AlfalfaGEDB | Msa0099630

M. sativa cultivar zhongmu-4 / Msa0099630

KEGG: -
GO: -
PFAM: PF03101.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0099630	PNX89196.1	73.196	194	52	0	73	266	7	200	4.32e-94	293

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0099630	sp\|Q9LKR4\|FRS10_ARATH	33.951	162	103	3	101	259	61	221	5.02e-17	86.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0099630	A0A2K3MEL2	73.196	194	52	0	73	266	7	200	2.06e-94	293

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TFs/TRs:

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Gene ID	Type	Classification
Msa0099630	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0099630	MtrunA17_Chr1g0203051	34.553	246	155	2	13	258	3	242	1.19e-46	169
Msa0099630	MtrunA17_Chr1g0171741	40.741	162	94	2	64	225	103	262	7.04e-33	124
Msa0099630	MtrunA17_Chr2g0287651	34.715	193	125	1	94	285	74	266	8.11e-33	130
Msa0099630	MtrunA17_Chr8g0389811	35.821	134	86	0	73	206	62	195	1.48e-27	108
Msa0099630	MtrunA17_Chr2g0331371	37.576	165	99	2	45	206	3	166	4.29e-27	107
Msa0099630	MtrunA17_Chr6g0473421	43.956	91	51	0	80	170	40	130	8.04e-22	91.3
Msa0099630	MtrunA17_Chr1g0172931	39.655	116	66	2	63	177	46	158	8.74e-20	85.5
Msa0099630	MtrunA17_Chr5g0448761	34.568	162	100	3	100	257	65	224	4.25e-16	80.5
Msa0099630	MtrunA17_Chr1g0198761	31.220	205	112	8	93	272	42	242	6.42e-16	79.7
Msa0099630	MtrunA17_Chr2g0290391	33.333	171	108	4	101	267	57	225	1.17e-15	79.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0099630	AT5G28530.5	33.529	170	109	3	101	267	61	229	4.64e-18	86.7
Msa0099630	AT5G28530.4	33.529	170	109	3	101	267	61	229	4.93e-18	86.7
Msa0099630	AT5G28530.1	33.951	162	103	3	101	259	61	221	5.11e-18	86.7
Msa0099630	AT5G28530.3	33.951	162	103	3	101	259	61	221	5.62e-18	86.7
Msa0099630	AT5G28530.2	33.951	162	103	3	101	259	61	221	5.62e-18	86.7
Msa0099630	AT4G38180.1	35.294	170	100	5	95	257	70	236	6.04e-15	77.4
Msa0099630	AT1G10240.2	30.636	173	108	6	101	265	54	222	6.01e-14	73.9
Msa0099630	AT1G10240.1	30.636	173	108	6	101	265	54	222	6.01e-14	73.9

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Find 89 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAACAATAAAACAGGT+AGG	0.641669	1_3:-5828061	None:intergenic
AAACTCACAAGTATCTTTGC+CGG	0.460720	1_3:+5827879	Msa0099630:CDS
AACAAACGATCTCCACCCTC+TGG	0.540136	1_3:-5827645	None:intergenic
AAGGATTTGTATAACCAAGT+TGG	0.513872	1_3:+5828498	Msa0099630:CDS
AAGGGTTTAGAGAGGATAGG+GGG	0.612598	1_3:+5828175	Msa0099630:CDS
AAGTCCCACCCAACATATCA+TGG	0.526054	1_3:-5828326	None:intergenic
AATTCGTCTTCACCATTGGC+AGG	0.467391	1_3:-5830097	None:intergenic
ACCAACCTTGTGAAAACCAC+CGG	0.551580	1_3:-5828466	None:intergenic
ACCACCGGATGCATTGGCCA+TGG	0.631660	1_3:-5828451	None:intergenic
ACCATGGCCAATGCATCCGG+TGG	0.644970	1_3:+5828450	Msa0099630:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTTTGAAAACCAGATTCAA+TGG	-	chr1_3:5827713-5827732	None:intergenic	30.0%
AGCAATTGTGTTTAACGATA+TGG	+	chr1_3:5827960-5827979	Msa0099630:CDS	30.0%
GCAATTGTGTTTAACGATAT+GGG	+	chr1_3:5827961-5827980	Msa0099630:CDS	30.0%
AAACCAACAATAAAACAGGT+AGG	-	chr1_3:5828064-5828083	None:intergenic	30.0%
TAGCAAACCAACAATAAAAC+AGG	-	chr1_3:5828068-5828087	None:intergenic	30.0%
TGATCATAACCATGATATGT+TGG	+	chr1_3:5828317-5828336	Msa0099630:CDS	30.0%
GATCATAACCATGATATGTT+GGG	+	chr1_3:5828318-5828337	Msa0099630:CDS	30.0%
ATAAGACCATACCAAATGTA+CGG	+	chr1_3:5828426-5828445	Msa0099630:CDS	30.0%
AAGGATTTGTATAACCAAGT+TGG	+	chr1_3:5828498-5828517	Msa0099630:CDS	30.0%
ACACCAGAGAAAATAACAAA+CGG	-	chr1_3:5828744-5828763	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	5827633	5830301	5827633	ID=Msa0099630;Name=Msa0099630
chr1_3	mRNA	5827633	5830301	5827633	ID=Msa0099630-mRNA-1;Parent=Msa0099630;Name=Msa0099630-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0\|0\|0\|0.25\|1\|1\|4\|0\|404
chr1_3	exon	5827633	5827695	5827633	ID=Msa0099630-mRNA-1:exon:2245;Parent=Msa0099630-mRNA-1
chr1_3	exon	5827805	5828519	5827805	ID=Msa0099630-mRNA-1:exon:2246;Parent=Msa0099630-mRNA-1
chr1_3	exon	5829750	5830165	5829750	ID=Msa0099630-mRNA-1:exon:2247;Parent=Msa0099630-mRNA-1
chr1_3	exon	5830281	5830301	5830281	ID=Msa0099630-mRNA-1:exon:2248;Parent=Msa0099630-mRNA-1
chr1_3	CDS	5827633	5827695	5827633	ID=Msa0099630-mRNA-1:cds;Parent=Msa0099630-mRNA-1
chr1_3	CDS	5827805	5828519	5827805	ID=Msa0099630-mRNA-1:cds;Parent=Msa0099630-mRNA-1
chr1_3	CDS	5829750	5830165	5829750	ID=Msa0099630-mRNA-1:cds;Parent=Msa0099630-mRNA-1
chr1_3	CDS	5830281	5830301	5830281	ID=Msa0099630-mRNA-1:cds;Parent=Msa0099630-mRNA-1

Gene Sequence

>Msa0099630

ATGGATTGTAGACCAGAGGGTGGAGATCGTTTGTTTTTGGATGCAGGACTGGGTATCACAAATGACACGACAGAAGAAAGTGATGGTAGCAACACGTCAAGCGGTGGTTGTAGTACTACAGTCGAAACTGAAAACTCAAACTCACAAGTATCTTTGCCGGTCGAATCTGAAGAAGAGGCAAATTCTGTTGAAGATGGATTAGATGGTTCAGGTGGTCAAGCAATTGTGTTTAACGATATGGGTGATATAATGAAGTTTGACATGGAAAAGTTTTGCATTGATGATGTTGGAAGGTATGATTTTGCTAGTTTGGATGTTGCCTACCTGTTTTATTGTTGGTTTGCTAGAATGTCCGGGTTCTCTGTACGTAAGGGTCAAATGATTAGGGATCGGGAAGGTGTTGTTTTGCAGCAAACGTTTTTATGTTCATGTGAAGGGTTTAGAGAGGATAGGGGGTTAACAAGGGAGAACCGAAGGCGTGAGCCACGCAACGAAACAAGATGTGGATGTAAGGCAAAATTTAGAGTTCATGTAGACATTGTTACAAAGCGTTGGTATGTCACTGTGTTTGAAATTGATCATAACCATGATATGTTGGGTGGGACTTTGTGTGGATTACTACCTGCATACAGAAAGATGAGTGAAGGTGATATTGAGGAAATTGAACGCAGTAGAAAAGCAGGGATAAGACCATACCAAATGTACGGTACCATGGCCAATGCATCCGGTGGTTTTCACAAGGTTGGTTTTGTTAAAAAGGATTTGTATAACCAAGTTGCAAGATATTCTGGTATAGTCCAGTTGTGCAAAGAAGTTGCTGGATTAGTTTATGAAGATCTTGATGAGTATAATGATTTTGTTGAAAGCTTGAGTGGGGAAATCCATAGATTAAAATTAAAGAAAAATGTTGAATCTTCTGGATTATCTCCAGTTTTGCCTACGGTAAATGAGGAAGACGAACTCCTTGATCCTGAGGTTGTTAGAACGAAAGGATGTGGTTCAATTGCTACGGGTACTCCAGGCAGGCGCAAACGCACGCAAACATGTAGTAATTGTGGTGTAATAGGCCACAATAGACGATGTTGTCCACAGCTAAATTTAAATCTTCCTGGTCATACACTTAATCCTGCCAATGGTGAAGACGAATTTGAAGAAGACGATGACAACTACTACTACTATAGTCAGACTCAGACGGATATTGGCACACAAGGTTGA

Protein sequence

>Msa0099630

MDCRPEGGDRLFLDAGLGITNDTTEESDGSNTSSGGCSTTVETENSNSQVSLPVESEEEANSVEDGLDGSGGQAIVFNDMGDIMKFDMEKFCIDDVGRYDFASLDVAYLFYCWFARMSGFSVRKGQMIRDREGVVLQQTFLCSCEGFREDRGLTRENRRREPRNETRCGCKAKFRVHVDIVTKRWYVTVFEIDHNHDMLGGTLCGLLPAYRKMSEGDIEEIERSRKAGIRPYQMYGTMANASGGFHKVGFVKKDLYNQVARYSGIVQLCKEVAGLVYEDLDEYNDFVESLSGEIHRLKLKKNVESSGLSPVLPTVNEEDELLDPEVVRTKGCGSIATGTPGRRKRTQTCSNCGVIGHNRRCCPQLNLNLPGHTLNPANGEDEFEEDDDNYYYYSQTQTDIGTQG*