Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0099500 | sp|Q8L3W1|VRN1_ARATH | 30.000 | 340 | 147 | 7 | 21 | 273 | 6 | 341 | 1.00e-39 | 144 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0099500 | A0A2K3PAY3 | 73.723 | 274 | 72 | 0 | 1 | 274 | 1 | 274 | 1.45e-144 | 416 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0099500 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0099500 | MtrunA17_Chr5g0429931 | 68.852 | 244 | 76 | 0 | 31 | 274 | 5 | 248 | 8.45e-121 | 345 |
| Msa0099500 | MtrunA17_Chr3g0077451 | 67.220 | 241 | 68 | 2 | 35 | 274 | 10 | 240 | 4.88e-113 | 325 |
| Msa0099500 | MtrunA17_Chr3g0077411 | 63.019 | 265 | 90 | 2 | 18 | 274 | 259 | 523 | 2.93e-109 | 325 |
| Msa0099500 | MtrunA17_Chr3g0077411 | 52.256 | 266 | 100 | 3 | 1 | 262 | 1 | 243 | 1.33e-81 | 254 |
| Msa0099500 | MtrunA17_Chr3g0077421 | 66.667 | 210 | 58 | 2 | 65 | 272 | 1 | 200 | 1.61e-96 | 282 |
| Msa0099500 | MtrunA17_Chr3g0077441 | 66.667 | 210 | 58 | 2 | 65 | 272 | 1 | 200 | 1.61e-96 | 282 |
| Msa0099500 | MtrunA17_Chr3g0077431 | 64.455 | 211 | 64 | 2 | 65 | 274 | 1 | 201 | 2.58e-92 | 271 |
| Msa0099500 | MtrunA17_Chr4g0009491 | 63.158 | 228 | 82 | 1 | 3 | 228 | 205 | 432 | 2.32e-90 | 274 |
| Msa0099500 | MtrunA17_Chr4g0009491 | 52.113 | 213 | 80 | 1 | 35 | 247 | 11 | 201 | 6.58e-63 | 204 |
| Msa0099500 | MtrunA17_Chr3g0077361 | 56.554 | 267 | 92 | 3 | 1 | 265 | 20 | 264 | 2.35e-89 | 274 |
| Msa0099500 | MtrunA17_Chr3g0077361 | 53.650 | 274 | 90 | 2 | 3 | 274 | 269 | 507 | 1.35e-88 | 272 |
| Msa0099500 | MtrunA17_Chr3g0077381 | 59.211 | 228 | 84 | 2 | 3 | 228 | 227 | 447 | 2.70e-81 | 251 |
| Msa0099500 | MtrunA17_Chr3g0077381 | 48.319 | 238 | 77 | 3 | 30 | 265 | 29 | 222 | 1.20e-59 | 196 |
| Msa0099500 | MtrunA17_Chr3g0077461 | 51.793 | 251 | 102 | 5 | 18 | 266 | 234 | 467 | 9.16e-77 | 240 |
| Msa0099500 | MtrunA17_Chr3g0077461 | 51.055 | 237 | 85 | 3 | 36 | 271 | 22 | 228 | 8.23e-70 | 223 |
| Msa0099500 | MtrunA17_Chr1g0162441 | 45.455 | 99 | 54 | 0 | 21 | 119 | 7 | 105 | 1.07e-28 | 113 |
| Msa0099500 | MtrunA17_Chr1g0162441 | 37.190 | 121 | 64 | 4 | 158 | 269 | 276 | 393 | 3.20e-14 | 72.0 |
| Msa0099500 | MtrunA17_Chr3g0131891 | 26.644 | 289 | 175 | 6 | 20 | 271 | 18 | 306 | 5.35e-26 | 104 |
| Msa0099500 | MtrunA17_Chr3g0103181 | 28.986 | 276 | 161 | 8 | 20 | 267 | 11 | 279 | 1.42e-24 | 99.8 |
| Msa0099500 | MtrunA17_Chr4g0033961 | 41.176 | 102 | 60 | 0 | 18 | 119 | 3 | 104 | 1.90e-24 | 101 |
| Msa0099500 | MtrunA17_Chr4g0033961 | 35.115 | 131 | 76 | 3 | 147 | 271 | 264 | 391 | 9.38e-15 | 73.6 |
| Msa0099500 | MtrunA17_Chr5g0421921 | 42.857 | 112 | 63 | 1 | 161 | 272 | 2 | 112 | 2.49e-23 | 91.7 |
| Msa0099500 | MtrunA17_Chr5g0421731 | 42.857 | 112 | 63 | 1 | 161 | 272 | 2 | 112 | 2.49e-23 | 91.7 |
| Msa0099500 | MtrunA17_Chr1g0162411 | 43.820 | 89 | 50 | 0 | 21 | 109 | 7 | 95 | 5.03e-23 | 97.8 |
| Msa0099500 | MtrunA17_Chr3g0103171 | 28.517 | 263 | 155 | 5 | 36 | 267 | 5 | 265 | 6.91e-23 | 94.7 |
| Msa0099500 | MtrunA17_Chr7g0233561 | 26.421 | 299 | 173 | 7 | 20 | 271 | 17 | 315 | 2.10e-22 | 94.7 |
| Msa0099500 | MtrunA17_Chr8g0390841 | 25.497 | 302 | 164 | 8 | 21 | 269 | 39 | 332 | 2.83e-22 | 95.9 |
| Msa0099500 | MtrunA17_Chr5g0421851 | 42.105 | 114 | 65 | 1 | 159 | 272 | 75 | 187 | 5.23e-22 | 90.5 |
| Msa0099500 | MtrunA17_Chr1g0163071 | 27.891 | 294 | 144 | 9 | 37 | 269 | 2 | 288 | 2.18e-21 | 91.7 |
| Msa0099500 | MtrunA17_Chr1g0208771 | 26.027 | 292 | 146 | 8 | 36 | 269 | 12 | 291 | 5.80e-20 | 89.0 |
| Msa0099500 | MtrunA17_Chr7g0233521 | 24.542 | 273 | 160 | 7 | 37 | 271 | 2 | 266 | 8.39e-20 | 86.7 |
| Msa0099500 | MtrunA17_Chr7g0233571 | 27.215 | 158 | 115 | 0 | 12 | 169 | 1 | 158 | 9.48e-18 | 79.7 |
| Msa0099500 | MtrunA17_Chr5g0419201 | 30.827 | 133 | 85 | 1 | 21 | 153 | 16 | 141 | 1.34e-17 | 78.6 |
| Msa0099500 | MtrunA17_Chr3g0103191 | 29.439 | 214 | 123 | 5 | 21 | 209 | 12 | 222 | 1.88e-17 | 79.7 |
| Msa0099500 | MtrunA17_Chr3g0103151 | 39.000 | 100 | 59 | 1 | 20 | 119 | 11 | 108 | 7.06e-17 | 75.9 |
| Msa0099500 | MtrunA17_Chr1g0162421 | 44.828 | 58 | 32 | 0 | 35 | 92 | 7 | 64 | 7.54e-17 | 73.2 |
| Msa0099500 | MtrunA17_Chr1g0154161 | 25.623 | 281 | 173 | 8 | 20 | 267 | 29 | 306 | 1.68e-16 | 78.2 |
| Msa0099500 | MtrunA17_Chr1g0163221 | 23.826 | 298 | 178 | 9 | 13 | 269 | 3 | 292 | 3.68e-15 | 74.3 |
| Msa0099500 | MtrunA17_Chr1g0154131 | 26.740 | 273 | 157 | 8 | 34 | 264 | 195 | 466 | 3.80e-15 | 75.1 |
| Msa0099500 | MtrunA17_Chr4g0067431 | 23.779 | 307 | 170 | 8 | 20 | 269 | 14 | 313 | 1.06e-14 | 72.8 |
| Msa0099500 | MtrunA17_Chr7g0233531 | 22.143 | 280 | 158 | 5 | 37 | 271 | 2 | 266 | 2.18e-14 | 71.6 |
| Msa0099500 | MtrunA17_Chr6g0467351 | 32.374 | 139 | 85 | 3 | 10 | 142 | 4 | 139 | 1.40e-13 | 68.6 |
| Msa0099500 | MtrunA17_Chr7g0233541 | 30.973 | 113 | 74 | 1 | 37 | 149 | 2 | 110 | 3.30e-13 | 68.2 |
| Msa0099500 | MtrunA17_Chr3g0103201 | 25.463 | 216 | 133 | 4 | 80 | 267 | 5 | 220 | 4.61e-12 | 63.9 |
| Msa0099500 | MtrunA17_Chr1g0163061 | 30.702 | 114 | 78 | 1 | 10 | 122 | 4 | 117 | 6.35e-12 | 64.3 |
| Msa0099500 | MtrunA17_Chr1g0171611 | 23.019 | 265 | 181 | 7 | 19 | 266 | 7 | 265 | 1.05e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0099500 | AT3G18990.1 | 30.000 | 340 | 147 | 7 | 21 | 273 | 6 | 341 | 1.02e-40 | 144 |
| Msa0099500 | AT3G18990.2 | 30.205 | 341 | 147 | 7 | 21 | 274 | 6 | 342 | 1.18e-40 | 144 |
| Msa0099500 | AT1G49475.1 | 37.302 | 126 | 74 | 2 | 4 | 129 | 21 | 141 | 7.19e-19 | 82.4 |
| Msa0099500 | AT4G01580.1 | 36.036 | 111 | 71 | 0 | 14 | 124 | 23 | 133 | 1.26e-18 | 82.0 |
| Msa0099500 | AT3G18960.2 | 36.036 | 111 | 71 | 0 | 14 | 124 | 23 | 133 | 1.51e-18 | 81.6 |
| Msa0099500 | AT3G18960.1 | 36.036 | 111 | 71 | 0 | 14 | 124 | 23 | 133 | 1.52e-18 | 82.0 |
| Msa0099500 | AT1G49480.3 | 33.083 | 133 | 79 | 4 | 147 | 273 | 98 | 226 | 5.54e-14 | 70.1 |
| Msa0099500 | AT1G49480.1 | 33.083 | 133 | 79 | 4 | 147 | 273 | 98 | 226 | 5.54e-14 | 70.1 |
| Msa0099500 | AT1G49480.2 | 33.083 | 133 | 79 | 4 | 147 | 273 | 98 | 226 | 5.54e-14 | 70.1 |
| Msa0099500 | AT3G18960.3 | 35.955 | 89 | 57 | 0 | 36 | 124 | 8 | 96 | 4.45e-13 | 66.2 |
| Msa0099500 | AT4G31690.1 | 23.108 | 251 | 163 | 9 | 12 | 257 | 7 | 232 | 3.81e-11 | 62.4 |
Find 53 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTTCCGGATGGTTGTATT+TGG | 0.168306 | 1_3:+5698645 | Msa0099500:CDS |
| TTGTTGGCCCTTTGAAATTT+AGG | 0.191348 | 1_3:-5699273 | None:intergenic |
| ATTGCTGTCCATGAGAATTT+TGG | 0.193809 | 1_3:-5699188 | None:intergenic |
| AATGAGTTTATCGCAAGATT+TGG | 0.267691 | 1_3:+5698593 | Msa0099500:CDS |
| AAGTGAGAGCCGTGGGAAAA+AGG | 0.303768 | 1_3:+5698913 | Msa0099500:CDS |
| TGATAGGAACATTTGGCTTC+AGG | 0.319381 | 1_3:-5699161 | None:intergenic |
| TTCCTTCATAATTGAAAGAA+AGG | 0.357561 | 1_3:-5698760 | None:intergenic |
| AATCTTGCGATAAACTCATT+TGG | 0.373859 | 1_3:-5698590 | None:intergenic |
| GGATGGTTGTATTTGGGAAA+TGG | 0.374541 | 1_3:+5698652 | Msa0099500:CDS |
| TGTTGCTACAATTACTGTTC+CGG | 0.380706 | 1_3:+5698631 | Msa0099500:CDS |
| TGTTCCGGATGGTTGTATTT+GGG | 0.395192 | 1_3:+5698646 | Msa0099500:CDS |
| ATGAATGGGTGAGGGAAGTA+TGG | 0.397613 | 1_3:-5697582 | None:intergenic |
| TGGAGTTTGATAGGAACATT+TGG | 0.399156 | 1_3:-5699168 | None:intergenic |
| GAATACTATTCAATAGGATA+TGG | 0.402689 | 1_3:+5698731 | Msa0099500:CDS |
| TACCTTTCTTTCAATTATGA+AGG | 0.405245 | 1_3:+5698758 | Msa0099500:CDS |
| GTTTATTGGGTTGAATTCAT+TGG | 0.425223 | 1_3:-5698981 | None:intergenic |
| AAAGAAGCCGATTGTGCTAA+AGG | 0.434126 | 1_3:+5699335 | Msa0099500:CDS |
| CATTTGCATTGATAATGATT+CGG | 0.444491 | 1_3:-5699238 | None:intergenic |
| ATCTCCACGCGACAGATTGT+TGG | 0.449174 | 1_3:-5699289 | None:intergenic |
| GAGAAGACCTGTCCGGTCAT+TGG | 0.449255 | 1_3:+5697526 | Msa0099500:CDS |
| TTCATAGAATACTATTCAAT+AGG | 0.452230 | 1_3:+5698725 | Msa0099500:CDS |
| ATTGTGACCTTTAGCACAAT+CGG | 0.459095 | 1_3:-5699342 | None:intergenic |
| CGAATCATTATCAATGCAAA+TGG | 0.470308 | 1_3:+5699239 | Msa0099500:CDS |
| TACTATTTGAGTGGCATGAA+TGG | 0.470527 | 1_3:-5697597 | None:intergenic |
| AAATTCTCATGGACAGCAAT+GGG | 0.472438 | 1_3:+5699191 | Msa0099500:CDS |
| AAACAAAGTATCCTAGTCCT+AGG | 0.485163 | 1_3:+5698870 | Msa0099500:CDS |
| ACCTGTCCGGTCATTGGCGC+CGG | 0.487744 | 1_3:+5697532 | Msa0099500:CDS |
| ATCAAACTCCAAAATTCTCA+TGG | 0.489771 | 1_3:+5699180 | Msa0099500:CDS |
| CGTTCTCCGGCGCCAATGAC+CGG | 0.495879 | 1_3:-5697538 | None:intergenic |
| AGGATTTCCTAAATTTCAAA+GGG | 0.499352 | 1_3:+5699266 | Msa0099500:CDS |
| AGTATCCTAGTCCTAGGAAA+AGG | 0.513608 | 1_3:+5698876 | Msa0099500:CDS |
| TTCAAAACTCTAAGTACTAG+TGG | 0.514800 | 1_3:+5698839 | Msa0099500:CDS |
| AAAATTCTCATGGACAGCAA+TGG | 0.519153 | 1_3:+5699190 | Msa0099500:CDS |
| GAGGATTTCCTAAATTTCAA+AGG | 0.521737 | 1_3:+5699265 | Msa0099500:CDS |
| ATGACCGGACAGGTCTTCTC+CGG | 0.525069 | 1_3:-5697523 | None:intergenic |
| ACTATTTGAGTGGCATGAAT+GGG | 0.552409 | 1_3:-5697596 | None:intergenic |
| ATTTCCCAAATACAACCATC+CGG | 0.559087 | 1_3:-5698650 | None:intergenic |
| TCCGGCGCCAATGACCGGAC+AGG | 0.576662 | 1_3:-5697533 | None:intergenic |
| AATCTGCAATGAAGCCTCGC+CGG | 0.581440 | 1_3:+5697504 | None:intergenic |
| ACTATTCAATAGGATATGGT+TGG | 0.585720 | 1_3:+5698735 | Msa0099500:CDS |
| ACCGAAACTTACTATTTGAG+TGG | 0.604521 | 1_3:-5697606 | None:intergenic |
| CTCGCCGGAGAAGACCTGTC+CGG | 0.607153 | 1_3:+5697519 | Msa0099500:CDS |
| TTGAGTGGCATGAATGGGTG+AGG | 0.609441 | 1_3:-5697591 | None:intergenic |
| TTAAAACAAGTGAGAGCCGT+GGG | 0.615648 | 1_3:+5698906 | Msa0099500:CDS |
| TAGTCCTAGGAAAAGGTCCA+AGG | 0.626880 | 1_3:+5698883 | Msa0099500:CDS |
| GCTACAATTACTGTTCCGGA+TGG | 0.637015 | 1_3:+5698635 | Msa0099500:CDS |
| AGGGCCAACAATCTGTCGCG+TGG | 0.637859 | 1_3:+5699285 | Msa0099500:CDS |
| AATTGCTAAGGCAAATCGAA+CGG | 0.646365 | 1_3:+5699021 | Msa0099500:CDS |
| GTTAAAACAAGTGAGAGCCG+TGG | 0.656728 | 1_3:+5698905 | Msa0099500:CDS |
| TGAGTGGCATGAATGGGTGA+GGG | 0.662387 | 1_3:-5697590 | None:intergenic |
| GAAATGGAACTGAAGAAATG+CGG | 0.682734 | 1_3:+5698668 | Msa0099500:CDS |
| TTATCAATGCAAATGGCACG+AGG | 0.695216 | 1_3:+5699246 | Msa0099500:CDS |
| CGGACAGGTCTTCTCCGGCG+AGG | 0.701745 | 1_3:-5697518 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTCAAATCTTTGATATGTT+TGG | + | chr1_3:5697801-5697820 | Msa0099500:intron | 20.0% |
| !! | GTAGAATTAATTGACATATT+TGG | + | chr1_3:5698134-5698153 | Msa0099500:intron | 20.0% |
| !! | TCTAATTTGAACTTAGAATT+CGG | + | chr1_3:5698193-5698212 | Msa0099500:intron | 20.0% |
| !!! | ACTATTGATTTCACTTTTAA+GGG | - | chr1_3:5698331-5698350 | None:intergenic | 20.0% |
| !!! | TACTATTGATTTCACTTTTA+AGG | - | chr1_3:5698332-5698351 | None:intergenic | 20.0% |
| !! | TGAAATCAATAGTAAATTTG+TGG | + | chr1_3:5698338-5698357 | Msa0099500:intron | 20.0% |
| !! | TTCATAGAATACTATTCAAT+AGG | + | chr1_3:5698725-5698744 | Msa0099500:CDS | 20.0% |
| !!! | CAATTTTTGAACGAAAAAAA+GGG | - | chr1_3:5699006-5699025 | None:intergenic | 20.0% |
| !!! | TTTTGGTTTAAAGTAAATGT+TGG | + | chr1_3:5699064-5699083 | Msa0099500:intron | 20.0% |
| !! | TTTCAAATCTTTGATATGTT+TGG | + | chr1_3:5697801-5697820 | Msa0099500:intron | 20.0% |
| !! | GTAGAATTAATTGACATATT+TGG | + | chr1_3:5698134-5698153 | Msa0099500:intron | 20.0% |
| !! | TCTAATTTGAACTTAGAATT+CGG | + | chr1_3:5698193-5698212 | Msa0099500:intron | 20.0% |
| !!! | ACTATTGATTTCACTTTTAA+GGG | - | chr1_3:5698331-5698350 | None:intergenic | 20.0% |
| !!! | TACTATTGATTTCACTTTTA+AGG | - | chr1_3:5698332-5698351 | None:intergenic | 20.0% |
| !! | TGAAATCAATAGTAAATTTG+TGG | + | chr1_3:5698338-5698357 | Msa0099500:intron | 20.0% |
| !! | TTCATAGAATACTATTCAAT+AGG | + | chr1_3:5698725-5698744 | Msa0099500:CDS | 20.0% |
| !!! | CAATTTTTGAACGAAAAAAA+GGG | - | chr1_3:5699006-5699025 | None:intergenic | 20.0% |
| !!! | TTTTGGTTTAAAGTAAATGT+TGG | + | chr1_3:5699064-5699083 | Msa0099500:intron | 20.0% |
| !!! | TTCTATCTTTCTTTTGAGTA+TGG | + | chr1_3:5697629-5697648 | Msa0099500:intron | 25.0% |
| !! | TGTCTATTGTCTTAGATTTT+GGG | + | chr1_3:5697965-5697984 | Msa0099500:intron | 25.0% |
| ! | AACATACATGTGTATATTGT+TGG | - | chr1_3:5698074-5698093 | None:intergenic | 25.0% |
| ! | ACAATATACACATGTATGTT+TGG | + | chr1_3:5698074-5698093 | Msa0099500:intron | 25.0% |
| ! | ATCAAACATAAGCAATGTTT+AGG | - | chr1_3:5698227-5698246 | None:intergenic | 25.0% |
| !! | ACGTTTTCTTTTGTAACAAA+TGG | + | chr1_3:5698696-5698715 | Msa0099500:CDS | 25.0% |
| ! | GAATACTATTCAATAGGATA+TGG | + | chr1_3:5698731-5698750 | Msa0099500:CDS | 25.0% |
| ! | TACCTTTCTTTCAATTATGA+AGG | + | chr1_3:5698758-5698777 | Msa0099500:CDS | 25.0% |
| ! | TTCCTTCATAATTGAAAGAA+AGG | - | chr1_3:5698763-5698782 | None:intergenic | 25.0% |
| ! | AACGAAAAAAAGGGTTTATT+GGG | - | chr1_3:5698997-5699016 | None:intergenic | 25.0% |
| !! | GCAATTTTTGAACGAAAAAA+AGG | - | chr1_3:5699007-5699026 | None:intergenic | 25.0% |
| !! | TTTTCGTTCAAAAATTGCTA+AGG | + | chr1_3:5699009-5699028 | Msa0099500:CDS | 25.0% |
| !!! | CATTTGCATTGATAATGATT+CGG | - | chr1_3:5699241-5699260 | None:intergenic | 25.0% |
| ! | AGGATTTCCTAAATTTCAAA+GGG | + | chr1_3:5699266-5699285 | Msa0099500:CDS | 25.0% |
| !!! | TTCTATCTTTCTTTTGAGTA+TGG | + | chr1_3:5697629-5697648 | Msa0099500:intron | 25.0% |
| !! | TGTCTATTGTCTTAGATTTT+GGG | + | chr1_3:5697965-5697984 | Msa0099500:intron | 25.0% |
| ! | AACATACATGTGTATATTGT+TGG | - | chr1_3:5698074-5698093 | None:intergenic | 25.0% |
| ! | ACAATATACACATGTATGTT+TGG | + | chr1_3:5698074-5698093 | Msa0099500:intron | 25.0% |
| ! | ATCAAACATAAGCAATGTTT+AGG | - | chr1_3:5698227-5698246 | None:intergenic | 25.0% |
| !! | ACGTTTTCTTTTGTAACAAA+TGG | + | chr1_3:5698696-5698715 | Msa0099500:CDS | 25.0% |
| ! | GAATACTATTCAATAGGATA+TGG | + | chr1_3:5698731-5698750 | Msa0099500:CDS | 25.0% |
| ! | TACCTTTCTTTCAATTATGA+AGG | + | chr1_3:5698758-5698777 | Msa0099500:CDS | 25.0% |
| ! | TTCCTTCATAATTGAAAGAA+AGG | - | chr1_3:5698763-5698782 | None:intergenic | 25.0% |
| ! | AACGAAAAAAAGGGTTTATT+GGG | - | chr1_3:5698997-5699016 | None:intergenic | 25.0% |
| !! | GCAATTTTTGAACGAAAAAA+AGG | - | chr1_3:5699007-5699026 | None:intergenic | 25.0% |
| !! | TTTTCGTTCAAAAATTGCTA+AGG | + | chr1_3:5699009-5699028 | Msa0099500:CDS | 25.0% |
| !!! | CATTTGCATTGATAATGATT+CGG | - | chr1_3:5699241-5699260 | None:intergenic | 25.0% |
| ! | AGGATTTCCTAAATTTCAAA+GGG | + | chr1_3:5699266-5699285 | Msa0099500:CDS | 25.0% |
| !!! | AAATGTTTTGATACGTTCTC+CGG | - | chr1_3:5697554-5697573 | None:intergenic | 30.0% |
| ! | GTGTCTATTGTCTTAGATTT+TGG | + | chr1_3:5697964-5697983 | Msa0099500:intron | 30.0% |
| GTGTATATTGTTGGACAATA+AGG | - | chr1_3:5698065-5698084 | None:intergenic | 30.0% | |
| AATTTGAACTTAGAATTCGG+AGG | + | chr1_3:5698196-5698215 | Msa0099500:intron | 30.0% | |
| ATCACCTTAGATTCAACATA+GGG | - | chr1_3:5698256-5698275 | None:intergenic | 30.0% | |
| TTGTGGCTAAAAATCATGTT+TGG | + | chr1_3:5698355-5698374 | Msa0099500:intron | 30.0% | |
| ! | CTAAAAATCATGTTTGGAGT+AGG | + | chr1_3:5698361-5698380 | Msa0099500:intron | 30.0% |
| !! | TTTTGATTCACTTTTGTGAG+TGG | - | chr1_3:5698481-5698500 | None:intergenic | 30.0% |
| !!! | ACCAATTCTCTTTTGAAGTT+TGG | + | chr1_3:5698515-5698534 | Msa0099500:intron | 30.0% |
| ACCAAACTTCAAAAGAGAAT+TGG | - | chr1_3:5698519-5698538 | None:intergenic | 30.0% | |
| ! | AGTTTGGTCTTTAGTATATC+AGG | + | chr1_3:5698531-5698550 | Msa0099500:intron | 30.0% |
| AATCTTGCGATAAACTCATT+TGG | - | chr1_3:5698593-5698612 | None:intergenic | 30.0% | |
| AATGAGTTTATCGCAAGATT+TGG | + | chr1_3:5698593-5698612 | Msa0099500:CDS | 30.0% | |
| ACTATTCAATAGGATATGGT+TGG | + | chr1_3:5698735-5698754 | Msa0099500:CDS | 30.0% | |
| !!! | CTAGTACTTAGAGTTTTGAA+CGG | - | chr1_3:5698839-5698858 | None:intergenic | 30.0% |
| TTCAAAACTCTAAGTACTAG+TGG | + | chr1_3:5698839-5698858 | Msa0099500:CDS | 30.0% | |
| !! | GTTTATTGGGTTGAATTCAT+TGG | - | chr1_3:5698984-5699003 | None:intergenic | 30.0% |
| GAACGAAAAAAAGGGTTTAT+TGG | - | chr1_3:5698998-5699017 | None:intergenic | 30.0% | |
| !!! | GGATTATACTTTGGAGTTTT+TGG | + | chr1_3:5699047-5699066 | Msa0099500:intron | 30.0% |
| GAAAGAGAGATCAATTTAAG+TGG | - | chr1_3:5699103-5699122 | None:intergenic | 30.0% | |
| !!! | TGAGAATTTTGGAGTTTGAT+AGG | - | chr1_3:5699180-5699199 | None:intergenic | 30.0% |
| ATCAAACTCCAAAATTCTCA+TGG | + | chr1_3:5699180-5699199 | Msa0099500:CDS | 30.0% | |
| CGAATCATTATCAATGCAAA+TGG | + | chr1_3:5699239-5699258 | Msa0099500:CDS | 30.0% | |
| GAGGATTTCCTAAATTTCAA+AGG | + | chr1_3:5699265-5699284 | Msa0099500:CDS | 30.0% | |
| !!! | AAATGTTTTGATACGTTCTC+CGG | - | chr1_3:5697554-5697573 | None:intergenic | 30.0% |
| ! | GTGTCTATTGTCTTAGATTT+TGG | + | chr1_3:5697964-5697983 | Msa0099500:intron | 30.0% |
| GTGTATATTGTTGGACAATA+AGG | - | chr1_3:5698065-5698084 | None:intergenic | 30.0% | |
| AATTTGAACTTAGAATTCGG+AGG | + | chr1_3:5698196-5698215 | Msa0099500:intron | 30.0% | |
| ATCACCTTAGATTCAACATA+GGG | - | chr1_3:5698256-5698275 | None:intergenic | 30.0% | |
| TTGTGGCTAAAAATCATGTT+TGG | + | chr1_3:5698355-5698374 | Msa0099500:intron | 30.0% | |
| ! | CTAAAAATCATGTTTGGAGT+AGG | + | chr1_3:5698361-5698380 | Msa0099500:intron | 30.0% |
| !! | TTTTGATTCACTTTTGTGAG+TGG | - | chr1_3:5698481-5698500 | None:intergenic | 30.0% |
| !!! | ACCAATTCTCTTTTGAAGTT+TGG | + | chr1_3:5698515-5698534 | Msa0099500:intron | 30.0% |
| ACCAAACTTCAAAAGAGAAT+TGG | - | chr1_3:5698519-5698538 | None:intergenic | 30.0% | |
| ! | AGTTTGGTCTTTAGTATATC+AGG | + | chr1_3:5698531-5698550 | Msa0099500:intron | 30.0% |
| AATCTTGCGATAAACTCATT+TGG | - | chr1_3:5698593-5698612 | None:intergenic | 30.0% | |
| AATGAGTTTATCGCAAGATT+TGG | + | chr1_3:5698593-5698612 | Msa0099500:CDS | 30.0% | |
| ACTATTCAATAGGATATGGT+TGG | + | chr1_3:5698735-5698754 | Msa0099500:CDS | 30.0% | |
| !!! | CTAGTACTTAGAGTTTTGAA+CGG | - | chr1_3:5698839-5698858 | None:intergenic | 30.0% |
| TTCAAAACTCTAAGTACTAG+TGG | + | chr1_3:5698839-5698858 | Msa0099500:CDS | 30.0% | |
| !! | GTTTATTGGGTTGAATTCAT+TGG | - | chr1_3:5698984-5699003 | None:intergenic | 30.0% |
| GAACGAAAAAAAGGGTTTAT+TGG | - | chr1_3:5698998-5699017 | None:intergenic | 30.0% | |
| !!! | GGATTATACTTTGGAGTTTT+TGG | + | chr1_3:5699047-5699066 | Msa0099500:intron | 30.0% |
| GAAAGAGAGATCAATTTAAG+TGG | - | chr1_3:5699103-5699122 | None:intergenic | 30.0% | |
| !!! | TGAGAATTTTGGAGTTTGAT+AGG | - | chr1_3:5699180-5699199 | None:intergenic | 30.0% |
| ATCAAACTCCAAAATTCTCA+TGG | + | chr1_3:5699180-5699199 | Msa0099500:CDS | 30.0% | |
| CGAATCATTATCAATGCAAA+TGG | + | chr1_3:5699239-5699258 | Msa0099500:CDS | 30.0% | |
| GAGGATTTCCTAAATTTCAA+AGG | + | chr1_3:5699265-5699284 | Msa0099500:CDS | 30.0% | |
| ACTATTTGAGTGGCATGAAT+GGG | - | chr1_3:5697599-5697618 | None:intergenic | 35.0% | |
| TACTATTTGAGTGGCATGAA+TGG | - | chr1_3:5697600-5697619 | None:intergenic | 35.0% | |
| GCCACTCAAATAGTAAGTTT+CGG | + | chr1_3:5697605-5697624 | Msa0099500:intron | 35.0% | |
| ACCGAAACTTACTATTTGAG+TGG | - | chr1_3:5697609-5697628 | None:intergenic | 35.0% | |
| !! | TTAGATTTTGGGTGAACATG+TGG | + | chr1_3:5697976-5697995 | Msa0099500:intron | 35.0% |
| AAACAACTACACAAGTGAGT+TGG | - | chr1_3:5698005-5698024 | None:intergenic | 35.0% | |
| ACTATGTTGGATCATCACAT+TGG | - | chr1_3:5698033-5698052 | None:intergenic | 35.0% | |
| ! | TGACATATTTGGAATGTGCT+CGG | + | chr1_3:5698145-5698164 | Msa0099500:intron | 35.0% |
| CATTCCCTATGTTGAATCTA+AGG | + | chr1_3:5698249-5698268 | Msa0099500:intron | 35.0% | |
| GATCACCTTAGATTCAACAT+AGG | - | chr1_3:5698257-5698276 | None:intergenic | 35.0% | |
| TGTACACACTTAGTTGAATC+TGG | + | chr1_3:5698282-5698301 | Msa0099500:intron | 35.0% | |
| ! | TTGGTCTTTAGTATATCAGG+CGG | + | chr1_3:5698534-5698553 | Msa0099500:intron | 35.0% |
| TGTTGCTACAATTACTGTTC+CGG | + | chr1_3:5698631-5698650 | Msa0099500:CDS | 35.0% | |
| ATTTCCCAAATACAACCATC+CGG | - | chr1_3:5698653-5698672 | None:intergenic | 35.0% | |
| GAAATGGAACTGAAGAAATG+CGG | + | chr1_3:5698668-5698687 | Msa0099500:CDS | 35.0% | |
| !!! | GGACTAGGATACTTTGTTTT+TGG | - | chr1_3:5698869-5698888 | None:intergenic | 35.0% |
| ! | AAACAAAGTATCCTAGTCCT+AGG | + | chr1_3:5698870-5698889 | Msa0099500:CDS | 35.0% |
| !! | TGTTTTTGTCCTTTTTCCCA+CGG | - | chr1_3:5698925-5698944 | None:intergenic | 35.0% |
| ! | TGCTTCTAAAAAAGCAGAGA+AGG | + | chr1_3:5698955-5698974 | Msa0099500:CDS | 35.0% |
| AATTGCTAAGGCAAATCGAA+CGG | + | chr1_3:5699021-5699040 | Msa0099500:CDS | 35.0% | |
| TGGAGTTTGATAGGAACATT+TGG | - | chr1_3:5699171-5699190 | None:intergenic | 35.0% | |
| ! | ATTGCTGTCCATGAGAATTT+TGG | - | chr1_3:5699191-5699210 | None:intergenic | 35.0% |
| AAAATTCTCATGGACAGCAA+TGG | + | chr1_3:5699190-5699209 | Msa0099500:CDS | 35.0% | |
| AAATTCTCATGGACAGCAAT+GGG | + | chr1_3:5699191-5699210 | Msa0099500:CDS | 35.0% | |
| !! | TTGTTGGCCCTTTGAAATTT+AGG | - | chr1_3:5699276-5699295 | None:intergenic | 35.0% |
| ATTGTGACCTTTAGCACAAT+CGG | - | chr1_3:5699345-5699364 | None:intergenic | 35.0% | |
| ACTATTTGAGTGGCATGAAT+GGG | - | chr1_3:5697599-5697618 | None:intergenic | 35.0% | |
| TACTATTTGAGTGGCATGAA+TGG | - | chr1_3:5697600-5697619 | None:intergenic | 35.0% | |
| GCCACTCAAATAGTAAGTTT+CGG | + | chr1_3:5697605-5697624 | Msa0099500:intron | 35.0% | |
| ACCGAAACTTACTATTTGAG+TGG | - | chr1_3:5697609-5697628 | None:intergenic | 35.0% | |
| !! | TTAGATTTTGGGTGAACATG+TGG | + | chr1_3:5697976-5697995 | Msa0099500:intron | 35.0% |
| AAACAACTACACAAGTGAGT+TGG | - | chr1_3:5698005-5698024 | None:intergenic | 35.0% | |
| ACTATGTTGGATCATCACAT+TGG | - | chr1_3:5698033-5698052 | None:intergenic | 35.0% | |
| ! | TGACATATTTGGAATGTGCT+CGG | + | chr1_3:5698145-5698164 | Msa0099500:intron | 35.0% |
| CATTCCCTATGTTGAATCTA+AGG | + | chr1_3:5698249-5698268 | Msa0099500:intron | 35.0% | |
| GATCACCTTAGATTCAACAT+AGG | - | chr1_3:5698257-5698276 | None:intergenic | 35.0% | |
| TGTACACACTTAGTTGAATC+TGG | + | chr1_3:5698282-5698301 | Msa0099500:intron | 35.0% | |
| ! | TTGGTCTTTAGTATATCAGG+CGG | + | chr1_3:5698534-5698553 | Msa0099500:intron | 35.0% |
| TGTTGCTACAATTACTGTTC+CGG | + | chr1_3:5698631-5698650 | Msa0099500:CDS | 35.0% | |
| ATTTCCCAAATACAACCATC+CGG | - | chr1_3:5698653-5698672 | None:intergenic | 35.0% | |
| GAAATGGAACTGAAGAAATG+CGG | + | chr1_3:5698668-5698687 | Msa0099500:CDS | 35.0% | |
| !!! | GGACTAGGATACTTTGTTTT+TGG | - | chr1_3:5698869-5698888 | None:intergenic | 35.0% |
| ! | AAACAAAGTATCCTAGTCCT+AGG | + | chr1_3:5698870-5698889 | Msa0099500:CDS | 35.0% |
| !! | TGTTTTTGTCCTTTTTCCCA+CGG | - | chr1_3:5698925-5698944 | None:intergenic | 35.0% |
| ! | TGCTTCTAAAAAAGCAGAGA+AGG | + | chr1_3:5698955-5698974 | Msa0099500:CDS | 35.0% |
| AATTGCTAAGGCAAATCGAA+CGG | + | chr1_3:5699021-5699040 | Msa0099500:CDS | 35.0% | |
| TGGAGTTTGATAGGAACATT+TGG | - | chr1_3:5699171-5699190 | None:intergenic | 35.0% | |
| ! | ATTGCTGTCCATGAGAATTT+TGG | - | chr1_3:5699191-5699210 | None:intergenic | 35.0% |
| AAAATTCTCATGGACAGCAA+TGG | + | chr1_3:5699190-5699209 | Msa0099500:CDS | 35.0% | |
| AAATTCTCATGGACAGCAAT+GGG | + | chr1_3:5699191-5699210 | Msa0099500:CDS | 35.0% | |
| !! | TTGTTGGCCCTTTGAAATTT+AGG | - | chr1_3:5699276-5699295 | None:intergenic | 35.0% |
| ATTGTGACCTTTAGCACAAT+CGG | - | chr1_3:5699345-5699364 | None:intergenic | 35.0% | |
| ACATGCACTTAATGCATGCA+TGG | - | chr1_3:5697710-5697729 | None:intergenic | 40.0% | |
| ! | GAAAGAGTGATGACGTTCAA+TGG | - | chr1_3:5697753-5697772 | None:intergenic | 40.0% |
| ACGTCATCACTCTTTCTGTT+TGG | + | chr1_3:5697757-5697776 | Msa0099500:intron | 40.0% | |
| ATAATCATGCTAGCTAGCTG+TGG | + | chr1_3:5697842-5697861 | Msa0099500:intron | 40.0% | |
| TGTGATGATCCAACATAGTG+TGG | + | chr1_3:5698034-5698053 | Msa0099500:intron | 40.0% | |
| ! | GACATATTTGGAATGTGCTC+GGG | + | chr1_3:5698146-5698165 | Msa0099500:intron | 40.0% |
| TGTTCCGGATGGTTGTATTT+GGG | + | chr1_3:5698646-5698665 | Msa0099500:CDS | 40.0% | |
| GGATGGTTGTATTTGGGAAA+TGG | + | chr1_3:5698652-5698671 | Msa0099500:CDS | 40.0% | |
| AGTATCCTAGTCCTAGGAAA+AGG | + | chr1_3:5698876-5698895 | Msa0099500:CDS | 40.0% | |
| ! | TTAACCTTGGACCTTTTCCT+AGG | - | chr1_3:5698890-5698909 | None:intergenic | 40.0% |
| !!! | GCTCTCACTTGTTTTAACCT+TGG | - | chr1_3:5698903-5698922 | None:intergenic | 40.0% |
| TTAAAACAAGTGAGAGCCGT+GGG | + | chr1_3:5698906-5698925 | Msa0099500:CDS | 40.0% | |
| GAACGGTGAGGATTATACTT+TGG | + | chr1_3:5699038-5699057 | Msa0099500:intron | 40.0% | |
| ! | TGATAGGAACATTTGGCTTC+AGG | - | chr1_3:5699164-5699183 | None:intergenic | 40.0% |
| TTATCAATGCAAATGGCACG+AGG | + | chr1_3:5699246-5699265 | Msa0099500:CDS | 40.0% | |
| AAAGAAGCCGATTGTGCTAA+AGG | + | chr1_3:5699335-5699354 | Msa0099500:CDS | 40.0% | |
| ACATGCACTTAATGCATGCA+TGG | - | chr1_3:5697710-5697729 | None:intergenic | 40.0% | |
| ! | GAAAGAGTGATGACGTTCAA+TGG | - | chr1_3:5697753-5697772 | None:intergenic | 40.0% |
| ACGTCATCACTCTTTCTGTT+TGG | + | chr1_3:5697757-5697776 | Msa0099500:intron | 40.0% | |
| ATAATCATGCTAGCTAGCTG+TGG | + | chr1_3:5697842-5697861 | Msa0099500:intron | 40.0% | |
| TGTGATGATCCAACATAGTG+TGG | + | chr1_3:5698034-5698053 | Msa0099500:intron | 40.0% | |
| ! | GACATATTTGGAATGTGCTC+GGG | + | chr1_3:5698146-5698165 | Msa0099500:intron | 40.0% |
| TGTTCCGGATGGTTGTATTT+GGG | + | chr1_3:5698646-5698665 | Msa0099500:CDS | 40.0% | |
| GGATGGTTGTATTTGGGAAA+TGG | + | chr1_3:5698652-5698671 | Msa0099500:CDS | 40.0% | |
| AGTATCCTAGTCCTAGGAAA+AGG | + | chr1_3:5698876-5698895 | Msa0099500:CDS | 40.0% | |
| ! | TTAACCTTGGACCTTTTCCT+AGG | - | chr1_3:5698890-5698909 | None:intergenic | 40.0% |
| !!! | GCTCTCACTTGTTTTAACCT+TGG | - | chr1_3:5698903-5698922 | None:intergenic | 40.0% |
| TTAAAACAAGTGAGAGCCGT+GGG | + | chr1_3:5698906-5698925 | Msa0099500:CDS | 40.0% | |
| GAACGGTGAGGATTATACTT+TGG | + | chr1_3:5699038-5699057 | Msa0099500:intron | 40.0% | |
| ! | TGATAGGAACATTTGGCTTC+AGG | - | chr1_3:5699164-5699183 | None:intergenic | 40.0% |
| TTATCAATGCAAATGGCACG+AGG | + | chr1_3:5699246-5699265 | Msa0099500:CDS | 40.0% | |
| AAAGAAGCCGATTGTGCTAA+AGG | + | chr1_3:5699335-5699354 | Msa0099500:CDS | 40.0% | |
| ATGAATGGGTGAGGGAAGTA+TGG | - | chr1_3:5697585-5697604 | None:intergenic | 45.0% | |
| AAGGAGAAGCCACACTATGT+TGG | - | chr1_3:5698046-5698065 | None:intergenic | 45.0% | |
| GCTACAATTACTGTTCCGGA+TGG | + | chr1_3:5698635-5698654 | Msa0099500:CDS | 45.0% | |
| CTGTTCCGGATGGTTGTATT+TGG | + | chr1_3:5698645-5698664 | Msa0099500:CDS | 45.0% | |
| ! | TTGGACCTTTTCCTAGGACT+AGG | - | chr1_3:5698884-5698903 | None:intergenic | 45.0% |
| TAGTCCTAGGAAAAGGTCCA+AGG | + | chr1_3:5698883-5698902 | Msa0099500:CDS | 45.0% | |
| GTTAAAACAAGTGAGAGCCG+TGG | + | chr1_3:5698905-5698924 | Msa0099500:CDS | 45.0% | |
| ATGAATGGGTGAGGGAAGTA+TGG | - | chr1_3:5697585-5697604 | None:intergenic | 45.0% | |
| AAGGAGAAGCCACACTATGT+TGG | - | chr1_3:5698046-5698065 | None:intergenic | 45.0% | |
| GCTACAATTACTGTTCCGGA+TGG | + | chr1_3:5698635-5698654 | Msa0099500:CDS | 45.0% | |
| CTGTTCCGGATGGTTGTATT+TGG | + | chr1_3:5698645-5698664 | Msa0099500:CDS | 45.0% | |
| ! | TTGGACCTTTTCCTAGGACT+AGG | - | chr1_3:5698884-5698903 | None:intergenic | 45.0% |
| TAGTCCTAGGAAAAGGTCCA+AGG | + | chr1_3:5698883-5698902 | Msa0099500:CDS | 45.0% | |
| GTTAAAACAAGTGAGAGCCG+TGG | + | chr1_3:5698905-5698924 | Msa0099500:CDS | 45.0% | |
| TGAGTGGCATGAATGGGTGA+GGG | - | chr1_3:5697593-5697612 | None:intergenic | 50.0% | |
| TTGAGTGGCATGAATGGGTG+AGG | - | chr1_3:5697594-5697613 | None:intergenic | 50.0% | |
| ATGCTAGCTAGCTGTGGTTC+TGG | + | chr1_3:5697848-5697867 | Msa0099500:intron | 50.0% | |
| AAGTGAGAGCCGTGGGAAAA+AGG | + | chr1_3:5698913-5698932 | Msa0099500:CDS | 50.0% | |
| CTAAGGCAAATCGAACGGTG+AGG | + | chr1_3:5699026-5699045 | Msa0099500:intron | 50.0% | |
| ATCTCCACGCGACAGATTGT+TGG | - | chr1_3:5699292-5699311 | None:intergenic | 50.0% | |
| TGAGTGGCATGAATGGGTGA+GGG | - | chr1_3:5697593-5697612 | None:intergenic | 50.0% | |
| TTGAGTGGCATGAATGGGTG+AGG | - | chr1_3:5697594-5697613 | None:intergenic | 50.0% | |
| ATGCTAGCTAGCTGTGGTTC+TGG | + | chr1_3:5697848-5697867 | Msa0099500:intron | 50.0% | |
| AAGTGAGAGCCGTGGGAAAA+AGG | + | chr1_3:5698913-5698932 | Msa0099500:CDS | 50.0% | |
| CTAAGGCAAATCGAACGGTG+AGG | + | chr1_3:5699026-5699045 | Msa0099500:intron | 50.0% | |
| ATCTCCACGCGACAGATTGT+TGG | - | chr1_3:5699292-5699311 | None:intergenic | 50.0% | |
| ATGACCGGACAGGTCTTCTC+CGG | - | chr1_3:5697526-5697545 | None:intergenic | 55.0% | |
| GAGAAGACCTGTCCGGTCAT+TGG | + | chr1_3:5697526-5697545 | Msa0099500:CDS | 55.0% | |
| ATGACCGGACAGGTCTTCTC+CGG | - | chr1_3:5697526-5697545 | None:intergenic | 55.0% | |
| GAGAAGACCTGTCCGGTCAT+TGG | + | chr1_3:5697526-5697545 | Msa0099500:CDS | 55.0% | |
| AGGGCCAACAATCTGTCGCG+TGG | + | chr1_3:5699285-5699304 | Msa0099500:CDS | 60.0% | |
| AGGGCCAACAATCTGTCGCG+TGG | + | chr1_3:5699285-5699304 | Msa0099500:CDS | 60.0% | |
| CTCGCCGGAGAAGACCTGTC+CGG | + | chr1_3:5697519-5697538 | Msa0099500:CDS | 65.0% | |
| ACCTGTCCGGTCATTGGCGC+CGG | + | chr1_3:5697532-5697551 | Msa0099500:CDS | 65.0% | |
| CGTTCTCCGGCGCCAATGAC+CGG | - | chr1_3:5697541-5697560 | None:intergenic | 65.0% | |
| CTCGCCGGAGAAGACCTGTC+CGG | + | chr1_3:5697519-5697538 | Msa0099500:CDS | 65.0% | |
| ACCTGTCCGGTCATTGGCGC+CGG | + | chr1_3:5697532-5697551 | Msa0099500:CDS | 65.0% | |
| CGTTCTCCGGCGCCAATGAC+CGG | - | chr1_3:5697541-5697560 | None:intergenic | 65.0% | |
| CGGACAGGTCTTCTCCGGCG+AGG | - | chr1_3:5697521-5697540 | None:intergenic | 70.0% | |
| TCCGGCGCCAATGACCGGAC+AGG | - | chr1_3:5697536-5697555 | None:intergenic | 70.0% | |
| CGGACAGGTCTTCTCCGGCG+AGG | - | chr1_3:5697521-5697540 | None:intergenic | 70.0% | |
| TCCGGCGCCAATGACCGGAC+AGG | - | chr1_3:5697536-5697555 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 5697512 | 5699392 | 5697512 | ID=Msa0099500;Name=Msa0099500 |
| chr1_3 | mRNA | 5697512 | 5699392 | 5697512 | ID=Msa0099500-mRNA-1;Parent=Msa0099500;Name=Msa0099500-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|1|1|3|0|274 |
| chr1_3 | exon | 5697512 | 5697616 | 5697512 | ID=Msa0099500-mRNA-1:exon:2195;Parent=Msa0099500-mRNA-1 |
| chr1_3 | exon | 5698584 | 5699042 | 5698584 | ID=Msa0099500-mRNA-1:exon:2196;Parent=Msa0099500-mRNA-1 |
| chr1_3 | exon | 5699132 | 5699392 | 5699132 | ID=Msa0099500-mRNA-1:exon:2197;Parent=Msa0099500-mRNA-1 |
| chr1_3 | CDS | 5697512 | 5697616 | 5697512 | ID=Msa0099500-mRNA-1:cds;Parent=Msa0099500-mRNA-1 |
| chr1_3 | CDS | 5698584 | 5699042 | 5698584 | ID=Msa0099500-mRNA-1:cds;Parent=Msa0099500-mRNA-1 |
| chr1_3 | CDS | 5699132 | 5699392 | 5699132 | ID=Msa0099500-mRNA-1:cds;Parent=Msa0099500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
