Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0098780 | AES59248.1 | 55.556 | 99 | 33 | 3 | 9 | 96 | 2 | 100 | 2.32e-16 | 82.4 |
| Msa0098780 | AES59248.1 | 56.311 | 103 | 34 | 3 | 97 | 188 | 2 | 104 | 3.42e-19 | 89.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0098780 | sp|Q5HZ36|GAT21_ARATH | 49.231 | 65 | 29 | 1 | 25 | 89 | 203 | 263 | 5.42e-11 | 64.3 |
| Msa0098780 | sp|Q5HZ36|GAT21_ARATH | 49.231 | 65 | 29 | 1 | 113 | 177 | 203 | 263 | 5.42e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0098780 | G7I9Y7 | 55.556 | 99 | 33 | 3 | 9 | 96 | 2 | 100 | 1.11e-16 | 82.4 |
| Msa0098780 | G7I9Y7 | 56.311 | 103 | 34 | 3 | 97 | 188 | 2 | 104 | 1.63e-19 | 89.7 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0098780 | TF | C2C2-GATA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0098780 | MtrunA17_Chr1g0151471 | 56.311 | 103 | 34 | 3 | 97 | 188 | 2 | 104 | 3.15e-23 | 89.7 |
| Msa0098780 | MtrunA17_Chr1g0151471 | 55.556 | 99 | 33 | 3 | 9 | 96 | 2 | 100 | 2.14e-20 | 82.4 |
| Msa0098780 | MtrunA17_Chr1g0151461 | 61.224 | 49 | 16 | 1 | 143 | 188 | 186 | 234 | 5.13e-12 | 63.5 |
| Msa0098780 | MtrunA17_Chr1g0151461 | 43.421 | 76 | 31 | 1 | 55 | 130 | 186 | 249 | 3.10e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0098780 | AT5G56860.1 | 49.231 | 65 | 29 | 1 | 25 | 89 | 203 | 263 | 5.51e-12 | 64.3 |
| Msa0098780 | AT5G56860.1 | 49.231 | 65 | 29 | 1 | 113 | 177 | 203 | 263 | 5.51e-12 | 64.3 |
Find 48 sgRNAs with CRISPR-Local
Find 345 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTCTTTGTGGCTGGAAC+TGG | 0.239072 | 1_3:-4789867 | Msa0098770:intron |
| AGTATTCGCCATTGCCCTTT+TGG | 0.253039 | 1_3:-4789978 | Msa0098770:intron |
| AGTATTCGCCATTGCCCTTT+TGG | 0.253039 | 1_3:-4795661 | None:intergenic |
| ATGAGTATCAAGACCCTTAT+CGG | 0.303482 | 1_3:-4790261 | Msa0098770:intron |
| ATGAGTATCAAGACCCTTAT+CGG | 0.303482 | 1_3:-4795948 | None:intergenic |
| ATACAAACACTACTCCTCTT+TGG | 0.387924 | 1_3:+4790030 | Msa0098780:CDS |
| ATACAAACACTACTCCTCTT+TGG | 0.387924 | 1_3:+4795713 | Msa0098780:CDS |
| GGAAGAGGCAAAAGCCGATA+AGG | 0.448770 | 1_3:+4790247 | Msa0098780:CDS |
| GGAAGAGGCAAAAGCCGATA+AGG | 0.448770 | 1_3:+4795934 | Msa0098780:CDS |
| CAATCGAAACAAACCCTAGT+TGG | 0.460017 | 1_3:-4790005 | Msa0098770:intron |
| CAATCGAAACAAACCCTAGT+TGG | 0.460017 | 1_3:-4795688 | None:intergenic |
| TCTTGATACTCATAAGGAAA+AGG | 0.465163 | 1_3:+4795958 | Msa0098780:CDS |
| TTGCCTCTTCCCTTCTTCGT+CGG | 0.477939 | 1_3:-4790235 | Msa0098770:intron |
| TTGCCTCTTCCCTTCTTCGT+CGG | 0.477939 | 1_3:-4795922 | None:intergenic |
| CTTGATACTCATAAGGAAAA+GGG | 0.489428 | 1_3:+4795959 | Msa0098780:CDS |
| TAAGGGTCTTGATACTCATA+AGG | 0.492473 | 1_3:+4795952 | Msa0098780:CDS |
| ACTGAATACGAATACCCAAA+AGG | 0.517161 | 1_3:+4789963 | Msa0098780:CDS |
| ACTGAATACGAATACCCAAA+AGG | 0.517161 | 1_3:+4795646 | Msa0098780:CDS |
| GAAGAGGCAAAAGCCGATAA+GGG | 0.529120 | 1_3:+4790248 | Msa0098780:CDS |
| GAAGAGGCAAAAGCCGATAA+GGG | 0.529120 | 1_3:+4795935 | Msa0098780:CDS |
| CTGAATACGAATACCCAAAA+GGG | 0.529249 | 1_3:+4789964 | Msa0098780:CDS |
| CTGAATACGAATACCCAAAA+GGG | 0.529249 | 1_3:+4795647 | Msa0098780:CDS |
| ATGTGGACTCCGACGAAGAA+GGG | 0.540307 | 1_3:+4790226 | Msa0098780:CDS |
| ATGTGGACTCCGACGAAGAA+GGG | 0.540307 | 1_3:+4795913 | Msa0098780:CDS |
| CTTTGGAGGAGTGATCCTAC+AGG | 0.546346 | 1_3:+4790047 | Msa0098780:CDS |
| CTTTGGAGGAGTGATCCTAC+AGG | 0.546346 | 1_3:+4795730 | Msa0098780:CDS |
| GGCGAATACTATATCCAACT+AGG | 0.572160 | 1_3:+4789991 | Msa0098780:CDS |
| GGCGAATACTATATCCAACT+AGG | 0.572160 | 1_3:+4795674 | Msa0098780:CDS |
| CATGTGGACTCCGACGAAGA+AGG | 0.573346 | 1_3:+4790225 | Msa0098780:CDS |
| CATGTGGACTCCGACGAAGA+AGG | 0.573346 | 1_3:+4795912 | Msa0098780:CDS |
| GAGTGATCCTACAGGTTCCA+AGG | 0.583772 | 1_3:+4790055 | Msa0098780:CDS |
| GAGTGATCCTACAGGTTCCA+AGG | 0.583772 | 1_3:+4795738 | Msa0098780:CDS |
| ACTCCGACGAAGAAGGGAAG+AGG | 0.589069 | 1_3:+4790232 | Msa0098780:CDS |
| ACTCCGACGAAGAAGGGAAG+AGG | 0.589069 | 1_3:+4795919 | Msa0098780:CDS |
| CAAACACTACTCCTCTTTGG+AGG | 0.592172 | 1_3:+4790033 | Msa0098780:CDS |
| CAAACACTACTCCTCTTTGG+AGG | 0.592172 | 1_3:+4795716 | Msa0098780:CDS |
| GCGAATACTATATCCAACTA+GGG | 0.606852 | 1_3:+4789992 | Msa0098780:CDS |
| GCGAATACTATATCCAACTA+GGG | 0.606852 | 1_3:+4795675 | Msa0098780:CDS |
| CAGTCGTTGTGCAATGCATG+TGG | 0.610062 | 1_3:+4790209 | Msa0098780:intron |
| CAGTCGTTGTGCAATGCATG+TGG | 0.610062 | 1_3:+4795896 | Msa0098780:intron |
| ACGAATACCCAAAAGGGCAA+TGG | 0.610371 | 1_3:+4789970 | Msa0098780:CDS |
| ACGAATACCCAAAAGGGCAA+TGG | 0.610371 | 1_3:+4795653 | Msa0098780:CDS |
| ACTCATAAGGAAAAGGGCAA+TGG | 0.616678 | 1_3:+4795965 | Msa0098780:CDS |
| TGGCGAACGCTCATCATCTG+AGG | 0.618644 | 1_3:+4795985 | Msa0098780:CDS |
| CTAATTACCTTGGAACCTGT+AGG | 0.621221 | 1_3:-4790062 | Msa0098770:intron |
| CTAATTACCTTGGAACCTGT+AGG | 0.621221 | 1_3:-4795745 | None:intergenic |
| GTAGGATCACTCCTCCAAAG+AGG | 0.666474 | 1_3:-4790044 | Msa0098770:intron |
| GTAGGATCACTCCTCCAAAG+AGG | 0.666474 | 1_3:-4795727 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTAAAAAAAAAAATTTA+AGG | + | chr1_3:4795165-4795184 | Msa0098780:intron | 0.0% |
| !!! | GTTTTTAAATAAAAAATAAG+TGG | + | chr1_3:4790465-4790484 | Msa0098780:intron | 10.0% |
| !!! | TAATTTAATTTAGGTAAATT+AGG | + | chr1_3:4792672-4792691 | Msa0098780:intron | 10.0% |
| !!! | AATTTAATTTAGGTAAATTA+GGG | + | chr1_3:4792673-4792692 | Msa0098780:intron | 10.0% |
| !! | TTGTTAAAAAAAAAATACAT+AGG | - | chr1_3:4794690-4794709 | None:intergenic | 10.0% |
| !!! | CTTTTTTTTTTAATAAACTT+AGG | - | chr1_3:4794942-4794961 | None:intergenic | 10.0% |
| !!! | AAAAAAAAAAATTTAAGGTA+TGG | + | chr1_3:4795170-4795189 | Msa0098780:intron | 10.0% |
| !! | AATATCTTGAAAAAAATAAA+CGG | + | chr1_3:4795221-4795240 | Msa0098780:intron | 10.0% |
| !!! | TTTATTTTTTTCTACTTTTA+GGG | - | chr1_3:4795382-4795401 | None:intergenic | 10.0% |
| !!! | TTTTATTTTTTTCTACTTTT+AGG | - | chr1_3:4795383-4795402 | None:intergenic | 10.0% |
| !! | TATTATGGTGAATTAAATAA+AGG | + | chr1_3:4790568-4790587 | Msa0098780:intron | 15.0% |
| !! | TTTCATTCTATACAAAAAAA+GGG | + | chr1_3:4790750-4790769 | Msa0098780:intron | 15.0% |
| !! | TAATATCTTTCAAAGAATAA+TGG | + | chr1_3:4791431-4791450 | Msa0098780:intron | 15.0% |
| !! | AATATCTTTCAAAGAATAAT+GGG | + | chr1_3:4791432-4791451 | Msa0098780:intron | 15.0% |
| !! | ACTATACAAAATAAAAGAAT+TGG | + | chr1_3:4791594-4791613 | Msa0098780:intron | 15.0% |
| !!! | TTTCTCAAAAATTATTTTGT+CGG | - | chr1_3:4791652-4791671 | Msa0098770:intron | 15.0% |
| !!! | TGATCTTTTATTTTATTGAA+GGG | + | chr1_3:4792270-4792289 | Msa0098780:intron | 15.0% |
| !!! | GAAATTAAATTTAAGGTAAA+CGG | - | chr1_3:4792571-4792590 | Msa0098770:intron | 15.0% |
| !!! | TATAAATCTCTCATTATTTT+AGG | - | chr1_3:4792955-4792974 | Msa0098770:intron | 15.0% |
| !! | TTAGCAAAAAAGATTATATT+AGG | - | chr1_3:4794073-4794092 | None:intergenic | 15.0% |
| !!! | ATTTTAATCTTAAAAGAAGT+GGG | - | chr1_3:4794385-4794404 | None:intergenic | 15.0% |
| !!! | TATTTTAATCTTAAAAGAAG+TGG | - | chr1_3:4794386-4794405 | None:intergenic | 15.0% |
| !!! | AACATAGTTTTTTTTTTCAT+TGG | + | chr1_3:4794642-4794661 | Msa0098780:intron | 15.0% |
| !! | ATATCTTATAATTGAGAATA+TGG | + | chr1_3:4794825-4794844 | Msa0098780:intron | 15.0% |
| !! | GTATTGTAAACAAAAAAAAA+AGG | - | chr1_3:4794914-4794933 | None:intergenic | 15.0% |
| !!! | AAATATTGGATTTTTTTTTC+TGG | - | chr1_3:4795109-4795128 | None:intergenic | 15.0% |
| !! | TGATAAAATTCAAATGATTT+AGG | + | chr1_3:4795351-4795370 | Msa0098780:intron | 15.0% |
| !!! | ACCAGTTTTTATTTTCTTTT+TGG | - | chr1_3:4789943-4789962 | Msa0098770:intron | 20.0% |
| !! | ATAGTTAACAAGAAATATGT+TGG | + | chr1_3:4790184-4790203 | Msa0098780:intron | 20.0% |
| !! | TTTATTCACTCTTAATTAGA+CGG | + | chr1_3:4790367-4790386 | Msa0098780:intron | 20.0% |
| !! | TTTAAATTATTACGCTACAA+TGG | - | chr1_3:4790710-4790729 | Msa0098770:intron | 20.0% |
| !! | GTTTCATTCTATACAAAAAA+AGG | + | chr1_3:4790749-4790768 | Msa0098780:intron | 20.0% |
| !!! | TTTTCTTTAACAAAGAATCT+AGG | + | chr1_3:4790778-4790797 | Msa0098780:intron | 20.0% |
| !! | TTTCTTTAACAAAGAATCTA+GGG | + | chr1_3:4790779-4790798 | Msa0098780:intron | 20.0% |
| !! | AAAAAACAAAAAAGAACTGA+AGG | + | chr1_3:4791353-4791372 | Msa0098780:intron | 20.0% |
| !! | AACTAAATAGAAAGATTCAA+AGG | + | chr1_3:4791377-4791396 | Msa0098780:intron | 20.0% |
| !!! | TTTTGTATAGTAGTCTTTTA+AGG | - | chr1_3:4791585-4791604 | Msa0098770:intron | 20.0% |
| !! | TTATTTCCTTTGTTCATTTA+TGG | - | chr1_3:4791818-4791837 | Msa0098770:intron | 20.0% |
| !!! | TTTTGTTGTAACAATTTTTC+CGG | - | chr1_3:4791994-4792013 | Msa0098770:intron | 20.0% |
| !! | TATCAAAGTAAAAGTTTGAT+TGG | + | chr1_3:4792204-4792223 | Msa0098780:intron | 20.0% |
| !! | ATCAAAGTAAAAGTTTGATT+GGG | + | chr1_3:4792205-4792224 | Msa0098780:intron | 20.0% |
| !!! | GTGATCTTTTATTTTATTGA+AGG | + | chr1_3:4792269-4792288 | Msa0098780:intron | 20.0% |
| !! | ATGTCAAATTACAAACATAA+TGG | - | chr1_3:4792346-4792365 | Msa0098770:intron | 20.0% |
| !!! | TCTAATTAATTTTATTGGCA+AGG | + | chr1_3:4792589-4792608 | Msa0098780:intron | 20.0% |
| !!! | ATCACTGGATAATTTAATTT+AGG | + | chr1_3:4792663-4792682 | Msa0098780:intron | 20.0% |
| !! | TGAAGTAAGTATTCAAATTT+GGG | - | chr1_3:4793586-4793605 | Msa0098770:intron | 20.0% |
| !! | ATGAAGTAAGTATTCAAATT+TGG | - | chr1_3:4793587-4793606 | Msa0098770:intron | 20.0% |
| !!! | TATTTTACACTAGAAAAGTT+TGG | + | chr1_3:4793965-4793984 | Msa0098780:intron | 20.0% |
| !! | ATTAGGTGAATAAATTAATG+AGG | - | chr1_3:4794056-4794075 | None:intergenic | 20.0% |
| !! | ATCATAATATATGCAAAGTT+CGG | - | chr1_3:4794481-4794500 | None:intergenic | 20.0% |
| !! | AAATTCCAATATTTAATACG+AGG | + | chr1_3:4794887-4794906 | Msa0098780:intron | 20.0% |
| !!! | TTTTTTTTGTTTACAATACG+AGG | + | chr1_3:4794915-4794934 | Msa0098780:intron | 20.0% |
| !! | ATTAAAAAAAAAAGAGCTCA+AGG | + | chr1_3:4794948-4794967 | Msa0098780:intron | 20.0% |
| !!! | CTTTTTTGCTAAACAAAAAA+AGG | - | chr1_3:4795044-4795063 | None:intergenic | 20.0% |
| !! | TTGGATGTTGAATTAAATAT+TGG | - | chr1_3:4795123-4795142 | None:intergenic | 20.0% |
| !! | CATTCTTGGATATATATATT+TGG | - | chr1_3:4795512-4795531 | None:intergenic | 20.0% |
| !!! | ACCAGTTTTTATTTTCTTTT+TGG | - | chr1_3:4789943-4789962 | Msa0098770:intron | 20.0% |
| !! | ATAGTTAACAAGAAATATGT+TGG | + | chr1_3:4790184-4790203 | Msa0098780:intron | 20.0% |
| ! | GCCAAAAAGAAAATAAAAAC+TGG | + | chr1_3:4789939-4789958 | Msa0098780:CDS | 25.0% |
| ! | TAGAGATTAACTAATTACCT+TGG | - | chr1_3:4790075-4790094 | Msa0098770:intron | 25.0% |
| ! | GTTCATCTGAATTTATCTTA+TGG | + | chr1_3:4790343-4790362 | Msa0098780:intron | 25.0% |
| ! | TTAATTAGACGGACAATTTA+TGG | + | chr1_3:4790378-4790397 | Msa0098780:intron | 25.0% |
| !! | TATTGAGATTTTACAGTGAA+GGG | + | chr1_3:4790410-4790429 | Msa0098780:intron | 25.0% |
| !! | GTTTTCAATCGACAATTATA+TGG | - | chr1_3:4790624-4790643 | Msa0098770:intron | 25.0% |
| ! | AAACTATTGATATTACGCTT+CGG | + | chr1_3:4790640-4790659 | Msa0098780:intron | 25.0% |
| ! | AAATGATGTAACTGAGTTTA+AGG | + | chr1_3:4790727-4790746 | Msa0098780:intron | 25.0% |
| !! | ATGTTAGTTTAGAGTATAGT+TGG | - | chr1_3:4791035-4791054 | Msa0098770:intron | 25.0% |
| ! | TACGTTCAATAATGTATGAT+CGG | - | chr1_3:4791095-4791114 | Msa0098770:intron | 25.0% |
| ! | TAGATATTTAGAAGTGATGT+GGG | - | chr1_3:4791159-4791178 | Msa0098770:intron | 25.0% |
| ! | TTAGATATTTAGAAGTGATG+TGG | - | chr1_3:4791160-4791179 | Msa0098770:intron | 25.0% |
| !! | ACTTCTAAATATCTAAGACA+TGG | + | chr1_3:4791164-4791183 | Msa0098780:intron | 25.0% |
| ! | AGTTTCAACCACTAAAAATA+GGG | - | chr1_3:4791221-4791240 | Msa0098770:intron | 25.0% |
| ! | TAGTTTCAACCACTAAAAAT+AGG | - | chr1_3:4791222-4791241 | Msa0098770:intron | 25.0% |
| !! | TATGATATTTGGAGCTTTAA+AGG | + | chr1_3:4791240-4791259 | Msa0098780:intron | 25.0% |
| !!! | ATGATATTTGGAGCTTTAAA+GGG | + | chr1_3:4791241-4791260 | Msa0098780:intron | 25.0% |
| ! | TTTCCTCTCAAGAATATTTA+TGG | + | chr1_3:4791274-4791293 | Msa0098780:intron | 25.0% |
| ! | TTCCTCTCAAGAATATTTAT+GGG | + | chr1_3:4791275-4791294 | Msa0098780:intron | 25.0% |
| ! | ATGAACAAAGGAAATAAAAC+TGG | + | chr1_3:4791821-4791840 | Msa0098780:intron | 25.0% |
| !!! | CTTTTATTTTATTGAAGGGA+AGG | + | chr1_3:4792274-4792293 | Msa0098780:intron | 25.0% |
| ! | GTGAATTATATGTATGAAGT+GGG | - | chr1_3:4792423-4792442 | Msa0098770:intron | 25.0% |
| ! | ACTATGTTTATAAGCTATCT+TGG | + | chr1_3:4792822-4792841 | Msa0098780:intron | 25.0% |
| ! | AGATTTATAACAATACCTTG+AGG | + | chr1_3:4792966-4792985 | Msa0098780:intron | 25.0% |
| !!! | TTTATCAGCATCTTTTAAGA+AGG | + | chr1_3:4793620-4793639 | Msa0098780:intron | 25.0% |
| !!! | TTGTTTCATCTTTTAGAAGT+TGG | + | chr1_3:4793706-4793725 | Msa0098780:intron | 25.0% |
| ! | AGAAATTCAAAACTACAAGA+TGG | - | chr1_3:4793769-4793788 | None:intergenic | 25.0% |
| !! | GAATAAATTAATGAGGTGTT+CGG | - | chr1_3:4794049-4794068 | None:intergenic | 25.0% |
| ! | GCTAACTTATTCTTTCAAAT+AGG | + | chr1_3:4794088-4794107 | Msa0098780:intron | 25.0% |
| !!! | ATTTTTTCTCTCCTTCATTT+AGG | - | chr1_3:4794134-4794153 | None:intergenic | 25.0% |
| ! | CATGTGAATAAACAATATAG+TGG | - | chr1_3:4794232-4794251 | None:intergenic | 25.0% |
| ! | AGAGTTATTGATAGATACTT+AGG | + | chr1_3:4794421-4794440 | Msa0098780:intron | 25.0% |
| ! | GAGTTATTGATAGATACTTA+GGG | + | chr1_3:4794422-4794441 | Msa0098780:intron | 25.0% |
| ! | TCATAATATATGCAAAGTTC+GGG | - | chr1_3:4794480-4794499 | None:intergenic | 25.0% |
| ! | ACCTTTATAATGTGAATAAG+TGG | + | chr1_3:4794731-4794750 | Msa0098780:intron | 25.0% |
| ! | CCTTTATAATGTGAATAAGT+GGG | + | chr1_3:4794732-4794751 | Msa0098780:intron | 25.0% |
| ! | CTTTATAATGTGAATAAGTG+GGG | + | chr1_3:4794733-4794752 | Msa0098780:intron | 25.0% |
| !! | AAACAAAAAAAGGATTTGGT+AGG | - | chr1_3:4795034-4795053 | None:intergenic | 25.0% |
| ! | TGCTAAACAAAAAAAGGATT+TGG | - | chr1_3:4795038-4795057 | None:intergenic | 25.0% |
| ! | ACATCCAATAATACAACTTA+AGG | + | chr1_3:4795135-4795154 | Msa0098780:intron | 25.0% |
| !! | CATACCTTAAGTTGTATTAT+TGG | - | chr1_3:4795142-4795161 | None:intergenic | 25.0% |
| ! | CAATAATACAACTTAAGGTA+TGG | + | chr1_3:4795140-4795159 | Msa0098780:intron | 25.0% |
| ! | TTTAATGAAATGTCTCCAAA+AGG | - | chr1_3:4795264-4795283 | None:intergenic | 25.0% |
| ! | TGTCTAGTGAAATAAATTCA+CGG | + | chr1_3:4795299-4795318 | Msa0098780:intron | 25.0% |
| ! | TGTATATATAAATGAACGTG+AGG | + | chr1_3:4795431-4795450 | Msa0098780:intron | 25.0% |
| !!! | GTATTGGTTGATGAAAAAAA+TGG | + | chr1_3:4795474-4795493 | Msa0098780:intron | 25.0% |
| ! | GCCAAAAAGAAAATAAAAAC+TGG | + | chr1_3:4789939-4789958 | Msa0098780:CDS | 25.0% |
| ! | TAGAGATTAACTAATTACCT+TGG | - | chr1_3:4790075-4790094 | Msa0098770:intron | 25.0% |
| TCTTGATACTCATAAGGAAA+AGG | + | chr1_3:4790271-4790290 | Msa0098780:intron | 30.0% | |
| CTTGATACTCATAAGGAAAA+GGG | + | chr1_3:4790272-4790291 | Msa0098780:intron | 30.0% | |
| CTTCACTGTAAAATCTCAAT+AGG | - | chr1_3:4790411-4790430 | Msa0098770:intron | 30.0% | |
| ! | CTATTGAGATTTTACAGTGA+AGG | + | chr1_3:4790409-4790428 | Msa0098780:intron | 30.0% |
| CATTACACATGCATCTATTA+TGG | + | chr1_3:4790553-4790572 | Msa0098780:intron | 30.0% | |
| AACTATTGATATTACGCTTC+GGG | + | chr1_3:4790641-4790660 | Msa0098780:intron | 30.0% | |
| GTCTGTTTGATTACAATGAT+AGG | + | chr1_3:4790801-4790820 | Msa0098780:intron | 30.0% | |
| GTGGTTGAAACTATGATATT+TGG | + | chr1_3:4791229-4791248 | Msa0098780:intron | 30.0% | |
| ACGATTGCAAGATATTTATG+AGG | - | chr1_3:4791690-4791709 | Msa0098770:intron | 30.0% | |
| TTCACATAGACAAAGTAGAT+AGG | - | chr1_3:4791737-4791756 | Msa0098770:intron | 30.0% | |
| ATCTCACCATAAATGAACAA+AGG | + | chr1_3:4791809-4791828 | Msa0098780:intron | 30.0% | |
| AACAAAGGAAATAAAACTGG+TGG | + | chr1_3:4791824-4791843 | Msa0098780:intron | 30.0% | |
| ! | GGAGTAAATTCTAGAAACAA+AGG | + | chr1_3:4791845-4791864 | Msa0098780:intron | 30.0% |
| TACAAGAAATTTGACACAAC+CGG | + | chr1_3:4791972-4791991 | Msa0098780:intron | 30.0% | |
| GTCATATATTTCTTATGCTC+AGG | - | chr1_3:4792046-4792065 | Msa0098770:intron | 30.0% | |
| ATGATGAATTGAGTAGAAAC+TGG | + | chr1_3:4792106-4792125 | Msa0098780:intron | 30.0% | |
| TCTATTCTACTCTACGATAT+TGG | - | chr1_3:4792236-4792255 | Msa0098770:intron | 30.0% | |
| TATCGTAGAGTAGAATAGAA+AGG | + | chr1_3:4792237-4792256 | Msa0098780:intron | 30.0% | |
| TGATCTTCAACAATAAGAAC+TGG | + | chr1_3:4792304-4792323 | Msa0098780:intron | 30.0% | |
| ! | CTCCTAGCAAATTTTCTATT+TGG | + | chr1_3:4792380-4792399 | Msa0098780:intron | 30.0% |
| ! | TGCCAAATAGAAAATTTGCT+AGG | - | chr1_3:4792385-4792404 | Msa0098770:intron | 30.0% |
| CGTGAATTATATGTATGAAG+TGG | - | chr1_3:4792424-4792443 | Msa0098770:intron | 30.0% | |
| TCCATTTACAAATATGTCCA+AGG | + | chr1_3:4792495-4792514 | Msa0098780:intron | 30.0% | |
| TCCTTGGACATATTTGTAAA+TGG | - | chr1_3:4792499-4792518 | Msa0098770:intron | 30.0% | |
| GAGAAGTTTATAACATTCCT+TGG | - | chr1_3:4792515-4792534 | Msa0098770:intron | 30.0% | |
| ATTAAATTGTTTAGCCGAAC+AGG | - | chr1_3:4792700-4792719 | Msa0098770:intron | 30.0% | |
| TTGATGAAGAAGAAAGAACT+CGG | - | chr1_3:4793181-4793200 | Msa0098770:CDS | 30.0% | |
| TTGAAGAAGGTGAAATTGTA+GGG | - | chr1_3:4793241-4793260 | Msa0098770:CDS | 30.0% | |
| TCATGGAATCAAAGAAAGAA+TGG | - | chr1_3:4793364-4793383 | Msa0098770:CDS | 30.0% | |
| GAGATCAAATCAAGAATTCA+TGG | - | chr1_3:4793381-4793400 | Msa0098770:CDS | 30.0% | |
| ATGTTGTTGGATTGATGAAA+TGG | - | chr1_3:4793446-4793465 | Msa0098770:CDS | 30.0% | |
| GGTAAACTTCAAAATGTTGT+TGG | - | chr1_3:4793459-4793478 | Msa0098770:CDS | 30.0% | |
| AATACTTACTTCATCTGATG+TGG | + | chr1_3:4793593-4793612 | Msa0098780:intron | 30.0% | |
| GTGTAAGCTCAATAATCAAA+TGG | - | chr1_3:4793897-4793916 | None:intergenic | 30.0% | |
| !! | ATGAATTGTTTTTCATTCCC+AGG | - | chr1_3:4793932-4793951 | None:intergenic | 30.0% |
| TGAAGATCAACTCTTACATT+TGG | - | chr1_3:4794019-4794038 | None:intergenic | 30.0% | |
| AAATAGGTACAATCTCTCTT+TGG | + | chr1_3:4794357-4794376 | Msa0098780:intron | 30.0% | |
| AATAGGTACAATCTCTCTTT+GGG | + | chr1_3:4794358-4794377 | Msa0098780:intron | 30.0% | |
| !!! | ATACTTAGGGAGTCTTTTTT+TGG | + | chr1_3:4794435-4794454 | Msa0098780:intron | 30.0% |
| CATAATATATGCAAAGTTCG+GGG | - | chr1_3:4794479-4794498 | None:intergenic | 30.0% | |
| AAAGGTGAATTTCAGTCAAT+AGG | - | chr1_3:4794717-4794736 | None:intergenic | 30.0% | |
| CCCACTTATTCACATTATAA+AGG | - | chr1_3:4794735-4794754 | None:intergenic | 30.0% | |
| AAGGTCCTCGTATTAAATAT+TGG | - | chr1_3:4794895-4794914 | None:intergenic | 30.0% | |
| AAAAAAAAGAGCTCAAGGTA+TGG | + | chr1_3:4794953-4794972 | Msa0098780:intron | 30.0% | |
| AAAAAAAGAGCTCAAGGTAT+GGG | + | chr1_3:4794954-4794973 | Msa0098780:intron | 30.0% | |
| AAAAACAACAGATAGGGTAT+TGG | + | chr1_3:4795458-4795477 | Msa0098780:intron | 30.0% | |
| TCTTGATACTCATAAGGAAA+AGG | + | chr1_3:4790271-4790290 | Msa0098780:intron | 30.0% | |
| CTTGATACTCATAAGGAAAA+GGG | + | chr1_3:4790272-4790291 | Msa0098780:intron | 30.0% | |
| !!! | AGCAGCTTTTTTCTTCTTTG+TGG | - | chr1_3:4789880-4789899 | Msa0098770:intron | 35.0% |
| ACTGAATACGAATACCCAAA+AGG | + | chr1_3:4789963-4789982 | Msa0098780:CDS | 35.0% | |
| CTGAATACGAATACCCAAAA+GGG | + | chr1_3:4789964-4789983 | Msa0098780:CDS | 35.0% | |
| GCGAATACTATATCCAACTA+GGG | + | chr1_3:4789992-4790011 | Msa0098780:CDS | 35.0% | |
| ATACAAACACTACTCCTCTT+TGG | + | chr1_3:4790030-4790049 | Msa0098780:CDS | 35.0% | |
| ATGAGTATCAAGACCCTTAT+CGG | - | chr1_3:4790264-4790283 | Msa0098770:intron | 35.0% | |
| TAAGGGTCTTGATACTCATA+AGG | + | chr1_3:4790265-4790284 | Msa0098780:intron | 35.0% | |
| AGATGCATGTGTAATGCTAT+TGG | - | chr1_3:4790549-4790568 | Msa0098770:intron | 35.0% | |
| ! | AATCTCGTATCGATGTATCA+AGG | + | chr1_3:4790855-4790874 | Msa0098780:intron | 35.0% |
| TAGTTTGGTTGGAAATAGGT+AGG | - | chr1_3:4791127-4791146 | Msa0098770:intron | 35.0% | |
| AGGATAGTTTGGTTGGAAAT+AGG | - | chr1_3:4791131-4791150 | Msa0098770:intron | 35.0% | |
| TGCTATTCAACCATCATCTA+TGG | + | chr1_3:4791191-4791210 | Msa0098780:intron | 35.0% | |
| !!! | ATGGCTATCCCTATTTTTAG+TGG | + | chr1_3:4791210-4791229 | Msa0098780:intron | 35.0% |
| !! | ATATTTGGAGCTTTAAAGGG+AGG | + | chr1_3:4791244-4791263 | Msa0098780:intron | 35.0% |
| GTCCCATAAATATTCTTGAG+AGG | - | chr1_3:4791280-4791299 | Msa0098770:intron | 35.0% | |
| TTATGGGACATTGTAGATGA+AGG | + | chr1_3:4791291-4791310 | Msa0098780:intron | 35.0% | |
| AAGATGCATGGAATACATAG+AGG | + | chr1_3:4791469-4791488 | Msa0098780:intron | 35.0% | |
| AGACAAAGTAGATAGGTCTT+TGG | - | chr1_3:4791730-4791749 | Msa0098770:intron | 35.0% | |
| GATCTTTGCTCATAAATTGC+AGG | - | chr1_3:4791774-4791793 | Msa0098770:intron | 35.0% | |
| !! | ATCACTTTTCAAATGCTGCA+TGG | - | chr1_3:4791900-4791919 | Msa0098770:intron | 35.0% |
| ATCATGTCGAGAAAGATTGT+CGG | + | chr1_3:4791922-4791941 | Msa0098780:intron | 35.0% | |
| TTCTTGTAGTTTCGACATTG+TGG | - | chr1_3:4791960-4791979 | Msa0098770:intron | 35.0% | |
| ATTGAGTAGAAACTGGTACT+TGG | + | chr1_3:4792113-4792132 | Msa0098780:intron | 35.0% | |
| AGAAACTGGTACTTGGATAA+TGG | + | chr1_3:4792120-4792139 | Msa0098780:intron | 35.0% | |
| GAAACTGGTACTTGGATAAT+GGG | + | chr1_3:4792121-4792140 | Msa0098780:intron | 35.0% | |
| AAACTGGTACTTGGATAATG+GGG | + | chr1_3:4792122-4792141 | Msa0098780:intron | 35.0% | |
| TAATTCACGACTGCATAACA+TGG | + | chr1_3:4792435-4792454 | Msa0098780:intron | 35.0% | |
| TATCCAGTGATCAAAGCTTA+AGG | - | chr1_3:4792654-4792673 | Msa0098770:intron | 35.0% | |
| TGTATCATGATAAGCGCTTA+TGG | - | chr1_3:4792735-4792754 | Msa0098770:intron | 35.0% | |
| TGTCTTGACTCTTAGAACTA+GGG | - | chr1_3:4792897-4792916 | Msa0098770:intron | 35.0% | |
| TTGTCTTGACTCTTAGAACT+AGG | - | chr1_3:4792898-4792917 | Msa0098770:intron | 35.0% | |
| ATAACAATACCTTGAGGAAG+AGG | + | chr1_3:4792972-4792991 | Msa0098780:intron | 35.0% | |
| ! | TTTGATGATCAACAACTGAG+AGG | - | chr1_3:4793098-4793117 | Msa0098770:intron | 35.0% |
| GTTGAAGAAGGTGAAATTGT+AGG | - | chr1_3:4793242-4793261 | Msa0098770:CDS | 35.0% | |
| !!! | GCTTCACTTTTTGTTGAAGA+AGG | - | chr1_3:4793254-4793273 | Msa0098770:CDS | 35.0% |
| AAGATCGTGTTATGGTTAAG+TGG | - | chr1_3:4793295-4793314 | Msa0098770:CDS | 35.0% | |
| GATTGTAGAAGATCGTGTTA+TGG | - | chr1_3:4793303-4793322 | Msa0098770:intron | 35.0% | |
| ! | TTTTCAACACTCTAACAACG+AGG | - | chr1_3:4793332-4793351 | Msa0098770:intron | 35.0% |
| GGAATCAAAGAAAGAATGGA+AGG | - | chr1_3:4793360-4793379 | Msa0098770:CDS | 35.0% | |
| !! | GATCATCATGATGGATTCAT+AGG | - | chr1_3:4793480-4793499 | Msa0098770:CDS | 35.0% |
| CATCATCATGATCATCATGA+TGG | - | chr1_3:4793489-4793508 | Msa0098770:CDS | 35.0% | |
| CATCATGATGATCATGATGA+TGG | + | chr1_3:4793487-4793506 | Msa0098780:intron | 35.0% | |
| TTACACGTTAGAAAATCACC+TGG | + | chr1_3:4793911-4793930 | Msa0098780:intron | 35.0% | |
| TACACGTTAGAAAATCACCT+GGG | + | chr1_3:4793912-4793931 | Msa0098780:intron | 35.0% | |
| AAAGTTTGGTCAAGTTCAGT+TGG | + | chr1_3:4793979-4793998 | Msa0098780:intron | 35.0% | |
| TCATTCCCAAACCTAAATGA+AGG | + | chr1_3:4794120-4794139 | Msa0098780:intron | 35.0% | |
| ! | TCTCTCCTTCATTTAGGTTT+GGG | - | chr1_3:4794128-4794147 | None:intergenic | 35.0% |
| ! | TTCTCTCCTTCATTTAGGTT+TGG | - | chr1_3:4794129-4794148 | None:intergenic | 35.0% |
| ! | TACCTATGAGGTATCTATGT+TGG | + | chr1_3:4794295-4794314 | Msa0098780:intron | 35.0% |
| TACATAGTATGCACAGATTG+TGG | - | chr1_3:4794774-4794793 | None:intergenic | 35.0% | |
| GAAATGTCTCCAAAAGGATT+TGG | - | chr1_3:4795258-4795277 | None:intergenic | 35.0% | |
| ATGTGTGATATTCATGTCAG+TGG | + | chr1_3:4795407-4795426 | Msa0098780:intron | 35.0% | |
| TGTGTGATATTCATGTCAGT+GGG | + | chr1_3:4795408-4795427 | Msa0098780:intron | 35.0% | |
| AGGACTGAAAAACAACAGAT+AGG | + | chr1_3:4795451-4795470 | Msa0098780:intron | 35.0% | |
| GGACTGAAAAACAACAGATA+GGG | + | chr1_3:4795452-4795471 | Msa0098780:intron | 35.0% | |
| TCGTTACTTACTCTCATTCT+TGG | - | chr1_3:4795526-4795545 | None:intergenic | 35.0% | |
| !!! | AGCAGCTTTTTTCTTCTTTG+TGG | - | chr1_3:4789880-4789899 | Msa0098770:intron | 35.0% |
| ACTGAATACGAATACCCAAA+AGG | + | chr1_3:4789963-4789982 | Msa0098780:CDS | 35.0% | |
| CTGAATACGAATACCCAAAA+GGG | + | chr1_3:4789964-4789983 | Msa0098780:CDS | 35.0% | |
| GCGAATACTATATCCAACTA+GGG | + | chr1_3:4789992-4790011 | Msa0098780:CDS | 35.0% | |
| ATACAAACACTACTCCTCTT+TGG | + | chr1_3:4790030-4790049 | Msa0098780:CDS | 35.0% | |
| ATGAGTATCAAGACCCTTAT+CGG | - | chr1_3:4790264-4790283 | Msa0098770:intron | 35.0% | |
| TAAGGGTCTTGATACTCATA+AGG | + | chr1_3:4790265-4790284 | Msa0098780:intron | 35.0% | |
| !!! | GCTTTTTTCTTCTTTGTGGC+TGG | - | chr1_3:4789876-4789895 | Msa0098770:intron | 40.0% |
| AGAAGAAAAAAGCTGCTGCT+AGG | + | chr1_3:4789883-4789902 | Msa0098780:CDS | 40.0% | |
| GAAGAAAAAAGCTGCTGCTA+GGG | + | chr1_3:4789884-4789903 | Msa0098780:CDS | 40.0% | |
| GGCGAATACTATATCCAACT+AGG | + | chr1_3:4789991-4790010 | Msa0098780:CDS | 40.0% | |
| CAATCGAAACAAACCCTAGT+TGG | - | chr1_3:4790008-4790027 | Msa0098770:intron | 40.0% | |
| CTAATTACCTTGGAACCTGT+AGG | - | chr1_3:4790065-4790084 | Msa0098770:intron | 40.0% | |
| ATGAACCAAGAGTGAAAGCT+GGG | - | chr1_3:4790103-4790122 | Msa0098770:intron | 40.0% | |
| ACTCATAAGGAAAAGGGCAA+TGG | + | chr1_3:4790278-4790297 | Msa0098780:intron | 40.0% | |
| ! | TGAGATTTTACAGTGAAGGG+TGG | + | chr1_3:4790413-4790432 | Msa0098780:intron | 40.0% |
| TATTACGCTTCGGGAGTAAA+AGG | + | chr1_3:4790650-4790669 | Msa0098780:intron | 40.0% | |
| ATTACGCTTCGGGAGTAAAA+GGG | + | chr1_3:4790651-4790670 | Msa0098780:intron | 40.0% | |
| CATCGATACGAGATTTAAGC+AGG | - | chr1_3:4790850-4790869 | Msa0098770:intron | 40.0% | |
| !! | GTGTTTCTGTCTTTGCTGTT+CGG | + | chr1_3:4790897-4790916 | Msa0098780:intron | 40.0% |
| !!! | TGTCTTTGCTGTTCGGTTTT+TGG | + | chr1_3:4790904-4790923 | Msa0098780:intron | 40.0% |
| TCTCAAATTGACCGCTTACT+AGG | - | chr1_3:4790948-4790967 | Msa0098770:intron | 40.0% | |
| GGATACAAGGATAGTTTGGT+TGG | - | chr1_3:4791138-4791157 | Msa0098770:intron | 40.0% | |
| TGTGGGATACAAGGATAGTT+TGG | - | chr1_3:4791142-4791161 | Msa0098770:intron | 40.0% | |
| TAGAAGTGATGTGGGATACA+AGG | - | chr1_3:4791151-4791170 | Msa0098770:intron | 40.0% | |
| ATAGGGATAGCCATAGATGA+TGG | - | chr1_3:4791204-4791223 | Msa0098770:intron | 40.0% | |
| CTACAAGTGTCAAAGATGCA+TGG | + | chr1_3:4791457-4791476 | Msa0098780:intron | 40.0% | |
| ATGCATGGAATACATAGAGG+AGG | + | chr1_3:4791472-4791491 | Msa0098780:intron | 40.0% | |
| TACATAGAGGAGGAGTTTCA+AGG | + | chr1_3:4791482-4791501 | Msa0098780:intron | 40.0% | |
| GCAAGTCAAATGAGATCCTA+CGG | + | chr1_3:4791616-4791635 | Msa0098780:intron | 40.0% | |
| ! | AACTGGTACTTGGATAATGG+GGG | + | chr1_3:4792123-4792142 | Msa0098780:intron | 40.0% |
| CAAAGATCATAGCGTCTTCA+AGG | + | chr1_3:4792165-4792184 | Msa0098780:intron | 40.0% | |
| AGGTAAATTAGGGTCCTGTT+CGG | + | chr1_3:4792683-4792702 | Msa0098780:intron | 40.0% | |
| CATCATCATGCTTCTCAACA+AGG | + | chr1_3:4793019-4793038 | Msa0098780:intron | 40.0% | |
| AAGAACTCGGAGTGTGATTT+CGG | - | chr1_3:4793168-4793187 | Msa0098770:intron | 40.0% | |
| AAGCCTAGAGACGAAATTGT+CGG | - | chr1_3:4793212-4793231 | Msa0098770:CDS | 40.0% | |
| ! | TACTCGATGACGAGGTTTTA+AGG | + | chr1_3:4793416-4793435 | Msa0098780:intron | 40.0% |
| TGATGCATACACCATGAATG+TGG | - | chr1_3:4793520-4793539 | Msa0098770:CDS | 40.0% | |
| TAAAAATGAGGGCTCATGCT+GGG | - | chr1_3:4794267-4794286 | None:intergenic | 40.0% | |
| TTAAAAATGAGGGCTCATGC+TGG | - | chr1_3:4794268-4794287 | None:intergenic | 40.0% | |
| !! | GTAGCGGGTCTTAAAAATGA+GGG | - | chr1_3:4794278-4794297 | None:intergenic | 40.0% |
| ATAGATACCTCATAGGTAGC+GGG | - | chr1_3:4794293-4794312 | None:intergenic | 40.0% | |
| CATAGATACCTCATAGGTAG+CGG | - | chr1_3:4794294-4794313 | None:intergenic | 40.0% | |
| CTCCAACATAGATACCTCAT+AGG | - | chr1_3:4794300-4794319 | None:intergenic | 40.0% | |
| TTAGACATCTAATGAGCACG+AGG | + | chr1_3:4794330-4794349 | Msa0098780:intron | 40.0% | |
| ! | ATGAGCACGAGGTCTAAAAT+AGG | + | chr1_3:4794341-4794360 | Msa0098780:intron | 40.0% |
| !!! | CTTAGGGAGTCTTTTTTTGG+TGG | + | chr1_3:4794438-4794457 | Msa0098780:intron | 40.0% |
| ! | TGAGCTTAGCTTAGTTGGTA+TGG | - | chr1_3:4794514-4794533 | None:intergenic | 40.0% |
| ! | TGTCTCCAAAAGGATTTGGT+CGG | - | chr1_3:4795254-4795273 | None:intergenic | 40.0% |
| !!! | GCTTTTTTCTTCTTTGTGGC+TGG | - | chr1_3:4789876-4789895 | Msa0098770:intron | 40.0% |
| AGAAGAAAAAAGCTGCTGCT+AGG | + | chr1_3:4789883-4789902 | Msa0098780:CDS | 40.0% | |
| GAAGAAAAAAGCTGCTGCTA+GGG | + | chr1_3:4789884-4789903 | Msa0098780:CDS | 40.0% | |
| GGCGAATACTATATCCAACT+AGG | + | chr1_3:4789991-4790010 | Msa0098780:CDS | 40.0% | |
| CAATCGAAACAAACCCTAGT+TGG | - | chr1_3:4790008-4790027 | Msa0098770:intron | 40.0% | |
| CTAATTACCTTGGAACCTGT+AGG | - | chr1_3:4790065-4790084 | Msa0098770:intron | 40.0% | |
| ATGAACCAAGAGTGAAAGCT+GGG | - | chr1_3:4790103-4790122 | Msa0098770:intron | 40.0% | |
| ACTCATAAGGAAAAGGGCAA+TGG | + | chr1_3:4790278-4790297 | Msa0098780:intron | 40.0% | |
| TTCTTCTTTGTGGCTGGAAC+TGG | - | chr1_3:4789870-4789889 | Msa0098770:intron | 45.0% | |
| ACGAATACCCAAAAGGGCAA+TGG | + | chr1_3:4789970-4789989 | Msa0098780:CDS | 45.0% | |
| ! | GTATTCGCCATTGCCCTTTT+GGG | - | chr1_3:4789980-4789999 | Msa0098770:intron | 45.0% |
| ! | AGTATTCGCCATTGCCCTTT+TGG | - | chr1_3:4789981-4790000 | Msa0098770:intron | 45.0% |
| CAAACACTACTCCTCTTTGG+AGG | + | chr1_3:4790033-4790052 | Msa0098780:CDS | 45.0% | |
| TGAACCAAGAGTGAAAGCTG+GGG | - | chr1_3:4790102-4790121 | Msa0098770:intron | 45.0% | |
| CATGAACCAAGAGTGAAAGC+TGG | - | chr1_3:4790104-4790123 | Msa0098770:intron | 45.0% | |
| GAAGAGGCAAAAGCCGATAA+GGG | + | chr1_3:4790248-4790267 | Msa0098780:CDS | 45.0% | |
| GGGAGTAAAAGGGAATCTAG+CGG | + | chr1_3:4790661-4790680 | Msa0098780:intron | 45.0% | |
| TTGCACAAGTGCCTAGTAAG+CGG | + | chr1_3:4790934-4790953 | Msa0098780:intron | 45.0% | |
| TCGGCATAGCTATGATGTCA+CGG | - | chr1_3:4791076-4791095 | Msa0098770:intron | 45.0% | |
| TGTCGGAATATCATCTCCGT+AGG | - | chr1_3:4791635-4791654 | Msa0098770:intron | 45.0% | |
| ! | CTGCCTTAAGCTTTGATCAC+TGG | + | chr1_3:4792648-4792667 | Msa0098780:intron | 45.0% |
| GGTCTGCTTCACATGTTCAT+AGG | - | chr1_3:4792876-4792895 | Msa0098770:intron | 45.0% | |
| ACTAAAGAGCCTCTTCCTCA+AGG | - | chr1_3:4792984-4793003 | Msa0098770:CDS | 45.0% | |
| TGATTGTCGTGCATTTCTCG+TGG | - | chr1_3:4793069-4793088 | Msa0098770:CDS | 45.0% | |
| TGATTTCGGTGGTTGGAATG+GGG | - | chr1_3:4793154-4793173 | Msa0098770:intron | 45.0% | |
| GTGATTTCGGTGGTTGGAAT+GGG | - | chr1_3:4793155-4793174 | Msa0098770:intron | 45.0% | |
| TGTGATTTCGGTGGTTGGAA+TGG | - | chr1_3:4793156-4793175 | Msa0098770:intron | 45.0% | |
| ! | AGACGAAATTGTCGGTTGGT+TGG | - | chr1_3:4793204-4793223 | Msa0098770:CDS | 45.0% |
| CTAGAGACGAAATTGTCGGT+TGG | - | chr1_3:4793208-4793227 | Msa0098770:CDS | 45.0% | |
| CAACCGACAATTTCGTCTCT+AGG | + | chr1_3:4793206-4793225 | Msa0098780:intron | 45.0% | |
| AAAAGTGAAGCCAGTCGATC+AGG | + | chr1_3:4793263-4793282 | Msa0098780:intron | 45.0% | |
| ! | ATGGTGATGAGCCACATTCA+TGG | + | chr1_3:4793506-4793525 | Msa0098780:intron | 45.0% |
| !! | GGTAGCGGGTCTTAAAAATG+AGG | - | chr1_3:4794279-4794298 | None:intergenic | 45.0% |
| ! | TTTAAGACCCGCTACCTATG+AGG | + | chr1_3:4794283-4794302 | Msa0098780:intron | 45.0% |
| !!! | AGGGAGTCTTTTTTTGGTGG+TGG | + | chr1_3:4794441-4794460 | Msa0098780:intron | 45.0% |
| !!! | AGTCTTTTTTTGGTGGTGGC+CGG | + | chr1_3:4794445-4794464 | Msa0098780:intron | 45.0% |
| CACAGATTGTGGTTCGAACT+TGG | - | chr1_3:4794763-4794782 | None:intergenic | 45.0% | |
| ! | ACATGCCGACCAAATCCTTT+TGG | + | chr1_3:4795246-4795265 | Msa0098780:intron | 45.0% |
| TTCTTCTTTGTGGCTGGAAC+TGG | - | chr1_3:4789870-4789889 | Msa0098770:intron | 45.0% | |
| ACGAATACCCAAAAGGGCAA+TGG | + | chr1_3:4789970-4789989 | Msa0098780:CDS | 45.0% | |
| ! | GTATTCGCCATTGCCCTTTT+GGG | - | chr1_3:4789980-4789999 | Msa0098770:intron | 45.0% |
| ! | AGTATTCGCCATTGCCCTTT+TGG | - | chr1_3:4789981-4790000 | Msa0098770:intron | 45.0% |
| CAAACACTACTCCTCTTTGG+AGG | + | chr1_3:4790033-4790052 | Msa0098780:CDS | 45.0% | |
| TGAACCAAGAGTGAAAGCTG+GGG | - | chr1_3:4790102-4790121 | Msa0098770:intron | 45.0% | |
| CATGAACCAAGAGTGAAAGC+TGG | - | chr1_3:4790104-4790123 | Msa0098770:intron | 45.0% | |
| GAAGAGGCAAAAGCCGATAA+GGG | + | chr1_3:4790248-4790267 | Msa0098780:CDS | 45.0% | |
| !! | TTAATTAGAAATTAAATTTA+AGG | - | chr1_3:4792578-4792597 | Msa0098770:intron | 5.0% |
| !!! | TAATTTCTAATTAATTTTAT+TGG | + | chr1_3:4792584-4792603 | Msa0098780:intron | 5.0% |
| GTAGGATCACTCCTCCAAAG+AGG | - | chr1_3:4790047-4790066 | Msa0098770:intron | 50.0% | |
| ! | CTTTGGAGGAGTGATCCTAC+AGG | + | chr1_3:4790047-4790066 | Msa0098780:CDS | 50.0% |
| GAGTGATCCTACAGGTTCCA+AGG | + | chr1_3:4790055-4790074 | Msa0098780:CDS | 50.0% | |
| TTCTCCCCAGCTTTCACTCT+TGG | + | chr1_3:4790095-4790114 | Msa0098780:intron | 50.0% | |
| CAGTCGTTGTGCAATGCATG+TGG | + | chr1_3:4790209-4790228 | Msa0098780:intron | 50.0% | |
| ATGTGGACTCCGACGAAGAA+GGG | + | chr1_3:4790226-4790245 | Msa0098780:CDS | 50.0% | |
| TTGCCTCTTCCCTTCTTCGT+CGG | - | chr1_3:4790238-4790257 | Msa0098770:intron | 50.0% | |
| GGAAGAGGCAAAAGCCGATA+AGG | + | chr1_3:4790247-4790266 | Msa0098780:CDS | 50.0% | |
| GGGGGTAGCTAGTAATCACA+TGG | + | chr1_3:4792141-4792160 | Msa0098780:intron | 50.0% | |
| ATTTCGGTGGTTGGAATGGG+GGG | - | chr1_3:4793152-4793171 | Msa0098770:intron | 50.0% | |
| GATTTCGGTGGTTGGAATGG+GGG | - | chr1_3:4793153-4793172 | Msa0098770:intron | 50.0% | |
| AACTCGGAGTGTGATTTCGG+TGG | - | chr1_3:4793165-4793184 | Msa0098770:intron | 50.0% | |
| !!! | GTCTTTTTTTGGTGGTGGCC+GGG | + | chr1_3:4794446-4794465 | Msa0098780:intron | 50.0% |
| !!! | TCTTTTTTTGGTGGTGGCCG+GGG | + | chr1_3:4794447-4794466 | Msa0098780:intron | 50.0% |
| CCTCGTGAGCTTAGCTTAGT+TGG | - | chr1_3:4794519-4794538 | None:intergenic | 50.0% | |
| CCAACTAAGCTAAGCTCACG+AGG | + | chr1_3:4794516-4794535 | Msa0098780:intron | 50.0% | |
| GTAGGATCACTCCTCCAAAG+AGG | - | chr1_3:4790047-4790066 | Msa0098770:intron | 50.0% | |
| ! | CTTTGGAGGAGTGATCCTAC+AGG | + | chr1_3:4790047-4790066 | Msa0098780:CDS | 50.0% |
| GAGTGATCCTACAGGTTCCA+AGG | + | chr1_3:4790055-4790074 | Msa0098780:CDS | 50.0% | |
| TTCTCCCCAGCTTTCACTCT+TGG | + | chr1_3:4790095-4790114 | Msa0098780:intron | 50.0% | |
| CAGTCGTTGTGCAATGCATG+TGG | + | chr1_3:4790209-4790228 | Msa0098780:intron | 50.0% | |
| ATGTGGACTCCGACGAAGAA+GGG | + | chr1_3:4790226-4790245 | Msa0098780:CDS | 50.0% | |
| TTGCCTCTTCCCTTCTTCGT+CGG | - | chr1_3:4790238-4790257 | Msa0098770:intron | 50.0% | |
| GGAAGAGGCAAAAGCCGATA+AGG | + | chr1_3:4790247-4790266 | Msa0098780:CDS | 50.0% | |
| CATGTGGACTCCGACGAAGA+AGG | + | chr1_3:4790225-4790244 | Msa0098780:CDS | 55.0% | |
| ACTCCGACGAAGAAGGGAAG+AGG | + | chr1_3:4790232-4790251 | Msa0098780:CDS | 55.0% | |
| TGGCGAACGCTCATCATCTG+AGG | + | chr1_3:4790298-4790317 | Msa0098780:intron | 55.0% | |
| TGGTTGGAATGGGGGGACTT+GGG | - | chr1_3:4793145-4793164 | Msa0098770:intron | 55.0% | |
| CGGAGTGTGATTTCGGTGGT+TGG | - | chr1_3:4793161-4793180 | Msa0098770:intron | 55.0% | |
| TCACACGCTACTCGATGACG+AGG | + | chr1_3:4793408-4793427 | Msa0098780:intron | 55.0% | |
| AATGAGGGCTCATGCTGGGA+TGG | - | chr1_3:4794263-4794282 | None:intergenic | 55.0% | |
| AAAGTTCGGGGTTCGAACCC+CGG | - | chr1_3:4794467-4794486 | None:intergenic | 55.0% | |
| GGCGTTTCGCATACGTTGCT+TGG | + | chr1_3:4795320-4795339 | Msa0098780:intron | 55.0% | |
| CATGTGGACTCCGACGAAGA+AGG | + | chr1_3:4790225-4790244 | Msa0098780:CDS | 55.0% | |
| ACTCCGACGAAGAAGGGAAG+AGG | + | chr1_3:4790232-4790251 | Msa0098780:CDS | 55.0% | |
| TGGCGAACGCTCATCATCTG+AGG | + | chr1_3:4790298-4790317 | Msa0098780:intron | 55.0% | |
| GTGGTTGGAATGGGGGGACT+TGG | - | chr1_3:4793146-4793165 | Msa0098770:intron | 60.0% | |
| GTGGCGTGATCCTGATCGAC+TGG | - | chr1_3:4793276-4793295 | Msa0098770:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 4789846 | 4796039 | 4789846 | ID=Msa0098780;Name=Msa0098780 |
| chr1_3 | mRNA | 4789846 | 4796039 | 4789846 | ID=Msa0098780-mRNA-1;Parent=Msa0098780;Name=Msa0098780-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0|0|1|0.66|0.5|4|0|211 |
| chr1_3 | exon | 4789846 | 4790076 | 4789846 | ID=Msa0098780-mRNA-1:exon:1706;Parent=Msa0098780-mRNA-1 |
| chr1_3 | exon | 4790212 | 4790269 | 4790212 | ID=Msa0098780-mRNA-1:exon:1707;Parent=Msa0098780-mRNA-1 |
| chr1_3 | exon | 4795554 | 4795759 | 4795554 | ID=Msa0098780-mRNA-1:exon:1708;Parent=Msa0098780-mRNA-1 |
| chr1_3 | exon | 4795899 | 4796039 | 4795899 | ID=Msa0098780-mRNA-1:exon:1709;Parent=Msa0098780-mRNA-1 |
| chr1_3 | CDS | 4789846 | 4790076 | 4789846 | ID=Msa0098780-mRNA-1:cds;Parent=Msa0098780-mRNA-1 |
| chr1_3 | CDS | 4790212 | 4790269 | 4790212 | ID=Msa0098780-mRNA-1:cds;Parent=Msa0098780-mRNA-1 |
| chr1_3 | CDS | 4795554 | 4795759 | 4795554 | ID=Msa0098780-mRNA-1:cds;Parent=Msa0098780-mRNA-1 |
| chr1_3 | CDS | 4795899 | 4796039 | 4795899 | ID=Msa0098780-mRNA-1:cds;Parent=Msa0098780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
