013 Msa0098770:intron 20.0%
!! TATCAAAGTAAAAGTTTGAT+TGG + chr1_3:4792204-4792223 Msa0098780:intron 20.0%
!! ATCAAAGTAAAAGTTTGATT+GGG + chr1_3:4792205-4792224 Msa0098780:intron 20.0%
!!! GTGATCTTTTATTTTATTGA+AGG + chr1_3:4792269-4792288 Msa0098780:intron 20.0%
!! ATGTCAAATTACAAACATAA+TGG - chr1_3:4792346-4792365 Msa0098770:intron 20.0%
!!! TCTAATTAATTTTATTGGCA+AGG + chr1_3:4792589-4792608 Msa0098780:intron 20.0%
!!! ATCACTGGATAATTTAATTT+AGG + chr1_3:4792663-4792682 Msa0098780:intron 20.0%
!! TGAAGTAAGTATTCAAATTT+GGG - chr1_3:4793586-4793605 Msa0098770:intron 20.0%
!! ATGAAGTAAGTATTCAAATT+TGG - chr1_3:4793587-4793606 Msa0098770:intron 20.0%
!!! TATTTTACACTAGAAAAGTT+TGG + chr1_3:4793965-4793984 Msa0098780:intron 20.0%
!! ATTAGGTGAATAAATTAATG+AGG - chr1_3:4794056-4794075 None:intergenic 20.0%
!! ATCATAATATATGCAAAGTT+CGG - chr1_3:4794481-4794500 None:intergenic 20.0%
!! AAATTCCAATATTTAATACG+AGG + chr1_3:4794887-4794906 Msa0098780:intron 20.0%
!!! TTTTTTTTGTTTACAATACG+AGG + chr1_3:4794915-4794934 Msa0098780:intron 20.0%
!! ATTAAAAAAAAAAGAGCTCA+AGG + chr1_3:4794948-4794967 Msa0098780:intron 20.0%
!!! CTTTTTTGCTAAACAAAAAA+AGG - chr1_3:4795044-4795063 None:intergenic 20.0%
!! TTGGATGTTGAATTAAATAT+TGG - chr1_3:4795123-4795142 None:intergenic 20.0%
!! CATTCTTGGATATATATATT+TGG - chr1_3:4795512-4795531 None:intergenic 20.0%
!!! ACCAGTTTTTATTTTCTTTT+TGG - chr1_3:4789943-4789962 Msa0098770:intron 20.0%
!! ATAGTTAACAAGAAATATGT+TGG + chr1_3:4790184-4790203 Msa0098780:intron 20.0%
! GCCAAAAAGAAAATAAAAAC+TGG + chr1_3:4789939-4789958 Msa0098780:CDS 25.0%
! TAGAGATTAACTAATTACCT+TGG - chr1_3:4790075-4790094 Msa0098770:intron 25.0%
! GTTCATCTGAATTTATCTTA+TGG + chr1_3:4790343-4790362 Msa0098780:intron 25.0%
! TTAATTAGACGGACAATTTA+TGG + chr1_3:4790378-4790397 Msa0098780:intron 25.0%
!! TATTGAGATTTTACAGTGAA+GGG + chr1_3:4790410-4790429 Msa0098780:intron 25.0%
!! GTTTTCAATCGACAATTATA+TGG - chr1_3:4790624-4790643 Msa0098770:intron 25.0%
! AAACTATTGATATTACGCTT+CGG + chr1_3:4790640-4790659 Msa0098780:intron 25.0%
! AAATGATGTAACTGAGTTTA+AGG + chr1_3:4790727-4790746 Msa0098780:intron 25.0%
!! ATGTTAGTTTAGAGTATAGT+TGG - chr1_3:4791035-4791054 Msa0098770:intron 25.0%
! TACGTTCAATAATGTATGAT+CGG - chr1_3:4791095-4791114 Msa0098770:intron 25.0%
! TAGATATTTAGAAGTGATGT+GGG - chr1_3:4791159-4791178 Msa0098770:intron 25.0%
! TTAGATATTTAGAAGTGATG+TGG - chr1_3:4791160-4791179 Msa0098770:intron 25.0%
!! ACTTCTAAATATCTAAGACA+TGG + chr1_3:4791164-4791183 Msa0098780:intron 25.0%
! AGTTTCAACCACTAAAAATA+GGG - chr1_3:4791221-4791240 Msa0098770:intron 25.0%
! TAGTTTCAACCACTAAAAAT+AGG - chr1_3:4791222-4791241 Msa0098770:intron 25.0%
!! TATGATATTTGGAGCTTTAA+AGG + chr1_3:4791240-4791259 Msa0098780:intron 25.0%
!!! ATGATATTTGGAGCTTTAAA+GGG + chr1_3:4791241-4791260 Msa0098780:intron 25.0%
! TTTCCTCTCAAGAATATTTA+TGG + chr1_3:4791274-4791293 Msa0098780:intron 25.0%
! TTCCTCTCAAGAATATTTAT+GGG + chr1_3:4791275-4791294 Msa0098780:intron 25.0%
! ATGAACAAAGGAAATAAAAC+TGG + chr1_3:4791821-4791840 Msa0098780:intron 25.0%
!!! CTTTTATTTTATTGAAGGGA+AGG + chr1_3:4792274-4792293 Msa0098780:intron 25.0%
! GTGAATTATATGTATGAAGT+GGG - chr1_3:4792423-4792442 Msa0098770:intron 25.0%
! ACTATGTTTATAAGCTATCT+TGG + chr1_3:4792822-4792841 Msa0098780:intron 25.0%
! AGATTTATAACAATACCTTG+AGG + chr1_3:4792966-4792985 Msa0098780:intron 25.0%
!!! TTTATCAGCATCTTTTAAGA+AGG + chr1_3:4793620-4793639 Msa0098780:intron 25.0%
!!! TTGTTTCATCTTTTAGAAGT+TGG + chr1_3:4793706-4793725 Msa0098780:intron 25.0%
! AGAAATTCAAAACTACAAGA+TGG - chr1_3:4793769-4793788 None:intergenic 25.0%
!! GAATAAATTAATGAGGTGTT+CGG - chr1_3:4794049-4794068 None:intergenic 25.0%
! GCTAACTTATTCTTTCAAAT+AGG + chr1_3:4794088-4794107 Msa0098780:intron 25.0%
!!! ATTTTTTCTCTCCTTCATTT+AGG - chr1_3:4794134-4794153 None:intergenic 25.0%
! CATGTGAATAAACAATATAG+TGG - chr1_3:4794232-4794251 None:intergenic 25.0%
! AGAGTTATTGATAGATACTT+AGG + chr1_3:4794421-4794440 Msa0098780:intron 25.0%
! GAGTTATTGATAGATACTTA+GGG + chr1_3:4794422-4794441 Msa0098780:intron 25.0%
! TCATAATATATGCAAAGTTC+GGG - chr1_3:4794480-4794499 None:intergenic 25.0%
! ACCTTTATAATGTGAATAAG+TGG + chr1_3:4794731-4794750 Msa0098780:intron 25.0%
! CCTTTATAATGTGAATAAGT+GGG + chr1_3:4794732-4794751 Msa0098780:intron 25.0%
! CTTTATAATGTGAATAAGTG+GGG + chr1_3:4794733-4794752 Msa0098780:intron 25.0%
!! AAACAAAAAAAGGATTTGGT+AGG - chr1_3:4795034-4795053 None:intergenic 25.0%
! TGCTAAACAAAAAAAGGATT+TGG - chr1_3:4795038-4795057 None:intergenic 25.0%
! ACATCCAATAATACAACTTA+AGG + chr1_3:4795135-4795154 Msa0098780:intron 25.0%
!! CATACCTTAAGTTGTATTAT+TGG - chr1_3:4795142-4795161 None:intergenic 25.0%
! CAATAATACAACTTAAGGTA+TGG + chr1_3:4795140-4795159 Msa0098780:intron 25.0%
! TTTAATGAAATGTCTCCAAA+AGG - chr1_3:4795264-4795283 None:intergenic 25.0%
! TGTCTAGTGAAATAAATTCA+CGG + chr1_3:4795299-4795318 Msa0098780:intron 25.0%
! TGTATATATAAATGAACGTG+AGG + chr1_3:4795431-4795450 Msa0098780:intron 25.0%
!!! GTATTGGTTGATGAAAAAAA+TGG + chr1_3:4795474-4795493 Msa0098780:intron 25.0%
! GCCAAAAAGAAAATAAAAAC+TGG + chr1_3:4789939-4789958 Msa0098780:CDS 25.0%
! TAGAGATTAACTAATTACCT+TGG - chr1_3:4790075-4790094 Msa0098770:intron 25.0%
TCTTGATACTCATAAGGAAA+AGG + chr1_3:4790271-4790290 Msa0098780:intron 30.0%
CTTGATACTCATAAGGAAAA+GGG + chr1_3:4790272-4790291 Msa0098780:intron 30.0%
CTTCACTGTAAAATCTCAAT+AGG - chr1_3:4790411-4790430 Msa0098770:intron 30.0%
! CTATTGAGATTTTACAGTGA+AGG + chr1_3:4790409-4790428 Msa0098780:intron 30.0%
CATTACACATGCATCTATTA+TGG + chr1_3:4790553-4790572 Msa0098780:intron 30.0%
AACTATTGATATTACGCTTC+GGG + chr1_3:4790641-4790660 Msa0098780:intron 30.0%
GTCTGTTTGATTACAATGAT+AGG + chr1_3:4790801-4790820 Msa0098780:intron 30.0%
GTGGTTGAAACTATGATATT+TGG + chr1_3:4791229-4791248 Msa0098780:intron 30.0%
ACGATTGCAAGATATTTATG+AGG - chr1_3:4791690-4791709 Msa0098770:intron 30.0%
TTCACATAGACAAAGTAGAT+AGG - chr1_3:4791737-4791756 Msa0098770:intron 30.0%
ATCTCACCATAAATGAACAA+AGG + chr1_3:4791809-4791828 Msa0098780:intron 30.0%
AACAAAGGAAATAAAACTGG+TGG + chr1_3:4791824-4791843 Msa0098780:intron 30.0%
! GGAGTAAATTCTAGAAACAA+AGG + chr1_3:4791845-4791864 Msa0098780:intron 30.0%
TACAAGAAATTTGACACAAC+CGG + chr1_3:4791972-4791991 Msa0098780:intron 30.0%
GTCATATATTTCTTATGCTC+AGG - chr1_3:4792046-4792065 Msa0098770:intron 30.0%
ATGATGAATTGAGTAGAAAC+TGG + chr1_3:4792106-4792125 Msa0098780:intron 30.0%
TCTATTCTACTCTACGATAT+TGG - chr1_3:4792236-4792255 Msa0098770:intron 30.0%
TATCGTAGAGTAGAATAGAA+AGG + chr1_3:4792237-4792256 Msa0098780:intron 30.0%
TGATCTTCAACAATAAGAAC+TGG + chr1_3:4792304-4792323 Msa0098780:intron 30.0%
! CTCCTAGCAAATTTTCTATT+TGG + chr1_3:4792380-4792399 Msa0098780:intron 30.0%
! TGCCAAATAGAAAATTTGCT+AGG - chr1_3:4792385-4792404 Msa0098770:intron 30.0%
CGTGAATTATATGTATGAAG+TGG - chr1_3:4792424-4792443 Msa0098770:intron 30.0%
TCCATTTACAAATATGTCCA+AGG + chr1_3:4792495-4792514 Msa0098780:intron 30.0%
TCCTTGGACATATTTGTAAA+TGG - chr1_3:4792499-4792518 Msa0098770:intron 30.0%
GAGAAGTTTATAACATTCCT+TGG - chr1_3:4792515-4792534 Msa0098770:intron 30.0%
ATTAAATTGTTTAGCCGAAC+AGG - chr1_3:4792700-4792719 Msa0098770:intron 30.0%
TTGATGAAGAAGAAAGAACT+CGG - chr1_3:4793181-4793200 Msa0098770:CDS 30.0%
TTGAAGAAGGTGAAATTGTA+GGG - chr1_3:4793241-4793260 Msa0098770:CDS 30.0%
TCATGGAATCAAAGAAAGAA+TGG - chr1_3:4793364-4793383 Msa0098770:CDS 30.0%
GAGATCAAATCAAGAATTCA+TGG - chr1_3:4793381-4793400 Msa0098770:CDS 30.0%
ATGTTGTTGGATTGATGAAA+TGG - chr1_3:4793446-4793465 Msa0098770:CDS 30.0%
GGTAAACTTCAAAATGTTGT+TGG - chr1_3:4793459-4793478 Msa0098770:CDS 30.0%
AATACTTACTTCATCTGATG+TGG + chr1_3:4793593-4793612 Msa0098780:intron 30.0%
GTGTAAGCTCAATAATCAAA+TGG - chr1_3:4793897-4793916 None:intergenic 30.0%
!! ATGAATTGTTTTTCATTCCC+AGG - chr1_3:4793932-4793951 None:intergenic 30.0%
TGAAGATCAACTCTTACATT+TGG - chr1_3:4794019-4794038 None:intergenic 30.0%
AAATAGGTACAATCTCTCTT+TGG + chr1_3:4794357-4794376 Msa0098780:intron 30.0%
AATAGGTACAATCTCTCTTT+GGG + chr1_3:4794358-4794377 Msa0098780:intron 30.0%
!!! ATACTTAGGGAGTCTTTTTT+TGG + chr1_3:4794435-4794454 Msa0098780:intron 30.0%
CATAATATATGCAAAGTTCG+GGG - chr1_3:4794479-4794498 None:intergenic 30.0%
AAAGGTGAATTTCAGTCAAT+AGG - chr1_3:4794717-4794736 None:intergenic 30.0%
CCCACTTATTCACATTATAA+AGG - chr1_3:4794735-4794754 None:intergenic 30.0%
AAGGTCCTCGTATTAAATAT+TGG - chr1_3:4794895-4794914 None:intergenic 30.0%
AAAAAAAAGAGCTCAAGGTA+TGG + chr1_3:4794953-4794972 Msa0098780:intron 30.0%
AAAAAAAGAGCTCAAGGTAT+GGG + chr1_3:4794954-4794973 Msa0098780:intron 30.0%
AAAAACAACAGATAGGGTAT+TGG + chr1_3:4795458-4795477 Msa0098780:intron 30.0%
TCTTGATACTCATAAGGAAA+AGG + chr1_3:4790271-4790290 Msa0098780:intron 30.0%
CTTGATACTCATAAGGAAAA+GGG + chr1_3:4790272-4790291 Msa0098780:intron 30.0%
!!! AGCAGCTTTTTTCTTCTTTG+TGG - chr1_3:4789880-4789899 Msa0098770:intron 35.0%
ACTGAATACGAATACCCAAA+AGG + chr1_3:4789963-4789982 Msa0098780:CDS 35.0%
CTGAATACGAATACCCAAAA+GGG + chr1_3:4789964-4789983 Msa0098780:CDS 35.0%
GCGAATACTATATCCAACTA+GGG + chr1_3:4789992-4790011 Msa0098780:CDS 35.0%
ATACAAACACTACTCCTCTT+TGG + chr1_3:4790030-4790049 Msa0098780:CDS 35.0%
ATGAGTATCAAGACCCTTAT+CGG - chr1_3:4790264-4790283 Msa0098770:intron 35.0%
TAAGGGTCTTGATACTCATA+AGG + chr1_3:4790265-4790284 Msa0098780:intron 35.0%
AGATGCATGTGTAATGCTAT+TGG - chr1_3:4790549-4790568 Msa0098770:intron 35.0%
! AATCTCGTATCGATGTATCA+AGG + chr1_3:4790855-4790874 Msa0098780:intron 35.0%
TAGTTTGGTTGGAAATAGGT+AGG - chr1_3:4791127-4791146 Msa0098770:intron 35.0%
AGGATAGTTTGGTTGGAAAT+AGG - chr1_3:4791131-4791150 Msa0098770:intron 35.0%
TGCTATTCAACCATCATCTA+TGG + chr1_3:4791191-4791210 Msa0098780:intron 35.0%
!!! ATGGCTATCCCTATTTTTAG+TGG + chr1_3:4791210-4791229 Msa0098780:intron 35.0%
!! ATATTTGGAGCTTTAAAGGG+AGG + chr1_3:4791244-4791263 Msa0098780:intron 35.0%
GTCCCATAAATATTCTTGAG+AGG - chr1_3:4791280-4791299 Msa0098770:intron 35.0%
TTATGGGACATTGTAGATGA+AGG + chr1_3:4791291-4791310 Msa0098780:intron 35.0%
AAGATGCATGGAATACATAG+AGG + chr1_3:4791469-4791488 Msa0098780:intron 35.0%
AGACAAAGTAGATAGGTCTT+TGG - chr1_3:4791730-4791749 Msa0098770:intron 35.0%
GATCTTTGCTCATAAATTGC+AGG - chr1_3:4791774-4791793 Msa0098770:intron 35.0%
!! ATCACTTTTCAAATGCTGCA+TGG - chr1_3:4791900-4791919 Msa0098770:intron 35.0%
ATCATGTCGAGAAAGATTGT+CGG + chr1_3:4791922-4791941 Msa0098780:intron 35.0%
TTCTTGTAGTTTCGACATTG+TGG - chr1_3:4791960-4791979 Msa0098770:intron 35.0%
ATTGAGTAGAAACTGGTACT+TGG + chr1_3:4792113-4792132 Msa0098780:intron 35.0%
AGAAACTGGTACTTGGATAA+TGG + chr1_3:4792120-4792139 Msa0098780:intron 35.0%
GAAACTGGTACTTGGATAAT+GGG + chr1_3:4792121-4792140 Msa0098780:intron 35.0%
AAACTGGTACTTGGATAATG+GGG + chr1_3:4792122-4792141 Msa0098780:intron 35.0%
TAATTCACGACTGCATAACA+TGG + chr1_3:4792435-4792454 Msa0098780:intron 35.0%
TATCCAGTGATCAAAGCTTA+AGG - chr1_3:4792654-4792673 Msa0098770:intron 35.0%
TGTATCATGATAAGCGCTTA+TGG - chr1_3:4792735-4792754 Msa0098770:intron 35.0%
TGTCTTGACTCTTAGAACTA+GGG - chr1_3:4792897-4792916 Msa0098770:intron 35.0%
TTGTCTTGACTCTTAGAACT+AGG - chr1_3:4792898-4792917 Msa0098770:intron 35.0%
ATAACAATACCTTGAGGAAG+AGG + chr1_3:4792972-4792991 Msa0098780:intron 35.0%
! TTTGATGATCAACAACTGAG+AGG - chr1_3:4793098-4793117 Msa0098770:intron 35.0%
GTTGAAGAAGGTGAAATTGT+AGG - chr1_3:4793242-4793261 Msa0098770:CDS 35.0%
!!! GCTTCACTTTTTGTTGAAGA+AGG - chr1_3:4793254-4793273 Msa0098770:CDS 35.0%
AAGATCGTGTTATGGTTAAG+TGG - chr1_3:4793295-4793314 Msa0098770:CDS 35.0%
GATTGTAGAAGATCGTGTTA+TGG - chr1_3:4793303-4793322 Msa0098770:intron 35.0%
! TTTTCAACACTCTAACAACG+AGG - chr1_3:4793332-4793351 Msa0098770:intron 35.0%
GGAATCAAAGAAAGAATGGA+AGG - chr1_3:4793360-4793379 Msa0098770:CDS 35.0%
!! GATCATCATGATGGATTCAT+AGG - chr1_3:4793480-4793499 Msa0098770:CDS 35.0%
CATCATCATGATCATCATGA+TGG - chr1_3:4793489-4793508 Msa0098770:CDS 35.0%
CATCATGATGATCATGATGA+TGG + chr1_3:4793487-4793506 Msa0098780:intron 35.0%
TTACACGTTAGAAAATCACC+TGG + chr1_3:4793911-4793930 Msa0098780:intron 35.0%
TACACGTTAGAAAATCACCT+GGG + chr1_3:4793912-4793931 Msa0098780:intron 35.0%
AAAGTTTGGTCAAGTTCAGT+TGG + chr1_3:4793979-4793998 Msa0098780:intron 35.0%
TCATTCCCAAACCTAAATGA+AGG + chr1_3:4794120-4794139 Msa0098780:intron 35.0%
! TCTCTCCTTCATTTAGGTTT+GGG - chr1_3:4794128-4794147 None:intergenic 35.0%
! TTCTCTCCTTCATTTAGGTT+TGG - chr1_3:4794129-4794148 None:intergenic 35.0%
! TACCTATGAGGTATCTATGT+TGG + chr1_3:4794295-4794314 Msa0098780:intron 35.0%
TACATAGTATGCACAGATTG+TGG - chr1_3:4794774-4794793 None:intergenic 35.0%
GAAATGTCTCCAAAAGGATT+TGG - chr1_3:4795258-4795277 None:intergenic 35.0%
ATGTGTGATATTCATGTCAG+TGG + chr1_3:4795407-4795426 Msa0098780:intron 35.0%
TGTGTGATATTCATGTCAGT+GGG + chr1_3:4795408-4795427 Msa0098780:intron 35.0%
AGGACTGAAAAACAACAGAT+AGG + chr1_3:4795451-4795470 Msa0098780:intron 35.0%
GGACTGAAAAACAACAGATA+GGG + chr1_3:4795452-4795471 Msa0098780:intron 35.0%
TCGTTACTTACTCTCATTCT+TGG - chr1_3:4795526-4795545 None:intergenic 35.0%
!!! AGCAGCTTTTTTCTTCTTTG+TGG - chr1_3:4789880-4789899 Msa0098770:intron 35.0%
ACTGAATACGAATACCCAAA+AGG + chr1_3:4789963-4789982 Msa0098780:CDS 35.0%
CTGAATACGAATACCCAAAA+GGG + chr1_3:4789964-4789983 Msa0098780:CDS 35.0%
GCGAATACTATATCCAACTA+GGG + chr1_3:4789992-4790011 Msa0098780:CDS 35.0%
ATACAAACACTACTCCTCTT+TGG + chr1_3:4790030-4790049 Msa0098780:CDS 35.0%
ATGAGTATCAAGACCCTTAT+CGG - chr1_3:4790264-4790283 Msa0098770:intron 35.0%
TAAGGGTCTTGATACTCATA+AGG + chr1_3:4790265-4790284 Msa0098780:intron 35.0%
!!! GCTTTTTTCTTCTTTGTGGC+TGG - chr1_3:4789876-4789895 Msa0098770:intron 40.0%
AGAAGAAAAAAGCTGCTGCT+AGG + chr1_3:4789883-4789902 Msa0098780:CDS 40.0%
GAAGAAAAAAGCTGCTGCTA+GGG + chr1_3:4789884-4789903 Msa0098780:CDS 40.0%
GGCGAATACTATATCCAACT+AGG + chr1_3:4789991-4790010 Msa0098780:CDS 40.0%
CAATCGAAACAAACCCTAGT+TGG - chr1_3:4790008-4790027 Msa0098770:intron 40.0%
CTAATTACCTTGGAACCTGT+AGG - chr1_3:4790065-4790084 Msa0098770:intron 40.0%
ATGAACCAAGAGTGAAAGCT+GGG - chr1_3:4790103-4790122 Msa0098770:intron 40.0%
ACTCATAAGGAAAAGGGCAA+TGG + chr1_3:4790278-4790297 Msa0098780:intron 40.0%
! TGAGATTTTACAGTGAAGGG+TGG + chr1_3:4790413-4790432 Msa0098780:intron 40.0%
TATTACGCTTCGGGAGTAAA+AGG + chr1_3:4790650-4790669 Msa0098780:intron 40.0%
ATTACGCTTCGGGAGTAAAA+GGG + chr1_3:4790651-4790670 Msa0098780:intron 40.0%
CATCGATACGAGATTTAAGC+AGG - chr1_3:4790850-4790869 Msa0098770:intron 40.0%
!! GTGTTTCTGTCTTTGCTGTT+CGG + chr1_3:4790897-4790916 Msa0098780:intron 40.0%
!!! TGTCTTTGCTGTTCGGTTTT+TGG + chr1_3:4790904-4790923 Msa0098780:intron 40.0%
TCTCAAATTGACCGCTTACT+AGG - chr1_3:4790948-4790967 Msa0098770:intron 40.0%
GGATACAAGGATAGTTTGGT+TGG - chr1_3:4791138-4791157 Msa0098770:intron 40.0%
TGTGGGATACAAGGATAGTT+TGG - chr1_3:4791142-4791161 Msa0098770:intron 40.0%
TAGAAGTGATGTGGGATACA+AGG - chr1_3:4791151-4791170 Msa0098770:intron 40.0%
ATAGGGATAGCCATAGATGA+TGG - chr1_3:4791204-4791223 Msa0098770:intron 40.0%
CTACAAGTGTCAAAGATGCA+TGG + chr1_3:4791457-4791476 Msa0098780:intron 40.0%
ATGCATGGAATACATAGAGG+AGG + chr1_3:4791472-4791491 Msa0098780:intron 40.0%
TACATAGAGGAGGAGTTTCA+AGG + chr1_3:4791482-4791501 Msa0098780:intron 40.0%
GCAAGTCAAATGAGATCCTA+CGG + chr1_3:4791616-4791635 Msa0098780:intron 40.0%
! AACTGGTACTTGGATAATGG+GGG + chr1_3:4792123-4792142 Msa0098780:intron 40.0%
CAAAGATCATAGCGTCTTCA+AGG + chr1_3:4792165-4792184 Msa0098780:intron 40.0%
AGGTAAATTAGGGTCCTGTT+CGG + chr1_3:4792683-4792702 Msa0098780:intron 40.0%
CATCATCATGCTTCTCAACA+AGG + chr1_3:4793019-4793038 Msa0098780:intron 40.0%
AAGAACTCGGAGTGTGATTT+CGG - chr1_3:4793168-4793187 Msa0098770:intron 40.0%
AAGCCTAGAGACGAAATTGT+CGG - chr1_3:4793212-4793231 Msa0098770:CDS 40.0%
! TACTCGATGACGAGGTTTTA+AGG + chr1_3:4793416-4793435 Msa0098780:intron 40.0%
TGATGCATACACCATGAATG+TGG - chr1_3:4793520-4793539 Msa0098770:CDS 40.0%
TAAAAATGAGGGCTCATGCT+GGG - chr1_3:4794267-4794286 None:intergenic 40.0%
TTAAAAATGAGGGCTCATGC+TGG - chr1_3:4794268-4794287 None:intergenic 40.0%
!! GTAGCGGGTCTTAAAAATGA+GGG - chr1_3:4794278-4794297 None:intergenic 40.0%
ATAGATACCTCATAGGTAGC+GGG - chr1_3:4794293-4794312 None:intergenic 40.0%
CATAGATACCTCATAGGTAG+CGG - chr1_3:4794294-4794313 None:intergenic 40.0%
CTCCAACATAGATACCTCAT+AGG - chr1_3:4794300-4794319 None:intergenic 40.0%
TTAGACATCTAATGAGCACG+AGG + chr1_3:4794330-4794349 Msa0098780:intron 40.0%
! ATGAGCACGAGGTCTAAAAT+AGG + chr1_3:4794341-4794360 Msa0098780:intron 40.0%
!!! CTTAGGGAGTCTTTTTTTGG+TGG + chr1_3:4794438-4794457 Msa0098780:intron 40.0%
! TGAGCTTAGCTTAGTTGGTA+TGG - chr1_3:4794514-4794533 None:intergenic 40.0%
! TGTCTCCAAAAGGATTTGGT+CGG - chr1_3:4795254-4795273 None:intergenic 40.0%
!!! GCTTTTTTCTTCTTTGTGGC+TGG - chr1_3:4789876-4789895 Msa0098770:intron 40.0%
AGAAGAAAAAAGCTGCTGCT+AGG + chr1_3:4789883-4789902 Msa0098780:CDS 40.0%
GAAGAAAAAAGCTGCTGCTA+GGG + chr1_3:4789884-4789903 Msa0098780:CDS 40.0%
GGCGAATACTATATCCAACT+AGG + chr1_3:4789991-4790010 Msa0098780:CDS 40.0%
CAATCGAAACAAACCCTAGT+TGG - chr1_3:4790008-4790027 Msa0098770:intron 40.0%
CTAATTACCTTGGAACCTGT+AGG - chr1_3:4790065-4790084 Msa0098770:intron 40.0%
ATGAACCAAGAGTGAAAGCT+GGG - chr1_3:4790103-4790122 Msa0098770:intron 40.0%
ACTCATAAGGAAAAGGGCAA+TGG + chr1_3:4790278-4790297 Msa0098780:intron 40.0%
TTCTTCTTTGTGGCTGGAAC+TGG - chr1_3:4789870-4789889 Msa0098770:intron 45.0%
ACGAATACCCAAAAGGGCAA+TGG + chr1_3:4789970-4789989 Msa0098780:CDS 45.0%
! GTATTCGCCATTGCCCTTTT+GGG - chr1_3:4789980-4789999 Msa0098770:intron 45.0%
! AGTATTCGCCATTGCCCTTT+TGG - chr1_3:4789981-4790000 Msa0098770:intron 45.0%
CAAACACTACTCCTCTTTGG+AGG + chr1_3:4790033-4790052 Msa0098780:CDS 45.0%
TGAACCAAGAGTGAAAGCTG+GGG - chr1_3:4790102-4790121 Msa0098770:intron 45.0%
CATGAACCAAGAGTGAAAGC+TGG - chr1_3:4790104-4790123 Msa0098770:intron 45.0%
GAAGAGGCAAAAGCCGATAA+GGG + chr1_3:4790248-4790267 Msa0098780:CDS 45.0%
GGGAGTAAAAGGGAATCTAG+CGG + chr1_3:4790661-4790680 Msa0098780:intron 45.0%
TTGCACAAGTGCCTAGTAAG+CGG + chr1_3:4790934-4790953 Msa0098780:intron 45.0%
TCGGCATAGCTATGATGTCA+CGG - chr1_3:4791076-4791095 Msa0098770:intron 45.0%
TGTCGGAATATCATCTCCGT+AGG - chr1_3:4791635-4791654 Msa0098770:intron 45.0%
! CTGCCTTAAGCTTTGATCAC+TGG + chr1_3:4792648-4792667 Msa0098780:intron 45.0%
GGTCTGCTTCACATGTTCAT+AGG - chr1_3:4792876-4792895 Msa0098770:intron 45.0%
ACTAAAGAGCCTCTTCCTCA+AGG - chr1_3:4792984-4793003 Msa0098770:CDS 45.0%
TGATTGTCGTGCATTTCTCG+TGG - chr1_3:4793069-4793088 Msa0098770:CDS 45.0%
TGATTTCGGTGGTTGGAATG+GGG - chr1_3:4793154-4793173 Msa0098770:intron 45.0%
GTGATTTCGGTGGTTGGAAT+GGG - chr1_3:4793155-4793174 Msa0098770:intron 45.0%
TGTGATTTCGGTGGTTGGAA+TGG - chr1_3:4793156-4793175 Msa0098770:intron 45.0%
! AGACGAAATTGTCGGTTGGT+TGG - chr1_3:4793204-4793223 Msa0098770:CDS 45.0%
CTAGAGACGAAATTGTCGGT+TGG - chr1_3:4793208-4793227 Msa0098770:CDS 45.0%
CAACCGACAATTTCGTCTCT+AGG + chr1_3:4793206-4793225 Msa0098780:intron 45.0%
AAAAGTGAAGCCAGTCGATC+AGG + chr1_3:4793263-4793282 Msa0098780:intron 45.0%
! ATGGTGATGAGCCACATTCA+TGG + chr1_3:4793506-4793525 Msa0098780:intron 45.0%
!! GGTAGCGGGTCTTAAAAATG+AGG - chr1_3:4794279-4794298 None:intergenic 45.0%
! TTTAAGACCCGCTACCTATG+AGG + chr1_3:4794283-4794302 Msa0098780:intron 45.0%
!!! AGGGAGTCTTTTTTTGGTGG+TGG + chr1_3:4794441-4794460 Msa0098780:intron 45.0%
!!! AGTCTTTTTTTGGTGGTGGC+CGG + chr1_3:4794445-4794464 Msa0098780:intron 45.0%
CACAGATTGTGGTTCGAACT+TGG - chr1_3:4794763-4794782 None:intergenic 45.0%
! ACATGCCGACCAAATCCTTT+TGG + chr1_3:4795246-4795265 Msa0098780:intron 45.0%
TTCTTCTTTGTGGCTGGAAC+TGG - chr1_3:4789870-4789889 Msa0098770:intron 45.0%
ACGAATACCCAAAAGGGCAA+TGG + chr1_3:4789970-4789989 Msa0098780:CDS 45.0%
! GTATTCGCCATTGCCCTTTT+GGG - chr1_3:4789980-4789999 Msa0098770:intron 45.0%
! AGTATTCGCCATTGCCCTTT+TGG - chr1_3:4789981-4790000 Msa0098770:intron 45.0%
CAAACACTACTCCTCTTTGG+AGG + chr1_3:4790033-4790052 Msa0098780:CDS 45.0%
TGAACCAAGAGTGAAAGCTG+GGG - chr1_3:4790102-4790121 Msa0098770:intron 45.0%
CATGAACCAAGAGTGAAAGC+TGG - chr1_3:4790104-4790123 Msa0098770:intron 45.0%
GAAGAGGCAAAAGCCGATAA+GGG + chr1_3:4790248-4790267 Msa0098780:CDS 45.0%
!! TTAATTAGAAATTAAATTTA+AGG - chr1_3:4792578-4792597 Msa0098770:intron 5.0%
!!! TAATTTCTAATTAATTTTAT+TGG + chr1_3:4792584-4792603 Msa0098780:intron 5.0%
GTAGGATCACTCCTCCAAAG+AGG - chr1_3:4790047-4790066 Msa0098770:intron 50.0%
! CTTTGGAGGAGTGATCCTAC+AGG + chr1_3:4790047-4790066 Msa0098780:CDS 50.0%
GAGTGATCCTACAGGTTCCA+AGG + chr1_3:4790055-4790074 Msa0098780:CDS 50.0%
TTCTCCCCAGCTTTCACTCT+TGG + chr1_3:4790095-4790114 Msa0098780:intron 50.0%
CAGTCGTTGTGCAATGCATG+TGG + chr1_3:4790209-4790228 Msa0098780:intron 50.0%
ATGTGGACTCCGACGAAGAA+GGG + chr1_3:4790226-4790245 Msa0098780:CDS 50.0%
TTGCCTCTTCCCTTCTTCGT+CGG - chr1_3:4790238-4790257 Msa0098770:intron 50.0%
GGAAGAGGCAAAAGCCGATA+AGG + chr1_3:4790247-4790266 Msa0098780:CDS 50.0%
GGGGGTAGCTAGTAATCACA+TGG + chr1_3:4792141-4792160 Msa0098780:intron 50.0%
ATTTCGGTGGTTGGAATGGG+GGG - chr1_3:4793152-4793171 Msa0098770:intron 50.0%
GATTTCGGTGGTTGGAATGG+GGG - chr1_3:4793153-4793172 Msa0098770:intron 50.0%
AACTCGGAGTGTGATTTCGG+TGG - chr1_3:4793165-4793184 Msa0098770:intron 50.0%
!!! GTCTTTTTTTGGTGGTGGCC+GGG + chr1_3:4794446-4794465 Msa0098780:intron 50.0%
!!! TCTTTTTTTGGTGGTGGCCG+GGG + chr1_3:4794447-4794466 Msa0098780:intron 50.0%
CCTCGTGAGCTTAGCTTAGT+TGG - chr1_3:4794519-4794538 None:intergenic 50.0%
CCAACTAAGCTAAGCTCACG+AGG + chr1_3:4794516-4794535 Msa0098780:intron 50.0%
GTAGGATCACTCCTCCAAAG+AGG - chr1_3:4790047-4790066 Msa0098770:intron 50.0%
! CTTTGGAGGAGTGATCCTAC+AGG + chr1_3:4790047-4790066 Msa0098780:CDS 50.0%
GAGTGATCCTACAGGTTCCA+AGG + chr1_3:4790055-4790074 Msa0098780:CDS 50.0%
TTCTCCCCAGCTTTCACTCT+TGG + chr1_3:4790095-4790114 Msa0098780:intron 50.0%
CAGTCGTTGTGCAATGCATG+TGG + chr1_3:4790209-4790228 Msa0098780:intron 50.0%
ATGTGGACTCCGACGAAGAA+GGG + chr1_3:4790226-4790245 Msa0098780:CDS 50.0%
TTGCCTCTTCCCTTCTTCGT+CGG - chr1_3:4790238-4790257 Msa0098770:intron 50.0%
GGAAGAGGCAAAAGCCGATA+AGG + chr1_3:4790247-4790266 Msa0098780:CDS 50.0%
CATGTGGACTCCGACGAAGA+AGG + chr1_3:4790225-4790244 Msa0098780:CDS 55.0%
ACTCCGACGAAGAAGGGAAG+AGG + chr1_3:4790232-4790251 Msa0098780:CDS 55.0%
TGGCGAACGCTCATCATCTG+AGG + chr1_3:4790298-4790317 Msa0098780:intron 55.0%
TGGTTGGAATGGGGGGACTT+GGG - chr1_3:4793145-4793164 Msa0098770:intron 55.0%
CGGAGTGTGATTTCGGTGGT+TGG - chr1_3:4793161-4793180 Msa0098770:intron 55.0%
TCACACGCTACTCGATGACG+AGG + chr1_3:4793408-4793427 Msa0098780:intron 55.0%
AATGAGGGCTCATGCTGGGA+TGG - chr1_3:4794263-4794282 None:intergenic 55.0%
AAAGTTCGGGGTTCGAACCC+CGG - chr1_3:4794467-4794486 None:intergenic 55.0%
GGCGTTTCGCATACGTTGCT+TGG + chr1_3:4795320-4795339 Msa0098780:intron 55.0%
CATGTGGACTCCGACGAAGA+AGG + chr1_3:4790225-4790244 Msa0098780:CDS 55.0%
ACTCCGACGAAGAAGGGAAG+AGG + chr1_3:4790232-4790251 Msa0098780:CDS 55.0%
TGGCGAACGCTCATCATCTG+AGG + chr1_3:4790298-4790317 Msa0098780:intron 55.0%
GTGGTTGGAATGGGGGGACT+TGG - chr1_3:4793146-4793165 Msa0098770:intron 60.0%
GTGGCGTGATCCTGATCGAC+TGG - chr1_3:4793276-4793295 Msa0098770:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 4789846 4796039 4789846 ID=Msa0098780;Name=Msa0098780
chr1_3 mRNA 4789846 4796039 4789846 ID=Msa0098780-mRNA-1;Parent=Msa0098780;Name=Msa0098780-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0|0|1|0.66|0.5|4|0|211
chr1_3 exon 4789846 4790076 4789846 ID=Msa0098780-mRNA-1:exon:1706;Parent=Msa0098780-mRNA-1
chr1_3 exon 4790212 4790269 4790212 ID=Msa0098780-mRNA-1:exon:1707;Parent=Msa0098780-mRNA-1
chr1_3 exon 4795554 4795759 4795554 ID=Msa0098780-mRNA-1:exon:1708;Parent=Msa0098780-mRNA-1
chr1_3 exon 4795899 4796039 4795899 ID=Msa0098780-mRNA-1:exon:1709;Parent=Msa0098780-mRNA-1
chr1_3 CDS 4789846 4790076 4789846 ID=Msa0098780-mRNA-1:cds;Parent=Msa0098780-mRNA-1
chr1_3 CDS 4790212 4790269 4790212 ID=Msa0098780-mRNA-1:cds;Parent=Msa0098780-mRNA-1
chr1_3 CDS 4795554 4795759 4795554 ID=Msa0098780-mRNA-1:cds;Parent=Msa0098780-mRNA-1
chr1_3 CDS 4795899 4796039 4795899 ID=Msa0098780-mRNA-1:cds;Parent=Msa0098780-mRNA-1
Gene Sequence

>Msa0098780

ATGAGAGTAAGTAACGATGATCCAGTTCCAGCCACAAAGAAGAAAAAAGCTGCTGCTAGGGCTACAAAAAAGAAGAAAACAGCTGCTAGTGCTGCCAAAAAGAAAATAAAAACTGGTACTGAATACGAATACCCAAAAGGGCAATGGCGAATACTATATCCAACTAGGGTTTGTTTCGATTGCAATACAAACACTACTCCTCTTTGGAGGAGTGATCCTACAGGTTCCAAGTCGTTGTGCAATGCATGTGGACTCCGACGAAGAAGGGAAGAGGCAAAAGCCGATAAGGTTCCAGCCACAAAGAAGAAAAAAGCTGCTGCTAGGGCTACAAAAAAGAAGAAAACAGCTGCTAGTGCTGCCAAAAAGAAAATAAAAACTGGTACTGAATACGAATACCCAAAAGGGCAATGGCGAATACTATATCCAACTAGGGTTTGTTTCGATTGCAATACAAACACTACTCCTCTTTGGAGGAGTGATCCTACAGGTTCCAAGTCGTTGTGCAATGCATGTGGACTCCGACGAAGAAGGGAAGAGGCAAAAGCCGATAAGGGTCTTGATACTCATAAGGAAAAGGGCAATGGCGAACGCTCATCATCTGAGGATGTGAAGATTAATGTTTTAATGTTCATCTGA

Protein sequence

>Msa0098780

MRVSNDDPVPATKKKKAAARATKKKKTAASAAKKKIKTGTEYEYPKGQWRILYPTRVCFDCNTNTTPLWRSDPTGSKSLCNACGLRRRREEAKADKVPATKKKKAAARATKKKKTAASAAKKKIKTGTEYEYPKGQWRILYPTRVCFDCNTNTTPLWRSDPTGSKSLCNACGLRRRREEAKADKGLDTHKEKGNGERSSSEDVKINVLMFI*