Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0098910 | MCH82909.1 | 73.538 | 325 | 85 | 1 | 18 | 342 | 4 | 327 | 0.0 | 522 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0098910 | sp|Q9SWG3|FAR1_ARATH | 35.238 | 315 | 183 | 6 | 39 | 340 | 48 | 354 | 1.83e-58 | 205 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0098910 | A0A392M6P6 | 73.538 | 325 | 85 | 1 | 18 | 342 | 4 | 327 | 0.0 | 522 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0098910 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0098910 | MtrunA17_Chr2g0296781 | 78.305 | 295 | 64 | 0 | 48 | 342 | 3 | 297 | 3.59e-177 | 509 |
| Msa0098910 | MtrunA17_Chr1g0196541 | 60.678 | 295 | 116 | 0 | 48 | 342 | 3 | 297 | 2.67e-134 | 399 |
| Msa0098910 | MtrunA17_Chr6g0477261 | 85.326 | 184 | 27 | 0 | 157 | 340 | 1 | 184 | 1.78e-115 | 349 |
| Msa0098910 | MtrunA17_Chr5g0441581 | 47.649 | 319 | 151 | 5 | 28 | 340 | 15 | 323 | 1.18e-91 | 288 |
| Msa0098910 | MtrunA17_Chr2g0291591 | 36.697 | 327 | 200 | 4 | 18 | 340 | 39 | 362 | 4.48e-68 | 223 |
| Msa0098910 | MtrunA17_Chr2g0329031 | 38.538 | 301 | 164 | 5 | 48 | 340 | 20 | 307 | 7.11e-64 | 216 |
| Msa0098910 | MtrunA17_Chr5g0448761 | 37.460 | 315 | 182 | 9 | 39 | 340 | 57 | 369 | 9.75e-60 | 205 |
| Msa0098910 | MtrunA17_Chr1g0207551 | 35.256 | 312 | 184 | 4 | 39 | 340 | 31 | 334 | 3.12e-59 | 204 |
| Msa0098910 | MtrunA17_Chr2g0291581 | 36.304 | 303 | 181 | 5 | 42 | 343 | 71 | 362 | 1.06e-58 | 201 |
| Msa0098910 | MtrunA17_Chr1g0202341 | 37.419 | 310 | 178 | 6 | 41 | 340 | 50 | 353 | 1.32e-58 | 201 |
| Msa0098910 | MtrunA17_Chr3g0080351 | 34.069 | 317 | 169 | 5 | 41 | 340 | 75 | 368 | 8.22e-54 | 189 |
| Msa0098910 | MtrunA17_Chr8g0363841 | 35.048 | 311 | 194 | 4 | 38 | 340 | 10 | 320 | 9.60e-52 | 182 |
| Msa0098910 | MtrunA17_Chr5g0440451 | 33.742 | 326 | 177 | 9 | 41 | 342 | 42 | 352 | 3.85e-49 | 177 |
| Msa0098910 | MtrunA17_Chr2g0324011 | 32.258 | 310 | 202 | 5 | 39 | 342 | 7 | 314 | 4.27e-47 | 168 |
| Msa0098910 | MtrunA17_Chr2g0287651 | 32.573 | 307 | 186 | 6 | 48 | 340 | 81 | 380 | 4.20e-46 | 168 |
| Msa0098910 | MtrunA17_Chr7g0258861 | 32.168 | 286 | 181 | 5 | 39 | 314 | 7 | 289 | 7.66e-44 | 153 |
| Msa0098910 | MtrunA17_Chr2g0287061 | 32.378 | 349 | 187 | 10 | 2 | 340 | 141 | 450 | 4.72e-43 | 159 |
| Msa0098910 | MtrunA17_Chr3g0082121 | 33.428 | 353 | 211 | 11 | 1 | 342 | 1 | 340 | 4.90e-43 | 158 |
| Msa0098910 | MtrunA17_Chr1g0203721 | 32.484 | 314 | 189 | 7 | 44 | 342 | 65 | 370 | 4.90e-41 | 153 |
| Msa0098910 | MtrunA17_Chr3g0118611 | 50.365 | 137 | 68 | 0 | 206 | 342 | 113 | 249 | 6.30e-41 | 152 |
| Msa0098910 | MtrunA17_Chr1g0198761 | 30.769 | 312 | 193 | 8 | 45 | 337 | 50 | 357 | 2.34e-39 | 148 |
| Msa0098910 | MtrunA17_Chr6g0458391 | 30.887 | 327 | 195 | 9 | 26 | 342 | 207 | 512 | 4.80e-39 | 147 |
| Msa0098910 | MtrunA17_Chr1g0203051 | 29.605 | 304 | 201 | 7 | 48 | 342 | 85 | 384 | 5.61e-39 | 146 |
| Msa0098910 | MtrunA17_Chr5g0448511 | 45.070 | 142 | 77 | 1 | 199 | 340 | 1 | 141 | 2.00e-38 | 144 |
| Msa0098910 | MtrunA17_Chr2g0276841 | 28.025 | 314 | 202 | 8 | 42 | 338 | 70 | 376 | 5.79e-37 | 141 |
| Msa0098910 | MtrunA17_Chr1g0164591 | 36.596 | 235 | 122 | 6 | 120 | 343 | 3 | 221 | 5.39e-36 | 133 |
| Msa0098910 | MtrunA17_Chr5g0431001 | 30.189 | 318 | 195 | 9 | 42 | 338 | 61 | 372 | 4.30e-35 | 134 |
| Msa0098910 | MtrunA17_Chr6g0476431 | 62.791 | 86 | 32 | 0 | 48 | 133 | 3 | 88 | 6.77e-34 | 120 |
| Msa0098910 | MtrunA17_Chr2g0294841 | 27.974 | 311 | 209 | 6 | 42 | 338 | 45 | 354 | 2.15e-31 | 125 |
| Msa0098910 | MtrunA17_Chr2g0290391 | 25.970 | 335 | 216 | 11 | 29 | 340 | 42 | 367 | 2.68e-26 | 110 |
| Msa0098910 | MtrunA17_Chr6g0451441 | 32.500 | 200 | 125 | 5 | 10 | 203 | 52 | 247 | 7.73e-23 | 99.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0098910 | AT4G15090.1 | 35.238 | 315 | 183 | 6 | 39 | 340 | 48 | 354 | 1.86e-59 | 205 |
| Msa0098910 | AT4G15090.5 | 35.238 | 315 | 183 | 6 | 39 | 340 | 48 | 354 | 1.86e-59 | 205 |
| Msa0098910 | AT4G15090.3 | 35.238 | 315 | 183 | 6 | 39 | 340 | 48 | 354 | 1.86e-59 | 205 |
| Msa0098910 | AT4G15090.2 | 35.238 | 315 | 183 | 6 | 39 | 340 | 48 | 354 | 1.86e-59 | 205 |
| Msa0098910 | AT4G15090.4 | 35.238 | 315 | 183 | 6 | 39 | 340 | 48 | 354 | 1.86e-59 | 205 |
| Msa0098910 | AT1G76320.3 | 36.986 | 292 | 158 | 6 | 48 | 328 | 3 | 279 | 8.21e-58 | 199 |
| Msa0098910 | AT1G76320.1 | 36.986 | 292 | 158 | 6 | 48 | 328 | 3 | 279 | 9.65e-58 | 199 |
| Msa0098910 | AT1G76320.4 | 36.986 | 292 | 158 | 6 | 48 | 328 | 3 | 279 | 9.65e-58 | 199 |
| Msa0098910 | AT1G76320.2 | 36.986 | 292 | 158 | 6 | 48 | 328 | 3 | 279 | 1.22e-57 | 199 |
| Msa0098910 | AT4G38180.1 | 33.538 | 325 | 205 | 6 | 25 | 340 | 56 | 378 | 2.70e-54 | 191 |
| Msa0098910 | AT1G80010.1 | 33.333 | 312 | 193 | 7 | 42 | 342 | 95 | 402 | 7.13e-52 | 183 |
| Msa0098910 | AT3G22170.2 | 30.599 | 317 | 181 | 3 | 41 | 340 | 69 | 363 | 1.13e-48 | 175 |
| Msa0098910 | AT3G22170.1 | 30.599 | 317 | 181 | 3 | 41 | 340 | 69 | 363 | 1.13e-48 | 175 |
| Msa0098910 | AT1G52520.1 | 32.676 | 355 | 206 | 10 | 9 | 343 | 37 | 378 | 1.19e-47 | 171 |
| Msa0098910 | AT2G27110.2 | 34.056 | 323 | 181 | 6 | 23 | 340 | 30 | 325 | 4.07e-47 | 171 |
| Msa0098910 | AT2G27110.1 | 34.056 | 323 | 181 | 6 | 23 | 340 | 30 | 325 | 4.07e-47 | 171 |
| Msa0098910 | AT4G19990.3 | 35.669 | 314 | 149 | 10 | 45 | 340 | 24 | 302 | 6.29e-44 | 161 |
| Msa0098910 | AT4G19990.4 | 35.669 | 314 | 149 | 10 | 45 | 340 | 24 | 302 | 6.29e-44 | 161 |
| Msa0098910 | AT4G19990.7 | 35.669 | 314 | 149 | 10 | 45 | 340 | 38 | 316 | 6.90e-44 | 161 |
| Msa0098910 | AT4G19990.5 | 35.669 | 314 | 149 | 10 | 45 | 340 | 24 | 302 | 7.54e-44 | 161 |
| Msa0098910 | AT4G19990.6 | 35.669 | 314 | 149 | 10 | 45 | 340 | 24 | 302 | 9.24e-44 | 161 |
| Msa0098910 | AT4G19990.2 | 35.669 | 314 | 149 | 10 | 45 | 340 | 24 | 302 | 9.24e-44 | 161 |
| Msa0098910 | AT2G27110.3 | 41.143 | 175 | 95 | 1 | 166 | 340 | 14 | 180 | 5.66e-42 | 155 |
| Msa0098910 | AT5G18960.2 | 31.353 | 303 | 171 | 8 | 41 | 340 | 210 | 478 | 1.18e-41 | 155 |
| Msa0098910 | AT5G18960.1 | 31.353 | 303 | 171 | 8 | 41 | 340 | 210 | 478 | 1.18e-41 | 155 |
| Msa0098910 | AT3G06250.2 | 31.353 | 303 | 168 | 8 | 41 | 340 | 189 | 454 | 4.69e-41 | 153 |
| Msa0098910 | AT3G06250.1 | 31.353 | 303 | 168 | 8 | 41 | 340 | 189 | 454 | 4.69e-41 | 153 |
| Msa0098910 | AT3G06250.3 | 31.353 | 303 | 168 | 8 | 41 | 340 | 189 | 454 | 4.69e-41 | 153 |
| Msa0098910 | AT4G19990.1 | 36.752 | 234 | 112 | 5 | 108 | 340 | 47 | 245 | 2.61e-37 | 142 |
| Msa0098910 | AT1G10240.2 | 28.875 | 329 | 207 | 11 | 28 | 338 | 35 | 354 | 3.56e-37 | 142 |
| Msa0098910 | AT1G10240.1 | 28.875 | 329 | 207 | 11 | 28 | 338 | 35 | 354 | 3.56e-37 | 142 |
| Msa0098910 | AT2G32250.5 | 47.154 | 123 | 65 | 0 | 218 | 340 | 176 | 298 | 8.11e-37 | 141 |
| Msa0098910 | AT2G32250.2 | 47.154 | 123 | 65 | 0 | 218 | 340 | 176 | 298 | 8.18e-37 | 141 |
| Msa0098910 | AT2G32250.4 | 47.154 | 123 | 65 | 0 | 218 | 340 | 176 | 298 | 8.18e-37 | 141 |
| Msa0098910 | AT2G32250.6 | 47.154 | 123 | 65 | 0 | 218 | 340 | 176 | 298 | 8.61e-37 | 141 |
| Msa0098910 | AT2G32250.1 | 47.154 | 123 | 65 | 0 | 218 | 340 | 176 | 298 | 8.61e-37 | 141 |
| Msa0098910 | AT2G32250.3 | 47.154 | 123 | 65 | 0 | 218 | 340 | 176 | 298 | 8.61e-37 | 141 |
| Msa0098910 | AT2G32250.7 | 47.154 | 123 | 65 | 0 | 218 | 340 | 135 | 257 | 9.36e-37 | 141 |
| Msa0098910 | AT2G32250.8 | 47.154 | 123 | 65 | 0 | 218 | 340 | 135 | 257 | 9.59e-37 | 141 |
| Msa0098910 | AT4G38170.1 | 44.295 | 149 | 71 | 3 | 213 | 353 | 19 | 163 | 6.76e-35 | 134 |
| Msa0098910 | AT5G28530.3 | 27.950 | 322 | 198 | 7 | 42 | 337 | 55 | 368 | 6.26e-34 | 132 |
| Msa0098910 | AT5G28530.2 | 27.950 | 322 | 198 | 7 | 42 | 337 | 55 | 368 | 6.26e-34 | 132 |
| Msa0098910 | AT5G28530.1 | 27.950 | 322 | 198 | 7 | 42 | 337 | 55 | 368 | 7.05e-34 | 132 |
Find 47 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGAGTTATGCCCAATCTA+TGG | 0.242427 | 1_3:-4926699 | Msa0098910:CDS |
| AATGCATGTATTTCTTTAGA+TGG | 0.249459 | 1_3:-4926524 | Msa0098910:CDS |
| CTAAAATAGCGTGCTTTGTC+AGG | 0.272247 | 1_3:+4926452 | None:intergenic |
| TATGCCCAATCTATGGGTTT+TGG | 0.292447 | 1_3:-4926692 | Msa0098910:CDS |
| AGGGCTGCATATGAATATTT+TGG | 0.330794 | 1_3:-4926119 | Msa0098910:CDS |
| TGATCGGTAATTATGGCATT+TGG | 0.337887 | 1_3:+4925912 | None:intergenic |
| GCATGCACTCTAACCATGTT+TGG | 0.393751 | 1_3:+4925946 | None:intergenic |
| TAACTCCAAAACCCATAGAT+TGG | 0.409903 | 1_3:+4926687 | None:intergenic |
| AAGTGAGGAGACTACGACTT+GGG | 0.414907 | 1_3:-4926271 | Msa0098910:CDS |
| TCATGGCCAATCTGTGTTGT+TGG | 0.420636 | 1_3:-4926018 | Msa0098910:CDS |
| TGATGGTTTACTCCAACAAA+TGG | 0.425908 | 1_3:+4926038 | None:intergenic |
| TCTGTCTTGATCGGTAATTA+TGG | 0.452701 | 1_3:+4925905 | None:intergenic |
| AACTCCAAAACCCATAGATT+GGG | 0.455626 | 1_3:+4926688 | None:intergenic |
| GATGGTTTACTCCAACAAAT+GGG | 0.455733 | 1_3:+4926039 | None:intergenic |
| GAATATGACATTTGGTGAAA+AGG | 0.456326 | 1_3:-4926315 | Msa0098910:CDS |
| CATGGCCAATCTGTGTTGTT+GGG | 0.456597 | 1_3:-4926017 | Msa0098910:CDS |
| ACTCCAACAAATGGGGCAAA+AGG | 0.479062 | 1_3:+4926047 | None:intergenic |
| GGTTATGAGAATATGACATT+TGG | 0.482364 | 1_3:-4926323 | Msa0098910:CDS |
| TTTGGGCAGATGCGAGATGT+AGG | 0.485083 | 1_3:-4926139 | Msa0098910:CDS |
| AGGATACTAAGTCCTTTACT+TGG | 0.489445 | 1_3:-4925974 | Msa0098910:CDS |
| TCAATGGTTGTTGAAGCAAA+TGG | 0.495114 | 1_3:-4926344 | Msa0098910:CDS |
| TGGATCAAAGTATGTGAGTA+AGG | 0.495275 | 1_3:-4926603 | Msa0098910:CDS |
| AAGAGTTATGCCCAATCTAT+GGG | 0.502102 | 1_3:-4926698 | Msa0098910:CDS |
| ACAACACAGATTGGCCATGA+TGG | 0.504337 | 1_3:+4926021 | None:intergenic |
| TTTCATGGATCTGTCTTGAT+CGG | 0.508760 | 1_3:+4925896 | None:intergenic |
| TTGGGCAGATGCGAGATGTA+GGG | 0.512318 | 1_3:-4926138 | Msa0098910:CDS |
| AGGAGACTACGACTTGGGGC+TGG | 0.514634 | 1_3:-4926266 | Msa0098910:CDS |
| ATTTGTATCTTCTGATGAAG+AGG | 0.520293 | 1_3:-4926840 | Msa0098910:CDS |
| TGGATCCTCGTTTGAAAAGG+AGG | 0.528466 | 1_3:-4926415 | Msa0098910:CDS |
| CACAGCCCAACAACACAGAT+TGG | 0.536074 | 1_3:+4926012 | None:intergenic |
| GGGCTGTGCTTTATTGTCGA+AGG | 0.551617 | 1_3:-4925997 | Msa0098910:CDS |
| TTTGTTGGAGTAAACCATCA+TGG | 0.557125 | 1_3:-4926035 | Msa0098910:CDS |
| TAAAATAGCGTGCTTTGTCA+GGG | 0.562727 | 1_3:+4926453 | None:intergenic |
| TTAGAACTCAATGATCAAGC+TGG | 0.567016 | 1_3:-4926392 | Msa0098910:CDS |
| ACATGGTTAGAGTGCATGCA+TGG | 0.583025 | 1_3:-4925942 | Msa0098910:CDS |
| TTACTTGGTTATTCCAAACA+TGG | 0.586529 | 1_3:-4925959 | Msa0098910:CDS |
| CTGTGCTTTATTGTCGAAGG+AGG | 0.593919 | 1_3:-4925994 | Msa0098910:CDS |
| TGTTTGGAATAACCAAGTAA+AGG | 0.602120 | 1_3:+4925962 | None:intergenic |
| GATGAAGAGGAAATCAGAGA+GGG | 0.625109 | 1_3:-4926827 | Msa0098910:CDS |
| AGTGAGGAGACTACGACTTG+GGG | 0.641932 | 1_3:-4926270 | Msa0098910:CDS |
| CTAAATATAGTTCCAACCTG+AGG | 0.648571 | 1_3:+4926749 | None:intergenic |
| AAAGTGAGGAGACTACGACT+TGG | 0.649574 | 1_3:-4926272 | Msa0098910:CDS |
| GAAACTATATAGATAAAGTG+AGG | 0.649765 | 1_3:-4926286 | Msa0098910:CDS |
| ACTTGGGGCTGGAGATGCTG+AGG | 0.650883 | 1_3:-4926255 | Msa0098910:CDS |
| ATGGTTTACTCCAACAAATG+GGG | 0.652441 | 1_3:+4926040 | None:intergenic |
| TTTACTCTAGCATGTAGTCG+TGG | 0.653028 | 1_3:-4926623 | Msa0098910:CDS |
| TGATGAAGAGGAAATCAGAG+AGG | 0.679814 | 1_3:-4926828 | Msa0098910:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTAATTTATTGCATTAG+TGG | - | chr1_3:4926010-4926029 | Msa0098910:CDS | 15.0% |
| !!! | TTTTTAATTTATTGCATTAG+TGG | - | chr1_3:4926010-4926029 | Msa0098910:CDS | 15.0% |
| !!! | TTTTGATATTGAAACTGATT+TGG | - | chr1_3:4925911-4925930 | Msa0098910:CDS | 20.0% |
| !! | TAAGCATTAAATACAAATCT+AGG | + | chr1_3:4925942-4925961 | None:intergenic | 20.0% |
| !!! | TTTTAGAAGTAGTAAGTTTT+TGG | - | chr1_3:4926445-4926464 | Msa0098910:CDS | 20.0% |
| !!! | TTTTGATATTGAAACTGATT+TGG | - | chr1_3:4925911-4925930 | Msa0098910:CDS | 20.0% |
| !! | TAAGCATTAAATACAAATCT+AGG | + | chr1_3:4925942-4925961 | None:intergenic | 20.0% |
| !!! | TTTTAGAAGTAGTAAGTTTT+TGG | - | chr1_3:4926445-4926464 | Msa0098910:CDS | 20.0% |
| ! | TAAGTTAACGACCTTAAATT+GGG | - | chr1_3:4925831-4925850 | Msa0098910:exon | 25.0% |
| ! | AGTAACAAAAATACAGATGA+TGG | - | chr1_3:4926224-4926243 | Msa0098910:CDS | 25.0% |
| ! | GTAACAAAAATACAGATGAT+GGG | - | chr1_3:4926225-4926244 | Msa0098910:CDS | 25.0% |
| !! | GAGTTTTTGTTAAAGGATTT+GGG | + | chr1_3:4926319-4926338 | None:intergenic | 25.0% |
| !! | TGAGTTTTTGTTAAAGGATT+TGG | + | chr1_3:4926320-4926339 | None:intergenic | 25.0% |
| ! | AATGCATGTATTTCTTTAGA+TGG | - | chr1_3:4926356-4926375 | Msa0098910:CDS | 25.0% |
| ! | GAAACTATATAGATAAAGTG+AGG | - | chr1_3:4926594-4926613 | Msa0098910:CDS | 25.0% |
| ! | TAAGTTAACGACCTTAAATT+GGG | - | chr1_3:4925831-4925850 | Msa0098910:exon | 25.0% |
| ! | AGTAACAAAAATACAGATGA+TGG | - | chr1_3:4926224-4926243 | Msa0098910:CDS | 25.0% |
| ! | GTAACAAAAATACAGATGAT+GGG | - | chr1_3:4926225-4926244 | Msa0098910:CDS | 25.0% |
| !! | GAGTTTTTGTTAAAGGATTT+GGG | + | chr1_3:4926319-4926338 | None:intergenic | 25.0% |
| !! | TGAGTTTTTGTTAAAGGATT+TGG | + | chr1_3:4926320-4926339 | None:intergenic | 25.0% |
| ! | AATGCATGTATTTCTTTAGA+TGG | - | chr1_3:4926356-4926375 | Msa0098910:CDS | 25.0% |
| ! | GAAACTATATAGATAAAGTG+AGG | - | chr1_3:4926594-4926613 | Msa0098910:CDS | 25.0% |
| GTAAGTTAACGACCTTAAAT+TGG | - | chr1_3:4925830-4925849 | Msa0098910:exon | 30.0% | |
| !! | ATAGTTTGATCAGTTGATGA+GGG | + | chr1_3:4925868-4925887 | None:intergenic | 30.0% |
| ATTTGTATCTTCTGATGAAG+AGG | - | chr1_3:4926040-4926059 | Msa0098910:CDS | 30.0% | |
| ! | TTGCACTGAGTTTTTGTTAA+AGG | + | chr1_3:4926326-4926345 | None:intergenic | 30.0% |
| TTTAACAAAAACTCAGTGCA+AGG | - | chr1_3:4926325-4926344 | Msa0098910:CDS | 30.0% | |
| ! | AAGCAGAAATTTTCGATCAA+TGG | - | chr1_3:4926520-4926539 | Msa0098910:CDS | 30.0% |
| GGTTATGAGAATATGACATT+TGG | - | chr1_3:4926557-4926576 | Msa0098910:CDS | 30.0% | |
| ! | GAATATGACATTTGGTGAAA+AGG | - | chr1_3:4926565-4926584 | Msa0098910:CDS | 30.0% |
| !!! | TCGCTTACGAAATGTTTTTT+GGG | - | chr1_3:4926724-4926743 | Msa0098910:CDS | 30.0% |
| ! | TGTTTGGAATAACCAAGTAA+AGG | + | chr1_3:4926921-4926940 | None:intergenic | 30.0% |
| TTACTTGGTTATTCCAAACA+TGG | - | chr1_3:4926921-4926940 | Msa0098910:intron | 30.0% | |
| ATCCATGAAAAATGCAATTG+CGG | - | chr1_3:4926997-4927016 | Msa0098910:intron | 30.0% | |
| GTAAGTTAACGACCTTAAAT+TGG | - | chr1_3:4925830-4925849 | Msa0098910:exon | 30.0% | |
| !! | ATAGTTTGATCAGTTGATGA+GGG | + | chr1_3:4925868-4925887 | None:intergenic | 30.0% |
| ATTTGTATCTTCTGATGAAG+AGG | - | chr1_3:4926040-4926059 | Msa0098910:CDS | 30.0% | |
| ! | TTGCACTGAGTTTTTGTTAA+AGG | + | chr1_3:4926326-4926345 | None:intergenic | 30.0% |
| TTTAACAAAAACTCAGTGCA+AGG | - | chr1_3:4926325-4926344 | Msa0098910:CDS | 30.0% | |
| ! | AAGCAGAAATTTTCGATCAA+TGG | - | chr1_3:4926520-4926539 | Msa0098910:CDS | 30.0% |
| GGTTATGAGAATATGACATT+TGG | - | chr1_3:4926557-4926576 | Msa0098910:CDS | 30.0% | |
| ! | GAATATGACATTTGGTGAAA+AGG | - | chr1_3:4926565-4926584 | Msa0098910:CDS | 30.0% |
| !!! | TCGCTTACGAAATGTTTTTT+GGG | - | chr1_3:4926724-4926743 | Msa0098910:CDS | 30.0% |
| ! | TGTTTGGAATAACCAAGTAA+AGG | + | chr1_3:4926921-4926940 | None:intergenic | 30.0% |
| TTACTTGGTTATTCCAAACA+TGG | - | chr1_3:4926921-4926940 | Msa0098910:intron | 30.0% | |
| ATCCATGAAAAATGCAATTG+CGG | - | chr1_3:4926997-4927016 | Msa0098910:intron | 30.0% | |
| ATGGGTGATAACCCAATTTA+AGG | + | chr1_3:4925845-4925864 | None:intergenic | 35.0% | |
| ! | CATAGTTTGATCAGTTGATG+AGG | + | chr1_3:4925869-4925888 | None:intergenic | 35.0% |
| TCATGAAGATGAAAAACCTC+AGG | - | chr1_3:4926115-4926134 | Msa0098910:CDS | 35.0% | |
| CTAAATATAGTTCCAACCTG+AGG | + | chr1_3:4926134-4926153 | None:intergenic | 35.0% | |
| AAGAGTTATGCCCAATCTAT+GGG | - | chr1_3:4926182-4926201 | Msa0098910:CDS | 35.0% | |
| AACTCCAAAACCCATAGATT+GGG | + | chr1_3:4926195-4926214 | None:intergenic | 35.0% | |
| TAACTCCAAAACCCATAGAT+TGG | + | chr1_3:4926196-4926215 | None:intergenic | 35.0% | |
| TGGATCAAAGTATGTGAGTA+AGG | - | chr1_3:4926277-4926296 | Msa0098910:CDS | 35.0% | |
| TAAAATAGCGTGCTTTGTCA+GGG | + | chr1_3:4926430-4926449 | None:intergenic | 35.0% | |
| ! | TTTTGGATCCTCGTTTGAAA+AGG | - | chr1_3:4926462-4926481 | Msa0098910:CDS | 35.0% |
| TTAGAACTCAATGATCAAGC+TGG | - | chr1_3:4926488-4926507 | Msa0098910:CDS | 35.0% | |
| TCAATGGTTGTTGAAGCAAA+TGG | - | chr1_3:4926536-4926555 | Msa0098910:CDS | 35.0% | |
| !!! | GTCGCTTACGAAATGTTTTT+TGG | - | chr1_3:4926723-4926742 | Msa0098910:CDS | 35.0% |
| ! | AGGGCTGCATATGAATATTT+TGG | - | chr1_3:4926761-4926780 | Msa0098910:CDS | 35.0% |
| ATGGTTTACTCCAACAAATG+GGG | + | chr1_3:4926843-4926862 | None:intergenic | 35.0% | |
| GATGGTTTACTCCAACAAAT+GGG | + | chr1_3:4926844-4926863 | None:intergenic | 35.0% | |
| TGATGGTTTACTCCAACAAA+TGG | + | chr1_3:4926845-4926864 | None:intergenic | 35.0% | |
| TTTGTTGGAGTAAACCATCA+TGG | - | chr1_3:4926845-4926864 | Msa0098910:CDS | 35.0% | |
| AGGATACTAAGTCCTTTACT+TGG | - | chr1_3:4926906-4926925 | Msa0098910:intron | 35.0% | |
| TGATCGGTAATTATGGCATT+TGG | + | chr1_3:4926971-4926990 | None:intergenic | 35.0% | |
| TCTGTCTTGATCGGTAATTA+TGG | + | chr1_3:4926978-4926997 | None:intergenic | 35.0% | |
| TTTCATGGATCTGTCTTGAT+CGG | + | chr1_3:4926987-4927006 | None:intergenic | 35.0% | |
| ATGGGTGATAACCCAATTTA+AGG | + | chr1_3:4925845-4925864 | None:intergenic | 35.0% | |
| ! | CATAGTTTGATCAGTTGATG+AGG | + | chr1_3:4925869-4925888 | None:intergenic | 35.0% |
| TCATGAAGATGAAAAACCTC+AGG | - | chr1_3:4926115-4926134 | Msa0098910:CDS | 35.0% | |
| CTAAATATAGTTCCAACCTG+AGG | + | chr1_3:4926134-4926153 | None:intergenic | 35.0% | |
| AAGAGTTATGCCCAATCTAT+GGG | - | chr1_3:4926182-4926201 | Msa0098910:CDS | 35.0% | |
| AACTCCAAAACCCATAGATT+GGG | + | chr1_3:4926195-4926214 | None:intergenic | 35.0% | |
| TAACTCCAAAACCCATAGAT+TGG | + | chr1_3:4926196-4926215 | None:intergenic | 35.0% | |
| TGGATCAAAGTATGTGAGTA+AGG | - | chr1_3:4926277-4926296 | Msa0098910:CDS | 35.0% | |
| TAAAATAGCGTGCTTTGTCA+GGG | + | chr1_3:4926430-4926449 | None:intergenic | 35.0% | |
| ! | TTTTGGATCCTCGTTTGAAA+AGG | - | chr1_3:4926462-4926481 | Msa0098910:CDS | 35.0% |
| TTAGAACTCAATGATCAAGC+TGG | - | chr1_3:4926488-4926507 | Msa0098910:CDS | 35.0% | |
| TCAATGGTTGTTGAAGCAAA+TGG | - | chr1_3:4926536-4926555 | Msa0098910:CDS | 35.0% | |
| !!! | GTCGCTTACGAAATGTTTTT+TGG | - | chr1_3:4926723-4926742 | Msa0098910:CDS | 35.0% |
| ! | AGGGCTGCATATGAATATTT+TGG | - | chr1_3:4926761-4926780 | Msa0098910:CDS | 35.0% |
| ATGGTTTACTCCAACAAATG+GGG | + | chr1_3:4926843-4926862 | None:intergenic | 35.0% | |
| GATGGTTTACTCCAACAAAT+GGG | + | chr1_3:4926844-4926863 | None:intergenic | 35.0% | |
| TGATGGTTTACTCCAACAAA+TGG | + | chr1_3:4926845-4926864 | None:intergenic | 35.0% | |
| TTTGTTGGAGTAAACCATCA+TGG | - | chr1_3:4926845-4926864 | Msa0098910:CDS | 35.0% | |
| AGGATACTAAGTCCTTTACT+TGG | - | chr1_3:4926906-4926925 | Msa0098910:intron | 35.0% | |
| TGATCGGTAATTATGGCATT+TGG | + | chr1_3:4926971-4926990 | None:intergenic | 35.0% | |
| TCTGTCTTGATCGGTAATTA+TGG | + | chr1_3:4926978-4926997 | None:intergenic | 35.0% | |
| TTTCATGGATCTGTCTTGAT+CGG | + | chr1_3:4926987-4927006 | None:intergenic | 35.0% | |
| !! | TTGATCAGTTGATGAGGGAT+GGG | + | chr1_3:4925863-4925882 | None:intergenic | 40.0% |
| !! | TTTGATCAGTTGATGAGGGA+TGG | + | chr1_3:4925864-4925883 | None:intergenic | 40.0% |
| TGATGAAGAGGAAATCAGAG+AGG | - | chr1_3:4926052-4926071 | Msa0098910:CDS | 40.0% | |
| GATGAAGAGGAAATCAGAGA+GGG | - | chr1_3:4926053-4926072 | Msa0098910:CDS | 40.0% | |
| GAAGATGAAAAACCTCAGGT+TGG | - | chr1_3:4926119-4926138 | Msa0098910:CDS | 40.0% | |
| CAAGAGTTATGCCCAATCTA+TGG | - | chr1_3:4926181-4926200 | Msa0098910:CDS | 40.0% | |
| ! | TATGCCCAATCTATGGGTTT+TGG | - | chr1_3:4926188-4926207 | Msa0098910:CDS | 40.0% |
| TTTACTCTAGCATGTAGTCG+TGG | - | chr1_3:4926257-4926276 | Msa0098910:CDS | 40.0% | |
| CTAAAATAGCGTGCTTTGTC+AGG | + | chr1_3:4926431-4926450 | None:intergenic | 40.0% | |
| ! | TCTAACCTCCTTTTCAAACG+AGG | + | chr1_3:4926473-4926492 | None:intergenic | 40.0% |
| ! | AGCCGCAATTGCATTTTTCA+TGG | + | chr1_3:4927002-4927021 | None:intergenic | 40.0% |
| !! | TTGATCAGTTGATGAGGGAT+GGG | + | chr1_3:4925863-4925882 | None:intergenic | 40.0% |
| !! | TTTGATCAGTTGATGAGGGA+TGG | + | chr1_3:4925864-4925883 | None:intergenic | 40.0% |
| TGATGAAGAGGAAATCAGAG+AGG | - | chr1_3:4926052-4926071 | Msa0098910:CDS | 40.0% | |
| GATGAAGAGGAAATCAGAGA+GGG | - | chr1_3:4926053-4926072 | Msa0098910:CDS | 40.0% | |
| GAAGATGAAAAACCTCAGGT+TGG | - | chr1_3:4926119-4926138 | Msa0098910:CDS | 40.0% | |
| CAAGAGTTATGCCCAATCTA+TGG | - | chr1_3:4926181-4926200 | Msa0098910:CDS | 40.0% | |
| ! | TATGCCCAATCTATGGGTTT+TGG | - | chr1_3:4926188-4926207 | Msa0098910:CDS | 40.0% |
| TTTACTCTAGCATGTAGTCG+TGG | - | chr1_3:4926257-4926276 | Msa0098910:CDS | 40.0% | |
| CTAAAATAGCGTGCTTTGTC+AGG | + | chr1_3:4926431-4926450 | None:intergenic | 40.0% | |
| ! | TCTAACCTCCTTTTCAAACG+AGG | + | chr1_3:4926473-4926492 | None:intergenic | 40.0% |
| ! | AGCCGCAATTGCATTTTTCA+TGG | + | chr1_3:4927002-4927021 | None:intergenic | 40.0% |
| TGGATCCTCGTTTGAAAAGG+AGG | - | chr1_3:4926465-4926484 | Msa0098910:CDS | 45.0% | |
| AAAGTGAGGAGACTACGACT+TGG | - | chr1_3:4926608-4926627 | Msa0098910:CDS | 45.0% | |
| AAGTGAGGAGACTACGACTT+GGG | - | chr1_3:4926609-4926628 | Msa0098910:CDS | 45.0% | |
| ! | ATGCCTTTTGCCCCATTTGT+TGG | - | chr1_3:4926830-4926849 | Msa0098910:CDS | 45.0% |
| ACTCCAACAAATGGGGCAAA+AGG | + | chr1_3:4926836-4926855 | None:intergenic | 45.0% | |
| ! | ACAACACAGATTGGCCATGA+TGG | + | chr1_3:4926862-4926881 | None:intergenic | 45.0% |
| TCATGGCCAATCTGTGTTGT+TGG | - | chr1_3:4926862-4926881 | Msa0098910:intron | 45.0% | |
| ! | CATGGCCAATCTGTGTTGTT+GGG | - | chr1_3:4926863-4926882 | Msa0098910:intron | 45.0% |
| ! | CTGTGCTTTATTGTCGAAGG+AGG | - | chr1_3:4926886-4926905 | Msa0098910:intron | 45.0% |
| GCATGCACTCTAACCATGTT+TGG | + | chr1_3:4926937-4926956 | None:intergenic | 45.0% | |
| ACATGGTTAGAGTGCATGCA+TGG | - | chr1_3:4926938-4926957 | Msa0098910:intron | 45.0% | |
| TGGATCCTCGTTTGAAAAGG+AGG | - | chr1_3:4926465-4926484 | Msa0098910:CDS | 45.0% | |
| AAAGTGAGGAGACTACGACT+TGG | - | chr1_3:4926608-4926627 | Msa0098910:CDS | 45.0% | |
| AAGTGAGGAGACTACGACTT+GGG | - | chr1_3:4926609-4926628 | Msa0098910:CDS | 45.0% | |
| ! | ATGCCTTTTGCCCCATTTGT+TGG | - | chr1_3:4926830-4926849 | Msa0098910:CDS | 45.0% |
| ACTCCAACAAATGGGGCAAA+AGG | + | chr1_3:4926836-4926855 | None:intergenic | 45.0% | |
| ! | ACAACACAGATTGGCCATGA+TGG | + | chr1_3:4926862-4926881 | None:intergenic | 45.0% |
| TCATGGCCAATCTGTGTTGT+TGG | - | chr1_3:4926862-4926881 | Msa0098910:intron | 45.0% | |
| ! | CATGGCCAATCTGTGTTGTT+GGG | - | chr1_3:4926863-4926882 | Msa0098910:intron | 45.0% |
| ! | CTGTGCTTTATTGTCGAAGG+AGG | - | chr1_3:4926886-4926905 | Msa0098910:intron | 45.0% |
| GCATGCACTCTAACCATGTT+TGG | + | chr1_3:4926937-4926956 | None:intergenic | 45.0% | |
| ACATGGTTAGAGTGCATGCA+TGG | - | chr1_3:4926938-4926957 | Msa0098910:intron | 45.0% | |
| AGTGAGGAGACTACGACTTG+GGG | - | chr1_3:4926610-4926629 | Msa0098910:CDS | 50.0% | |
| TTTGGGCAGATGCGAGATGT+AGG | - | chr1_3:4926741-4926760 | Msa0098910:CDS | 50.0% | |
| TTGGGCAGATGCGAGATGTA+GGG | - | chr1_3:4926742-4926761 | Msa0098910:CDS | 50.0% | |
| CACAGCCCAACAACACAGAT+TGG | + | chr1_3:4926871-4926890 | None:intergenic | 50.0% | |
| ! | GGGCTGTGCTTTATTGTCGA+AGG | - | chr1_3:4926883-4926902 | Msa0098910:intron | 50.0% |
| AGTGAGGAGACTACGACTTG+GGG | - | chr1_3:4926610-4926629 | Msa0098910:CDS | 50.0% | |
| TTTGGGCAGATGCGAGATGT+AGG | - | chr1_3:4926741-4926760 | Msa0098910:CDS | 50.0% | |
| TTGGGCAGATGCGAGATGTA+GGG | - | chr1_3:4926742-4926761 | Msa0098910:CDS | 50.0% | |
| CACAGCCCAACAACACAGAT+TGG | + | chr1_3:4926871-4926890 | None:intergenic | 50.0% | |
| ! | GGGCTGTGCTTTATTGTCGA+AGG | - | chr1_3:4926883-4926902 | Msa0098910:intron | 50.0% |
| ! | AGGAGACTACGACTTGGGGC+TGG | - | chr1_3:4926614-4926633 | Msa0098910:CDS | 60.0% |
| ACTTGGGGCTGGAGATGCTG+AGG | - | chr1_3:4926625-4926644 | Msa0098910:CDS | 60.0% | |
| ! | AGGAGACTACGACTTGGGGC+TGG | - | chr1_3:4926614-4926633 | Msa0098910:CDS | 60.0% |
| ACTTGGGGCTGGAGATGCTG+AGG | - | chr1_3:4926625-4926644 | Msa0098910:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 4925808 | 4927094 | 4925808 | ID=Msa0098910;Name=Msa0098910 |
| chr1_3 | mRNA | 4925808 | 4927094 | 4925808 | ID=Msa0098910-mRNA-1;Parent=Msa0098910;Name=Msa0098910-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|1|0.5|1|1|1|2|25|353 |
| chr1_3 | exon | 4925808 | 4926872 | 4925808 | ID=Msa0098910-mRNA-1:exon:1747;Parent=Msa0098910-mRNA-1 |
| chr1_3 | exon | 4927073 | 4927094 | 4927073 | ID=Msa0098910-mRNA-1:exon:1746;Parent=Msa0098910-mRNA-1 |
| chr1_3 | CDS | 4927073 | 4927094 | 4927073 | ID=Msa0098910-mRNA-1:cds;Parent=Msa0098910-mRNA-1 |
| chr1_3 | CDS | 4925833 | 4926872 | 4925833 | ID=Msa0098910-mRNA-1:cds;Parent=Msa0098910-mRNA-1 |
| chr1_3 | three_prime_UTR | 4925808 | 4925832 | 4925808 | ID=Msa0098910-mRNA-1:three_prime_utr;Parent=Msa0098910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
