AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0101090

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0101090 MtrunA17_Chr8g0355091 92.405 237 18 0 1 237 1 237 1.64e-163 451
Msa0101090 MtrunA17_Chr1g0149391 94.093 237 14 0 1 237 1 237 8.74e-155 429
Msa0101090 MtrunA17_Chr1g0206701 90.295 237 23 0 1 237 1 237 3.33e-150 418
Msa0101090 MtrunA17_Chr1g0206721 89.912 228 23 0 1 228 1 228 2.67e-145 405
Msa0101090 MtrunA17_Chr2g0292791 88.186 237 28 0 1 237 1 237 8.09e-145 404
Msa0101090 MtrunA17_Chr1g0206691 85.909 220 31 0 18 237 1 220 7.78e-141 393
Msa0101090 MtrunA17_Chr3g0099421 85.388 219 32 0 1 219 26 244 2.20e-140 394
Msa0101090 MtrunA17_Chr3g0099411 80.365 219 24 1 1 219 1 200 1.09e-124 352
Msa0101090 MtrunA17_Chr5g0422941 67.932 237 76 0 1 237 1 237 1.15e-118 338
Msa0101090 MtrunA17_Chr3g0089141 73.191 235 45 3 1 225 1 227 3.26e-118 337
Msa0101090 MtrunA17_Chr2g0300441 70.464 237 69 1 1 237 1 236 2.41e-117 335
Msa0101090 MtrunA17_Chr1g0208561 73.191 235 45 3 1 225 1 227 2.50e-117 334
Msa0101090 MtrunA17_Chr2g0317451 67.373 236 77 0 1 236 1 236 2.52e-117 335
Msa0101090 MtrunA17_Chr2g0317481 67.373 236 77 0 1 236 1 236 7.45e-117 333
Msa0101090 MtrunA17_Chr1g0188671 70.222 225 67 0 1 225 39 263 8.94e-116 332
Msa0101090 MtrunA17_Chr1g0206991 86.813 182 24 0 1 182 1 182 1.72e-115 328
Msa0101090 MtrunA17_Chr5g0419601 71.730 237 67 0 1 237 1 237 1.76e-115 330
Msa0101090 MtrunA17_Chr1g0187361 70.667 225 66 0 1 225 1 225 1.12e-114 328
Msa0101090 MtrunA17_Chr2g0325971 71.489 235 49 3 1 225 1 227 6.13e-113 323
Msa0101090 MtrunA17_Chr1g0208581 70.213 235 52 3 1 225 1 227 8.83e-111 318
Msa0101090 MtrunA17_Chr5g0422421 68.889 225 70 0 1 225 1 225 1.55e-110 317
Msa0101090 MtrunA17_Chr7g0238991 62.712 236 86 2 3 237 14 248 8.14e-99 288
Msa0101090 MtrunA17_Chr2g0300421 78.906 128 27 0 1 128 1 128 8.24e-67 204
Msa0101090 MtrunA17_Chr3g0085241 51.852 189 81 1 3 191 35 213 6.38e-66 204
Msa0101090 MtrunA17_Chr3g0089151 75.194 129 32 0 1 129 1 129 1.84e-64 197
Msa0101090 MtrunA17_Chr3g0119901 50.262 191 91 1 7 193 7 197 7.82e-64 198
Msa0101090 MtrunA17_Chr3g0111931 67.647 102 33 0 21 122 2 103 1.91e-44 145
Msa0101090 MtrunA17_Chr2g0333981 39.766 171 93 2 5 172 8 171 6.67e-41 138
Msa0101090 MtrunA17_Chr8g0379021 40.462 173 89 3 5 170 8 173 4.51e-39 134
Msa0101090 MtrunA17_Chr4g0018951 45.161 155 73 3 5 159 8 150 2.50e-36 126
Msa0101090 MtrunA17_Chr1g0187351 81.818 66 12 0 18 83 1 66 4.99e-33 114
Msa0101090 MtrunA17_Chr3g0111841 86.441 59 8 0 15 73 2 60 1.31e-30 108
Msa0101090 MtrunA17_Chr4g0071601 37.500 184 95 4 5 175 8 184 2.74e-30 111
Msa0101090 MtrunA17_Chr3g0111831 72.131 61 17 0 16 76 11 71 4.08e-25 94.7
Msa0101090 MtrunA17_Chr1g0175601 45.946 111 57 2 9 118 2 110 3.46e-24 95.5
Msa0101090 MtrunA17_Chr1g0169761 40.559 143 67 4 9 135 2 142 6.85e-24 94.4
Msa0101090 MtrunA17_Chr4g0074101 32.941 170 87 4 9 162 2 160 9.86e-24 94.7
Msa0101090 MtrunA17_Chr8g0357771 37.195 164 85 3 9 169 2 150 1.66e-23 93.6
Msa0101090 MtrunA17_Chr8g0376821 44.643 112 57 3 9 118 2 110 3.53e-23 92.8
Msa0101090 MtrunA17_Chr1g0180591 45.536 112 56 3 9 118 2 110 4.20e-23 92.4
Msa0101090 MtrunA17_Chr1g0175611 43.363 113 62 1 9 121 2 112 7.18e-23 91.7
Msa0101090 MtrunA17_Chr8g0356071 36.620 142 82 2 9 147 2 138 1.71e-21 87.8
Msa0101090 MtrunA17_Chr4g0052061 41.509 106 60 1 9 114 2 105 4.04e-20 84.0
Msa0101090 MtrunA17_Chr3g0077501 52.941 68 32 0 9 76 2 69 4.44e-19 82.8
Msa0101090 MtrunA17_Chr8g0345001 33.544 158 92 3 8 159 17 167 7.45e-19 81.3
Msa0101090 MtrunA17_Chr4g0049901 57.576 66 28 0 10 75 29 94 9.57e-19 82.4
Msa0101090 MtrunA17_Chr3g0097101 46.429 84 45 0 3 86 11 94 2.24e-18 81.3
Msa0101090 MtrunA17_Chr4g0057151 50.685 73 36 0 10 82 3 75 3.26e-18 80.1
Msa0101090 MtrunA17_Chr4g0052081 41.509 106 61 1 9 113 2 107 3.66e-18 79.3
Msa0101090 MtrunA17_Chr2g0284911 32.558 172 100 4 9 170 17 182 5.86e-18 80.5
Msa0101090 MtrunA17_Chr5g0427401 51.471 68 33 0 9 76 2 69 1.13e-17 79.0
Msa0101090 MtrunA17_Chr3g0093131 34.266 143 77 4 26 159 36 170 2.04e-17 77.8
Msa0101090 MtrunA17_Chr6g0474371 49.275 69 34 1 9 76 2 70 2.13e-17 77.8
Msa0101090 MtrunA17_Chr8g0351051 51.471 68 33 0 9 76 2 69 2.60e-17 78.6
Msa0101090 MtrunA17_Chr8g0351041 47.436 78 41 0 10 87 3 80 3.07e-17 76.6
Msa0101090 MtrunA17_Chr8g0351031 27.876 226 129 7 10 220 3 209 3.75e-17 77.8
Msa0101090 MtrunA17_Chr8g0380021 51.471 68 33 0 9 76 18 85 4.46e-17 77.8
Msa0101090 MtrunA17_Chr5g0412271 30.405 148 86 2 9 156 2 132 4.49e-17 77.4
Msa0101090 MtrunA17_Chr3g0134451 42.308 104 57 3 9 111 2 103 6.22e-17 78.6
Msa0101090 MtrunA17_Chr2g0279821 48.529 68 35 0 9 76 2 69 9.39e-17 77.0
Msa0101090 MtrunA17_Chr4g0061691 47.826 69 35 1 9 76 2 70 1.31e-16 76.3
Msa0101090 MtrunA17_Chr5g0412461 48.529 68 35 0 9 76 2 69 1.63e-16 75.9
Msa0101090 MtrunA17_Chr1g0204111 50.000 68 34 0 9 76 18 85 1.84e-16 76.3
Msa0101090 MtrunA17_Chr7g0246431 38.182 110 66 1 10 119 3 110 2.49e-16 75.1
Msa0101090 MtrunA17_Chr4g0020221 51.471 68 33 0 9 76 2 69 5.04e-16 75.1
Msa0101090 MtrunA17_Chr4g0049541 47.059 68 36 0 9 76 2 69 6.99e-16 74.3
Msa0101090 MtrunA17_Chr8g0366231 36.792 106 63 2 9 114 2 103 8.06e-16 74.3
Msa0101090 MtrunA17_Chr7g0220111 49.275 69 34 1 9 76 2 70 1.13e-15 73.9
Msa0101090 MtrunA17_Chr6g0455511 49.275 69 34 1 9 76 2 70 1.22e-15 73.9
Msa0101090 MtrunA17_Chr1g0173161 52.459 61 29 0 9 69 2 62 2.05e-15 69.3
Msa0101090 MtrunA17_Chr5g0404951 50.000 70 33 1 9 76 2 71 2.09e-15 73.2
Msa0101090 MtrunA17_Chr5g0411691 48.529 68 35 0 9 76 2 69 2.20e-15 73.2
Msa0101090 MtrunA17_Chr5g0420081 45.070 71 36 1 9 79 2 69 3.13e-15 72.8
Msa0101090 MtrunA17_Chr5g0425191 56.604 53 23 0 9 61 2 54 3.78e-15 69.3
Msa0101090 MtrunA17_Chr2g0308251 47.826 69 36 0 9 77 2 70 4.13e-15 68.6
Msa0101090 MtrunA17_Chr5g0420091 47.826 69 35 1 9 76 2 70 7.41e-15 71.2
Msa0101090 MtrunA17_Chr4g0044071 52.632 57 27 0 9 65 2 58 1.08e-14 68.2
Msa0101090 MtrunA17_Chr8g0377561 53.571 56 26 0 9 64 2 57 1.55e-14 67.4
Msa0101090 MtrunA17_Chr1g0164791 47.143 70 35 1 9 76 2 71 1.81e-14 70.5
Msa0101090 MtrunA17_Chr7g0220121 43.478 69 38 1 9 76 2 70 1.86e-14 70.9
Msa0101090 MtrunA17_Chr5g0427921 49.123 57 29 0 9 65 2 58 2.73e-14 65.9
Msa0101090 MtrunA17_Chr3g0125241 44.286 70 37 1 9 76 27 96 2.77e-14 69.3
Msa0101090 MtrunA17_Chr4g0061671 50.877 57 28 0 9 65 2 58 3.21e-14 68.9
Msa0101090 MtrunA17_Chr1g0159661 46.970 66 34 1 9 74 2 66 3.30e-14 68.6
Msa0101090 MtrunA17_Chr7g0246381 52.632 57 27 0 9 65 2 58 3.83e-14 65.5
Msa0101090 MtrunA17_Chr3g0122251 47.826 69 35 1 9 76 2 70 5.48e-14 69.3
Msa0101090 MtrunA17_Chr3g0142191 47.619 63 33 0 9 71 2 64 1.38e-13 68.2
Msa0101090 MtrunA17_Chr4g0060841 28.977 176 103 7 9 172 2 167 2.19e-13 68.6
Msa0101090 MtrunA17_Chr4g0025531 28.512 242 137 8 5 230 5 226 8.63e-13 65.9
Msa0101090 MtrunA17_Chr2g0302091 30.303 165 83 7 7 159 36 180 2.91e-12 63.9
Msa0101090 MtrunA17_Chr5g0417661 42.029 69 34 1 9 77 57 119 5.97e-12 61.2
Msa0101090 MtrunA17_Chr4g0018421 40.000 70 41 1 9 77 2 71 1.03e-11 62.4
Msa0101090 MtrunA17_Chr1g0166611 42.857 77 43 1 20 95 17 93 7.65e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0101090 AT5G60440.1 54.255 188 79 3 5 189 3 186 1.18e-61 196
Msa0101090 AT2G24840.1 49.390 164 72 4 6 163 60 218 1.36e-44 150
Msa0101090 AT1G65360.1 39.207 227 123 6 5 225 3 220 2.70e-42 144
Msa0101090 AT1G01530.1 42.708 192 98 4 4 192 2 184 1.41e-41 142
Msa0101090 AT4G36590.1 46.296 162 81 2 5 160 3 164 1.47e-39 137
Msa0101090 AT2G34440.1 37.349 166 92 4 9 169 2 160 3.37e-28 105
Msa0101090 AT3G66656.1 41.985 131 71 2 9 134 2 132 1.97e-25 99.0
Msa0101090 AT3G04100.1 30.864 162 108 3 2 159 7 168 2.81e-22 91.3
Msa0101090 AT1G72350.1 33.553 152 68 3 9 160 43 161 3.95e-22 91.3
Msa0101090 AT2G45660.2 34.524 168 82 6 10 162 3 157 8.85e-20 83.6
Msa0101090 AT1G28460.1 31.429 175 104 5 5 169 4 172 2.44e-19 82.8
Msa0101090 AT4G22950.2 50.000 76 38 0 10 85 3 78 3.28e-19 82.4
Msa0101090 AT4G09960.2 46.512 86 45 1 9 93 2 87 3.44e-19 83.2
Msa0101090 AT2G45660.1 34.337 166 81 6 10 160 3 155 4.07e-19 83.2
Msa0101090 AT4G09960.1 46.512 86 45 1 9 93 2 87 4.08e-19 83.6
Msa0101090 AT4G09960.6 46.512 86 45 1 9 93 3 88 4.24e-19 83.6
Msa0101090 AT4G09960.5 46.512 86 45 1 9 93 12 97 5.40e-19 83.2
Msa0101090 AT4G09960.3 46.512 86 45 1 9 93 28 113 8.12e-19 83.2
Msa0101090 AT2G45650.1 52.941 68 32 0 9 76 2 69 1.35e-18 82.4
Msa0101090 AT4G22950.3 50.000 76 38 0 10 85 3 78 1.36e-18 81.6
Msa0101090 AT4G22950.1 50.000 76 38 0 10 85 3 78 1.36e-18 81.6
Msa0101090 AT4G18960.1 31.092 238 138 9 5 226 15 242 1.72e-18 82.4
Msa0101090 AT4G24540.1 35.811 148 78 4 9 156 2 132 1.95e-18 81.3
Msa0101090 AT4G09960.4 46.512 86 45 1 9 93 97 182 2.36e-18 83.2
Msa0101090 AT5G51870.2 53.731 67 31 0 10 76 3 69 2.31e-17 77.4
Msa0101090 AT2G22540.3 51.471 68 33 0 9 76 2 69 2.37e-17 79.0
Msa0101090 AT2G22540.1 51.471 68 33 0 9 76 2 69 2.37e-17 79.0
Msa0101090 AT5G51870.1 53.731 67 31 0 10 76 3 69 2.98e-17 77.8
Msa0101090 AT3G57230.2 47.059 68 36 0 9 76 2 69 4.16e-17 75.9
Msa0101090 AT5G51870.5 50.000 72 36 0 5 76 21 92 5.01e-17 77.0
Msa0101090 AT2G42830.1 50.704 71 35 0 6 76 14 84 5.57e-17 78.2
Msa0101090 AT5G51870.4 53.731 67 31 0 10 76 3 69 6.13e-17 77.4
Msa0101090 AT2G42830.2 50.704 71 35 0 6 76 14 84 6.23e-17 77.8
Msa0101090 AT3G58780.1 50.704 71 35 0 6 76 14 84 6.42e-17 77.8
Msa0101090 AT3G58780.5 50.704 71 35 0 6 76 20 90 6.74e-17 77.8
Msa0101090 AT5G51870.3 53.731 67 31 0 10 76 13 79 7.42e-17 77.4
Msa0101090 AT3G61120.1 51.471 68 33 0 9 76 2 69 8.18e-17 77.4
Msa0101090 AT5G10140.2 50.725 69 33 1 9 76 2 70 9.97e-17 75.5
Msa0101090 AT5G62165.14 49.254 67 34 0 10 76 3 69 1.04e-16 73.9
Msa0101090 AT1G77980.1 38.095 105 64 1 9 112 2 106 1.05e-16 78.6
Msa0101090 AT1G22130.1 37.143 105 65 1 9 112 2 106 1.07e-16 78.6
Msa0101090 AT4G37940.4 48.529 68 35 0 9 76 2 69 1.08e-16 76.6
Msa0101090 AT3G58780.4 50.704 71 35 0 6 76 14 84 1.17e-16 77.8
Msa0101090 AT3G57390.3 50.000 68 34 0 9 76 2 69 1.19e-16 76.6
Msa0101090 AT4G37940.1 48.529 68 35 0 9 76 2 69 1.34e-16 76.6
Msa0101090 AT5G10140.4 50.725 69 33 1 9 76 2 70 1.44e-16 75.5
Msa0101090 AT5G62165.6 49.254 67 34 0 10 76 3 69 1.47e-16 74.7
Msa0101090 AT5G62165.9 49.254 67 34 0 10 76 3 69 1.47e-16 74.7
Msa0101090 AT5G62165.7 49.254 67 34 0 10 76 3 69 1.47e-16 74.7
Msa0101090 AT5G62165.8 49.254 67 34 0 10 76 3 69 1.47e-16 74.7
Msa0101090 AT5G62165.13 49.254 67 34 0 10 76 3 69 1.47e-16 74.7
Msa0101090 AT4G37940.3 48.529 68 35 0 9 76 2 69 1.50e-16 75.5
Msa0101090 AT1G29962.1 29.714 175 110 5 5 169 4 175 1.50e-16 75.5
Msa0101090 AT1G77950.3 47.368 76 38 2 9 83 2 76 1.54e-16 77.0
Msa0101090 AT1G77950.2 47.368 76 38 2 9 83 2 76 1.54e-16 77.0
Msa0101090 AT1G77950.1 47.368 76 38 2 9 83 2 76 1.54e-16 77.0
Msa0101090 AT1G77950.4 47.368 76 38 2 9 83 2 76 1.54e-16 77.0
Msa0101090 AT5G62165.17 49.254 67 34 0 10 76 3 69 1.61e-16 74.7
Msa0101090 AT5G62165.12 49.254 67 34 0 10 76 3 69 1.61e-16 74.7
Msa0101090 AT5G62165.11 49.254 67 34 0 10 76 3 69 1.61e-16 74.7
Msa0101090 AT3G57230.1 47.059 68 36 0 9 76 2 69 1.68e-16 76.6
Msa0101090 AT3G57230.4 47.059 68 36 0 9 76 2 69 1.68e-16 76.6
Msa0101090 AT5G10140.1 50.725 69 33 1 9 76 2 70 1.68e-16 75.9
Msa0101090 AT5G10140.3 50.725 69 33 1 9 76 2 70 1.92e-16 75.5
Msa0101090 AT5G13790.2 43.011 93 44 1 9 101 2 85 1.94e-16 77.0
Msa0101090 AT3G54340.1 29.487 156 86 3 9 162 2 135 2.24e-16 76.3
Msa0101090 AT5G13790.1 51.471 68 33 0 9 76 2 69 2.47e-16 76.6
Msa0101090 AT3G57390.1 50.000 68 34 0 9 76 2 69 2.99e-16 76.3
Msa0101090 AT1G69120.2 43.373 83 44 1 9 91 2 81 4.30e-16 75.5
Msa0101090 AT4G11880.2 48.611 72 36 1 10 80 3 74 4.43e-16 74.3
Msa0101090 AT4G11880.3 48.611 72 36 1 10 80 3 74 4.43e-16 74.3
Msa0101090 AT5G51860.2 52.239 67 32 0 10 76 3 69 4.55e-16 74.7
Msa0101090 AT2G22630.1 47.059 68 36 0 9 76 2 69 5.32e-16 75.1
Msa0101090 AT2G22630.2 47.059 68 36 0 9 76 2 69 5.32e-16 75.1
Msa0101090 AT5G51860.1 52.239 67 32 0 10 76 3 69 5.63e-16 74.7
Msa0101090 AT5G62165.10 49.254 67 34 0 10 76 3 69 6.31e-16 73.9
Msa0101090 AT5G62165.4 49.254 67 34 0 10 76 3 69 6.31e-16 73.9
Msa0101090 AT5G60910.1 49.296 71 33 1 9 79 2 69 7.27e-16 74.7
Msa0101090 AT5G62165.3 49.254 67 34 0 10 76 3 69 7.28e-16 74.3
Msa0101090 AT5G62165.1 49.254 67 34 0 10 76 3 69 7.28e-16 74.3
Msa0101090 AT5G62165.2 49.254 67 34 0 10 76 3 69 7.28e-16 74.3
Msa0101090 AT4G11880.4 48.611 72 36 1 10 80 3 74 9.05e-16 74.3
Msa0101090 AT4G11880.1 48.611 72 36 1 10 80 3 74 9.05e-16 74.3
Msa0101090 AT1G26310.1 47.826 69 35 1 9 76 2 70 9.76e-16 74.7
Msa0101090 AT1G69120.1 40.659 91 51 1 9 99 2 89 1.01e-15 74.7
Msa0101090 AT3G30260.1 29.091 165 99 4 9 172 2 149 1.11e-15 74.3
Msa0101090 AT5G23260.4 44.330 97 46 3 2 90 9 105 1.74e-15 74.3
Msa0101090 AT5G23260.1 44.330 97 46 3 2 90 9 105 1.88e-15 73.9
Msa0101090 AT5G15800.1 49.275 69 34 1 9 76 2 70 3.05e-15 73.2
Msa0101090 AT5G20240.2 47.143 70 35 1 9 76 2 71 3.43e-15 70.9
Msa0101090 AT5G23260.3 45.455 88 42 2 9 90 2 89 3.65e-15 72.8
Msa0101090 AT5G23260.2 45.455 88 42 2 9 90 2 89 4.22e-15 72.8
Msa0101090 AT5G15800.2 49.275 69 34 1 9 76 2 70 5.14e-15 72.8
Msa0101090 AT1G17310.1 51.899 79 36 1 8 86 47 123 5.31e-15 72.0
Msa0101090 AT2G22540.2 50.000 68 29 1 9 76 2 64 5.34e-15 72.4
Msa0101090 AT1G17310.2 51.899 79 36 1 8 86 58 134 6.84e-15 72.0
Msa0101090 AT5G20240.1 47.143 70 35 1 9 76 2 71 7.21e-15 71.6
Msa0101090 AT2G14210.1 46.377 69 36 1 9 76 2 70 8.35e-15 71.6
Msa0101090 AT2G14210.2 46.377 69 36 1 9 76 2 70 1.05e-14 71.6
Msa0101090 AT3G58780.2 53.333 60 28 0 6 65 14 73 1.94e-14 70.9
Msa0101090 AT3G02310.2 47.826 69 35 1 9 76 2 70 2.17e-14 70.1
Msa0101090 AT5G65050.2 46.377 69 36 1 9 76 2 70 2.22e-14 69.7
Msa0101090 AT1G28450.1 29.518 166 102 6 5 161 4 163 2.31e-14 69.7
Msa0101090 AT3G58780.3 53.333 60 28 0 6 65 14 73 2.46e-14 71.2
Msa0101090 AT5G65050.5 46.377 69 36 1 9 76 2 70 3.51e-14 69.3
Msa0101090 AT5G65050.3 46.377 69 36 1 9 76 2 70 3.83e-14 69.3
Msa0101090 AT5G65050.1 46.377 69 36 1 9 76 2 70 4.19e-14 68.9
Msa0101090 AT2G03710.3 45.714 70 36 1 9 76 2 71 4.24e-14 68.9
Msa0101090 AT3G02310.1 47.826 69 35 1 9 76 2 70 4.69e-14 70.1
Msa0101090 AT5G65060.3 46.377 69 36 1 9 76 2 70 6.31e-14 68.6
Msa0101090 AT5G65060.2 46.377 69 36 1 9 76 2 70 6.39e-14 68.6
Msa0101090 AT5G65060.1 46.377 69 36 1 9 76 2 70 7.69e-14 68.6
Msa0101090 AT2G03710.2 45.714 70 36 1 9 76 2 71 8.55e-14 69.3
Msa0101090 AT2G03710.1 45.714 70 36 1 9 76 2 71 8.74e-14 69.3
Msa0101090 AT1G24260.3 29.707 239 136 9 9 234 2 221 1.09e-13 68.9
Msa0101090 AT1G24260.1 46.377 69 36 1 9 76 2 70 1.10e-13 68.9
Msa0101090 AT1G24260.2 53.571 56 26 0 9 64 2 57 1.17e-13 68.9
Msa0101090 AT1G71692.1 44.286 70 38 1 9 77 2 71 1.50e-13 67.8
Msa0101090 AT5G65070.4 42.029 69 39 1 9 76 2 70 3.00e-13 65.9
Msa0101090 AT1G47760.1 33.333 111 60 2 9 119 2 98 4.13e-13 66.2
Msa0101090 AT5G65070.1 42.029 69 39 1 9 76 2 70 5.81e-13 66.2
Msa0101090 AT5G65070.5 42.029 69 39 1 9 76 2 70 1.01e-12 65.5
Msa0101090 AT5G65070.2 42.029 69 39 1 9 76 2 70 1.15e-12 65.9
Msa0101090 AT5G65070.3 47.368 57 30 0 9 65 2 58 5.32e-12 63.9
Msa0101090 AT1G69540.1 37.778 90 52 3 9 95 2 90 2.13e-11 63.2
Msa0101090 AT4G37435.1 40.278 72 42 1 9 79 2 73 2.38e-11 61.2
Msa0101090 AT1G69540.2 37.778 90 52 3 9 95 2 90 2.62e-11 63.2
Msa0101090 AT5G65080.3 42.029 69 39 1 9 76 9 77 3.91e-11 60.8
Msa0101090 AT2G26320.1 40.000 70 40 1 9 76 18 87 4.05e-11 58.9
Msa0101090 AT1G18750.4 37.333 75 45 1 9 81 2 76 4.17e-11 62.4
Msa0101090 AT1G18750.3 37.333 75 45 1 9 81 2 76 4.63e-11 62.4
Msa0101090 AT1G18750.1 37.333 75 45 1 9 81 2 76 4.99e-11 62.4
Msa0101090 AT5G65080.2 43.548 62 35 0 1 62 1 62 6.95e-11 60.5
Msa0101090 AT2G03060.2 39.286 84 48 3 9 90 2 84 7.28e-11 62.0
Msa0101090 AT2G03060.3 39.286 84 48 3 9 90 2 84 7.76e-11 61.6
Msa0101090 AT2G03060.7 39.286 84 48 3 9 90 2 84 7.76e-11 61.6
Msa0101090 AT2G03060.1 39.286 84 48 3 9 90 2 84 7.76e-11 61.6

Find 50 sgRNAs with CRISPR-Local

Find 78 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGTTTGGTTTCAACAATA+TGG 0.234944 1_3:+7580162 Msa0101090:CDS
ATTTGAGTTTGCGGAGGATT+TGG 0.294464 1_3:-7580097 None:intergenic
TGGTGGGCTGGTTCCGTTGA+TGG 0.307687 1_3:+7579911 Msa0101090:CDS
GGCATCTTAAGGTCGATCTA+AGG 0.315745 1_3:-7580230 None:intergenic
ATTGCATGGTACCATTGTTT+TGG 0.337688 1_3:-7579754 None:intergenic
AGGCAACCGAGACTCAATTT+TGG 0.344827 1_3:+7579891 Msa0101090:CDS
TTGTTTGGTTTCAACAATAT+GGG 0.345119 1_3:+7580163 Msa0101090:CDS
GCTTCGAGAAAGTCACTTGC+AGG 0.384026 1_3:-7579577 None:intergenic
ATGTTGCAACCTCATTTGTT+TGG 0.384083 1_3:+7580148 Msa0101090:CDS
GACTCAGATCAACCAGCTAT+TGG 0.396679 1_3:+7579826 Msa0101090:CDS
GGTGGGCTGGTTCCGTTGAT+GGG 0.444286 1_3:+7579912 Msa0101090:CDS
TCTTCTCATTGTCCAATAGC+TGG 0.447890 1_3:-7579838 None:intergenic
TGCTAATAGACTTGTAATCC+AGG 0.466664 1_3:+7580003 Msa0101090:CDS
TTCCGTTGATGGGATGAATA+TGG 0.470577 1_3:+7579922 Msa0101090:CDS
ATGATCGAGAGGCATGTTAG+AGG 0.481598 1_3:-7580071 None:intergenic
TCTCGGTTGCCTTGCGCAAG+TGG 0.488530 1_3:-7579880 None:intergenic
AACAAATGAGGTTGCAACAT+AGG 0.496587 1_3:-7580145 None:intergenic
ATCTATGACCGTATCAACAT+TGG 0.506900 1_3:-7579708 None:intergenic
GCTGGAAATATTTGAGTTTG+CGG 0.509101 1_3:-7580106 None:intergenic
AGGTTTGAGTAGGAGCGCCC+TGG 0.514885 1_3:-7580021 None:intergenic
ACAGAGAGTGCAAAGCTCAC+TGG 0.525840 1_3:-7579624 None:intergenic
ACAAATGAGGTTGCAACATA+GGG 0.527904 1_3:-7580144 None:intergenic
TCTATGACCGTATCAACATT+GGG 0.542196 1_3:-7579707 None:intergenic
TGGCCAACCCAATGTTGATA+CGG 0.545005 1_3:+7579700 Msa0101090:CDS
CTTTCTCGAAGCGCCGTAGT+GGG 0.553366 1_3:+7579588 Msa0101090:CDS
TGTTTGGTTTCAACAATATG+GGG 0.556331 1_3:+7580164 Msa0101090:CDS
TTGTTGAAACCAAACAAATG+AGG 0.558095 1_3:-7580157 None:intergenic
GGAGGTGGATATGGACCCTC+CGG 0.560213 1_3:+7580190 Msa0101090:CDS
GCATCTTAAGGTCGATCTAA+GGG 0.562521 1_3:-7580229 None:intergenic
ACTTTCTCGAAGCGCCGTAG+TGG 0.571963 1_3:+7579587 Msa0101090:CDS
GCTCGCGCACGTTGGCACTA+CGG 0.576720 1_3:-7579790 None:intergenic
AATGAAAATACCTTCTCCCC+AGG 0.587583 1_3:-7579677 None:intergenic
GGCCATATTCATCCCATCAA+CGG 0.588307 1_3:-7579924 None:intergenic
AGCCCACCAAAATTGAGTCT+CGG 0.589062 1_3:-7579897 None:intergenic
AGAGCTGAGCCACTTGCGCA+AGG 0.589828 1_3:+7579871 Msa0101090:CDS
CTTCAACCATGTCAAGTGGA+AGG 0.599332 1_3:+7579501 None:intergenic
TGACCGTATCAACATTGGGT+TGG 0.600758 1_3:-7579703 None:intergenic
TGTGCTTCAACCATGTCAAG+TGG 0.601126 1_3:+7579497 None:intergenic
GTTTGGTTTCAACAATATGG+GGG 0.607401 1_3:+7580165 Msa0101090:CDS
CTTTCTTGAAGAGCCCACTA+CGG 0.610979 1_3:-7579601 None:intergenic
GGATTTGGTTGATGATCGAG+AGG 0.624852 1_3:-7580082 None:intergenic
GGAAATATTTGAGTTTGCGG+AGG 0.627262 1_3:-7580103 None:intergenic
AGTGAGCTTTGCACTCTCTG+TGG 0.635156 1_3:+7579626 Msa0101090:CDS
GCTAATAGACTTGTAATCCA+GGG 0.635406 1_3:+7580004 Msa0101090:CDS
TTTGGTTTCAACAATATGGG+GGG 0.638238 1_3:+7580166 Msa0101090:CDS
TGGTACCATGCAATTCATTG+AGG 0.638950 1_3:+7579763 Msa0101090:CDS
CGAGTCCCACCCCAAAACAA+TGG 0.639467 1_3:+7579743 Msa0101090:CDS
GTGAGCCTCAATGAATTGCA+TGG 0.640763 1_3:-7579768 None:intergenic
AATATTGAGCTCGCGCACGT+TGG 0.641144 1_3:-7579798 None:intergenic
TCAAGTGGAAGGAAAAGCCG+AGG 0.705721 1_3:+7579512 Msa0101090:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTCATCTCAATCTTT+TGG - chr1_3:7579541-7579560 None:intergenic 20.0%
!!! CTTTTTGAAAAATTCAAGTT+GGG - chr1_3:7579948-7579967 None:intergenic 20.0%
!!! CCTTTTTGAAAAATTCAAGT+TGG - chr1_3:7579949-7579968 None:intergenic 25.0%
!!! CCAACTTGAATTTTTCAAAA+AGG + chr1_3:7579946-7579965 Msa0101090:CDS 25.0%
!!! TGAATTTTTCAAAAAGGCTT+TGG + chr1_3:7579952-7579971 Msa0101090:CDS 25.0%
! ATTTCCAACAAAAAATGGAA+AGG - chr1_3:7580044-7580063 None:intergenic 25.0%
!!! TTTCCATTTTTTGTTGGAAA+TGG + chr1_3:7580043-7580062 Msa0101090:CDS 25.0%
!! TTTGTTTGGTTTCAACAATA+TGG + chr1_3:7580162-7580181 Msa0101090:CDS 25.0%
!! TTGTTTGGTTTCAACAATAT+GGG + chr1_3:7580163-7580182 Msa0101090:CDS 25.0%
!! ATTTTTCAAAAAGGCTTTGG+AGG + chr1_3:7579955-7579974 Msa0101090:CDS 30.0%
AAAAATGGAAAGGTTTGAGT+AGG - chr1_3:7580034-7580053 None:intergenic 30.0%
!!! CAAACCTTTCCATTTTTTGT+TGG + chr1_3:7580037-7580056 Msa0101090:CDS 30.0%
GAACCATTTCCAACAAAAAA+TGG - chr1_3:7580049-7580068 None:intergenic 30.0%
TTGTTGAAACCAAACAAATG+AGG - chr1_3:7580160-7580179 None:intergenic 30.0%
! TGTTTGGTTTCAACAATATG+GGG + chr1_3:7580164-7580183 Msa0101090:CDS 30.0%
TCTATGACCGTATCAACATT+GGG - chr1_3:7579710-7579729 None:intergenic 35.0%
ATCTATGACCGTATCAACAT+TGG - chr1_3:7579711-7579730 None:intergenic 35.0%
! TTGCATGGTACCATTGTTTT+GGG - chr1_3:7579756-7579775 None:intergenic 35.0%
! ATTGCATGGTACCATTGTTT+TGG - chr1_3:7579757-7579776 None:intergenic 35.0%
TGCTAATAGACTTGTAATCC+AGG + chr1_3:7580003-7580022 Msa0101090:CDS 35.0%
GCTAATAGACTTGTAATCCA+GGG + chr1_3:7580004-7580023 Msa0101090:CDS 35.0%
! GCTGGAAATATTTGAGTTTG+CGG - chr1_3:7580109-7580128 None:intergenic 35.0%
ACAAATGAGGTTGCAACATA+GGG - chr1_3:7580147-7580166 None:intergenic 35.0%
AACAAATGAGGTTGCAACAT+AGG - chr1_3:7580148-7580167 None:intergenic 35.0%
ATGTTGCAACCTCATTTGTT+TGG + chr1_3:7580148-7580167 Msa0101090:CDS 35.0%
! GTTTGGTTTCAACAATATGG+GGG + chr1_3:7580165-7580184 Msa0101090:CDS 35.0%
! TTTGGTTTCAACAATATGGG+GGG + chr1_3:7580166-7580185 Msa0101090:CDS 35.0%
TCAGATAAAAAGAATCCGGA+GGG - chr1_3:7580208-7580227 None:intergenic 35.0%
AATGAAAATACCTTCTCCCC+AGG - chr1_3:7579680-7579699 None:intergenic 40.0%
!!! GGGGAGAAGGTATTTTCATT+TGG + chr1_3:7579680-7579699 Msa0101090:CDS 40.0%
!! TGCATGGTACCATTGTTTTG+GGG - chr1_3:7579755-7579774 None:intergenic 40.0%
TGGTACCATGCAATTCATTG+AGG + chr1_3:7579763-7579782 Msa0101090:CDS 40.0%
TCTTCTCATTGTCCAATAGC+TGG - chr1_3:7579841-7579860 None:intergenic 40.0%
!! AACCGAGACTCAATTTTGGT+GGG + chr1_3:7579895-7579914 Msa0101090:CDS 40.0%
! TTCCGTTGATGGGATGAATA+TGG + chr1_3:7579922-7579941 Msa0101090:CDS 40.0%
! ATTTGAGTTTGCGGAGGATT+TGG - chr1_3:7580100-7580119 None:intergenic 40.0%
! GGAAATATTTGAGTTTGCGG+AGG - chr1_3:7580106-7580125 None:intergenic 40.0%
!! GGGTTCTGAAAAAATTGTGC+TGG - chr1_3:7580127-7580146 None:intergenic 40.0%
CTCAGATAAAAAGAATCCGG+AGG - chr1_3:7580209-7580228 None:intergenic 40.0%
GGGCTCAGATAAAAAGAATC+CGG - chr1_3:7580212-7580231 None:intergenic 40.0%
! TCTCAATCTTTTGGCGACCT+CGG - chr1_3:7579532-7579551 None:intergenic 45.0%
CTTTCTTGAAGAGCCCACTA+CGG - chr1_3:7579604-7579623 None:intergenic 45.0%
!! CTCTCGTTGTTTTCTCACCT+GGG + chr1_3:7579660-7579679 Msa0101090:CDS 45.0%
!! TCTCGTTGTTTTCTCACCTG+GGG + chr1_3:7579661-7579680 Msa0101090:CDS 45.0%
TGGCCAACCCAATGTTGATA+CGG + chr1_3:7579700-7579719 Msa0101090:CDS 45.0%
TGACCGTATCAACATTGGGT+TGG - chr1_3:7579706-7579725 None:intergenic 45.0%
!!! TGGTACCATTGTTTTGGGGT+GGG - chr1_3:7579751-7579770 None:intergenic 45.0%
!!! ATGGTACCATTGTTTTGGGG+TGG - chr1_3:7579752-7579771 None:intergenic 45.0%
GTGAGCCTCAATGAATTGCA+TGG - chr1_3:7579771-7579790 None:intergenic 45.0%
GACTCAGATCAACCAGCTAT+TGG + chr1_3:7579826-7579845 Msa0101090:CDS 45.0%
! AGGCAACCGAGACTCAATTT+TGG + chr1_3:7579891-7579910 Msa0101090:CDS 45.0%
! CAACCGAGACTCAATTTTGG+TGG + chr1_3:7579894-7579913 Msa0101090:CDS 45.0%
AGCCCACCAAAATTGAGTCT+CGG - chr1_3:7579900-7579919 None:intergenic 45.0%
GGCCATATTCATCCCATCAA+CGG - chr1_3:7579927-7579946 None:intergenic 45.0%
! ATGATCGAGAGGCATGTTAG+AGG - chr1_3:7580074-7580093 None:intergenic 45.0%
!! GGATTTGGTTGATGATCGAG+AGG - chr1_3:7580085-7580104 None:intergenic 45.0%
TCAAGTGGAAGGAAAAGCCG+AGG + chr1_3:7579512-7579531 Msa0101090:CDS 50.0%
GCTTCGAGAAAGTCACTTGC+AGG - chr1_3:7579580-7579599 None:intergenic 50.0%
! ACAGAGAGTGCAAAGCTCAC+TGG - chr1_3:7579627-7579646 None:intergenic 50.0%
AGTGAGCTTTGCACTCTCTG+TGG + chr1_3:7579626-7579645 Msa0101090:CDS 50.0%
!! GCTCTCGTTGTTTTCTCACC+TGG + chr1_3:7579659-7579678 Msa0101090:CDS 50.0%
! TGTTTTCTCACCTGGGGAGA+AGG + chr1_3:7579667-7579686 Msa0101090:CDS 50.0%
AATATTGAGCTCGCGCACGT+TGG - chr1_3:7579801-7579820 None:intergenic 50.0%
!! GAGACTCAATTTTGGTGGGC+TGG + chr1_3:7579899-7579918 Msa0101090:CDS 50.0%
GGTTTCAACAATATGGGGGG+AGG + chr1_3:7580169-7580188 Msa0101090:CDS 50.0%
TTCAACAATATGGGGGGAGG+AGG + chr1_3:7580172-7580191 Msa0101090:CDS 50.0%
!! ACTTTCTCGAAGCGCCGTAG+TGG + chr1_3:7579587-7579606 Msa0101090:CDS 55.0%
!! CTTTCTCGAAGCGCCGTAGT+GGG + chr1_3:7579588-7579607 Msa0101090:CDS 55.0%
CGAGTCCCACCCCAAAACAA+TGG + chr1_3:7579743-7579762 Msa0101090:CDS 55.0%
AACAATATGGGGGGAGGAGG+TGG + chr1_3:7580175-7580194 Msa0101090:CDS 55.0%
AGAGCTGAGCCACTTGCGCA+AGG + chr1_3:7579871-7579890 Msa0101090:CDS 60.0%
TCTCGGTTGCCTTGCGCAAG+TGG - chr1_3:7579883-7579902 None:intergenic 60.0%
!! TGGTGGGCTGGTTCCGTTGA+TGG + chr1_3:7579911-7579930 Msa0101090:CDS 60.0%
!! GGTGGGCTGGTTCCGTTGAT+GGG + chr1_3:7579912-7579931 Msa0101090:CDS 60.0%
!! AGGTTTGAGTAGGAGCGCCC+TGG - chr1_3:7580024-7580043 None:intergenic 60.0%
ATGGGGGGAGGAGGTGGATA+TGG + chr1_3:7580181-7580200 Msa0101090:CDS 60.0%
GGAGGTGGATATGGACCCTC+CGG + chr1_3:7580190-7580209 Msa0101090:CDS 60.0%
GCTCGCGCACGTTGGCACTA+CGG - chr1_3:7579793-7579812 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 7579509 7580246 7579509 ID=Msa0101090;Name=Msa0101090
chr1_3 mRNA 7579509 7580246 7579509 ID=Msa0101090-mRNA-1;Parent=Msa0101090;Name=Msa0101090-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|-1|0|1|-1|1|1|0|245
chr1_3 exon 7579509 7580246 7579509 ID=Msa0101090-mRNA-1:exon:2966;Parent=Msa0101090-mRNA-1
chr1_3 CDS 7579509 7580246 7579509 ID=Msa0101090-mRNA-1:cds;Parent=Msa0101090-mRNA-1
Gene Sequence

>Msa0101090

ATGTCAAGTGGAAGGAAAAGCCGAGGTCGCCAAAAGATTGAGATGAAAAAAATGAGCAACGAGAGCAACCTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCCAGTGAGCTTTGCACTCTCTGTGGTGCAGATGTTGCTCTCGTTGTTTTCTCACCTGGGGAGAAGGTATTTTCATTTGGCCAACCCAATGTTGATACGGTCATAGATCGTTATCTCTCTCGAGTCCCACCCCAAAACAATGGTACCATGCAATTCATTGAGGCTCACCGTAGTGCCAACGTGCGCGAGCTCAATATTCAGTTGACTCAGATCAACCAGCTATTGGACAATGAGAAGAAACGCGCTGAAGAGCTGAGCCACTTGCGCAAGGCAACCGAGACTCAATTTTGGTGGGCTGGTTCCGTTGATGGGATGAATATGGCCCAACTTGAATTTTTCAAAAAGGCTTTGGAGGAGATTAAGAAACTTGTTGCACATCATGCTAATAGACTTGTAATCCAGGGCGCTCCTACTCAAACCTTTCCATTTTTTGTTGGAAATGGTTCATCCTCTAACATGCCTCTCGATCATCAACCAAATCCTCCGCAAACTCAAATATTTCCAGCACAATTTTTTCAGAACCCTATGTTGCAACCTCATTTGTTTGGTTTCAACAATATGGGGGGAGGAGGTGGATATGGACCCTCCGGATTCTTTTTATCTGAGCCCTTAGATCGACCTTAA
Protein sequence

>Msa0101090

MSSGRKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGADVALVVFSPGEKVFSFGQPNVDTVIDRYLSRVPPQNNGTMQFIEAHRSANVRELNIQLTQINQLLDNEKKRAEELSHLRKATETQFWWAGSVDGMNMAQLEFFKKALEEIKKLVAHHANRLVIQGAPTQTFPFFVGNGSSSNMPLDHQPNPPQTQIFPAQFFQNPMLQPHLFGFNNMGGGGGYGPSGFFLSEPLDRP*