Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0101000 | XP_039683421.1 | 96.561 | 727 | 24 | 1 | 1 | 727 | 1 | 726 | 0.0 | 1466 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0101000 | sp|Q9SZL8|FRS5_ARATH | 34.126 | 589 | 374 | 9 | 2 | 586 | 62 | 640 | 3.41e-111 | 360 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0101000 | A0A2K3LNV6 | 81.392 | 661 | 98 | 5 | 148 | 800 | 1 | 644 | 0.0 | 1088 |
Gene ID | Type | Classification |
---|---|---|
Msa0101000 | TF | FAR1 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0101000 | MtrunA17_Chr8g0363841 | 68.991 | 674 | 204 | 2 | 1 | 674 | 1 | 669 | 0.0 | 982 |
Msa0101000 | MtrunA17_Chr2g0324011 | 35.172 | 580 | 345 | 11 | 13 | 581 | 9 | 568 | 2.52e-109 | 346 |
Msa0101000 | MtrunA17_Chr1g0202341 | 33.916 | 572 | 364 | 9 | 14 | 581 | 48 | 609 | 8.81e-109 | 348 |
Msa0101000 | MtrunA17_Chr5g0448761 | 34.197 | 579 | 368 | 9 | 20 | 591 | 63 | 635 | 1.10e-108 | 350 |
Msa0101000 | MtrunA17_Chr3g0082121 | 34.046 | 561 | 345 | 9 | 25 | 581 | 51 | 590 | 2.32e-101 | 328 |
Msa0101000 | MtrunA17_Chr6g0458391 | 31.802 | 566 | 356 | 9 | 19 | 581 | 227 | 765 | 3.06e-95 | 314 |
Msa0101000 | MtrunA17_Chr2g0287651 | 30.769 | 559 | 372 | 7 | 27 | 581 | 85 | 632 | 4.85e-92 | 308 |
Msa0101000 | MtrunA17_Chr1g0203721 | 30.282 | 568 | 382 | 8 | 19 | 581 | 65 | 623 | 2.18e-90 | 303 |
Msa0101000 | MtrunA17_Chr5g0440451 | 30.085 | 585 | 366 | 12 | 18 | 582 | 44 | 605 | 1.29e-89 | 303 |
Msa0101000 | MtrunA17_Chr2g0296781 | 32.028 | 562 | 361 | 8 | 25 | 578 | 5 | 553 | 6.32e-87 | 291 |
Msa0101000 | MtrunA17_Chr1g0207551 | 30.648 | 571 | 369 | 10 | 20 | 581 | 37 | 589 | 4.65e-86 | 290 |
Msa0101000 | MtrunA17_Chr5g0441581 | 29.893 | 562 | 367 | 8 | 27 | 581 | 42 | 583 | 1.44e-83 | 281 |
Msa0101000 | MtrunA17_Chr1g0198761 | 29.429 | 700 | 448 | 17 | 17 | 703 | 47 | 713 | 6.80e-82 | 278 |
Msa0101000 | MtrunA17_Chr2g0287061 | 30.427 | 585 | 355 | 11 | 7 | 588 | 173 | 708 | 2.14e-81 | 277 |
Msa0101000 | MtrunA17_Chr2g0329031 | 29.055 | 561 | 371 | 9 | 25 | 580 | 22 | 560 | 7.56e-81 | 275 |
Msa0101000 | MtrunA17_Chr6g0477261 | 34.382 | 445 | 262 | 4 | 151 | 578 | 11 | 442 | 1.76e-80 | 271 |
Msa0101000 | MtrunA17_Chr5g0448511 | 34.146 | 410 | 267 | 3 | 193 | 601 | 10 | 417 | 3.40e-80 | 268 |
Msa0101000 | MtrunA17_Chr1g0203051 | 27.788 | 547 | 378 | 7 | 26 | 568 | 88 | 621 | 1.17e-75 | 258 |
Msa0101000 | MtrunA17_Chr3g0080351 | 28.447 | 573 | 371 | 10 | 20 | 581 | 79 | 623 | 1.29e-75 | 262 |
Msa0101000 | MtrunA17_Chr3g0118611 | 34.783 | 391 | 248 | 6 | 193 | 581 | 116 | 501 | 2.85e-75 | 260 |
Msa0101000 | MtrunA17_Chr2g0291581 | 28.477 | 604 | 395 | 8 | 1 | 587 | 45 | 628 | 2.35e-73 | 253 |
Msa0101000 | MtrunA17_Chr1g0196541 | 27.592 | 598 | 406 | 9 | 25 | 610 | 5 | 587 | 1.52e-71 | 249 |
Msa0101000 | MtrunA17_Chr2g0291591 | 29.211 | 469 | 322 | 4 | 27 | 495 | 74 | 532 | 2.60e-68 | 236 |
Msa0101000 | MtrunA17_Chr2g0294841 | 26.667 | 705 | 454 | 15 | 18 | 694 | 46 | 715 | 7.22e-67 | 236 |
Msa0101000 | MtrunA17_Chr1g0164591 | 36.223 | 323 | 196 | 3 | 105 | 426 | 8 | 321 | 1.13e-66 | 224 |
Msa0101000 | MtrunA17_Chr2g0276841 | 27.074 | 639 | 406 | 14 | 18 | 636 | 71 | 669 | 2.46e-66 | 234 |
Msa0101000 | MtrunA17_Chr2g0290391 | 29.043 | 606 | 380 | 16 | 7 | 586 | 37 | 618 | 3.07e-61 | 219 |
Msa0101000 | MtrunA17_Chr5g0431001 | 29.698 | 431 | 276 | 9 | 18 | 431 | 62 | 482 | 7.08e-50 | 183 |
Msa0101000 | MtrunA17_Chr7g0258861 | 32.313 | 294 | 189 | 4 | 19 | 308 | 12 | 299 | 1.08e-44 | 163 |
Msa0101000 | MtrunA17_Chr1g0149131 | 39.286 | 112 | 67 | 1 | 300 | 410 | 1 | 112 | 4.11e-21 | 89.7 |
Msa0101000 | MtrunA17_Chr2g0308841 | 22.709 | 251 | 189 | 3 | 359 | 608 | 6 | 252 | 4.74e-14 | 73.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0101000 | AT4G38180.1 | 34.126 | 589 | 374 | 9 | 2 | 586 | 62 | 640 | 3.47e-112 | 360 |
Msa0101000 | AT4G15090.1 | 28.010 | 789 | 488 | 19 | 27 | 796 | 61 | 788 | 1.41e-91 | 306 |
Msa0101000 | AT4G15090.5 | 28.010 | 789 | 488 | 19 | 27 | 796 | 61 | 788 | 1.41e-91 | 306 |
Msa0101000 | AT4G15090.3 | 28.010 | 789 | 488 | 19 | 27 | 796 | 61 | 788 | 1.41e-91 | 306 |
Msa0101000 | AT4G15090.2 | 28.010 | 789 | 488 | 19 | 27 | 796 | 61 | 788 | 1.41e-91 | 306 |
Msa0101000 | AT4G15090.4 | 28.010 | 789 | 488 | 19 | 27 | 796 | 61 | 788 | 1.41e-91 | 306 |
Msa0101000 | AT2G27110.2 | 29.725 | 582 | 371 | 9 | 19 | 597 | 51 | 597 | 1.37e-89 | 301 |
Msa0101000 | AT2G27110.1 | 29.725 | 582 | 371 | 9 | 19 | 597 | 51 | 597 | 1.37e-89 | 301 |
Msa0101000 | AT2G27110.3 | 34.140 | 413 | 265 | 5 | 188 | 597 | 44 | 452 | 3.47e-81 | 275 |
Msa0101000 | AT3G06250.2 | 29.542 | 589 | 354 | 12 | 2 | 583 | 177 | 711 | 2.18e-79 | 271 |
Msa0101000 | AT3G06250.1 | 29.542 | 589 | 354 | 12 | 2 | 583 | 177 | 711 | 2.18e-79 | 271 |
Msa0101000 | AT3G06250.3 | 29.542 | 589 | 354 | 12 | 2 | 583 | 177 | 711 | 2.18e-79 | 271 |
Msa0101000 | AT1G76320.3 | 27.803 | 651 | 433 | 13 | 25 | 673 | 5 | 620 | 5.08e-78 | 265 |
Msa0101000 | AT1G76320.1 | 29.464 | 560 | 374 | 10 | 25 | 582 | 5 | 545 | 1.58e-77 | 266 |
Msa0101000 | AT1G76320.4 | 29.464 | 560 | 374 | 10 | 25 | 582 | 5 | 545 | 1.58e-77 | 266 |
Msa0101000 | AT1G76320.2 | 29.464 | 560 | 374 | 10 | 25 | 582 | 5 | 545 | 1.65e-77 | 266 |
Msa0101000 | AT3G22170.2 | 29.361 | 579 | 359 | 11 | 20 | 581 | 73 | 618 | 8.64e-77 | 266 |
Msa0101000 | AT3G22170.1 | 29.361 | 579 | 359 | 11 | 20 | 581 | 73 | 618 | 8.64e-77 | 266 |
Msa0101000 | AT4G19990.3 | 28.995 | 607 | 365 | 12 | 1 | 584 | 1 | 564 | 4.35e-75 | 259 |
Msa0101000 | AT4G19990.4 | 28.995 | 607 | 365 | 12 | 1 | 584 | 1 | 564 | 4.35e-75 | 259 |
Msa0101000 | AT4G19990.5 | 28.995 | 607 | 365 | 12 | 1 | 584 | 1 | 564 | 5.84e-75 | 259 |
Msa0101000 | AT4G19990.6 | 28.995 | 607 | 365 | 12 | 1 | 584 | 1 | 564 | 1.03e-74 | 259 |
Msa0101000 | AT4G19990.2 | 28.995 | 607 | 365 | 12 | 1 | 584 | 1 | 564 | 1.03e-74 | 259 |
Msa0101000 | AT4G19990.7 | 29.022 | 603 | 362 | 12 | 5 | 584 | 19 | 578 | 2.72e-74 | 258 |
Msa0101000 | AT5G18960.2 | 28.843 | 579 | 356 | 12 | 5 | 580 | 202 | 727 | 1.80e-72 | 253 |
Msa0101000 | AT5G18960.1 | 28.843 | 579 | 356 | 12 | 5 | 580 | 202 | 727 | 1.80e-72 | 253 |
Msa0101000 | AT4G19990.1 | 30.077 | 522 | 314 | 10 | 70 | 584 | 30 | 507 | 7.50e-71 | 246 |
Msa0101000 | AT1G52520.1 | 27.826 | 575 | 389 | 7 | 10 | 578 | 81 | 635 | 1.10e-67 | 238 |
Msa0101000 | AT4G38170.1 | 30.390 | 385 | 260 | 5 | 199 | 581 | 21 | 399 | 9.25e-66 | 229 |
Msa0101000 | AT1G80010.1 | 26.461 | 616 | 408 | 12 | 20 | 604 | 98 | 699 | 1.16e-64 | 230 |
Msa0101000 | AT5G28530.3 | 27.257 | 587 | 383 | 11 | 18 | 583 | 56 | 619 | 1.80e-64 | 228 |
Msa0101000 | AT5G28530.2 | 27.257 | 587 | 383 | 11 | 18 | 583 | 56 | 619 | 1.80e-64 | 228 |
Msa0101000 | AT1G10240.2 | 29.138 | 580 | 368 | 15 | 18 | 578 | 49 | 604 | 5.43e-64 | 227 |
Msa0101000 | AT1G10240.1 | 29.138 | 580 | 368 | 15 | 18 | 578 | 49 | 604 | 5.43e-64 | 227 |
Msa0101000 | AT5G28530.1 | 27.580 | 591 | 380 | 12 | 18 | 583 | 56 | 623 | 6.74e-64 | 227 |
Msa0101000 | AT2G32250.5 | 26.335 | 562 | 363 | 8 | 20 | 580 | 41 | 552 | 3.70e-61 | 221 |
Msa0101000 | AT2G32250.2 | 26.157 | 562 | 364 | 8 | 20 | 580 | 41 | 552 | 4.97e-61 | 221 |
Msa0101000 | AT2G32250.4 | 26.157 | 562 | 364 | 8 | 20 | 580 | 41 | 552 | 4.97e-61 | 221 |
Msa0101000 | AT2G32250.8 | 26.391 | 557 | 359 | 8 | 25 | 580 | 5 | 511 | 5.46e-61 | 220 |
Msa0101000 | AT2G32250.7 | 26.391 | 557 | 359 | 8 | 25 | 580 | 5 | 511 | 5.83e-61 | 220 |
Msa0101000 | AT2G32250.6 | 26.157 | 562 | 364 | 8 | 20 | 580 | 41 | 552 | 5.89e-61 | 221 |
Msa0101000 | AT2G32250.1 | 26.157 | 562 | 364 | 8 | 20 | 580 | 41 | 552 | 5.89e-61 | 221 |
Msa0101000 | AT2G32250.3 | 26.157 | 562 | 364 | 8 | 20 | 580 | 41 | 552 | 5.89e-61 | 221 |
Msa0101000 | AT5G28530.5 | 24.048 | 578 | 350 | 13 | 18 | 583 | 56 | 556 | 2.00e-38 | 152 |
Msa0101000 | AT5G28530.4 | 24.399 | 582 | 347 | 14 | 18 | 583 | 56 | 560 | 6.16e-38 | 151 |
Find 122 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAGAATGCACCTTCTCATTT+TGG | 0.108203 | 1_3:-7511264 | Msa0101000:CDS |
ACTAATGTTTGGAGTTATTT+AGG | 0.178667 | 1_3:-7511810 | Msa0101000:CDS |
GTTGAGTTTCTTTGTGTTCC+TGG | 0.218316 | 1_3:+7510395 | None:intergenic |
TCAACAAATCATGTGGAAAT+TGG | 0.221033 | 1_3:-7510377 | Msa0101000:CDS |
AGGGTTATCATTCCTCAAAT+TGG | 0.230210 | 1_3:-7509840 | Msa0101000:CDS |
TGTATAAAATTCGTCATAAA+TGG | 0.250035 | 1_3:-7511101 | Msa0101000:CDS |
ATCATGTGGAAATTGGTTTA+TGG | 0.254101 | 1_3:-7510370 | Msa0101000:CDS |
CATAAACGGTGACATGTATT+TGG | 0.254781 | 1_3:+7511303 | None:intergenic |
AAAAGTTTCATGGTTTGTTT+TGG | 0.257014 | 1_3:-7511224 | Msa0101000:CDS |
AACTCTGATCAAAAGTTTCA+TGG | 0.276945 | 1_3:-7511234 | Msa0101000:CDS |
CCATCTTGAAGCCATGTTCT+TGG | 0.280191 | 1_3:+7512177 | None:intergenic |
CACATGTAACTCATTGATTC+AGG | 0.282301 | 1_3:-7509767 | Msa0101000:intron |
AATGTTCCTTCTACTTCTTT+TGG | 0.283406 | 1_3:-7509962 | Msa0101000:CDS |
TCATAATAGCATTGCGATAA+AGG | 0.291348 | 1_3:+7510446 | None:intergenic |
ACTACCACATGTTTCTTATT+AGG | 0.296197 | 1_3:+7510709 | None:intergenic |
CACGTTTAACCAATGTGTTT+TGG | 0.307246 | 1_3:-7511608 | Msa0101000:CDS |
GGGTTATCATTCCTCAAATT+GGG | 0.312307 | 1_3:-7509839 | Msa0101000:CDS |
GCGAATTACTAAGTTGATAA+TGG | 0.317295 | 1_3:-7511949 | Msa0101000:CDS |
GAAAAGAGTAAATTAATTAA+AGG | 0.318587 | 1_3:-7511720 | Msa0101000:CDS |
AAAGTTGATTATGATTGTTT+TGG | 0.323388 | 1_3:-7511570 | Msa0101000:CDS |
CATTGGTTAAACGTGATTCT+TGG | 0.328206 | 1_3:+7511616 | None:intergenic |
AAACTTCTGTTTCTTTCAAT+TGG | 0.330619 | 1_3:-7511425 | Msa0101000:CDS |
ATTGTTCTTAAACCCTTGTT+TGG | 0.337062 | 1_3:+7512076 | None:intergenic |
CATGTCACCGTTTATGCTTA+TGG | 0.342415 | 1_3:-7511296 | Msa0101000:CDS |
ACTAAGATGTTACAAGGAAT+TGG | 0.345022 | 1_3:-7509790 | Msa0101000:CDS |
CTTATTAGCATTTGAAAAGA+TGG | 0.359804 | 1_3:-7510962 | Msa0101000:CDS |
TCACCTACGATTTCTCCTTC+TGG | 0.371892 | 1_3:+7512050 | None:intergenic |
GCAAGTGATTGATTAAAGAT+TGG | 0.373633 | 1_3:+7511688 | None:intergenic |
TTGTCGAAAGTTTGATTCAA+TGG | 0.378573 | 1_3:-7510653 | Msa0101000:CDS |
CCCATCCATGGAAGAACTAA+TGG | 0.382474 | 1_3:+7510021 | None:intergenic |
CAAGTGATTGATTAAAGATT+GGG | 0.384672 | 1_3:+7511689 | None:intergenic |
GTATGAAAGTTACTAATGTT+TGG | 0.386893 | 1_3:-7511821 | Msa0101000:CDS |
AGACTTTATGAGACCTCCTT+TGG | 0.388927 | 1_3:+7511857 | None:intergenic |
CAAGTAGTGCTTTCCAAGAT+AGG | 0.389222 | 1_3:-7509649 | Msa0101000:CDS |
TCCATTAGTTCTTCCATGGA+TGG | 0.401531 | 1_3:-7510022 | Msa0101000:CDS |
AGGAGGTCTCATAAAGTCTA+TGG | 0.403748 | 1_3:-7511853 | Msa0101000:CDS |
GAAGTACTTCTAAAGACATT+GGG | 0.403994 | 1_3:-7510777 | Msa0101000:CDS |
TAACATCTTAGTAAATGAAA+TGG | 0.407933 | 1_3:+7509801 | None:intergenic |
AAAACAATCATAATCAACTT+TGG | 0.409741 | 1_3:+7511572 | None:intergenic |
ACTTAGACTGGTTGCTGCTC+CGG | 0.416105 | 1_3:+7510990 | None:intergenic |
CATTTGCAAAATGTCATGTT+TGG | 0.424549 | 1_3:-7511468 | Msa0101000:CDS |
CATAACGTCTCCGATTGCTT+TGG | 0.425284 | 1_3:+7511326 | None:intergenic |
AATGAGTATCTTGCTGGAAC+TGG | 0.425528 | 1_3:-7510802 | Msa0101000:CDS |
CTATCTTGGAAAGCACTACT+TGG | 0.431144 | 1_3:+7509650 | None:intergenic |
CCATTAGTTCTTCCATGGAT+GGG | 0.443746 | 1_3:-7510021 | Msa0101000:CDS |
CTTATCAAAGGGCTGATTCA+AGG | 0.444079 | 1_3:-7512022 | Msa0101000:CDS |
TGTCGAAAGTTTGATTCAAT+GGG | 0.444829 | 1_3:-7510652 | Msa0101000:CDS |
TTGTTCCATTAGTTCTTCCA+TGG | 0.449933 | 1_3:-7510026 | Msa0101000:CDS |
CGATTTAATGTTAGCAAGGA+TGG | 0.456458 | 1_3:-7511978 | Msa0101000:CDS |
CTCACTGATATTTATGATGC+GGG | 0.456755 | 1_3:+7510879 | None:intergenic |
GATTCAAAAGAAGAGTTTGA+AGG | 0.459181 | 1_3:-7511183 | Msa0101000:CDS |
ATGTTATTGAGAACATTAGA+AGG | 0.459905 | 1_3:+7509998 | None:intergenic |
TATTTAGGAGAAGAGGTTGG+TGG | 0.461595 | 1_3:-7511795 | Msa0101000:CDS |
GGTGCACCAAAAGAAGTAGA+AGG | 0.473964 | 1_3:+7509956 | None:intergenic |
ACCAATACTTTCTGAGAAGA+TGG | 0.475220 | 1_3:-7510570 | Msa0101000:CDS |
ACCATCTTCTCAGAAAGTAT+TGG | 0.475482 | 1_3:+7510569 | None:intergenic |
ATATATGCCATAAGCATAAA+CGG | 0.475933 | 1_3:+7511289 | None:intergenic |
AGTGTGTTAAGTGCGATTGC+CGG | 0.478839 | 1_3:-7511009 | Msa0101000:CDS |
AGTATTTAAACCCCAATTTG+AGG | 0.480130 | 1_3:+7509828 | None:intergenic |
TGATGCGGGGAGGCATACTT+TGG | 0.480707 | 1_3:+7510893 | None:intergenic |
CTTCTCAGAAAGTATTGGTC+AGG | 0.486289 | 1_3:+7510574 | None:intergenic |
GATAAATTATAAACCTCTAA+AGG | 0.488005 | 1_3:+7509935 | None:intergenic |
GTTGGTGGATTTGATAAGCT+TGG | 0.492644 | 1_3:-7511780 | Msa0101000:CDS |
TGATGATTTACCCCAACAAA+AGG | 0.496863 | 1_3:+7511489 | None:intergenic |
AAGAAGAGTTTGAAGGCACT+TGG | 0.500098 | 1_3:-7511176 | Msa0101000:CDS |
CAAGAACATGGCTTCAAGAT+GGG | 0.500638 | 1_3:-7512176 | Msa0101000:CDS |
ACAAGCTTCAAAATCACAAA+TGG | 0.503549 | 1_3:-7511134 | Msa0101000:CDS |
CCAAGAACATGGCTTCAAGA+TGG | 0.507821 | 1_3:-7512177 | Msa0101000:CDS |
AGTTATTTAGGAGAAGAGGT+TGG | 0.508257 | 1_3:-7511798 | Msa0101000:CDS |
GGAGCCATGGCCAAAGCAAT+CGG | 0.517653 | 1_3:-7511336 | Msa0101000:CDS |
GTCTCCGATTGCTTTGGCCA+TGG | 0.517925 | 1_3:+7511332 | None:intergenic |
TTGCGAATTTACAACATCAA+AGG | 0.519182 | 1_3:-7510610 | Msa0101000:CDS |
AGGTCTAATACTCGCATGAA+AGG | 0.519315 | 1_3:-7510208 | Msa0101000:CDS |
AGCATTGCGATAAAGGATCA+TGG | 0.520528 | 1_3:+7510453 | None:intergenic |
GGAAGTACTTCTAAAGACAT+TGG | 0.522331 | 1_3:-7510778 | Msa0101000:CDS |
TCATTTACTAAGATGTTACA+AGG | 0.524417 | 1_3:-7509796 | Msa0101000:CDS |
TTGGAGTTATTTAGGAGAAG+AGG | 0.526196 | 1_3:-7511802 | Msa0101000:CDS |
GAGTATCTTGCTGGAACTGG+TGG | 0.526825 | 1_3:-7510799 | Msa0101000:CDS |
GATTATTATTGTTCCAAACA+AGG | 0.530481 | 1_3:-7512089 | Msa0101000:CDS |
ATGTTAGCAAGGATGGAGAA+TGG | 0.532233 | 1_3:-7511971 | Msa0101000:CDS |
TAGGTGAAGTTGCTTATCAA+AGG | 0.533461 | 1_3:-7512034 | Msa0101000:CDS |
AAGAGTAAATTAATTAAAGG+TGG | 0.536645 | 1_3:-7511717 | Msa0101000:CDS |
AATGGATCACAACCATGCTT+TGG | 0.538091 | 1_3:-7511931 | Msa0101000:CDS |
TAATAAGAAATGACTTAGAC+TGG | 0.538323 | 1_3:+7510978 | None:intergenic |
AATTGAGCTCATTGATGCAT+TGG | 0.538886 | 1_3:+7510329 | None:intergenic |
ATTATTATTGTTCCAAACAA+GGG | 0.540953 | 1_3:-7512088 | Msa0101000:CDS |
AGGTGAAGTTGCTTATCAAA+GGG | 0.546039 | 1_3:-7512033 | Msa0101000:CDS |
AACATTAGAAGGCCCATCCA+TGG | 0.546919 | 1_3:+7510009 | None:intergenic |
TACAGATCAAGATGGAGCCA+TGG | 0.551336 | 1_3:-7511349 | Msa0101000:CDS |
TCAAATCATATGTATTAGTA+CGG | 0.557489 | 1_3:+7511520 | None:intergenic |
GCGACAATTAGAGACTGAAA+AGG | 0.558235 | 1_3:-7510929 | Msa0101000:CDS |
ATATGTATTAGTACGGTAAG+TGG | 0.559004 | 1_3:+7511527 | None:intergenic |
AAGGACAAATTGTAAAGCAA+TGG | 0.564077 | 1_3:-7512003 | Msa0101000:CDS |
ATAAAGTCTATGGTGAATGC+TGG | 0.565519 | 1_3:-7511843 | Msa0101000:CDS |
GCTCGAGCGGCACCAAAGCA+TGG | 0.565748 | 1_3:+7511919 | None:intergenic |
GGTTATCATTCCTCAAATTG+GGG | 0.572895 | 1_3:-7509838 | Msa0101000:CDS |
GGTCTAATACTCGCATGAAA+GGG | 0.573652 | 1_3:-7510207 | Msa0101000:CDS |
ATGTGGAAATTGGTTTATGG+TGG | 0.575140 | 1_3:-7510367 | Msa0101000:CDS |
TGGTCAAGTTGTGCATAGCA+AGG | 0.581013 | 1_3:-7512219 | Msa0101000:CDS |
TTCTAATGTTCTCAATAACA+TGG | 0.585453 | 1_3:-7509996 | Msa0101000:CDS |
ACCATCTCTCCAAAACACAT+TGG | 0.590535 | 1_3:+7511599 | None:intergenic |
GGTGCGATTTAATGTTAGCA+AGG | 0.593147 | 1_3:-7511982 | Msa0101000:CDS |
ATCTTAGTAAATGAAATGGA+TGG | 0.594963 | 1_3:+7509805 | None:intergenic |
AAGAAACTCAACAAATCATG+TGG | 0.606948 | 1_3:-7510384 | Msa0101000:CDS |
TCTCACTGATATTTATGATG+CGG | 0.607441 | 1_3:+7510878 | None:intergenic |
TTAAGATCACCAAAATGAGA+AGG | 0.607446 | 1_3:+7511255 | None:intergenic |
CTGCACACTATAGTAGAACA+TGG | 0.618082 | 1_3:+7511644 | None:intergenic |
TTGAAAAGATGGTAAACAAG+TGG | 0.620155 | 1_3:-7510951 | Msa0101000:CDS |
TTTAAGAACAATGAACCAGA+AGG | 0.621796 | 1_3:-7512065 | Msa0101000:CDS |
TCAGAAAATGCAATGAACAA+TGG | 0.628270 | 1_3:-7510484 | Msa0101000:CDS |
ATGGAGCACTGCATATAGCA+AGG | 0.629512 | 1_3:-7511082 | Msa0101000:CDS |
ACAACTGATCGTTGCAGCAG+AGG | 0.638921 | 1_3:+7510678 | None:intergenic |
GAACCAGAAGGAGAAATCGT+AGG | 0.643994 | 1_3:-7512053 | Msa0101000:CDS |
AGAAAAGTATCAGAAACCAA+AGG | 0.645801 | 1_3:-7511873 | Msa0101000:CDS |
AACAAATGTCTTTGCTCGAG+CGG | 0.656974 | 1_3:+7511906 | None:intergenic |
TATAACTTATACCAAGAACA+TGG | 0.669118 | 1_3:-7512188 | Msa0101000:CDS |
AAGTACTTCTAAAGACATTG+GGG | 0.673250 | 1_3:-7510776 | Msa0101000:CDS |
TATGCCTAATAAGAAACATG+TGG | 0.676676 | 1_3:-7510713 | Msa0101000:CDS |
CTGATATTTATGATGCGGGG+AGG | 0.680172 | 1_3:+7510883 | None:intergenic |
GAAAATGCAATGAACAATGG+TGG | 0.690247 | 1_3:-7510481 | Msa0101000:CDS |
AAAGTATCAGAAACCAAAGG+AGG | 0.690747 | 1_3:-7511870 | Msa0101000:CDS |
TCACTGATATTTATGATGCG+GGG | 0.700675 | 1_3:+7510880 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTCTTTTACATAATTTAATA+GGG | - | chr1_3:7512044-7512063 | Msa0101000:CDS | 10.0% |
!! | GAAAAGAGTAAATTAATTAA+AGG | - | chr1_3:7510183-7510202 | Msa0101000:CDS | 15.0% |
!!! | GTTTTTTTATAATCTAGTTT+TGG | - | chr1_3:7511481-7511500 | Msa0101000:CDS | 15.0% |
!! | CTATTAAATTATGTAAAAGA+AGG | + | chr1_3:7512045-7512064 | None:intergenic | 15.0% |
!!! | CTTCTTTTACATAATTTAAT+AGG | - | chr1_3:7512043-7512062 | Msa0101000:CDS | 15.0% |
!! | ATTATTATTGTTCCAAACAA+GGG | - | chr1_3:7509815-7509834 | Msa0101000:CDS | 20.0% |
!! | AAGAGTAAATTAATTAAAGG+TGG | - | chr1_3:7510186-7510205 | Msa0101000:CDS | 20.0% |
!! | AAAACAATCATAATCAACTT+TGG | + | chr1_3:7510334-7510353 | None:intergenic | 20.0% |
!!! | AAAGTTGATTATGATTGTTT+TGG | - | chr1_3:7510333-7510352 | Msa0101000:CDS | 20.0% |
!! | TCAAATCATATGTATTAGTA+CGG | + | chr1_3:7510386-7510405 | None:intergenic | 20.0% |
!!! | TGATCTGTAAAAAATGTTTT+TGG | + | chr1_3:7510543-7510562 | None:intergenic | 20.0% |
!! | TGTATAAAATTCGTCATAAA+TGG | - | chr1_3:7510802-7510821 | Msa0101000:CDS | 20.0% |
!! | AAAAAATTTCACTCAAAATG+AGG | - | chr1_3:7511622-7511641 | Msa0101000:CDS | 20.0% |
!! | GATAAATTATAAACCTCTAA+AGG | + | chr1_3:7511971-7511990 | None:intergenic | 20.0% |
!! | ACTTAAAAGTTATCAAGAAA+TGG | + | chr1_3:7511995-7512014 | None:intergenic | 20.0% |
!! | TAACATCTTAGTAAATGAAA+TGG | + | chr1_3:7512105-7512124 | None:intergenic | 20.0% |
! | TATAACTTATACCAAGAACA+TGG | - | chr1_3:7509715-7509734 | Msa0101000:intron | 25.0% |
! | GATTATTATTGTTCCAAACA+AGG | - | chr1_3:7509814-7509833 | Msa0101000:CDS | 25.0% |
! | GTATGAAAGTTACTAATGTT+TGG | - | chr1_3:7510082-7510101 | Msa0101000:intron | 25.0% |
!! | ACTAATGTTTGGAGTTATTT+AGG | - | chr1_3:7510093-7510112 | Msa0101000:intron | 25.0% |
! | CAAGTGATTGATTAAAGATT+GGG | + | chr1_3:7510217-7510236 | None:intergenic | 25.0% |
!! | AAACTTCTGTTTCTTTCAAT+TGG | - | chr1_3:7510478-7510497 | Msa0101000:CDS | 25.0% |
!!! | TTGGCTATTTAAAGTGTTTT+TGG | - | chr1_3:7510497-7510516 | Msa0101000:CDS | 25.0% |
!!! | ACATTTTTTACAGATCAAGA+TGG | - | chr1_3:7510546-7510565 | Msa0101000:CDS | 25.0% |
! | ATATATGCCATAAGCATAAA+CGG | + | chr1_3:7510617-7510636 | None:intergenic | 25.0% |
!!! | AAAAGTTTCATGGTTTGTTT+TGG | - | chr1_3:7510679-7510698 | Msa0101000:CDS | 25.0% |
! | TAATAAGAAATGACTTAGAC+TGG | + | chr1_3:7510928-7510947 | None:intergenic | 25.0% |
! | CTTATTAGCATTTGAAAAGA+TGG | - | chr1_3:7510941-7510960 | Msa0101000:CDS | 25.0% |
!!! | TTGAGTGAAATTTTTTTCAC+TGG | + | chr1_3:7511618-7511637 | None:intergenic | 25.0% |
! | ATGTTATTGAGAACATTAGA+AGG | + | chr1_3:7511908-7511927 | None:intergenic | 25.0% |
! | TTCTAATGTTCTCAATAACA+TGG | - | chr1_3:7511907-7511926 | Msa0101000:CDS | 25.0% |
! | AGTTATGAATGATTTCATTG+TGG | - | chr1_3:7512012-7512031 | Msa0101000:CDS | 25.0% |
! | ATCTTAGTAAATGAAATGGA+TGG | + | chr1_3:7512101-7512120 | None:intergenic | 25.0% |
! | TCATTTACTAAGATGTTACA+AGG | - | chr1_3:7512107-7512126 | Msa0101000:CDS | 25.0% |
TGACCAAGAAAAATATCTCT+GGG | + | chr1_3:7509670-7509689 | None:intergenic | 30.0% | |
TTGACCAAGAAAAATATCTC+TGG | + | chr1_3:7509671-7509690 | None:intergenic | 30.0% | |
ATTGTTCTTAAACCCTTGTT+TGG | + | chr1_3:7509830-7509849 | None:intergenic | 30.0% | |
TTTAAGAACAATGAACCAGA+AGG | - | chr1_3:7509838-7509857 | Msa0101000:CDS | 30.0% | |
AAGGACAAATTGTAAAGCAA+TGG | - | chr1_3:7509900-7509919 | Msa0101000:intron | 30.0% | |
!! | GCGAATTACTAAGTTGATAA+TGG | - | chr1_3:7509954-7509973 | Msa0101000:CDS | 30.0% |
!! | AGAAAAGTATCAGAAACCAA+AGG | - | chr1_3:7510030-7510049 | Msa0101000:CDS | 30.0% |
GCAAGTGATTGATTAAAGAT+TGG | + | chr1_3:7510218-7510237 | None:intergenic | 30.0% | |
ATATGTATTAGTACGGTAAG+TGG | + | chr1_3:7510379-7510398 | None:intergenic | 30.0% | |
CATTTGCAAAATGTCATGTT+TGG | - | chr1_3:7510435-7510454 | Msa0101000:CDS | 30.0% | |
TTAAGATCACCAAAATGAGA+AGG | + | chr1_3:7510651-7510670 | None:intergenic | 30.0% | |
AACTCTGATCAAAAGTTTCA+TGG | - | chr1_3:7510669-7510688 | Msa0101000:CDS | 30.0% | |
GATTCAAAAGAAGAGTTTGA+AGG | - | chr1_3:7510720-7510739 | Msa0101000:CDS | 30.0% | |
ACAAGCTTCAAAATCACAAA+TGG | - | chr1_3:7510769-7510788 | Msa0101000:CDS | 30.0% | |
TTGAAAAGATGGTAAACAAG+TGG | - | chr1_3:7510952-7510971 | Msa0101000:CDS | 30.0% | |
TCTCACTGATATTTATGATG+CGG | + | chr1_3:7511028-7511047 | None:intergenic | 30.0% | |
! | TTTTTGAATGAGTATCTTGC+TGG | - | chr1_3:7511095-7511114 | Msa0101000:CDS | 30.0% |
! | GAAGTACTTCTAAAGACATT+GGG | - | chr1_3:7511126-7511145 | Msa0101000:CDS | 30.0% |
! | AAGTACTTCTAAAGACATTG+GGG | - | chr1_3:7511127-7511146 | Msa0101000:CDS | 30.0% |
TATGCCTAATAAGAAACATG+TGG | - | chr1_3:7511190-7511209 | Msa0101000:CDS | 30.0% | |
ACTACCACATGTTTCTTATT+AGG | + | chr1_3:7511197-7511216 | None:intergenic | 30.0% | |
TTGTCGAAAGTTTGATTCAA+TGG | - | chr1_3:7511250-7511269 | Msa0101000:CDS | 30.0% | |
TGTCGAAAGTTTGATTCAAT+GGG | - | chr1_3:7511251-7511270 | Msa0101000:CDS | 30.0% | |
TTGCGAATTTACAACATCAA+AGG | - | chr1_3:7511293-7511312 | Msa0101000:CDS | 30.0% | |
AAGATGGTCAAAAAAAGCAA+GGG | - | chr1_3:7511349-7511368 | Msa0101000:CDS | 30.0% | |
TCAGAAAATGCAATGAACAA+TGG | - | chr1_3:7511419-7511438 | Msa0101000:CDS | 30.0% | |
TCATAATAGCATTGCGATAA+AGG | + | chr1_3:7511460-7511479 | None:intergenic | 30.0% | |
AAGAAACTCAACAAATCATG+TGG | - | chr1_3:7511519-7511538 | Msa0101000:CDS | 30.0% | |
TCAACAAATCATGTGGAAAT+TGG | - | chr1_3:7511526-7511545 | Msa0101000:CDS | 30.0% | |
! | ATCATGTGGAAATTGGTTTA+TGG | - | chr1_3:7511533-7511552 | Msa0101000:CDS | 30.0% |
!! | GGGCATTTTGAAAAAAGAAA+AGG | - | chr1_3:7511716-7511735 | Msa0101000:CDS | 30.0% |
! | AATGTTCCTTCTACTTCTTT+TGG | - | chr1_3:7511941-7511960 | Msa0101000:CDS | 30.0% |
AGTATTTAAACCCCAATTTG+AGG | + | chr1_3:7512078-7512097 | None:intergenic | 30.0% | |
ACTAAGATGTTACAAGGAAT+TGG | - | chr1_3:7512113-7512132 | Msa0101000:CDS | 30.0% | |
ATTCAGGTATGTATGTATGT+AGG | - | chr1_3:7512152-7512171 | Msa0101000:CDS | 30.0% | |
TATTCAGTTATATTGCATGC+AGG | - | chr1_3:7512225-7512244 | Msa0101000:CDS | 30.0% | |
! | TTTTATGTTCTTGCCTATCT+TGG | + | chr1_3:7512270-7512289 | None:intergenic | 30.0% |
! | AAGCCCAGAGATATTTTTCT+TGG | - | chr1_3:7509664-7509683 | Msa0101000:intron | 35.0% |
!! | ATGGGTTTTAGTGTGAGAAA+AGG | - | chr1_3:7509745-7509764 | Msa0101000:intron | 35.0% |
!! | TGGGTTTTAGTGTGAGAAAA+GGG | - | chr1_3:7509746-7509765 | Msa0101000:intron | 35.0% |
! | TTTTAGTGTGAGAAAAGGGA+AGG | - | chr1_3:7509750-7509769 | Msa0101000:intron | 35.0% |
TAGGTGAAGTTGCTTATCAA+AGG | - | chr1_3:7509869-7509888 | Msa0101000:intron | 35.0% | |
AGGTGAAGTTGCTTATCAAA+GGG | - | chr1_3:7509870-7509889 | Msa0101000:intron | 35.0% | |
CGATTTAATGTTAGCAAGGA+TGG | - | chr1_3:7509925-7509944 | Msa0101000:intron | 35.0% | |
! | AAAGTATCAGAAACCAAAGG+AGG | - | chr1_3:7510033-7510052 | Msa0101000:CDS | 35.0% |
ATAAAGTCTATGGTGAATGC+TGG | - | chr1_3:7510060-7510079 | Msa0101000:intron | 35.0% | |
TTGGAGTTATTTAGGAGAAG+AGG | - | chr1_3:7510101-7510120 | Msa0101000:intron | 35.0% | |
AGTTATTTAGGAGAAGAGGT+TGG | - | chr1_3:7510105-7510124 | Msa0101000:intron | 35.0% | |
! | CATTGGTTAAACGTGATTCT+TGG | + | chr1_3:7510290-7510309 | None:intergenic | 35.0% |
! | CACGTTTAACCAATGTGTTT+TGG | - | chr1_3:7510295-7510314 | Msa0101000:CDS | 35.0% |
!!! | TGATTGTTTTGGAGATGTTG+TGG | - | chr1_3:7510344-7510363 | Msa0101000:CDS | 35.0% |
! | TTGATATGTGCTCCTTTTGT+TGG | - | chr1_3:7510402-7510421 | Msa0101000:CDS | 35.0% |
! | TGATATGTGCTCCTTTTGTT+GGG | - | chr1_3:7510403-7510422 | Msa0101000:CDS | 35.0% |
TGATGATTTACCCCAACAAA+AGG | + | chr1_3:7510417-7510436 | None:intergenic | 35.0% | |
!!! | TAAAGTGTTTTTGGAGAGCA+TGG | - | chr1_3:7510506-7510525 | Msa0101000:CDS | 35.0% |
!!! | AAAGTGTTTTTGGAGAGCAT+GGG | - | chr1_3:7510507-7510526 | Msa0101000:CDS | 35.0% |
CATAAACGGTGACATGTATT+TGG | + | chr1_3:7510603-7510622 | None:intergenic | 35.0% | |
!!! | TTGTTTTGGAAATGCATGTC+AGG | - | chr1_3:7510693-7510712 | Msa0101000:CDS | 35.0% |
TCACTGATATTTATGATGCG+GGG | + | chr1_3:7511026-7511045 | None:intergenic | 35.0% | |
CTCACTGATATTTATGATGC+GGG | + | chr1_3:7511027-7511046 | None:intergenic | 35.0% | |
!! | GGAAGTACTTCTAAAGACAT+TGG | - | chr1_3:7511125-7511144 | Msa0101000:CDS | 35.0% |
! | ACCAATACTTTCTGAGAAGA+TGG | - | chr1_3:7511333-7511352 | Msa0101000:CDS | 35.0% |
! | ACCATCTTCTCAGAAAGTAT+TGG | + | chr1_3:7511337-7511356 | None:intergenic | 35.0% |
GAAGATGGTCAAAAAAAGCA+AGG | - | chr1_3:7511348-7511367 | Msa0101000:CDS | 35.0% | |
GAAAATGCAATGAACAATGG+TGG | - | chr1_3:7511422-7511441 | Msa0101000:CDS | 35.0% | |
!!! | TAATCTAGTTTTGGATAGCC+AGG | - | chr1_3:7511490-7511509 | Msa0101000:CDS | 35.0% |
! | ATGTGGAAATTGGTTTATGG+TGG | - | chr1_3:7511536-7511555 | Msa0101000:CDS | 35.0% |
AATTGAGCTCATTGATGCAT+TGG | + | chr1_3:7511577-7511596 | None:intergenic | 35.0% | |
! | TTGTTCCATTAGTTCTTCCA+TGG | - | chr1_3:7511877-7511896 | Msa0101000:CDS | 35.0% |
AGGGTTATCATTCCTCAAAT+TGG | - | chr1_3:7512063-7512082 | Msa0101000:CDS | 35.0% | |
GGGTTATCATTCCTCAAATT+GGG | - | chr1_3:7512064-7512083 | Msa0101000:CDS | 35.0% | |
GGTTATCATTCCTCAAATTG+GGG | - | chr1_3:7512065-7512084 | Msa0101000:CDS | 35.0% | |
!! | CACATGTAACTCATTGATTC+AGG | - | chr1_3:7512136-7512155 | Msa0101000:CDS | 35.0% |
CAAGAACATGGCTTCAAGAT+GGG | - | chr1_3:7509727-7509746 | Msa0101000:intron | 40.0% | |
! | CTTATCAAAGGGCTGATTCA+AGG | - | chr1_3:7509881-7509900 | Msa0101000:intron | 40.0% |
GGTGCGATTTAATGTTAGCA+AGG | - | chr1_3:7509921-7509940 | Msa0101000:intron | 40.0% | |
ATGTTAGCAAGGATGGAGAA+TGG | - | chr1_3:7509932-7509951 | Msa0101000:intron | 40.0% | |
AATGGATCACAACCATGCTT+TGG | - | chr1_3:7509972-7509991 | Msa0101000:CDS | 40.0% | |
AACAAATGTCTTTGCTCGAG+CGG | + | chr1_3:7510000-7510019 | None:intergenic | 40.0% | |
AGACTTTATGAGACCTCCTT+TGG | + | chr1_3:7510049-7510068 | None:intergenic | 40.0% | |
AGGAGGTCTCATAAAGTCTA+TGG | - | chr1_3:7510050-7510069 | Msa0101000:CDS | 40.0% | |
TATTTAGGAGAAGAGGTTGG+TGG | - | chr1_3:7510108-7510127 | Msa0101000:intron | 40.0% | |
!! | GTTGGTGGATTTGATAAGCT+TGG | - | chr1_3:7510123-7510142 | Msa0101000:intron | 40.0% |
CTGCACACTATAGTAGAACA+TGG | + | chr1_3:7510262-7510281 | None:intergenic | 40.0% | |
!!! | ACCAATGTGTTTTGGAGAGA+TGG | - | chr1_3:7510303-7510322 | Msa0101000:CDS | 40.0% |
ACCATCTCTCCAAAACACAT+TGG | + | chr1_3:7510307-7510326 | None:intergenic | 40.0% | |
! | GATATGTGCTCCTTTTGTTG+GGG | - | chr1_3:7510404-7510423 | Msa0101000:CDS | 40.0% |
CATGTCACCGTTTATGCTTA+TGG | - | chr1_3:7510607-7510626 | Msa0101000:CDS | 40.0% | |
! | CAGAATGCACCTTCTCATTT+TGG | - | chr1_3:7510639-7510658 | Msa0101000:CDS | 40.0% |
!! | AAGAAGAGTTTGAAGGCACT+TGG | - | chr1_3:7510727-7510746 | Msa0101000:CDS | 40.0% |
GCGACAATTAGAGACTGAAA+AGG | - | chr1_3:7510974-7510993 | Msa0101000:CDS | 40.0% | |
AATGAGTATCTTGCTGGAAC+TGG | - | chr1_3:7511101-7511120 | Msa0101000:CDS | 40.0% | |
!! | CTTCTCAGAAAGTATTGGTC+AGG | + | chr1_3:7511332-7511351 | None:intergenic | 40.0% |
AGCATTGCGATAAAGGATCA+TGG | + | chr1_3:7511453-7511472 | None:intergenic | 40.0% | |
GTTGAGTTTCTTTGTGTTCC+TGG | + | chr1_3:7511511-7511530 | None:intergenic | 40.0% | |
!!! | ACCTTCCTTTAGTTTTTGCG+CGG | + | chr1_3:7511679-7511698 | None:intergenic | 40.0% |
AGGTCTAATACTCGCATGAA+AGG | - | chr1_3:7511695-7511714 | Msa0101000:CDS | 40.0% | |
GGTCTAATACTCGCATGAAA+GGG | - | chr1_3:7511696-7511715 | Msa0101000:CDS | 40.0% | |
! | TCCATTAGTTCTTCCATGGA+TGG | - | chr1_3:7511881-7511900 | Msa0101000:CDS | 40.0% |
! | CCATTAGTTCTTCCATGGAT+GGG | - | chr1_3:7511882-7511901 | Msa0101000:CDS | 40.0% |
!! | TTCTTTTGGTGCACCTTTAG+AGG | - | chr1_3:7511955-7511974 | Msa0101000:CDS | 40.0% |
!! | CTATCTTGGAAAGCACTACT+TGG | + | chr1_3:7512256-7512275 | None:intergenic | 40.0% |
CAAGTAGTGCTTTCCAAGAT+AGG | - | chr1_3:7512254-7512273 | Msa0101000:CDS | 40.0% | |
! | TGGTCAAGTTGTGCATAGCA+AGG | - | chr1_3:7509684-7509703 | Msa0101000:intron | 45.0% |
CCATCTTGAAGCCATGTTCT+TGG | + | chr1_3:7509729-7509748 | None:intergenic | 45.0% | |
CCAAGAACATGGCTTCAAGA+TGG | - | chr1_3:7509726-7509745 | Msa0101000:intron | 45.0% | |
GAACCAGAAGGAGAAATCGT+AGG | - | chr1_3:7509850-7509869 | Msa0101000:intron | 45.0% | |
TCACCTACGATTTCTCCTTC+TGG | + | chr1_3:7509856-7509875 | None:intergenic | 45.0% | |
TACAGATCAAGATGGAGCCA+TGG | - | chr1_3:7510554-7510573 | Msa0101000:CDS | 45.0% | |
CATAACGTCTCCGATTGCTT+TGG | + | chr1_3:7510580-7510599 | None:intergenic | 45.0% | |
!! | ATGGAGCACTGCATATAGCA+AGG | - | chr1_3:7510821-7510840 | Msa0101000:CDS | 45.0% |
AGTGTGTTAAGTGCGATTGC+CGG | - | chr1_3:7510894-7510913 | Msa0101000:CDS | 45.0% | |
CTGATATTTATGATGCGGGG+AGG | + | chr1_3:7511023-7511042 | None:intergenic | 45.0% | |
CCCATCCATGGAAGAACTAA+TGG | + | chr1_3:7511885-7511904 | None:intergenic | 45.0% | |
AACATTAGAAGGCCCATCCA+TGG | + | chr1_3:7511897-7511916 | None:intergenic | 45.0% | |
GGTGCACCAAAAGAAGTAGA+AGG | + | chr1_3:7511950-7511969 | None:intergenic | 45.0% | |
! | ACTTAGACTGGTTGCTGCTC+CGG | + | chr1_3:7510916-7510935 | None:intergenic | 50.0% |
GAGTATCTTGCTGGAACTGG+TGG | - | chr1_3:7511104-7511123 | Msa0101000:CDS | 50.0% | |
ACAACTGATCGTTGCAGCAG+AGG | + | chr1_3:7511228-7511247 | None:intergenic | 50.0% | |
GCCGCGCAAAAACTAAAGGA+AGG | - | chr1_3:7511675-7511694 | Msa0101000:CDS | 50.0% | |
GGAGCCATGGCCAAAGCAAT+CGG | - | chr1_3:7510567-7510586 | Msa0101000:CDS | 55.0% | |
GTCTCCGATTGCTTTGGCCA+TGG | + | chr1_3:7510574-7510593 | None:intergenic | 55.0% | |
! | TGATGCGGGGAGGCATACTT+TGG | + | chr1_3:7511013-7511032 | None:intergenic | 55.0% |
!!! | CCTTTAGTTTTTGCGCGGCG+AGG | + | chr1_3:7511674-7511693 | None:intergenic | 55.0% |
CCTCGCCGCGCAAAAACTAA+AGG | - | chr1_3:7511671-7511690 | Msa0101000:CDS | 55.0% | |
GCTCGAGCGGCACCAAAGCA+TGG | + | chr1_3:7509987-7510006 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_3 | gene | 7509628 | 7512297 | 7509628 | ID=Msa0101000;Name=Msa0101000 |
chr1_3 | mRNA | 7509628 | 7512297 | 7509628 | ID=Msa0101000-mRNA-1;Parent=Msa0101000;Name=Msa0101000-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|0|0|0.25|1|1|4|0|801 |
chr1_3 | exon | 7510158 | 7512297 | 7510158 | ID=Msa0101000-mRNA-1:exon:2997;Parent=Msa0101000-mRNA-1 |
chr1_3 | exon | 7509949 | 7510070 | 7509949 | ID=Msa0101000-mRNA-1:exon:2996;Parent=Msa0101000-mRNA-1 |
chr1_3 | exon | 7509768 | 7509860 | 7509768 | ID=Msa0101000-mRNA-1:exon:2995;Parent=Msa0101000-mRNA-1 |
chr1_3 | exon | 7509628 | 7509678 | 7509628 | ID=Msa0101000-mRNA-1:exon:2994;Parent=Msa0101000-mRNA-1 |
chr1_3 | CDS | 7510158 | 7512297 | 7510158 | ID=Msa0101000-mRNA-1:cds;Parent=Msa0101000-mRNA-1 |
chr1_3 | CDS | 7509949 | 7510070 | 7509949 | ID=Msa0101000-mRNA-1:cds;Parent=Msa0101000-mRNA-1 |
chr1_3 | CDS | 7509768 | 7509860 | 7509768 | ID=Msa0101000-mRNA-1:cds;Parent=Msa0101000-mRNA-1 |
chr1_3 | CDS | 7509628 | 7509678 | 7509628 | ID=Msa0101000-mRNA-1:cds;Parent=Msa0101000-mRNA-1 |
Gene Sequence |
Protein sequence |