Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0099380 | PNY12437.1 | 61.314 | 274 | 65 | 1 | 1 | 233 | 1 | 274 | 2.83e-106 | 318 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0099380 | sp|Q8L3W1|VRN1_ARATH | 34.722 | 144 | 82 | 5 | 95 | 232 | 204 | 341 | 2.49e-15 | 77.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0099380 | A0A2K3PAY3 | 61.314 | 274 | 65 | 1 | 1 | 233 | 1 | 274 | 1.35e-106 | 318 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0099380 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0099380 | MtrunA17_Chr5g0429931 | 56.557 | 244 | 65 | 1 | 31 | 233 | 5 | 248 | 8.08e-88 | 259 |
| Msa0099380 | MtrunA17_Chr3g0077361 | 55.649 | 239 | 98 | 2 | 3 | 233 | 269 | 507 | 1.04e-77 | 242 |
| Msa0099380 | MtrunA17_Chr3g0077361 | 46.816 | 267 | 77 | 3 | 1 | 224 | 20 | 264 | 1.68e-62 | 203 |
| Msa0099380 | MtrunA17_Chr3g0077411 | 51.698 | 265 | 79 | 2 | 18 | 233 | 259 | 523 | 7.69e-77 | 240 |
| Msa0099380 | MtrunA17_Chr3g0077411 | 42.105 | 266 | 86 | 4 | 1 | 221 | 1 | 243 | 5.65e-50 | 170 |
| Msa0099380 | MtrunA17_Chr3g0077451 | 53.527 | 241 | 60 | 3 | 35 | 233 | 10 | 240 | 9.42e-77 | 231 |
| Msa0099380 | MtrunA17_Chr3g0077421 | 64.000 | 175 | 51 | 2 | 59 | 231 | 36 | 200 | 4.72e-73 | 221 |
| Msa0099380 | MtrunA17_Chr3g0077441 | 64.000 | 175 | 51 | 2 | 59 | 231 | 36 | 200 | 4.72e-73 | 221 |
| Msa0099380 | MtrunA17_Chr3g0077431 | 60.795 | 176 | 58 | 2 | 59 | 233 | 36 | 201 | 5.53e-68 | 207 |
| Msa0099380 | MtrunA17_Chr4g0009491 | 51.316 | 228 | 68 | 2 | 3 | 187 | 205 | 432 | 1.61e-61 | 198 |
| Msa0099380 | MtrunA17_Chr4g0009491 | 39.437 | 213 | 66 | 2 | 35 | 206 | 11 | 201 | 2.71e-34 | 127 |
| Msa0099380 | MtrunA17_Chr3g0077381 | 47.368 | 228 | 70 | 3 | 3 | 187 | 227 | 447 | 6.69e-53 | 176 |
| Msa0099380 | MtrunA17_Chr3g0077381 | 36.134 | 238 | 65 | 4 | 30 | 224 | 29 | 222 | 5.40e-29 | 113 |
| Msa0099380 | MtrunA17_Chr3g0077461 | 41.833 | 251 | 86 | 6 | 18 | 225 | 234 | 467 | 1.38e-47 | 163 |
| Msa0099380 | MtrunA17_Chr3g0077461 | 40.088 | 227 | 65 | 3 | 36 | 221 | 22 | 218 | 1.23e-39 | 142 |
| Msa0099380 | MtrunA17_Chr5g0421921 | 42.857 | 112 | 63 | 1 | 120 | 231 | 2 | 112 | 6.68e-24 | 92.4 |
| Msa0099380 | MtrunA17_Chr5g0421731 | 42.857 | 112 | 63 | 1 | 120 | 231 | 2 | 112 | 6.68e-24 | 92.4 |
| Msa0099380 | MtrunA17_Chr5g0421851 | 42.105 | 114 | 65 | 1 | 118 | 231 | 75 | 187 | 1.03e-22 | 91.3 |
| Msa0099380 | MtrunA17_Chr4g0033961 | 35.115 | 131 | 76 | 3 | 106 | 230 | 264 | 391 | 6.45e-16 | 76.3 |
| Msa0099380 | MtrunA17_Chr1g0162441 | 37.190 | 121 | 64 | 4 | 117 | 228 | 276 | 393 | 1.83e-15 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0099380 | AT3G18990.2 | 35.172 | 145 | 82 | 5 | 95 | 233 | 204 | 342 | 1.47e-16 | 78.2 |
| Msa0099380 | AT3G18990.1 | 34.722 | 144 | 82 | 5 | 95 | 232 | 204 | 341 | 2.53e-16 | 77.0 |
| Msa0099380 | AT1G49480.3 | 32.374 | 139 | 84 | 4 | 100 | 232 | 92 | 226 | 2.55e-15 | 72.8 |
| Msa0099380 | AT1G49480.1 | 32.374 | 139 | 84 | 4 | 100 | 232 | 92 | 226 | 2.55e-15 | 72.8 |
| Msa0099380 | AT1G49480.2 | 32.374 | 139 | 84 | 4 | 100 | 232 | 92 | 226 | 2.55e-15 | 72.8 |
Find 43 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTTGGCCCTTTGAAATTT+AGG | 0.191348 | 1_3:-5556366 | None:intergenic |
| ATTGCTGTCCATGAGAATTT+TGG | 0.193809 | 1_3:-5556281 | None:intergenic |
| AATGAGTTTATCGCAAGATT+TGG | 0.267691 | 1_3:+5555687 | Msa0099380:CDS |
| AAGTGAGAGCCGTGGGAAAA+AGG | 0.303768 | 1_3:+5556006 | Msa0099380:CDS |
| TGATAGGAACATTTGGCTTC+AGG | 0.319381 | 1_3:-5556254 | None:intergenic |
| AATCTTGCGATAAACTCATT+TGG | 0.373859 | 1_3:-5555684 | None:intergenic |
| TGTTGCTACAATTACTGTTC+CGG | 0.380706 | 1_3:+5555725 | Msa0099380:CDS |
| ATGAATGGGTGAGGGAAGTA+TGG | 0.397613 | 1_3:-5554676 | None:intergenic |
| TGGAGTTTGATAGGAACATT+TGG | 0.399156 | 1_3:-5556261 | None:intergenic |
| GTTTATTGGGTTGAATTCAT+TGG | 0.425223 | 1_3:-5556074 | None:intergenic |
| AAAGAAGCCGATTGTGCTAA+AGG | 0.434126 | 1_3:+5556428 | Msa0099380:CDS |
| CATTTGCATTGATAATGATT+CGG | 0.444491 | 1_3:-5556331 | None:intergenic |
| ATCTCCACGCGACAGATTGT+TGG | 0.449174 | 1_3:-5556382 | None:intergenic |
| GAGAAGACCTGTCCGGTCAT+TGG | 0.449255 | 1_3:+5554620 | Msa0099380:CDS |
| ATTGTGACCTTTAGCACAAT+CGG | 0.459095 | 1_3:-5556435 | None:intergenic |
| CGAATCATTATCAATGCAAA+TGG | 0.470308 | 1_3:+5556332 | Msa0099380:CDS |
| TACTATTTGAGTGGCATGAA+TGG | 0.470527 | 1_3:-5554691 | None:intergenic |
| AAATTCTCATGGACAGCAAT+GGG | 0.472438 | 1_3:+5556284 | Msa0099380:CDS |
| AAACAAAGTATCCTAGTCCT+AGG | 0.485163 | 1_3:+5555963 | Msa0099380:CDS |
| ACCTGTCCGGTCATTGGCGC+CGG | 0.487744 | 1_3:+5554626 | Msa0099380:CDS |
| ATCAAACTCCAAAATTCTCA+TGG | 0.489771 | 1_3:+5556273 | Msa0099380:CDS |
| CGTTCTCCGGCGCCAATGAC+CGG | 0.495879 | 1_3:-5554632 | None:intergenic |
| AGGATTTCCTAAATTTCAAA+GGG | 0.499352 | 1_3:+5556359 | Msa0099380:CDS |
| AGTATCCTAGTCCTAGGAAA+AGG | 0.513608 | 1_3:+5555969 | Msa0099380:CDS |
| TTCAAAACTCTAAGTACTAG+TGG | 0.514800 | 1_3:+5555932 | Msa0099380:CDS |
| AAAATTCTCATGGACAGCAA+TGG | 0.519153 | 1_3:+5556283 | Msa0099380:CDS |
| GAGGATTTCCTAAATTTCAA+AGG | 0.521737 | 1_3:+5556358 | Msa0099380:CDS |
| ATGACCGGACAGGTCTTCTC+CGG | 0.525069 | 1_3:-5554617 | None:intergenic |
| ACTATTTGAGTGGCATGAAT+GGG | 0.552409 | 1_3:-5554690 | None:intergenic |
| TCCGGCGCCAATGACCGGAC+AGG | 0.576662 | 1_3:-5554627 | None:intergenic |
| AATCTGCAATGAAGCCTCGC+CGG | 0.581440 | 1_3:+5554598 | None:intergenic |
| ACCGAAACTTACTATTTGAG+TGG | 0.604521 | 1_3:-5554700 | None:intergenic |
| CTCGCCGGAGAAGACCTGTC+CGG | 0.607153 | 1_3:+5554613 | Msa0099380:CDS |
| TTGAGTGGCATGAATGGGTG+AGG | 0.609441 | 1_3:-5554685 | None:intergenic |
| TTAAAACAAGTGAGAGCCGT+GGG | 0.615648 | 1_3:+5555999 | Msa0099380:CDS |
| TAGTCCTAGGAAAAGGTCCA+AGG | 0.626880 | 1_3:+5555976 | Msa0099380:CDS |
| GCTACAATTACTGTTCCGGA+TGG | 0.637015 | 1_3:+5555729 | Msa0099380:CDS |
| AGGGCCAACAATCTGTCGCG+TGG | 0.637859 | 1_3:+5556378 | Msa0099380:CDS |
| AATTGCTAAGGCAAATCGAA+CGG | 0.646365 | 1_3:+5556114 | Msa0099380:CDS |
| GTTAAAACAAGTGAGAGCCG+TGG | 0.656728 | 1_3:+5555998 | Msa0099380:CDS |
| TGAGTGGCATGAATGGGTGA+GGG | 0.662387 | 1_3:-5554684 | None:intergenic |
| TTATCAATGCAAATGGCACG+AGG | 0.695216 | 1_3:+5556339 | Msa0099380:CDS |
| CGGACAGGTCTTCTCCGGCG+AGG | 0.701745 | 1_3:-5554612 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTCAAATCTTTGATATGTT+TGG | + | chr1_3:5554895-5554914 | Msa0099380:intron | 20.0% |
| !! | GTAGAATTAATTGACATATT+TGG | + | chr1_3:5555228-5555247 | Msa0099380:intron | 20.0% |
| !! | TCTAATTTGAACTTAGAATT+CGG | + | chr1_3:5555287-5555306 | Msa0099380:intron | 20.0% |
| !!! | ACTATTGATTTCACTTTTAA+GGG | - | chr1_3:5555425-5555444 | None:intergenic | 20.0% |
| !!! | TACTATTGATTTCACTTTTA+AGG | - | chr1_3:5555426-5555445 | None:intergenic | 20.0% |
| !! | TGAAATCAATAGTAAATTTG+TGG | + | chr1_3:5555432-5555451 | Msa0099380:intron | 20.0% |
| !! | TTCATAGAATACTATTCAAT+AGG | + | chr1_3:5555818-5555837 | Msa0099380:intron | 20.0% |
| !!! | CAATTTTTGAACGAAAAAAA+GGG | - | chr1_3:5556099-5556118 | None:intergenic | 20.0% |
| !!! | TTTTGGTTTAAAGTAAATGT+TGG | + | chr1_3:5556157-5556176 | Msa0099380:intron | 20.0% |
| !! | TTTCAAATCTTTGATATGTT+TGG | + | chr1_3:5554895-5554914 | Msa0099380:intron | 20.0% |
| !! | GTAGAATTAATTGACATATT+TGG | + | chr1_3:5555228-5555247 | Msa0099380:intron | 20.0% |
| !! | TCTAATTTGAACTTAGAATT+CGG | + | chr1_3:5555287-5555306 | Msa0099380:intron | 20.0% |
| !!! | ACTATTGATTTCACTTTTAA+GGG | - | chr1_3:5555425-5555444 | None:intergenic | 20.0% |
| !!! | TACTATTGATTTCACTTTTA+AGG | - | chr1_3:5555426-5555445 | None:intergenic | 20.0% |
| !! | TGAAATCAATAGTAAATTTG+TGG | + | chr1_3:5555432-5555451 | Msa0099380:intron | 20.0% |
| !! | TTCATAGAATACTATTCAAT+AGG | + | chr1_3:5555818-5555837 | Msa0099380:intron | 20.0% |
| !!! | CAATTTTTGAACGAAAAAAA+GGG | - | chr1_3:5556099-5556118 | None:intergenic | 20.0% |
| !!! | TTTTGGTTTAAAGTAAATGT+TGG | + | chr1_3:5556157-5556176 | Msa0099380:intron | 20.0% |
| !!! | TTCTATCTTTCTTTTGAGTA+TGG | + | chr1_3:5554723-5554742 | Msa0099380:intron | 25.0% |
| !! | TGTCTATTGTCTTAGATTTT+GGG | + | chr1_3:5555059-5555078 | Msa0099380:intron | 25.0% |
| ! | AACATACATGTGTATATTGT+TGG | - | chr1_3:5555168-5555187 | None:intergenic | 25.0% |
| ! | ACAATATACACATGTATGTT+TGG | + | chr1_3:5555168-5555187 | Msa0099380:intron | 25.0% |
| ! | ATCAAACATAAGCAATGTTT+AGG | - | chr1_3:5555321-5555340 | None:intergenic | 25.0% |
| !! | ACGTTTTCTTTTGTAACAAA+TGG | + | chr1_3:5555789-5555808 | Msa0099380:intron | 25.0% |
| ! | GAATACTATTCAATAGGATA+TGG | + | chr1_3:5555824-5555843 | Msa0099380:intron | 25.0% |
| ! | TACCTTTCTTTCAATTATGA+AGG | + | chr1_3:5555851-5555870 | Msa0099380:intron | 25.0% |
| ! | TTCCTTCATAATTGAAAGAA+AGG | - | chr1_3:5555856-5555875 | None:intergenic | 25.0% |
| ! | AACGAAAAAAAGGGTTTATT+GGG | - | chr1_3:5556090-5556109 | None:intergenic | 25.0% |
| !! | GCAATTTTTGAACGAAAAAA+AGG | - | chr1_3:5556100-5556119 | None:intergenic | 25.0% |
| !! | TTTTCGTTCAAAAATTGCTA+AGG | + | chr1_3:5556102-5556121 | Msa0099380:CDS | 25.0% |
| !!! | CATTTGCATTGATAATGATT+CGG | - | chr1_3:5556334-5556353 | None:intergenic | 25.0% |
| ! | AGGATTTCCTAAATTTCAAA+GGG | + | chr1_3:5556359-5556378 | Msa0099380:CDS | 25.0% |
| !!! | TTCTATCTTTCTTTTGAGTA+TGG | + | chr1_3:5554723-5554742 | Msa0099380:intron | 25.0% |
| !! | TGTCTATTGTCTTAGATTTT+GGG | + | chr1_3:5555059-5555078 | Msa0099380:intron | 25.0% |
| ! | AACATACATGTGTATATTGT+TGG | - | chr1_3:5555168-5555187 | None:intergenic | 25.0% |
| ! | ACAATATACACATGTATGTT+TGG | + | chr1_3:5555168-5555187 | Msa0099380:intron | 25.0% |
| ! | ATCAAACATAAGCAATGTTT+AGG | - | chr1_3:5555321-5555340 | None:intergenic | 25.0% |
| !! | ACGTTTTCTTTTGTAACAAA+TGG | + | chr1_3:5555789-5555808 | Msa0099380:intron | 25.0% |
| ! | GAATACTATTCAATAGGATA+TGG | + | chr1_3:5555824-5555843 | Msa0099380:intron | 25.0% |
| ! | TACCTTTCTTTCAATTATGA+AGG | + | chr1_3:5555851-5555870 | Msa0099380:intron | 25.0% |
| ! | TTCCTTCATAATTGAAAGAA+AGG | - | chr1_3:5555856-5555875 | None:intergenic | 25.0% |
| ! | AACGAAAAAAAGGGTTTATT+GGG | - | chr1_3:5556090-5556109 | None:intergenic | 25.0% |
| !! | GCAATTTTTGAACGAAAAAA+AGG | - | chr1_3:5556100-5556119 | None:intergenic | 25.0% |
| !! | TTTTCGTTCAAAAATTGCTA+AGG | + | chr1_3:5556102-5556121 | Msa0099380:CDS | 25.0% |
| !!! | CATTTGCATTGATAATGATT+CGG | - | chr1_3:5556334-5556353 | None:intergenic | 25.0% |
| ! | AGGATTTCCTAAATTTCAAA+GGG | + | chr1_3:5556359-5556378 | Msa0099380:CDS | 25.0% |
| !!! | AAATGTTTTGATACGTTCTC+CGG | - | chr1_3:5554648-5554667 | None:intergenic | 30.0% |
| ! | GTGTCTATTGTCTTAGATTT+TGG | + | chr1_3:5555058-5555077 | Msa0099380:intron | 30.0% |
| GTGTATATTGTTGGACAATA+AGG | - | chr1_3:5555159-5555178 | None:intergenic | 30.0% | |
| AATTTGAACTTAGAATTCGG+AGG | + | chr1_3:5555290-5555309 | Msa0099380:intron | 30.0% | |
| ATCACCTTAGATTCAACATA+GGG | - | chr1_3:5555350-5555369 | None:intergenic | 30.0% | |
| TTGTGGCTAAAAATCATGTT+TGG | + | chr1_3:5555449-5555468 | Msa0099380:intron | 30.0% | |
| ! | CTAAAAATCATGTTTGGAGT+AGG | + | chr1_3:5555455-5555474 | Msa0099380:intron | 30.0% |
| !! | TTTTGATTCACTTTTGTGAG+TGG | - | chr1_3:5555575-5555594 | None:intergenic | 30.0% |
| !!! | ACCAATTCTCTTTTGAAGTT+TGG | + | chr1_3:5555609-5555628 | Msa0099380:intron | 30.0% |
| ACCAAACTTCAAAAGAGAAT+TGG | - | chr1_3:5555613-5555632 | None:intergenic | 30.0% | |
| ! | AGTTTGGTCTTTAGTATATC+AGG | + | chr1_3:5555625-5555644 | Msa0099380:intron | 30.0% |
| AATCTTGCGATAAACTCATT+TGG | - | chr1_3:5555687-5555706 | None:intergenic | 30.0% | |
| AATGAGTTTATCGCAAGATT+TGG | + | chr1_3:5555687-5555706 | Msa0099380:CDS | 30.0% | |
| ACTATTCAATAGGATATGGT+TGG | + | chr1_3:5555828-5555847 | Msa0099380:intron | 30.0% | |
| !!! | CTAGTACTTAGAGTTTTGAA+CGG | - | chr1_3:5555932-5555951 | None:intergenic | 30.0% |
| TTCAAAACTCTAAGTACTAG+TGG | + | chr1_3:5555932-5555951 | Msa0099380:CDS | 30.0% | |
| !! | GTTTATTGGGTTGAATTCAT+TGG | - | chr1_3:5556077-5556096 | None:intergenic | 30.0% |
| GAACGAAAAAAAGGGTTTAT+TGG | - | chr1_3:5556091-5556110 | None:intergenic | 30.0% | |
| !!! | GGATTATACTTTGGAGTTTT+TGG | + | chr1_3:5556140-5556159 | Msa0099380:intron | 30.0% |
| GAAAGAGAGATCAATTTAAG+TGG | - | chr1_3:5556196-5556215 | None:intergenic | 30.0% | |
| !!! | TGAGAATTTTGGAGTTTGAT+AGG | - | chr1_3:5556273-5556292 | None:intergenic | 30.0% |
| ATCAAACTCCAAAATTCTCA+TGG | + | chr1_3:5556273-5556292 | Msa0099380:CDS | 30.0% | |
| CGAATCATTATCAATGCAAA+TGG | + | chr1_3:5556332-5556351 | Msa0099380:CDS | 30.0% | |
| GAGGATTTCCTAAATTTCAA+AGG | + | chr1_3:5556358-5556377 | Msa0099380:CDS | 30.0% | |
| !!! | AAATGTTTTGATACGTTCTC+CGG | - | chr1_3:5554648-5554667 | None:intergenic | 30.0% |
| ! | GTGTCTATTGTCTTAGATTT+TGG | + | chr1_3:5555058-5555077 | Msa0099380:intron | 30.0% |
| GTGTATATTGTTGGACAATA+AGG | - | chr1_3:5555159-5555178 | None:intergenic | 30.0% | |
| AATTTGAACTTAGAATTCGG+AGG | + | chr1_3:5555290-5555309 | Msa0099380:intron | 30.0% | |
| ATCACCTTAGATTCAACATA+GGG | - | chr1_3:5555350-5555369 | None:intergenic | 30.0% | |
| TTGTGGCTAAAAATCATGTT+TGG | + | chr1_3:5555449-5555468 | Msa0099380:intron | 30.0% | |
| ! | CTAAAAATCATGTTTGGAGT+AGG | + | chr1_3:5555455-5555474 | Msa0099380:intron | 30.0% |
| !! | TTTTGATTCACTTTTGTGAG+TGG | - | chr1_3:5555575-5555594 | None:intergenic | 30.0% |
| !!! | ACCAATTCTCTTTTGAAGTT+TGG | + | chr1_3:5555609-5555628 | Msa0099380:intron | 30.0% |
| ACCAAACTTCAAAAGAGAAT+TGG | - | chr1_3:5555613-5555632 | None:intergenic | 30.0% | |
| ! | AGTTTGGTCTTTAGTATATC+AGG | + | chr1_3:5555625-5555644 | Msa0099380:intron | 30.0% |
| AATCTTGCGATAAACTCATT+TGG | - | chr1_3:5555687-5555706 | None:intergenic | 30.0% | |
| AATGAGTTTATCGCAAGATT+TGG | + | chr1_3:5555687-5555706 | Msa0099380:CDS | 30.0% | |
| ACTATTCAATAGGATATGGT+TGG | + | chr1_3:5555828-5555847 | Msa0099380:intron | 30.0% | |
| !!! | CTAGTACTTAGAGTTTTGAA+CGG | - | chr1_3:5555932-5555951 | None:intergenic | 30.0% |
| TTCAAAACTCTAAGTACTAG+TGG | + | chr1_3:5555932-5555951 | Msa0099380:CDS | 30.0% | |
| !! | GTTTATTGGGTTGAATTCAT+TGG | - | chr1_3:5556077-5556096 | None:intergenic | 30.0% |
| GAACGAAAAAAAGGGTTTAT+TGG | - | chr1_3:5556091-5556110 | None:intergenic | 30.0% | |
| !!! | GGATTATACTTTGGAGTTTT+TGG | + | chr1_3:5556140-5556159 | Msa0099380:intron | 30.0% |
| GAAAGAGAGATCAATTTAAG+TGG | - | chr1_3:5556196-5556215 | None:intergenic | 30.0% | |
| !!! | TGAGAATTTTGGAGTTTGAT+AGG | - | chr1_3:5556273-5556292 | None:intergenic | 30.0% |
| ATCAAACTCCAAAATTCTCA+TGG | + | chr1_3:5556273-5556292 | Msa0099380:CDS | 30.0% | |
| CGAATCATTATCAATGCAAA+TGG | + | chr1_3:5556332-5556351 | Msa0099380:CDS | 30.0% | |
| GAGGATTTCCTAAATTTCAA+AGG | + | chr1_3:5556358-5556377 | Msa0099380:CDS | 30.0% | |
| ACTATTTGAGTGGCATGAAT+GGG | - | chr1_3:5554693-5554712 | None:intergenic | 35.0% | |
| TACTATTTGAGTGGCATGAA+TGG | - | chr1_3:5554694-5554713 | None:intergenic | 35.0% | |
| GCCACTCAAATAGTAAGTTT+CGG | + | chr1_3:5554699-5554718 | Msa0099380:intron | 35.0% | |
| ACCGAAACTTACTATTTGAG+TGG | - | chr1_3:5554703-5554722 | None:intergenic | 35.0% | |
| !! | TTAGATTTTGGGTGAACATG+TGG | + | chr1_3:5555070-5555089 | Msa0099380:intron | 35.0% |
| AAACAACTACACAAGTGAGT+TGG | - | chr1_3:5555099-5555118 | None:intergenic | 35.0% | |
| ACTATGTTGGATCATCACAT+TGG | - | chr1_3:5555127-5555146 | None:intergenic | 35.0% | |
| ! | TGACATATTTGGAATGTGCT+CGG | + | chr1_3:5555239-5555258 | Msa0099380:intron | 35.0% |
| CATTCCCTATGTTGAATCTA+AGG | + | chr1_3:5555343-5555362 | Msa0099380:intron | 35.0% | |
| GATCACCTTAGATTCAACAT+AGG | - | chr1_3:5555351-5555370 | None:intergenic | 35.0% | |
| TGTACACACTTAGTTGAATC+TGG | + | chr1_3:5555376-5555395 | Msa0099380:intron | 35.0% | |
| ! | TTGGTCTTTAGTATATCAGG+CGG | + | chr1_3:5555628-5555647 | Msa0099380:intron | 35.0% |
| TGTTGCTACAATTACTGTTC+CGG | + | chr1_3:5555725-5555744 | Msa0099380:CDS | 35.0% | |
| CATTTCCAAATACAACCATC+CGG | - | chr1_3:5555747-5555766 | None:intergenic | 35.0% | |
| GAAATGGAACTGAAGAAATG+CGG | + | chr1_3:5555761-5555780 | Msa0099380:intron | 35.0% | |
| !!! | GGACTAGGATACTTTGTTTT+TGG | - | chr1_3:5555962-5555981 | None:intergenic | 35.0% |
| ! | AAACAAAGTATCCTAGTCCT+AGG | + | chr1_3:5555963-5555982 | Msa0099380:CDS | 35.0% |
| !! | TGTTTTTGTCCTTTTTCCCA+CGG | - | chr1_3:5556018-5556037 | None:intergenic | 35.0% |
| ! | TGCTTCTAAAAAAGCAGAGA+AGG | + | chr1_3:5556048-5556067 | Msa0099380:CDS | 35.0% |
| AATTGCTAAGGCAAATCGAA+CGG | + | chr1_3:5556114-5556133 | Msa0099380:CDS | 35.0% | |
| TGGAGTTTGATAGGAACATT+TGG | - | chr1_3:5556264-5556283 | None:intergenic | 35.0% | |
| ! | ATTGCTGTCCATGAGAATTT+TGG | - | chr1_3:5556284-5556303 | None:intergenic | 35.0% |
| AAAATTCTCATGGACAGCAA+TGG | + | chr1_3:5556283-5556302 | Msa0099380:CDS | 35.0% | |
| AAATTCTCATGGACAGCAAT+GGG | + | chr1_3:5556284-5556303 | Msa0099380:CDS | 35.0% | |
| !! | TTGTTGGCCCTTTGAAATTT+AGG | - | chr1_3:5556369-5556388 | None:intergenic | 35.0% |
| ATTGTGACCTTTAGCACAAT+CGG | - | chr1_3:5556438-5556457 | None:intergenic | 35.0% | |
| ACTATTTGAGTGGCATGAAT+GGG | - | chr1_3:5554693-5554712 | None:intergenic | 35.0% | |
| TACTATTTGAGTGGCATGAA+TGG | - | chr1_3:5554694-5554713 | None:intergenic | 35.0% | |
| GCCACTCAAATAGTAAGTTT+CGG | + | chr1_3:5554699-5554718 | Msa0099380:intron | 35.0% | |
| ACCGAAACTTACTATTTGAG+TGG | - | chr1_3:5554703-5554722 | None:intergenic | 35.0% | |
| !! | TTAGATTTTGGGTGAACATG+TGG | + | chr1_3:5555070-5555089 | Msa0099380:intron | 35.0% |
| AAACAACTACACAAGTGAGT+TGG | - | chr1_3:5555099-5555118 | None:intergenic | 35.0% | |
| ACTATGTTGGATCATCACAT+TGG | - | chr1_3:5555127-5555146 | None:intergenic | 35.0% | |
| ! | TGACATATTTGGAATGTGCT+CGG | + | chr1_3:5555239-5555258 | Msa0099380:intron | 35.0% |
| CATTCCCTATGTTGAATCTA+AGG | + | chr1_3:5555343-5555362 | Msa0099380:intron | 35.0% | |
| GATCACCTTAGATTCAACAT+AGG | - | chr1_3:5555351-5555370 | None:intergenic | 35.0% | |
| TGTACACACTTAGTTGAATC+TGG | + | chr1_3:5555376-5555395 | Msa0099380:intron | 35.0% | |
| ! | TTGGTCTTTAGTATATCAGG+CGG | + | chr1_3:5555628-5555647 | Msa0099380:intron | 35.0% |
| TGTTGCTACAATTACTGTTC+CGG | + | chr1_3:5555725-5555744 | Msa0099380:CDS | 35.0% | |
| CATTTCCAAATACAACCATC+CGG | - | chr1_3:5555747-5555766 | None:intergenic | 35.0% | |
| GAAATGGAACTGAAGAAATG+CGG | + | chr1_3:5555761-5555780 | Msa0099380:intron | 35.0% | |
| !!! | GGACTAGGATACTTTGTTTT+TGG | - | chr1_3:5555962-5555981 | None:intergenic | 35.0% |
| ! | AAACAAAGTATCCTAGTCCT+AGG | + | chr1_3:5555963-5555982 | Msa0099380:CDS | 35.0% |
| !! | TGTTTTTGTCCTTTTTCCCA+CGG | - | chr1_3:5556018-5556037 | None:intergenic | 35.0% |
| ! | TGCTTCTAAAAAAGCAGAGA+AGG | + | chr1_3:5556048-5556067 | Msa0099380:CDS | 35.0% |
| AATTGCTAAGGCAAATCGAA+CGG | + | chr1_3:5556114-5556133 | Msa0099380:CDS | 35.0% | |
| TGGAGTTTGATAGGAACATT+TGG | - | chr1_3:5556264-5556283 | None:intergenic | 35.0% | |
| ! | ATTGCTGTCCATGAGAATTT+TGG | - | chr1_3:5556284-5556303 | None:intergenic | 35.0% |
| AAAATTCTCATGGACAGCAA+TGG | + | chr1_3:5556283-5556302 | Msa0099380:CDS | 35.0% | |
| AAATTCTCATGGACAGCAAT+GGG | + | chr1_3:5556284-5556303 | Msa0099380:CDS | 35.0% | |
| !! | TTGTTGGCCCTTTGAAATTT+AGG | - | chr1_3:5556369-5556388 | None:intergenic | 35.0% |
| ATTGTGACCTTTAGCACAAT+CGG | - | chr1_3:5556438-5556457 | None:intergenic | 35.0% | |
| ACATGCACTTAATGCATGCA+TGG | - | chr1_3:5554804-5554823 | None:intergenic | 40.0% | |
| ! | GAAAGAGTGATGACGTTCAA+TGG | - | chr1_3:5554847-5554866 | None:intergenic | 40.0% |
| ACGTCATCACTCTTTCTGTT+TGG | + | chr1_3:5554851-5554870 | Msa0099380:intron | 40.0% | |
| ATAATCATGCTAGCTAGCTG+TGG | + | chr1_3:5554936-5554955 | Msa0099380:intron | 40.0% | |
| TGTGATGATCCAACATAGTG+TGG | + | chr1_3:5555128-5555147 | Msa0099380:intron | 40.0% | |
| ! | GACATATTTGGAATGTGCTC+GGG | + | chr1_3:5555240-5555259 | Msa0099380:intron | 40.0% |
| CGGATGGTTGTATTTGGAAA+TGG | + | chr1_3:5555745-5555764 | Msa0099380:intron | 40.0% | |
| AGTATCCTAGTCCTAGGAAA+AGG | + | chr1_3:5555969-5555988 | Msa0099380:CDS | 40.0% | |
| ! | TTAACCTTGGACCTTTTCCT+AGG | - | chr1_3:5555983-5556002 | None:intergenic | 40.0% |
| !!! | GCTCTCACTTGTTTTAACCT+TGG | - | chr1_3:5555996-5556015 | None:intergenic | 40.0% |
| TTAAAACAAGTGAGAGCCGT+GGG | + | chr1_3:5555999-5556018 | Msa0099380:CDS | 40.0% | |
| GAACGGTGAGGATTATACTT+TGG | + | chr1_3:5556131-5556150 | Msa0099380:intron | 40.0% | |
| ! | TGATAGGAACATTTGGCTTC+AGG | - | chr1_3:5556257-5556276 | None:intergenic | 40.0% |
| TTATCAATGCAAATGGCACG+AGG | + | chr1_3:5556339-5556358 | Msa0099380:CDS | 40.0% | |
| AAAGAAGCCGATTGTGCTAA+AGG | + | chr1_3:5556428-5556447 | Msa0099380:CDS | 40.0% | |
| ACATGCACTTAATGCATGCA+TGG | - | chr1_3:5554804-5554823 | None:intergenic | 40.0% | |
| ! | GAAAGAGTGATGACGTTCAA+TGG | - | chr1_3:5554847-5554866 | None:intergenic | 40.0% |
| ACGTCATCACTCTTTCTGTT+TGG | + | chr1_3:5554851-5554870 | Msa0099380:intron | 40.0% | |
| ATAATCATGCTAGCTAGCTG+TGG | + | chr1_3:5554936-5554955 | Msa0099380:intron | 40.0% | |
| TGTGATGATCCAACATAGTG+TGG | + | chr1_3:5555128-5555147 | Msa0099380:intron | 40.0% | |
| ! | GACATATTTGGAATGTGCTC+GGG | + | chr1_3:5555240-5555259 | Msa0099380:intron | 40.0% |
| CGGATGGTTGTATTTGGAAA+TGG | + | chr1_3:5555745-5555764 | Msa0099380:intron | 40.0% | |
| AGTATCCTAGTCCTAGGAAA+AGG | + | chr1_3:5555969-5555988 | Msa0099380:CDS | 40.0% | |
| ! | TTAACCTTGGACCTTTTCCT+AGG | - | chr1_3:5555983-5556002 | None:intergenic | 40.0% |
| !!! | GCTCTCACTTGTTTTAACCT+TGG | - | chr1_3:5555996-5556015 | None:intergenic | 40.0% |
| TTAAAACAAGTGAGAGCCGT+GGG | + | chr1_3:5555999-5556018 | Msa0099380:CDS | 40.0% | |
| GAACGGTGAGGATTATACTT+TGG | + | chr1_3:5556131-5556150 | Msa0099380:intron | 40.0% | |
| ! | TGATAGGAACATTTGGCTTC+AGG | - | chr1_3:5556257-5556276 | None:intergenic | 40.0% |
| TTATCAATGCAAATGGCACG+AGG | + | chr1_3:5556339-5556358 | Msa0099380:CDS | 40.0% | |
| AAAGAAGCCGATTGTGCTAA+AGG | + | chr1_3:5556428-5556447 | Msa0099380:CDS | 40.0% | |
| ATGAATGGGTGAGGGAAGTA+TGG | - | chr1_3:5554679-5554698 | None:intergenic | 45.0% | |
| AAGGAGAAGCCACACTATGT+TGG | - | chr1_3:5555140-5555159 | None:intergenic | 45.0% | |
| GCTACAATTACTGTTCCGGA+TGG | + | chr1_3:5555729-5555748 | Msa0099380:CDS | 45.0% | |
| CTGTTCCGGATGGTTGTATT+TGG | + | chr1_3:5555739-5555758 | Msa0099380:intron | 45.0% | |
| ! | TTGGACCTTTTCCTAGGACT+AGG | - | chr1_3:5555977-5555996 | None:intergenic | 45.0% |
| TAGTCCTAGGAAAAGGTCCA+AGG | + | chr1_3:5555976-5555995 | Msa0099380:CDS | 45.0% | |
| GTTAAAACAAGTGAGAGCCG+TGG | + | chr1_3:5555998-5556017 | Msa0099380:CDS | 45.0% | |
| ATGAATGGGTGAGGGAAGTA+TGG | - | chr1_3:5554679-5554698 | None:intergenic | 45.0% | |
| AAGGAGAAGCCACACTATGT+TGG | - | chr1_3:5555140-5555159 | None:intergenic | 45.0% | |
| GCTACAATTACTGTTCCGGA+TGG | + | chr1_3:5555729-5555748 | Msa0099380:CDS | 45.0% | |
| CTGTTCCGGATGGTTGTATT+TGG | + | chr1_3:5555739-5555758 | Msa0099380:intron | 45.0% | |
| ! | TTGGACCTTTTCCTAGGACT+AGG | - | chr1_3:5555977-5555996 | None:intergenic | 45.0% |
| TAGTCCTAGGAAAAGGTCCA+AGG | + | chr1_3:5555976-5555995 | Msa0099380:CDS | 45.0% | |
| GTTAAAACAAGTGAGAGCCG+TGG | + | chr1_3:5555998-5556017 | Msa0099380:CDS | 45.0% | |
| TGAGTGGCATGAATGGGTGA+GGG | - | chr1_3:5554687-5554706 | None:intergenic | 50.0% | |
| TTGAGTGGCATGAATGGGTG+AGG | - | chr1_3:5554688-5554707 | None:intergenic | 50.0% | |
| ATGCTAGCTAGCTGTGGTTC+TGG | + | chr1_3:5554942-5554961 | Msa0099380:intron | 50.0% | |
| AAGTGAGAGCCGTGGGAAAA+AGG | + | chr1_3:5556006-5556025 | Msa0099380:CDS | 50.0% | |
| CTAAGGCAAATCGAACGGTG+AGG | + | chr1_3:5556119-5556138 | Msa0099380:intron | 50.0% | |
| ATCTCCACGCGACAGATTGT+TGG | - | chr1_3:5556385-5556404 | None:intergenic | 50.0% | |
| TGAGTGGCATGAATGGGTGA+GGG | - | chr1_3:5554687-5554706 | None:intergenic | 50.0% | |
| TTGAGTGGCATGAATGGGTG+AGG | - | chr1_3:5554688-5554707 | None:intergenic | 50.0% | |
| ATGCTAGCTAGCTGTGGTTC+TGG | + | chr1_3:5554942-5554961 | Msa0099380:intron | 50.0% | |
| AAGTGAGAGCCGTGGGAAAA+AGG | + | chr1_3:5556006-5556025 | Msa0099380:CDS | 50.0% | |
| CTAAGGCAAATCGAACGGTG+AGG | + | chr1_3:5556119-5556138 | Msa0099380:intron | 50.0% | |
| ATCTCCACGCGACAGATTGT+TGG | - | chr1_3:5556385-5556404 | None:intergenic | 50.0% | |
| ATGACCGGACAGGTCTTCTC+CGG | - | chr1_3:5554620-5554639 | None:intergenic | 55.0% | |
| GAGAAGACCTGTCCGGTCAT+TGG | + | chr1_3:5554620-5554639 | Msa0099380:CDS | 55.0% | |
| ATGACCGGACAGGTCTTCTC+CGG | - | chr1_3:5554620-5554639 | None:intergenic | 55.0% | |
| GAGAAGACCTGTCCGGTCAT+TGG | + | chr1_3:5554620-5554639 | Msa0099380:CDS | 55.0% | |
| AGGGCCAACAATCTGTCGCG+TGG | + | chr1_3:5556378-5556397 | Msa0099380:CDS | 60.0% | |
| AGGGCCAACAATCTGTCGCG+TGG | + | chr1_3:5556378-5556397 | Msa0099380:CDS | 60.0% | |
| CTCGCCGGAGAAGACCTGTC+CGG | + | chr1_3:5554613-5554632 | Msa0099380:CDS | 65.0% | |
| ACCTGTCCGGTCATTGGCGC+CGG | + | chr1_3:5554626-5554645 | Msa0099380:CDS | 65.0% | |
| CGTTCTCCGGCGCCAATGAC+CGG | - | chr1_3:5554635-5554654 | None:intergenic | 65.0% | |
| CTCGCCGGAGAAGACCTGTC+CGG | + | chr1_3:5554613-5554632 | Msa0099380:CDS | 65.0% | |
| ACCTGTCCGGTCATTGGCGC+CGG | + | chr1_3:5554626-5554645 | Msa0099380:CDS | 65.0% | |
| CGTTCTCCGGCGCCAATGAC+CGG | - | chr1_3:5554635-5554654 | None:intergenic | 65.0% | |
| CGGACAGGTCTTCTCCGGCG+AGG | - | chr1_3:5554615-5554634 | None:intergenic | 70.0% | |
| TCCGGCGCCAATGACCGGAC+AGG | - | chr1_3:5554630-5554649 | None:intergenic | 70.0% | |
| CGGACAGGTCTTCTCCGGCG+AGG | - | chr1_3:5554615-5554634 | None:intergenic | 70.0% | |
| TCCGGCGCCAATGACCGGAC+AGG | - | chr1_3:5554630-5554649 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 5554606 | 5556485 | 5554606 | ID=Msa0099380;Name=Msa0099380 |
| chr1_3 | mRNA | 5554606 | 5556485 | 5554606 | ID=Msa0099380-mRNA-1;Parent=Msa0099380;Name=Msa0099380-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0|0|1|1|1|4|0|233 |
| chr1_3 | exon | 5554606 | 5554710 | 5554606 | ID=Msa0099380-mRNA-1:exon:2069;Parent=Msa0099380-mRNA-1 |
| chr1_3 | exon | 5555678 | 5555750 | 5555678 | ID=Msa0099380-mRNA-1:exon:2070;Parent=Msa0099380-mRNA-1 |
| chr1_3 | exon | 5555873 | 5556135 | 5555873 | ID=Msa0099380-mRNA-1:exon:2071;Parent=Msa0099380-mRNA-1 |
| chr1_3 | exon | 5556225 | 5556485 | 5556225 | ID=Msa0099380-mRNA-1:exon:2072;Parent=Msa0099380-mRNA-1 |
| chr1_3 | CDS | 5554606 | 5554710 | 5554606 | ID=Msa0099380-mRNA-1:cds;Parent=Msa0099380-mRNA-1 |
| chr1_3 | CDS | 5555678 | 5555750 | 5555678 | ID=Msa0099380-mRNA-1:cds;Parent=Msa0099380-mRNA-1 |
| chr1_3 | CDS | 5555873 | 5556135 | 5555873 | ID=Msa0099380-mRNA-1:cds;Parent=Msa0099380-mRNA-1 |
| chr1_3 | CDS | 5556225 | 5556485 | 5556225 | ID=Msa0099380-mRNA-1:cds;Parent=Msa0099380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
