AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0099630


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0099630 MtrunA17_Chr1g0203051 34.553 246 155 2 13 258 3 242 1.19e-46 169
Msa0099630 MtrunA17_Chr1g0171741 40.741 162 94 2 64 225 103 262 7.04e-33 124
Msa0099630 MtrunA17_Chr2g0287651 34.715 193 125 1 94 285 74 266 8.11e-33 130
Msa0099630 MtrunA17_Chr8g0389811 35.821 134 86 0 73 206 62 195 1.48e-27 108
Msa0099630 MtrunA17_Chr2g0331371 37.576 165 99 2 45 206 3 166 4.29e-27 107
Msa0099630 MtrunA17_Chr6g0473421 43.956 91 51 0 80 170 40 130 8.04e-22 91.3
Msa0099630 MtrunA17_Chr1g0172931 39.655 116 66 2 63 177 46 158 8.74e-20 85.5
Msa0099630 MtrunA17_Chr5g0448761 34.568 162 100 3 100 257 65 224 4.25e-16 80.5
Msa0099630 MtrunA17_Chr1g0198761 31.220 205 112 8 93 272 42 242 6.42e-16 79.7
Msa0099630 MtrunA17_Chr2g0290391 33.333 171 108 4 101 267 57 225 1.17e-15 79.0
Msa0099630 MtrunA17_Chr5g0431001 30.208 192 112 6 101 272 67 256 5.45e-15 76.6
Msa0099630 MtrunA17_Chr2g0276841 33.566 143 88 4 101 238 76 216 3.36e-14 74.3
Msa0099630 MtrunA17_Chr2g0277171 56.250 80 34 1 1 80 1 79 1.97e-12 62.8
Msa0099630 MtrunA17_Chr1g0202341 28.395 162 111 3 100 260 56 213 4.02e-12 68.2
Msa0099630 MtrunA17_Chr2g0294841 32.022 178 102 7 101 265 51 222 4.96e-12 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0099630 AT5G28530.5 33.529 170 109 3 101 267 61 229 4.64e-18 86.7
Msa0099630 AT5G28530.4 33.529 170 109 3 101 267 61 229 4.93e-18 86.7
Msa0099630 AT5G28530.1 33.951 162 103 3 101 259 61 221 5.11e-18 86.7
Msa0099630 AT5G28530.3 33.951 162 103 3 101 259 61 221 5.62e-18 86.7
Msa0099630 AT5G28530.2 33.951 162 103 3 101 259 61 221 5.62e-18 86.7
Msa0099630 AT4G38180.1 35.294 170 100 5 95 257 70 236 6.04e-15 77.4
Msa0099630 AT1G10240.2 30.636 173 108 6 101 265 54 222 6.01e-14 73.9
Msa0099630 AT1G10240.1 30.636 173 108 6 101 265 54 222 6.01e-14 73.9

Find 89 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCAATTGTGTTTAACGATA+TGG 0.229082 1_3:+5827960 Msa0099630:CDS
CAATCTGCAGCAAGATATTC+TGG 0.314174 1_3:+5829740 Msa0099630:intron
TCATTTACCGTAGGCAAAAC+TGG 0.325615 1_3:-5829899 None:intergenic
TGTAGTAATTGTGGTGTAAT+AGG 0.325728 1_3:+5830016 Msa0099630:CDS
CAGCTAAATTTAAATCTTCC+TGG 0.331544 1_3:+5830061 Msa0099630:CDS
CAGCAACTTCTTTGCACAAC+TGG 0.354915 1_3:-5829769 None:intergenic
TACGTAAGGGTCAAATGATT+AGG 0.360442 1_3:+5828106 Msa0099630:CDS
TGTTGGTTTGCTAGAATGTC+CGG 0.368843 1_3:+5828075 Msa0099630:CDS
GAAGATGGATTAGATGGTTC+AGG 0.385947 1_3:+5827931 Msa0099630:CDS
GCAATTGTGTTTAACGATAT+GGG 0.394378 1_3:+5827961 Msa0099630:CDS
TGGCCATGGTACCGTACATT+TGG 0.419221 1_3:-5828437 None:intergenic
TCTGTTGAAGATGGATTAGA+TGG 0.422289 1_3:+5827925 Msa0099630:CDS
CGTTGCGTGGCTCACGCCTT+CGG 0.424339 1_3:-5828212 None:intergenic
TGAAGGGTTTAGAGAGGATA+GGG 0.425140 1_3:+5828173 Msa0099630:CDS
ACGTAAGGGTCAAATGATTA+GGG 0.438100 1_3:+5828107 Msa0099630:CDS
GTCCGGGTTCTCTGTACGTA+AGG 0.442552 1_3:+5828092 Msa0099630:CDS
TTCAAATTCGTCTTCACCAT+TGG 0.445525 1_3:-5830101 None:intergenic
TAGCAAACCAACAATAAAAC+AGG 0.448653 1_3:-5828065 None:intergenic
TGCGTGCGTTTGCGCCTGCC+TGG 0.457056 1_3:-5829989 None:intergenic
AAACTCACAAGTATCTTTGC+CGG 0.460720 1_3:+5827879 Msa0099630:CDS
GAGGCAAATTCTGTTGAAGA+TGG 0.463355 1_3:+5827916 Msa0099630:CDS
AATTCGTCTTCACCATTGGC+AGG 0.467391 1_3:-5830097 None:intergenic
CCACATCTTGTTTCGTTGCG+TGG 0.468890 1_3:-5828225 None:intergenic
GGGTCAAATGATTAGGGATC+GGG 0.473894 1_3:+5828113 Msa0099630:CDS
CGAAACAAGATGTGGATGTA+AGG 0.474068 1_3:+5828233 Msa0099630:CDS
GGTACCATGGCCAATGCATC+CGG 0.478832 1_3:+5828447 Msa0099630:CDS
TCACTCATCTTTCTGTATGC+AGG 0.482247 1_3:-5828363 None:intergenic
GTTTACGTTGCTTACCAACT+TGG 0.485379 1_3:-5828512 None:intergenic
CCTTTCGTTCTAACAACCTC+AGG 0.487809 1_3:-5829941 None:intergenic
ATGTTGGGTGGGACTTTGTG+TGG 0.491891 1_3:+5828333 Msa0099630:CDS
CAGTTGTGCAAAGAAGTTGC+TGG 0.503687 1_3:+5829770 Msa0099630:CDS
TTCTAACAACCTCAGGATCA+AGG 0.512314 1_3:-5829934 None:intergenic
AAGGATTTGTATAACCAAGT+TGG 0.513872 1_3:+5828498 Msa0099630:CDS
GCCTCTTCTTCAGATTCGAC+CGG 0.514599 1_3:-5827898 None:intergenic
ATTGAACGCAGTAGAAAAGC+AGG 0.515481 1_3:+5828402 Msa0099630:CDS
GTGAAAACCACCGGATGCAT+TGG 0.516512 1_3:-5828457 None:intergenic
TGATCATAACCATGATATGT+TGG 0.520526 1_3:+5828317 Msa0099630:CDS
TTGCTACGGGTACTCCAGGC+AGG 0.522386 1_3:+5829975 Msa0099630:CDS
AAGTCCCACCCAACATATCA+TGG 0.526054 1_3:-5828326 None:intergenic
CCTGAGGTTGTTAGAACGAA+AGG 0.527309 1_3:+5829941 Msa0099630:CDS
AGGATGTGGTTCAATTGCTA+CGG 0.528366 1_3:+5829961 Msa0099630:CDS
GATGAGTGAAGGTGATATTG+AGG 0.533926 1_3:+5828377 Msa0099630:CDS
TCAATTGCTACGGGTACTCC+AGG 0.535102 1_3:+5829971 Msa0099630:CDS
AACAAACGATCTCCACCCTC+TGG 0.540136 1_3:-5827645 None:intergenic
ATGGTACCGTACATTTGGTA+TGG 0.543018 1_3:-5828432 None:intergenic
ACCAACCTTGTGAAAACCAC+CGG 0.551580 1_3:-5828466 None:intergenic
GATCATAACCATGATATGTT+GGG 0.552642 1_3:+5828318 Msa0099630:CDS
AGGGTCAAATGATTAGGGAT+CGG 0.556672 1_3:+5828112 Msa0099630:CDS
TAGACATTGTTACAAAGCGT+TGG 0.557208 1_3:+5828274 Msa0099630:CDS
GTTGTTAGAACGAAAGGATG+TGG 0.560820 1_3:+5829947 Msa0099630:CDS
GTTGGTTTGCTAGAATGTCC+GGG 0.563741 1_3:+5828076 Msa0099630:CDS
GGATGTGGTTCAATTGCTAC+GGG 0.579078 1_3:+5829962 Msa0099630:CDS
GCCGGTCGAATCTGAAGAAG+AGG 0.579413 1_3:+5827897 Msa0099630:CDS
GGAAGATTTAAATTTAGCTG+TGG 0.581102 1_3:-5830058 None:intergenic
TTGTAGGATATTGGCACACA+AGG 0.581110 1_3:+5830275 Msa0099630:intron
GTGGACAACATCGTCTATTG+TGG 0.581267 1_3:-5830039 None:intergenic
TCGTCTTCCTCATTTACCGT+AGG 0.582575 1_3:-5829908 None:intergenic
GTGAAGGGTTTAGAGAGGAT+AGG 0.583533 1_3:+5828172 Msa0099630:CDS
ACCCTTACGTACAGAGAACC+CGG 0.584162 1_3:-5828094 None:intergenic
TTCATGTGAAGGGTTTAGAG+AGG 0.585894 1_3:+5828167 Msa0099630:CDS
AGTTATGGATTGTAGACCAG+AGG 0.597894 1_3:+5827629 None:intergenic
GAAGGGTTTAGAGAGGATAG+GGG 0.605796 1_3:+5828174 Msa0099630:CDS
GGTTAACAAGGGAGAACCGA+AGG 0.608301 1_3:+5828196 Msa0099630:CDS
AAGGGTTTAGAGAGGATAGG+GGG 0.612598 1_3:+5828175 Msa0099630:CDS
ACGCAAACATGTAGTAATTG+TGG 0.613207 1_3:+5830007 Msa0099630:CDS
ATAAGACCATACCAAATGTA+CGG 0.618674 1_3:+5828426 Msa0099630:CDS
TCCGGGTTCTCTGTACGTAA+GGG 0.618976 1_3:+5828093 Msa0099630:CDS
CATAACCATGATATGTTGGG+TGG 0.621498 1_3:+5828321 Msa0099630:CDS
ATAACCATGATATGTTGGGT+GGG 0.626489 1_3:+5828322 Msa0099630:CDS
AGACGAACTCCTTGATCCTG+AGG 0.627835 1_3:+5829925 Msa0099630:CDS
ACCACCGGATGCATTGGCCA+TGG 0.631660 1_3:-5828451 None:intergenic
GATGGTAGCAACACGTCAAG+CGG 0.631845 1_3:+5827823 Msa0099630:CDS
CATACACTTAATCCTGCCAA+TGG 0.635369 1_3:+5830085 Msa0099630:CDS
TTTGCATTGATGATGTTGGA+AGG 0.635495 1_3:+5828013 Msa0099630:CDS
ATACCAAATGTACGGTACCA+TGG 0.637363 1_3:+5828434 Msa0099630:CDS
TGATATAATGAAGTTTGACA+TGG 0.637415 1_3:+5827984 Msa0099630:CDS
GTTATGGATTGTAGACCAGA+GGG 0.639635 1_3:+5827630 None:intergenic
GCATACAGAAAGATGAGTGA+AGG 0.639842 1_3:+5828366 Msa0099630:CDS
AAACCAACAATAAAACAGGT+AGG 0.641669 1_3:-5828061 None:intergenic
ACCATGGCCAATGCATCCGG+TGG 0.644970 1_3:+5828450 Msa0099630:CDS
CTACTATAGTCAGACTCAGA+CGG 0.647730 1_3:+5830144 Msa0099630:CDS
CCACGCAACGAAACAAGATG+TGG 0.660406 1_3:+5828225 Msa0099630:CDS
GGTAGCAACACGTCAAGCGG+TGG 0.661636 1_3:+5827826 Msa0099630:CDS
TTGAACGCAGTAGAAAAGCA+GGG 0.669009 1_3:+5828403 Msa0099630:CDS
GATGGATTAGATGGTTCAGG+TGG 0.676772 1_3:+5827934 Msa0099630:CDS
GCAGGATTAAGTGTATGACC+AGG 0.677736 1_3:-5830079 None:intergenic
ATGGATTGTAGACCAGAGGG+TGG 0.690600 1_3:+5827633 Msa0099630:CDS
GACACGACAGAAGAAAGTGA+TGG 0.695407 1_3:+5827805 Msa0099630:CDS
CAAATGATTAGGGATCGGGA+AGG 0.764049 1_3:+5828117 Msa0099630:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTTTATTTTTTAAAA+TGG + chr1_3:5827752-5827771 Msa0099630:intron 0.0%
!!! TTTTCTTTAATTTTAATCTA+TGG - chr1_3:5829856-5829875 None:intergenic 10.0%
!! TTTAAAAAAAATGATGAAAA+AGG - chr1_3:5830178-5830197 None:intergenic 10.0%
!! TTATATTAAAAAATGCATGT+TGG + chr1_3:5829016-5829035 Msa0099630:intron 15.0%
!! TATATTAAAAAATGCATGTT+GGG + chr1_3:5829017-5829036 Msa0099630:intron 15.0%
!! TAAGTGTTATCAAAATTTAA+AGG - chr1_3:5830227-5830246 None:intergenic 15.0%
!!! AATTTTTAAGTGCTATGAAA+GGG + chr1_3:5828847-5828866 Msa0099630:intron 20.0%
!! TGTATGAGAAAAAAAATATG+TGG + chr1_3:5829126-5829145 Msa0099630:intron 20.0%
!! GTATGAGAAAAAAAATATGT+GGG + chr1_3:5829127-5829146 Msa0099630:intron 20.0%
!!! TTAAAATGGATTAACCTTAC+TGG + chr1_3:5827766-5827785 Msa0099630:intron 25.0%
! TGATATAATGAAGTTTGACA+TGG + chr1_3:5827984-5828003 Msa0099630:CDS 25.0%
!!! CAATTTTTAAGTGCTATGAA+AGG + chr1_3:5828846-5828865 Msa0099630:intron 25.0%
!!! TCTAACTTATTTTCGTTTCA+GGG + chr1_3:5829286-5829305 Msa0099630:intron 25.0%
!! ACATAAAATGTTCTTGTTTG+AGG + chr1_3:5829558-5829577 Msa0099630:intron 25.0%
! AAGAAAAATGTTGAATCTTC+TGG + chr1_3:5829869-5829888 Msa0099630:CDS 25.0%
!! ACTATCATGTCTTTTATTGT+AGG + chr1_3:5830259-5830278 Msa0099630:intron 25.0%
!! TGTCTTTTATTGTAGGATAT+TGG + chr1_3:5830266-5830285 Msa0099630:intron 25.0%
AGTTTGAAAACCAGATTCAA+TGG - chr1_3:5827713-5827732 None:intergenic 30.0%
!!! TCTGGTTTTCAAACTTGATA+CGG + chr1_3:5827718-5827737 Msa0099630:intron 30.0%
AGCAATTGTGTTTAACGATA+TGG + chr1_3:5827960-5827979 Msa0099630:CDS 30.0%
GCAATTGTGTTTAACGATAT+GGG + chr1_3:5827961-5827980 Msa0099630:CDS 30.0%
!!! AAGTTTTGCATTGATGATGT+TGG + chr1_3:5828009-5828028 Msa0099630:CDS 30.0%
! AAGGTATGATTTTGCTAGTT+TGG + chr1_3:5828032-5828051 Msa0099630:CDS 30.0%
AAACCAACAATAAAACAGGT+AGG - chr1_3:5828064-5828083 None:intergenic 30.0%
TAGCAAACCAACAATAAAAC+AGG - chr1_3:5828068-5828087 None:intergenic 30.0%
! ACGTTTTTATGTTCATGTGA+AGG + chr1_3:5828156-5828175 Msa0099630:CDS 30.0%
! CGTTTTTATGTTCATGTGAA+GGG + chr1_3:5828157-5828176 Msa0099630:CDS 30.0%
TGATCATAACCATGATATGT+TGG + chr1_3:5828317-5828336 Msa0099630:CDS 30.0%
GATCATAACCATGATATGTT+GGG + chr1_3:5828318-5828337 Msa0099630:CDS 30.0%
ATAAGACCATACCAAATGTA+CGG + chr1_3:5828426-5828445 Msa0099630:CDS 30.0%
!!! CAAGGTTGGTTTTGTTAAAA+AGG + chr1_3:5828479-5828498 Msa0099630:CDS 30.0%
AAGGATTTGTATAACCAAGT+TGG + chr1_3:5828498-5828517 Msa0099630:CDS 30.0%
ACACCAGAGAAAATAACAAA+CGG - chr1_3:5828744-5828763 None:intergenic 30.0%
TTTAGGGAAAACTCTCTTAA+TGG - chr1_3:5828922-5828941 None:intergenic 30.0%
!! TAAGTGCTTTTGAAGAGTTA+TGG + chr1_3:5829051-5829070 Msa0099630:intron 30.0%
!! AAGTGCTTTTGAAGAGTTAT+GGG + chr1_3:5829052-5829071 Msa0099630:intron 30.0%
TTGGTTTAGAAGAAAACAAC+TGG + chr1_3:5829093-5829112 Msa0099630:intron 30.0%
!! GTCTAACTTATTTTCGTTTC+AGG + chr1_3:5829285-5829304 Msa0099630:intron 30.0%
TCTGATTTCCAATCTAACTA+TGG + chr1_3:5829317-5829336 Msa0099630:intron 30.0%
!! AGGAGATCTTTTTCTTGTTT+AGG + chr1_3:5829402-5829421 Msa0099630:intron 30.0%
!! GATCTTTTTCTTGTTTAGGT+CGG + chr1_3:5829406-5829425 Msa0099630:intron 30.0%
!! TAAAGAAAGCATTGCTTATC+AGG + chr1_3:5829432-5829451 Msa0099630:intron 30.0%
GATAAACGATTGTCAAGAAA+TGG + chr1_3:5829454-5829473 Msa0099630:intron 30.0%
! CAAGAACATTTTATGTCAAC+CGG - chr1_3:5829554-5829573 None:intergenic 30.0%
! AAAATGTTCTTGTTTGAGGA+TGG + chr1_3:5829562-5829581 Msa0099630:intron 30.0%
ATTGCCATGTGATCATATAA+TGG + chr1_3:5829595-5829614 Msa0099630:intron 30.0%
! ATTTTGTTGAAAGCTTGAGT+GGG + chr1_3:5829825-5829844 Msa0099630:CDS 30.0%
TGTAGTAATTGTGGTGTAAT+AGG + chr1_3:5830016-5830035 Msa0099630:CDS 30.0%
GGAAGATTTAAATTTAGCTG+TGG - chr1_3:5830061-5830080 None:intergenic 30.0%
CAGCTAAATTTAAATCTTCC+TGG + chr1_3:5830061-5830080 Msa0099630:CDS 30.0%
AAACTCACAAGTATCTTTGC+CGG + chr1_3:5827879-5827898 Msa0099630:CDS 35.0%
!! TCTGTTGAAGATGGATTAGA+TGG + chr1_3:5827925-5827944 Msa0099630:CDS 35.0%
!! TTTGCATTGATGATGTTGGA+AGG + chr1_3:5828013-5828032 Msa0099630:CDS 35.0%
!! TTGCCTACCTGTTTTATTGT+TGG + chr1_3:5828058-5828077 Msa0099630:CDS 35.0%
TACGTAAGGGTCAAATGATT+AGG + chr1_3:5828106-5828125 Msa0099630:CDS 35.0%
ACGTAAGGGTCAAATGATTA+GGG + chr1_3:5828107-5828126 Msa0099630:CDS 35.0%
TAGACATTGTTACAAAGCGT+TGG + chr1_3:5828274-5828293 Msa0099630:CDS 35.0%
ATAACCATGATATGTTGGGT+GGG + chr1_3:5828322-5828341 Msa0099630:CDS 35.0%
!!! CAACTTTTTTCTGATGCAAG+TGG + chr1_3:5828534-5828553 Msa0099630:intron 35.0%
ACACCATTGGTAAGGATAAA+AGG + chr1_3:5828613-5828632 Msa0099630:intron 35.0%
! AAGCCTTTTATCCTTACCAA+TGG - chr1_3:5828619-5828638 None:intergenic 35.0%
! AAAGGCTTGAGAGATTGTTT+TGG + chr1_3:5828631-5828650 Msa0099630:intron 35.0%
!!! AGAGATTGTTTTGGAGTGAT+GGG + chr1_3:5828640-5828659 Msa0099630:intron 35.0%
CGAATGAACTACGAGATATT+CGG + chr1_3:5828669-5828688 Msa0099630:intron 35.0%
!! GACAGTTGTACTTGTTTTTC+CGG - chr1_3:5828722-5828741 None:intergenic 35.0%
!!! TGTCCGTTTGTTATTTTCTC+TGG + chr1_3:5828738-5828757 Msa0099630:intron 35.0%
ATAACCAGACGATTGTGTTT+GGG + chr1_3:5828772-5828791 Msa0099630:intron 35.0%
AACATCTGCAATCCCAATAT+TGG - chr1_3:5828991-5829010 None:intergenic 35.0%
!! CTTCAAAAGCACTTACATCA+AGG - chr1_3:5829046-5829065 None:intergenic 35.0%
AATGCACAAAATTTCCCATG+TGG - chr1_3:5829223-5829242 None:intergenic 35.0%
ACTTTGTTCAACAATTCCAC+AGG + chr1_3:5829261-5829280 Msa0099630:intron 35.0%
GAAAATAAGTTAGACACCTG+TGG - chr1_3:5829280-5829299 None:intergenic 35.0%
ATTGTCAAGAAATGGCTACA+GGG + chr1_3:5829462-5829481 Msa0099630:intron 35.0%
ACTGCCATTATATGATCACA+TGG - chr1_3:5829602-5829621 None:intergenic 35.0%
CTAGGCAAAACCAAACAATT+GGG - chr1_3:5829653-5829672 None:intergenic 35.0%
TCTAGGCAAAACCAAACAAT+TGG - chr1_3:5829654-5829673 None:intergenic 35.0%
!!! ATTGTTTGGTTTTGCCTAGA+TGG + chr1_3:5829654-5829673 Msa0099630:intron 35.0%
TTTGCAAATTTCGACCATCT+AGG - chr1_3:5829671-5829690 None:intergenic 35.0%
!! ATTCGTGAGAAGTATTCAAG+TGG + chr1_3:5829698-5829717 Msa0099630:intron 35.0%
ATTCAAGTGGTTCTTTGTAC+TGG + chr1_3:5829711-5829730 Msa0099630:intron 35.0%
TTCAAGTGGTTCTTTGTACT+GGG + chr1_3:5829712-5829731 Msa0099630:intron 35.0%
! GATTTTGTTGAAAGCTTGAG+TGG + chr1_3:5829824-5829843 Msa0099630:CDS 35.0%
! TTTTGTTGAAAGCTTGAGTG+GGG + chr1_3:5829826-5829845 Msa0099630:CDS 35.0%
! ATTATCTCCAGTTTTGCCTA+CGG + chr1_3:5829892-5829911 Msa0099630:CDS 35.0%
ACGCAAACATGTAGTAATTG+TGG + chr1_3:5830007-5830026 Msa0099630:CDS 35.0%
TTCAAATTCGTCTTCACCAT+TGG - chr1_3:5830104-5830123 None:intergenic 35.0%
!!! GATCGTTTGTTTTTGGATGC+AGG + chr1_3:5827657-5827676 Msa0099630:CDS 40.0%
!!! TTTGTTTTTGGATGCAGGAC+TGG + chr1_3:5827662-5827681 Msa0099630:CDS 40.0%
!!! TTGTTTTTGGATGCAGGACT+GGG + chr1_3:5827663-5827682 Msa0099630:CDS 40.0%
GCATCTACAACCATTGAATC+TGG + chr1_3:5827700-5827719 Msa0099630:intron 40.0%
GTAACATTATGCGACCAGTA+AGG - chr1_3:5827783-5827802 None:intergenic 40.0%
TACTGGTCGCATAATGTTAC+AGG + chr1_3:5827783-5827802 Msa0099630:intron 40.0%
GAGGCAAATTCTGTTGAAGA+TGG + chr1_3:5827916-5827935 Msa0099630:CDS 40.0%
!! GAAGATGGATTAGATGGTTC+AGG + chr1_3:5827931-5827950 Msa0099630:CDS 40.0%
!! TGTTGGTTTGCTAGAATGTC+CGG + chr1_3:5828075-5828094 Msa0099630:CDS 40.0%
AGGGTCAAATGATTAGGGAT+CGG + chr1_3:5828112-5828131 Msa0099630:CDS 40.0%
TTCATGTGAAGGGTTTAGAG+AGG + chr1_3:5828167-5828186 Msa0099630:CDS 40.0%
TGAAGGGTTTAGAGAGGATA+GGG + chr1_3:5828173-5828192 Msa0099630:CDS 40.0%
CGAAACAAGATGTGGATGTA+AGG + chr1_3:5828233-5828252 Msa0099630:CDS 40.0%
CATAACCATGATATGTTGGG+TGG + chr1_3:5828321-5828340 Msa0099630:CDS 40.0%
TCACTCATCTTTCTGTATGC+AGG - chr1_3:5828366-5828385 None:intergenic 40.0%
GCATACAGAAAGATGAGTGA+AGG + chr1_3:5828366-5828385 Msa0099630:CDS 40.0%
GATGAGTGAAGGTGATATTG+AGG + chr1_3:5828377-5828396 Msa0099630:CDS 40.0%
ATTGAACGCAGTAGAAAAGC+AGG + chr1_3:5828402-5828421 Msa0099630:CDS 40.0%
TTGAACGCAGTAGAAAAGCA+GGG + chr1_3:5828403-5828422 Msa0099630:CDS 40.0%
ATGGTACCGTACATTTGGTA+TGG - chr1_3:5828435-5828454 None:intergenic 40.0%
ATACCAAATGTACGGTACCA+TGG + chr1_3:5828434-5828453 Msa0099630:CDS 40.0%
GTTTACGTTGCTTACCAACT+TGG - chr1_3:5828515-5828534 None:intergenic 40.0%
! TTTTTCTGATGCAAGTGGTG+CGG + chr1_3:5828539-5828558 Msa0099630:intron 40.0%
TGTGTGTCACAAACATAAGC+GGG - chr1_3:5828596-5828615 None:intergenic 40.0%
GTGTGTGTCACAAACATAAG+CGG - chr1_3:5828597-5828616 None:intergenic 40.0%
ATGTTTGTGACACACACCAT+TGG + chr1_3:5828600-5828619 Msa0099630:intron 40.0%
!!! GAGAGATTGTTTTGGAGTGA+TGG + chr1_3:5828639-5828658 Msa0099630:intron 40.0%
!!! GAGATTGTTTTGGAGTGATG+GGG + chr1_3:5828641-5828660 Msa0099630:intron 40.0%
!! TTGCTTTTGATGCAACCTAC+CGG + chr1_3:5828700-5828719 Msa0099630:intron 40.0%
!! GTTGTACTTGTTTTTCCGGT+AGG - chr1_3:5828718-5828737 None:intergenic 40.0%
ACACAATCGTCTGGTTATGA+TGG - chr1_3:5828770-5828789 None:intergenic 40.0%
CATAACCAGACGATTGTGTT+TGG + chr1_3:5828771-5828790 Msa0099630:intron 40.0%
! AGGCATTGTAACACGAGAAA+CGG + chr1_3:5828797-5828816 Msa0099630:intron 40.0%
AGTGTCTCCATCGGTAATTA+CGG - chr1_3:5828886-5828905 None:intergenic 40.0%
! AGAAACGCATCGACCAATAT+TGG + chr1_3:5828975-5828994 Msa0099630:intron 40.0%
! GAAACGCATCGACCAATATT+GGG + chr1_3:5828976-5828995 Msa0099630:intron 40.0%
! TGAAGAGTTATGGGCTGAAA+TGG + chr1_3:5829061-5829080 Msa0099630:intron 40.0%
GCTGAAATGGTTCAGAAGTT+TGG + chr1_3:5829074-5829093 Msa0099630:intron 40.0%
ATAAGGGGAAGTTTCTTTGC+TGG + chr1_3:5829161-5829180 Msa0099630:intron 40.0%
! CAGGTTGACCATAGTTAGAT+TGG - chr1_3:5829328-5829347 None:intergenic 40.0%
TTTCTCGATAGAACGTAGAC+TGG - chr1_3:5829360-5829379 None:intergenic 40.0%
AGCTGCAAAGTTGTTTACGA+AGG + chr1_3:5829382-5829401 Msa0099630:intron 40.0%
GATTGTCAAGAAATGGCTAC+AGG + chr1_3:5829461-5829480 Msa0099630:intron 40.0%
!! GTTTCAAAGTACCGTCTTGA+TGG + chr1_3:5829497-5829516 Msa0099630:intron 40.0%
! TGTTTCCTTTTGCGAAGAAC+CGG + chr1_3:5829532-5829551 Msa0099630:intron 40.0%
CAATCTGCAGCAAGATATTC+TGG + chr1_3:5829740-5829759 Msa0099630:intron 40.0%
TCATTTACCGTAGGCAAAAC+TGG - chr1_3:5829902-5829921 None:intergenic 40.0%
! AGTTTTGCCTACGGTAAATG+AGG + chr1_3:5829901-5829920 Msa0099630:CDS 40.0%
TTCTAACAACCTCAGGATCA+AGG - chr1_3:5829937-5829956 None:intergenic 40.0%
GTTGTTAGAACGAAAGGATG+TGG + chr1_3:5829947-5829966 Msa0099630:CDS 40.0%
AGGATGTGGTTCAATTGCTA+CGG + chr1_3:5829961-5829980 Msa0099630:CDS 40.0%
CATACACTTAATCCTGCCAA+TGG + chr1_3:5830085-5830104 Msa0099630:CDS 40.0%
CTACTATAGTCAGACTCAGA+CGG + chr1_3:5830144-5830163 Msa0099630:CDS 40.0%
TTGTAGGATATTGGCACACA+AGG + chr1_3:5830275-5830294 Msa0099630:intron 40.0%
!! GGGTGGAGATCGTTTGTTTT+TGG + chr1_3:5827650-5827669 Msa0099630:CDS 45.0%
GACACGACAGAAGAAAGTGA+TGG + chr1_3:5827805-5827824 Msa0099630:CDS 45.0%
!! GATGGATTAGATGGTTCAGG+TGG + chr1_3:5827934-5827953 Msa0099630:CDS 45.0%
!! GTTGGTTTGCTAGAATGTCC+GGG + chr1_3:5828076-5828095 Msa0099630:CDS 45.0%
GGGTCAAATGATTAGGGATC+GGG + chr1_3:5828113-5828132 Msa0099630:CDS 45.0%
CAAATGATTAGGGATCGGGA+AGG + chr1_3:5828117-5828136 Msa0099630:CDS 45.0%
GTGAAGGGTTTAGAGAGGAT+AGG + chr1_3:5828172-5828191 Msa0099630:CDS 45.0%
GAAGGGTTTAGAGAGGATAG+GGG + chr1_3:5828174-5828193 Msa0099630:CDS 45.0%
AAGGGTTTAGAGAGGATAGG+GGG + chr1_3:5828175-5828194 Msa0099630:CDS 45.0%
AGAGGATAGGGGGTTAACAA+GGG + chr1_3:5828185-5828204 Msa0099630:CDS 45.0%
AAGTCCCACCCAACATATCA+TGG - chr1_3:5828329-5828348 None:intergenic 45.0%
ACCAACCTTGTGAAAACCAC+CGG - chr1_3:5828469-5828488 None:intergenic 45.0%
TGTGACACACACCATTGGTA+AGG + chr1_3:5828605-5828624 Msa0099630:intron 45.0%
AAACGGAAGAGACTTACGTC+TGG + chr1_3:5828814-5828833 Msa0099630:intron 45.0%
AGAGACTTACGTCTGGTTGT+TGG + chr1_3:5828821-5828840 Msa0099630:intron 45.0%
CCATCGGTAATTACGGATAC+CGG - chr1_3:5828879-5828898 None:intergenic 45.0%
TCTCATTGCAGTGTCTCCAT+CGG - chr1_3:5828895-5828914 None:intergenic 45.0%
!! ATAGTCGGTGATGGGCTTTA+GGG - chr1_3:5828938-5828957 None:intergenic 45.0%
CAAAATTTCCCATGTGGCTG+TGG - chr1_3:5829217-5829236 None:intergenic 45.0%
!! CGTAGACTGGTTTGTAACAC+AGG - chr1_3:5829347-5829366 None:intergenic 45.0%
TGTTTGAGGATGGAGTCACT+CGG + chr1_3:5829572-5829591 Msa0099630:intron 45.0%
CGATGAGCTTCCCAATTGTT+TGG + chr1_3:5829640-5829659 Msa0099630:intron 45.0%
CAGCAACTTCTTTGCACAAC+TGG - chr1_3:5829772-5829791 None:intergenic 45.0%
CAGTTGTGCAAAGAAGTTGC+TGG + chr1_3:5829770-5829789 Msa0099630:CDS 45.0%
TCGTCTTCCTCATTTACCGT+AGG - chr1_3:5829911-5829930 None:intergenic 45.0%
CCTTTCGTTCTAACAACCTC+AGG - chr1_3:5829944-5829963 None:intergenic 45.0%
CCTGAGGTTGTTAGAACGAA+AGG + chr1_3:5829941-5829960 Msa0099630:CDS 45.0%
GGATGTGGTTCAATTGCTAC+GGG + chr1_3:5829962-5829981 Msa0099630:CDS 45.0%
GTGGACAACATCGTCTATTG+TGG - chr1_3:5830042-5830061 None:intergenic 45.0%
GCAGGATTAAGTGTATGACC+AGG - chr1_3:5830082-5830101 None:intergenic 45.0%
AATTCGTCTTCACCATTGGC+AGG - chr1_3:5830100-5830119 None:intergenic 45.0%
! ATGGATTGTAGACCAGAGGG+TGG + chr1_3:5827633-5827652 Msa0099630:CDS 50.0%
AACAAACGATCTCCACCCTC+TGG - chr1_3:5827648-5827667 None:intergenic 50.0%
GATGGTAGCAACACGTCAAG+CGG + chr1_3:5827823-5827842 Msa0099630:CDS 50.0%
GCCTCTTCTTCAGATTCGAC+CGG - chr1_3:5827901-5827920 None:intergenic 50.0%
TCCGGGTTCTCTGTACGTAA+GGG + chr1_3:5828093-5828112 Msa0099630:CDS 50.0%
ACCCTTACGTACAGAGAACC+CGG - chr1_3:5828097-5828116 None:intergenic 50.0%
GAGAGGATAGGGGGTTAACA+AGG + chr1_3:5828184-5828203 Msa0099630:CDS 50.0%
GGTTAACAAGGGAGAACCGA+AGG + chr1_3:5828196-5828215 Msa0099630:CDS 50.0%
! CCACATCTTGTTTCGTTGCG+TGG - chr1_3:5828228-5828247 None:intergenic 50.0%
CCACGCAACGAAACAAGATG+TGG + chr1_3:5828225-5828244 Msa0099630:CDS 50.0%
ATGTTGGGTGGGACTTTGTG+TGG + chr1_3:5828333-5828352 Msa0099630:CDS 50.0%
TGGCCATGGTACCGTACATT+TGG - chr1_3:5828440-5828459 None:intergenic 50.0%
GTGAAAACCACCGGATGCAT+TGG - chr1_3:5828460-5828479 None:intergenic 50.0%
! TGCATCCGGTGGTTTTCACA+AGG + chr1_3:5828461-5828480 Msa0099630:CDS 50.0%
! TCCGGTGGTTTTCACAAGGT+TGG + chr1_3:5828465-5828484 Msa0099630:CDS 50.0%
CTGTCCCAAACACAATCGTC+TGG - chr1_3:5828779-5828798 None:intergenic 50.0%
! CAGACGATTGTGTTTGGGAC+AGG + chr1_3:5828777-5828796 Msa0099630:intron 50.0%
TGCTATGAAAGGGAAGCAGC+CGG + chr1_3:5828857-5828876 Msa0099630:intron 50.0%
CCGGTATCCGTAATTACCGA+TGG + chr1_3:5828876-5828895 Msa0099630:intron 50.0%
!! CATAGTCGGTGATGGGCTTT+AGG - chr1_3:5828939-5828958 None:intergenic 50.0%
TGGTCGATGCGTTTCTCAAC+AGG - chr1_3:5828971-5828990 None:intergenic 50.0%
ACTTCCCCTTATGTGAGCAG+TGG - chr1_3:5829153-5829172 None:intergenic 50.0%
! ACCGTCTTGATGGCAGTGAA+TGG + chr1_3:5829507-5829526 Msa0099630:intron 50.0%
GCCATTCACTGCCATCAAGA+CGG - chr1_3:5829511-5829530 None:intergenic 50.0%
! GTCAACCGGTTCTTCGCAAA+AGG - chr1_3:5829540-5829559 None:intergenic 50.0%
AGACGAACTCCTTGATCCTG+AGG + chr1_3:5829925-5829944 Msa0099630:CDS 50.0%
TCAATTGCTACGGGTACTCC+AGG + chr1_3:5829971-5829990 Msa0099630:CDS 50.0%
GCCGGTCGAATCTGAAGAAG+AGG + chr1_3:5827897-5827916 Msa0099630:CDS 55.0%
GTCCGGGTTCTCTGTACGTA+AGG + chr1_3:5828092-5828111 Msa0099630:CDS 55.0%
GGTACCATGGCCAATGCATC+CGG + chr1_3:5828447-5828466 Msa0099630:CDS 55.0%
CCACGCACATAGTCGGTGAT+GGG - chr1_3:5828946-5828965 None:intergenic 55.0%
! ACAGGTGCCACGCACATAGT+CGG - chr1_3:5828953-5828972 None:intergenic 55.0%
TGTGGGCCACTGCTCACATA+AGG + chr1_3:5829144-5829163 Msa0099630:intron 55.0%
GTGGGCCACTGCTCACATAA+GGG + chr1_3:5829145-5829164 Msa0099630:intron 55.0%
TGGGCCACTGCTCACATAAG+GGG + chr1_3:5829146-5829165 Msa0099630:intron 55.0%
TCGAACTACGTCTCGTTGCG+AGG + chr1_3:5829187-5829206 Msa0099630:intron 55.0%
GGTAGCAACACGTCAAGCGG+TGG + chr1_3:5827826-5827845 Msa0099630:CDS 60.0%
ACCATGGCCAATGCATCCGG+TGG + chr1_3:5828450-5828469 Msa0099630:CDS 60.0%
! ACCACCGGATGCATTGGCCA+TGG - chr1_3:5828454-5828473 None:intergenic 60.0%
! CCCATCACCGACTATGTGCG+TGG + chr1_3:5828943-5828962 Msa0099630:intron 60.0%
GCCACGCACATAGTCGGTGA+TGG - chr1_3:5828947-5828966 None:intergenic 60.0%
TTGCTACGGGTACTCCAGGC+AGG + chr1_3:5829975-5829994 Msa0099630:CDS 60.0%
CGTTGCGTGGCTCACGCCTT+CGG - chr1_3:5828215-5828234 None:intergenic 65.0%
! GAGGCGCTCCACAGCCACAT+GGG + chr1_3:5829206-5829225 Msa0099630:intron 65.0%
! CGAGGCGCTCCACAGCCACA+TGG + chr1_3:5829205-5829224 Msa0099630:intron 70.0%
TGCGTGCGTTTGCGCCTGCC+TGG - chr1_3:5829992-5830011 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 5827633 5830301 5827633 ID=Msa0099630;Name=Msa0099630
chr1_3 mRNA 5827633 5830301 5827633 ID=Msa0099630-mRNA-1;Parent=Msa0099630;Name=Msa0099630-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0|0|0|0.25|1|1|4|0|404
chr1_3 exon 5827633 5827695 5827633 ID=Msa0099630-mRNA-1:exon:2245;Parent=Msa0099630-mRNA-1
chr1_3 exon 5827805 5828519 5827805 ID=Msa0099630-mRNA-1:exon:2246;Parent=Msa0099630-mRNA-1
chr1_3 exon 5829750 5830165 5829750 ID=Msa0099630-mRNA-1:exon:2247;Parent=Msa0099630-mRNA-1
chr1_3 exon 5830281 5830301 5830281 ID=Msa0099630-mRNA-1:exon:2248;Parent=Msa0099630-mRNA-1
chr1_3 CDS 5827633 5827695 5827633 ID=Msa0099630-mRNA-1:cds;Parent=Msa0099630-mRNA-1
chr1_3 CDS 5827805 5828519 5827805 ID=Msa0099630-mRNA-1:cds;Parent=Msa0099630-mRNA-1
chr1_3 CDS 5829750 5830165 5829750 ID=Msa0099630-mRNA-1:cds;Parent=Msa0099630-mRNA-1
chr1_3 CDS 5830281 5830301 5830281 ID=Msa0099630-mRNA-1:cds;Parent=Msa0099630-mRNA-1
Gene Sequence

>Msa0099630

ATGGATTGTAGACCAGAGGGTGGAGATCGTTTGTTTTTGGATGCAGGACTGGGTATCACAAATGACACGACAGAAGAAAGTGATGGTAGCAACACGTCAAGCGGTGGTTGTAGTACTACAGTCGAAACTGAAAACTCAAACTCACAAGTATCTTTGCCGGTCGAATCTGAAGAAGAGGCAAATTCTGTTGAAGATGGATTAGATGGTTCAGGTGGTCAAGCAATTGTGTTTAACGATATGGGTGATATAATGAAGTTTGACATGGAAAAGTTTTGCATTGATGATGTTGGAAGGTATGATTTTGCTAGTTTGGATGTTGCCTACCTGTTTTATTGTTGGTTTGCTAGAATGTCCGGGTTCTCTGTACGTAAGGGTCAAATGATTAGGGATCGGGAAGGTGTTGTTTTGCAGCAAACGTTTTTATGTTCATGTGAAGGGTTTAGAGAGGATAGGGGGTTAACAAGGGAGAACCGAAGGCGTGAGCCACGCAACGAAACAAGATGTGGATGTAAGGCAAAATTTAGAGTTCATGTAGACATTGTTACAAAGCGTTGGTATGTCACTGTGTTTGAAATTGATCATAACCATGATATGTTGGGTGGGACTTTGTGTGGATTACTACCTGCATACAGAAAGATGAGTGAAGGTGATATTGAGGAAATTGAACGCAGTAGAAAAGCAGGGATAAGACCATACCAAATGTACGGTACCATGGCCAATGCATCCGGTGGTTTTCACAAGGTTGGTTTTGTTAAAAAGGATTTGTATAACCAAGTTGCAAGATATTCTGGTATAGTCCAGTTGTGCAAAGAAGTTGCTGGATTAGTTTATGAAGATCTTGATGAGTATAATGATTTTGTTGAAAGCTTGAGTGGGGAAATCCATAGATTAAAATTAAAGAAAAATGTTGAATCTTCTGGATTATCTCCAGTTTTGCCTACGGTAAATGAGGAAGACGAACTCCTTGATCCTGAGGTTGTTAGAACGAAAGGATGTGGTTCAATTGCTACGGGTACTCCAGGCAGGCGCAAACGCACGCAAACATGTAGTAATTGTGGTGTAATAGGCCACAATAGACGATGTTGTCCACAGCTAAATTTAAATCTTCCTGGTCATACACTTAATCCTGCCAATGGTGAAGACGAATTTGAAGAAGACGATGACAACTACTACTACTATAGTCAGACTCAGACGGATATTGGCACACAAGGTTGA

Protein sequence

>Msa0099630

MDCRPEGGDRLFLDAGLGITNDTTEESDGSNTSSGGCSTTVETENSNSQVSLPVESEEEANSVEDGLDGSGGQAIVFNDMGDIMKFDMEKFCIDDVGRYDFASLDVAYLFYCWFARMSGFSVRKGQMIRDREGVVLQQTFLCSCEGFREDRGLTRENRRREPRNETRCGCKAKFRVHVDIVTKRWYVTVFEIDHNHDMLGGTLCGLLPAYRKMSEGDIEEIERSRKAGIRPYQMYGTMANASGGFHKVGFVKKDLYNQVARYSGIVQLCKEVAGLVYEDLDEYNDFVESLSGEIHRLKLKKNVESSGLSPVLPTVNEEDELLDPEVVRTKGCGSIATGTPGRRKRTQTCSNCGVIGHNRRCCPQLNLNLPGHTLNPANGEDEFEEDDDNYYYYSQTQTDIGTQG*