AlfalfaGEDB | Msa0098780

M. sativa cultivar zhongmu-4 / Msa0098780

KEGG: -
GO: GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0001704 GO:0001706 GO:0001708 GO:0001711 GO:0001714 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0007369 GO:0007492 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009790 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0035295 GO:0035987 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045165 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048565 GO:0048598 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055123 GO:0060255 GO:0060465 GO:0060795 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
PFAM: PF00320.30

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0098780	AES59248.1	55.556	99	33	3	9	96	2	100	2.32e-16	82.4
Msa0098780	AES59248.1	56.311	103	34	3	97	188	2	104	3.42e-19	89.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0098780	sp\|Q5HZ36\|GAT21_ARATH	49.231	65	29	1	25	89	203	263	5.42e-11	64.3
Msa0098780	sp\|Q5HZ36\|GAT21_ARATH	49.231	65	29	1	113	177	203	263	5.42e-11	64.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0098780	G7I9Y7	55.556	99	33	3	9	96	2	100	1.11e-16	82.4
Msa0098780	G7I9Y7	56.311	103	34	3	97	188	2	104	1.63e-19	89.7

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TFs/TRs:

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Gene ID	Type	Classification
Msa0098780	TF	C2C2-GATA

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0098780	MtrunA17_Chr1g0151471	56.311	103	34	3	97	188	2	104	3.15e-23	89.7
Msa0098780	MtrunA17_Chr1g0151471	55.556	99	33	3	9	96	2	100	2.14e-20	82.4
Msa0098780	MtrunA17_Chr1g0151461	61.224	49	16	1	143	188	186	234	5.13e-12	63.5
Msa0098780	MtrunA17_Chr1g0151461	43.421	76	31	1	55	130	186	249	3.10e-11	61.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0098780	AT5G56860.1	49.231	65	29	1	25	89	203	263	5.51e-12	64.3
Msa0098780	AT5G56860.1	49.231	65	29	1	113	177	203	263	5.51e-12	64.3

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Find 48 sgRNAs with CRISPR-Local

Find 345 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACGAATACCCAAAAGGGCAA+TGG	0.610371	1_3:+4789970	Msa0098780:CDS
ACGAATACCCAAAAGGGCAA+TGG	0.610371	1_3:+4795653	Msa0098780:CDS
ACTCATAAGGAAAAGGGCAA+TGG	0.616678	1_3:+4795965	Msa0098780:CDS
ACTCCGACGAAGAAGGGAAG+AGG	0.589069	1_3:+4790232	Msa0098780:CDS
ACTCCGACGAAGAAGGGAAG+AGG	0.589069	1_3:+4795919	Msa0098780:CDS
ACTGAATACGAATACCCAAA+AGG	0.517161	1_3:+4789963	Msa0098780:CDS
ACTGAATACGAATACCCAAA+AGG	0.517161	1_3:+4795646	Msa0098780:CDS
AGTATTCGCCATTGCCCTTT+TGG	0.253039	1_3:-4789978	Msa0098770:intron
AGTATTCGCCATTGCCCTTT+TGG	0.253039	1_3:-4795661	None:intergenic
ATACAAACACTACTCCTCTT+TGG	0.387924	1_3:+4790030	Msa0098780:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCTTGATACTCATAAGGAAA+AGG	+	chr1_3:4790271-4790290	Msa0098780:intron	30.0%
CTTGATACTCATAAGGAAAA+GGG	+	chr1_3:4790272-4790291	Msa0098780:intron	30.0%
CTTCACTGTAAAATCTCAAT+AGG	-	chr1_3:4790411-4790430	Msa0098770:intron	30.0%
CATTACACATGCATCTATTA+TGG	+	chr1_3:4790553-4790572	Msa0098780:intron	30.0%
AACTATTGATATTACGCTTC+GGG	+	chr1_3:4790641-4790660	Msa0098780:intron	30.0%
GTCTGTTTGATTACAATGAT+AGG	+	chr1_3:4790801-4790820	Msa0098780:intron	30.0%
GTGGTTGAAACTATGATATT+TGG	+	chr1_3:4791229-4791248	Msa0098780:intron	30.0%
ACGATTGCAAGATATTTATG+AGG	-	chr1_3:4791690-4791709	Msa0098770:intron	30.0%
TTCACATAGACAAAGTAGAT+AGG	-	chr1_3:4791737-4791756	Msa0098770:intron	30.0%
ATCTCACCATAAATGAACAA+AGG	+	chr1_3:4791809-4791828	Msa0098780:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	4789846	4796039	4789846	ID=Msa0098780;Name=Msa0098780
chr1_3	mRNA	4789846	4796039	4789846	ID=Msa0098780-mRNA-1;Parent=Msa0098780;Name=Msa0098780-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0\|0\|0\|1\|0.66\|0.5\|4\|0\|211
chr1_3	exon	4789846	4790076	4789846	ID=Msa0098780-mRNA-1:exon:1706;Parent=Msa0098780-mRNA-1
chr1_3	exon	4790212	4790269	4790212	ID=Msa0098780-mRNA-1:exon:1707;Parent=Msa0098780-mRNA-1
chr1_3	exon	4795554	4795759	4795554	ID=Msa0098780-mRNA-1:exon:1708;Parent=Msa0098780-mRNA-1
chr1_3	exon	4795899	4796039	4795899	ID=Msa0098780-mRNA-1:exon:1709;Parent=Msa0098780-mRNA-1
chr1_3	CDS	4789846	4790076	4789846	ID=Msa0098780-mRNA-1:cds;Parent=Msa0098780-mRNA-1
chr1_3	CDS	4790212	4790269	4790212	ID=Msa0098780-mRNA-1:cds;Parent=Msa0098780-mRNA-1
chr1_3	CDS	4795554	4795759	4795554	ID=Msa0098780-mRNA-1:cds;Parent=Msa0098780-mRNA-1
chr1_3	CDS	4795899	4796039	4795899	ID=Msa0098780-mRNA-1:cds;Parent=Msa0098780-mRNA-1

Gene Sequence

>Msa0098780

ATGAGAGTAAGTAACGATGATCCAGTTCCAGCCACAAAGAAGAAAAAAGCTGCTGCTAGGGCTACAAAAAAGAAGAAAACAGCTGCTAGTGCTGCCAAAAAGAAAATAAAAACTGGTACTGAATACGAATACCCAAAAGGGCAATGGCGAATACTATATCCAACTAGGGTTTGTTTCGATTGCAATACAAACACTACTCCTCTTTGGAGGAGTGATCCTACAGGTTCCAAGTCGTTGTGCAATGCATGTGGACTCCGACGAAGAAGGGAAGAGGCAAAAGCCGATAAGGTTCCAGCCACAAAGAAGAAAAAAGCTGCTGCTAGGGCTACAAAAAAGAAGAAAACAGCTGCTAGTGCTGCCAAAAAGAAAATAAAAACTGGTACTGAATACGAATACCCAAAAGGGCAATGGCGAATACTATATCCAACTAGGGTTTGTTTCGATTGCAATACAAACACTACTCCTCTTTGGAGGAGTGATCCTACAGGTTCCAAGTCGTTGTGCAATGCATGTGGACTCCGACGAAGAAGGGAAGAGGCAAAAGCCGATAAGGGTCTTGATACTCATAAGGAAAAGGGCAATGGCGAACGCTCATCATCTGAGGATGTGAAGATTAATGTTTTAATGTTCATCTGA

Protein sequence

>Msa0098780

MRVSNDDPVPATKKKKAAARATKKKKTAASAAKKKIKTGTEYEYPKGQWRILYPTRVCFDCNTNTTPLWRSDPTGSKSLCNACGLRRRREEAKADKVPATKKKKAAARATKKKKTAASAAKKKIKTGTEYEYPKGQWRILYPTRVCFDCNTNTTPLWRSDPTGSKSLCNACGLRRRREEAKADKGLDTHKEKGNGERSSSEDVKINVLMFI*