Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0101230 | G7I7I8 | 92.473 | 279 | 19 | 1 | 1 | 279 | 1 | 277 | 0.0 | 534 |
Gene ID | Type | Classification |
---|---|---|
Msa0101230 | TF | FAR1 |
Gene ID | Type | Classification |
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Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
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PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0101230 | MtrunA17_Chr1g0149501 | 92.473 | 279 | 19 | 1 | 1 | 279 | 1 | 277 | 0.0 | 534 |
Msa0101230 | MtrunA17_Chr6g0461511 | 41.243 | 177 | 94 | 3 | 30 | 196 | 374 | 550 | 9.81e-35 | 131 |
Msa0101230 | MtrunA17_Chr1g0182981 | 53.521 | 71 | 30 | 1 | 23 | 90 | 1 | 71 | 2.22e-16 | 72.0 |
Msa0101230 | MtrunA17_Chr4g0055251 | 37.805 | 82 | 51 | 0 | 123 | 204 | 3 | 84 | 4.48e-11 | 60.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Find 80 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCAACCAACACTTCAGATTT+TGG | 0.127175 | 1_3:+7800220 | None:intergenic |
GCCAGAGTTGGAAGCGATTC+AGG | 0.243223 | 1_3:-7800152 | Msa0101230:intron |
TTTGGTGGAAAAGGAAATAT+TGG | 0.249350 | 1_3:-7799857 | Msa0101230:three_prime_UTR |
GAAATATTGGAAACGAGTTT+TGG | 0.251028 | 1_3:-7799844 | Msa0101230:three_prime_UTR |
CAGAGAAGGAGAAGGAAAAT+TGG | 0.276242 | 1_3:-7799929 | Msa0101230:CDS |
CGAGGTGAAGCAGCCAAGTT+AGG | 0.314453 | 1_3:-7800646 | Msa0101230:CDS |
ACAACTTGAAATGACAGTTT+AGG | 0.346802 | 1_3:-7799785 | Msa0101230:three_prime_UTR |
TCATTTAAACGGCCTGCAAT+AGG | 0.361423 | 1_3:+7800394 | None:intergenic |
CAACTTGAAATGACAGTTTA+GGG | 0.372528 | 1_3:-7799784 | Msa0101230:three_prime_UTR |
AACTGAATCAAGAGAGGAAA+AGG | 0.372544 | 1_3:+7803131 | None:intergenic |
TTAGAAGAACAGCCTATTGC+AGG | 0.373206 | 1_3:-7800406 | Msa0101230:CDS |
TCTGGCAAAATAGATATATC+TGG | 0.373242 | 1_3:+7800169 | None:intergenic |
TCGATTACGAAATTCTTTAT+CGG | 0.375032 | 1_3:+7800690 | None:intergenic |
TGAGTGTCCATTCAGATTGC+GGG | 0.385405 | 1_3:-7800503 | Msa0101230:CDS |
ATATCTGGTTGATCTTCCTT+TGG | 0.393013 | 1_3:+7800184 | None:intergenic |
TCATCTCTTCCTCATTTAAA+CGG | 0.399399 | 1_3:+7800383 | None:intergenic |
TCGACTGGTTCAGCACTGTT+AGG | 0.410500 | 1_3:+7800745 | None:intergenic |
ACCTGAATCGCTTCCAACTC+TGG | 0.412695 | 1_3:+7800151 | None:intergenic |
GACATGGCGCCATCGTTTCT+AGG | 0.419057 | 1_3:+7799958 | None:intergenic |
GAAATATGATGTATTGGAAT+TGG | 0.431428 | 1_3:-7799882 | Msa0101230:exon |
TTTCTCCGTCAACCCTTGTC+AGG | 0.435693 | 1_3:-7803008 | Msa0101230:intron |
AACAATACCAAACCCTAACT+TGG | 0.442441 | 1_3:+7800633 | None:intergenic |
ACTTGTGAAATATGATGTAT+TGG | 0.446517 | 1_3:-7799888 | Msa0101230:exon |
GGGAGTTTGGGATTGAGAAA+TGG | 0.447404 | 1_3:-7799823 | Msa0101230:three_prime_UTR |
GAAGCAGCCAAGTTAGGGTT+TGG | 0.454402 | 1_3:-7800640 | Msa0101230:CDS |
GGTATGGAGGATCCCTCTGC+TGG | 0.464129 | 1_3:-7800775 | Msa0101230:CDS |
TCCTTCTCTGCAGGAGGACA+TGG | 0.465704 | 1_3:+7799942 | None:intergenic |
CTCTTATACTTGAATGCAAA+AGG | 0.466270 | 1_3:-7800579 | Msa0101230:CDS |
ATTTCAAAGTCAAATAATAG+AGG | 0.466691 | 1_3:-7800610 | Msa0101230:CDS |
AAGAAAAGAAGAGCTGATGA+TGG | 0.472982 | 1_3:-7800301 | Msa0101230:CDS |
TCCTTCTCCTTCTCTGCAGG+AGG | 0.477318 | 1_3:+7799936 | None:intergenic |
AGAGAAGGAGAAGGAAAATT+GGG | 0.484008 | 1_3:-7799928 | Msa0101230:CDS |
AAATAACCCCGCAATCTGAA+TGG | 0.485974 | 1_3:+7800496 | None:intergenic |
CCGTCAGTAGAACGAGGATT+GGG | 0.497265 | 1_3:+7803091 | None:intergenic |
GAGGTATAACAAGTCTATGA+AGG | 0.500697 | 1_3:-7800245 | Msa0101230:CDS |
GAACGAGGATTGGGTGCGAT+AGG | 0.507709 | 1_3:+7803100 | None:intergenic |
CACCTCGAACCCACTTCAGC+AGG | 0.515291 | 1_3:+7800662 | None:intergenic |
AAAACACAATCATGAGATGA+TGG | 0.519225 | 1_3:-7800434 | Msa0101230:CDS |
GAGGTGAAGCAGCCAAGTTA+GGG | 0.528533 | 1_3:-7800645 | Msa0101230:CDS |
AGATTTATAATGCACGTTCG+AGG | 0.531682 | 1_3:-7800264 | Msa0101230:CDS |
CTGAATCAAGAGAGGAAAAG+GGG | 0.535257 | 1_3:+7803133 | None:intergenic |
TATTGCAGGCCGTTTAAATG+AGG | 0.536027 | 1_3:-7800392 | Msa0101230:CDS |
ACTGAATCAAGAGAGGAAAA+GGG | 0.537605 | 1_3:+7803132 | None:intergenic |
GCCATGTCCTCCTGCAGAGA+AGG | 0.538358 | 1_3:-7799943 | Msa0101230:CDS |
ATTTACCTGACAAGGGTTGA+CGG | 0.539125 | 1_3:+7803003 | None:intergenic |
GCCGTCAGTAGAACGAGGAT+TGG | 0.540495 | 1_3:+7803090 | None:intergenic |
TAGTGAATATTTACCTGACA+AGG | 0.545419 | 1_3:+7802995 | None:intergenic |
ATCGAGATGACCTGCTGAAG+TGG | 0.550843 | 1_3:-7800672 | Msa0101230:CDS |
AACGAGGATTGGGTGCGATA+GGG | 0.554312 | 1_3:+7803101 | None:intergenic |
ATTACGAAATTCTTTATCGG+TGG | 0.564422 | 1_3:+7800693 | None:intergenic |
AGAAAAGAAGAGCTGATGAT+GGG | 0.564911 | 1_3:-7800300 | Msa0101230:CDS |
TGGGAAGTTACCGTAGTATG+TGG | 0.565876 | 1_3:-7800457 | Msa0101230:CDS |
GACCTGCTGAAGTGGGTTCG+AGG | 0.578355 | 1_3:-7800664 | Msa0101230:CDS |
GTGAGTGTCCATTCAGATTG+CGG | 0.585943 | 1_3:-7800504 | Msa0101230:CDS |
ACTGACGGCACACGCGACGC+AGG | 0.590505 | 1_3:-7803076 | Msa0101230:five_prime_UTR |
AAATCAAGAGACTCATCGAC+TGG | 0.594128 | 1_3:+7800730 | None:intergenic |
GACGGCACACGCGACGCAGG+AGG | 0.614725 | 1_3:-7803073 | Msa0101230:five_prime_UTR |
AGGTATAACAAGTCTATGAA+GGG | 0.614739 | 1_3:-7800244 | Msa0101230:CDS |
ACTTGAAATGACAGTTTAGG+GGG | 0.618569 | 1_3:-7799782 | Msa0101230:three_prime_UTR |
GGTAACTTCCCATACGCCAG+AGG | 0.621236 | 1_3:+7800468 | None:intergenic |
TGATGATGACGGTGTGCCAA+AGG | 0.622138 | 1_3:-7800200 | Msa0101230:CDS |
TGATACCATTTCAGGTATGG+AGG | 0.622154 | 1_3:-7800788 | Msa0101230:intron |
TCCTCCTGCAGAGAAGGAGA+AGG | 0.625108 | 1_3:-7799937 | Msa0101230:CDS |
AACGTTATCTGTGACTATGA+CGG | 0.626961 | 1_3:-7803045 | Msa0101230:exon |
TCGAGATGACCTGCTGAAGT+GGG | 0.628333 | 1_3:-7800671 | Msa0101230:CDS |
TTAGGCTTCAAACCAGCAGA+GGG | 0.633057 | 1_3:+7800763 | None:intergenic |
GGGTCCAAAATCTGAAGTGT+TGG | 0.635922 | 1_3:-7800224 | Msa0101230:CDS |
ATACTTGAATGCAAAAGGAG+TGG | 0.641681 | 1_3:-7800574 | Msa0101230:CDS |
AATAGCTTTCCTAGAAACGA+TGG | 0.645047 | 1_3:-7799967 | Msa0101230:CDS |
GTAACTTCCCATACGCCAGA+GGG | 0.653240 | 1_3:+7800469 | None:intergenic |
TCACTTAACTGAATCAAGAG+AGG | 0.653779 | 1_3:+7803125 | None:intergenic |
AGTGAATATTTACCTGACAA+GGG | 0.658458 | 1_3:+7802996 | None:intergenic |
GAGTGTCCATTCAGATTGCG+GGG | 0.660517 | 1_3:-7800502 | Msa0101230:CDS |
CCCAATCCTCGTTCTACTGA+CGG | 0.665393 | 1_3:-7803091 | Msa0101230:five_prime_UTR |
AACTTGAAATGACAGTTTAG+GGG | 0.666557 | 1_3:-7799783 | Msa0101230:three_prime_UTR |
GTTAGGCTTCAAACCAGCAG+AGG | 0.669794 | 1_3:+7800762 | None:intergenic |
TGAATCAAGAGAGGAAAAGG+GGG | 0.675462 | 1_3:+7803134 | None:intergenic |
CGTGTGCCGTCAGTAGAACG+AGG | 0.695306 | 1_3:+7803085 | None:intergenic |
GAAGTGTTGGTTGATGATGA+CGG | 0.720616 | 1_3:-7800211 | Msa0101230:CDS |
GAATCAAGAGAGGAAAAGGG+GGG | 0.729689 | 1_3:+7803135 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTTTATAGAATTTTAAAAC+AGG | - | chr1_3:7801320-7801339 | Msa0101230:intron | 10.0% |
!!! | TTTTTTTTAATTTTCAGATT+CGG | - | chr1_3:7802798-7802817 | Msa0101230:intron | 10.0% |
!!! | AAAGTTACTTAATTTTATAT+AGG | - | chr1_3:7803139-7803158 | Msa0101230:five_prime_UTR | 10.0% |
!! | AAATTGAAAAGTAATTACAT+TGG | + | chr1_3:7800061-7800080 | None:intergenic | 15.0% |
!!! | AATTTTGAAAATATTTCAAG+AGG | - | chr1_3:7800115-7800134 | Msa0101230:intron | 15.0% |
!!! | TTTTTTATTATCAAGTTTGT+AGG | - | chr1_3:7800639-7800658 | Msa0101230:CDS | 15.0% |
!!! | TTTATAAGACAATAACATTT+TGG | - | chr1_3:7800845-7800864 | Msa0101230:intron | 15.0% |
!!! | TTATAAGACAATAACATTTT+GGG | - | chr1_3:7800846-7800865 | Msa0101230:intron | 15.0% |
!!! | GTATTTTTATTCTAAGTATT+TGG | - | chr1_3:7801158-7801177 | Msa0101230:intron | 15.0% |
!! | TTAATAGGCAAATTAAAATT+TGG | + | chr1_3:7801447-7801466 | None:intergenic | 15.0% |
!! | AAATTGTGCAATATAATTAA+TGG | + | chr1_3:7801857-7801876 | None:intergenic | 15.0% |
!!! | CAATCTTTTCATTTTAAAAA+GGG | - | chr1_3:7801971-7801990 | Msa0101230:intron | 15.0% |
!!! | AAAGTCATAAGAATATTTTT+TGG | + | chr1_3:7802519-7802538 | None:intergenic | 15.0% |
!! | AAAAACTTAAATCCCTAAAA+CGG | - | chr1_3:7799901-7799920 | Msa0101230:CDS | 20.0% |
!!! | TTTTTCTAGATCTAAATGTT+AGG | - | chr1_3:7800003-7800022 | Msa0101230:CDS | 20.0% |
!!! | TTTTCTAGATCTAAATGTTA+GGG | - | chr1_3:7800004-7800023 | Msa0101230:CDS | 20.0% |
!!! | GTTTTTATTATCAAGTTTGT+TGG | - | chr1_3:7800526-7800545 | Msa0101230:CDS | 20.0% |
!!! | TCTGGTAAATTATTTAGTTT+TGG | - | chr1_3:7800902-7800921 | Msa0101230:intron | 20.0% |
!!! | TATTTTTACTGTTTCATCAT+CGG | - | chr1_3:7801225-7801244 | Msa0101230:intron | 20.0% |
!!! | TCATTTTTACAAATGCAAAA+TGG | - | chr1_3:7801252-7801271 | Msa0101230:intron | 20.0% |
!!! | CATTTTTACAAATGCAAAAT+GGG | - | chr1_3:7801253-7801272 | Msa0101230:intron | 20.0% |
!!! | CTTTGTAATTTTATAAATGC+AGG | - | chr1_3:7801281-7801300 | Msa0101230:intron | 20.0% |
!!! | TTTAGTGAATTTTCTCAATT+GGG | - | chr1_3:7801496-7801515 | Msa0101230:intron | 20.0% |
!! | AAAGTTAATTACAAGTCATA+CGG | + | chr1_3:7801656-7801675 | None:intergenic | 20.0% |
!! | ATTAACTTTGTAGTTATAAC+AGG | - | chr1_3:7801667-7801686 | Msa0101230:intron | 20.0% |
!! | TAACATAAACACTCAAAATT+TGG | + | chr1_3:7801701-7801720 | None:intergenic | 20.0% |
!!! | ACACACATTTTGTAAAATAA+GGG | + | chr1_3:7801813-7801832 | None:intergenic | 20.0% |
!!! | AACACACATTTTGTAAAATA+AGG | + | chr1_3:7801814-7801833 | None:intergenic | 20.0% |
!!! | CAATATAATTAATGGATGAT+AGG | + | chr1_3:7801849-7801868 | None:intergenic | 20.0% |
!!! | CCTTTTTAAAATGAAAAGAT+TGG | + | chr1_3:7801973-7801992 | None:intergenic | 20.0% |
!!! | CCAATCTTTTCATTTTAAAA+AGG | - | chr1_3:7801970-7801989 | Msa0101230:intron | 20.0% |
!! | ATTTCAAAGTCAAATAATAG+AGG | - | chr1_3:7802231-7802250 | Msa0101230:intron | 20.0% |
!!! | TCATAAGAATATTTTTTGGA+CGG | + | chr1_3:7802515-7802534 | None:intergenic | 20.0% |
!!! | AAAATTTGTTTCATCTAGAA+GGG | + | chr1_3:7802763-7802782 | None:intergenic | 20.0% |
!!! | TTTAAGTTTTTACAGAGACA+CGG | + | chr1_3:7799892-7799911 | None:intergenic | 25.0% |
!!! | TTGTTTTATTTCCGCAAATT+TGG | - | chr1_3:7800345-7800364 | Msa0101230:CDS | 25.0% |
! | AAATCTTAACACCAAATTTG+CGG | + | chr1_3:7800359-7800378 | None:intergenic | 25.0% |
!! | AAAACTCAAGGGTAAAATTT+TGG | - | chr1_3:7800387-7800406 | Msa0101230:CDS | 25.0% |
!! | AAACTCAAGGGTAAAATTTT+GGG | - | chr1_3:7800388-7800407 | Msa0101230:CDS | 25.0% |
! | AATTAAACCCAAAAACACAT+TGG | - | chr1_3:7800752-7800771 | Msa0101230:CDS | 25.0% |
! | TATGATCCTTGTGTTATATT+TGG | - | chr1_3:7800785-7800804 | Msa0101230:intron | 25.0% |
! | CTTGAAACAAATCAACAAAT+TGG | - | chr1_3:7800994-7801013 | Msa0101230:intron | 25.0% |
! | TAAAAATACAGTGTTCAATG+TGG | + | chr1_3:7801147-7801166 | None:intergenic | 25.0% |
!! | ACTATGCATTTTTATAAGTG+TGG | - | chr1_3:7801186-7801205 | Msa0101230:intron | 25.0% |
!! | GTTTAGTGAATTTTCTCAAT+TGG | - | chr1_3:7801495-7801514 | Msa0101230:intron | 25.0% |
!!! | GTTTTGTTTTTACGTATTAC+TGG | - | chr1_3:7801932-7801951 | Msa0101230:intron | 25.0% |
! | ATCATGTTCATGAGAAAAAT+AGG | + | chr1_3:7802037-7802056 | None:intergenic | 25.0% |
! | TCGATTACGAAATTCTTTAT+CGG | + | chr1_3:7802154-7802173 | None:intergenic | 25.0% |
!!! | ATTTTTTGAATCTTGTGTCT+TGG | + | chr1_3:7802317-7802336 | None:intergenic | 25.0% |
! | ATTCAATAGTAATTCTGTTC+TGG | - | chr1_3:7802716-7802735 | Msa0101230:intron | 25.0% |
!! | GAAAATTTGTTTCATCTAGA+AGG | + | chr1_3:7802764-7802783 | None:intergenic | 25.0% |
! | ACTTGTGAAATATGATGTAT+TGG | - | chr1_3:7802953-7802972 | Msa0101230:intron | 25.0% |
! | GAAATATGATGTATTGGAAT+TGG | - | chr1_3:7802959-7802978 | Msa0101230:intron | 25.0% |
!! | AAATATTGGAAACGAGTTTT+GGG | - | chr1_3:7802998-7803017 | Msa0101230:intron | 25.0% |
AGTGAATATTTACCTGACAA+GGG | + | chr1_3:7799848-7799867 | None:intergenic | 30.0% | |
TAGTGAATATTTACCTGACA+AGG | + | chr1_3:7799849-7799868 | None:intergenic | 30.0% | |
! | TTAAGTTTTTACAGAGACAC+GGG | + | chr1_3:7799891-7799910 | None:intergenic | 30.0% |
ATTGAATGTAATTGTCGTTG+TGG | - | chr1_3:7800219-7800238 | Msa0101230:CDS | 30.0% | |
ATTTGCAATTGCAAAACTCA+AGG | - | chr1_3:7800375-7800394 | Msa0101230:CDS | 30.0% | |
TTTGCAATTGCAAAACTCAA+GGG | - | chr1_3:7800376-7800395 | Msa0101230:CDS | 30.0% | |
! | AAAAACCTTACCTTTTGCTA+GGG | + | chr1_3:7800455-7800474 | None:intergenic | 30.0% |
! | AAAAAACCTTACCTTTTGCT+AGG | + | chr1_3:7800456-7800475 | None:intergenic | 30.0% |
GATGAATATTGACAGAATGT+AGG | - | chr1_3:7800548-7800567 | Msa0101230:CDS | 30.0% | |
CAAGTTTGTAGGATGAATAT+TGG | - | chr1_3:7800650-7800669 | Msa0101230:CDS | 30.0% | |
! | TTCTGAACCAATGTGTTTTT+GGG | + | chr1_3:7800762-7800781 | None:intergenic | 30.0% |
! | ATTCTGAACCAATGTGTTTT+TGG | + | chr1_3:7800763-7800782 | None:intergenic | 30.0% |
GTACAACCAAATATAACACA+AGG | + | chr1_3:7800794-7800813 | None:intergenic | 30.0% | |
CAAGGAAATTAAGAATGTTC+TGG | - | chr1_3:7800884-7800903 | Msa0101230:intron | 30.0% | |
TCAAATATCACCAGTAACTT+TGG | - | chr1_3:7801119-7801138 | Msa0101230:intron | 30.0% | |
TAGTGACAAAATAGCACTAT+CGG | + | chr1_3:7801361-7801380 | None:intergenic | 30.0% | |
! | TTTTCGTGAATGCTGTTAAT+AGG | + | chr1_3:7801462-7801481 | None:intergenic | 30.0% |
ATACGTAACTTCTTTCAGTA+TGG | - | chr1_3:7801539-7801558 | Msa0101230:intron | 30.0% | |
TCAAGTATGTCAATTGATGT+TGG | - | chr1_3:7801587-7801606 | Msa0101230:intron | 30.0% | |
! | TTTGAGTTTATGTCAAACAC+TGG | - | chr1_3:7801723-7801742 | Msa0101230:intron | 30.0% |
TAAATGAGAGTTGAAGATGA+CGG | + | chr1_3:7801772-7801791 | None:intergenic | 30.0% | |
ACGCAAAAGAAACAATTAGA+AGG | + | chr1_3:7801914-7801933 | None:intergenic | 30.0% | |
!! | ATTTTAAAAAGGGTCCAGAT+GGG | - | chr1_3:7801981-7802000 | Msa0101230:intron | 30.0% |
ATTACGAAATTCTTTATCGG+TGG | + | chr1_3:7802151-7802170 | None:intergenic | 30.0% | |
CTCTTATACTTGAATGCAAA+AGG | - | chr1_3:7802262-7802281 | Msa0101230:intron | 30.0% | |
! | ATTGTGTTTTCCACATACTA+CGG | + | chr1_3:7802397-7802416 | None:intergenic | 30.0% |
AAAACACAATCATGAGATGA+TGG | - | chr1_3:7802407-7802426 | Msa0101230:intron | 30.0% | |
TCATCTCTTCCTCATTTAAA+CGG | + | chr1_3:7802461-7802480 | None:intergenic | 30.0% | |
AGGTATAACAAGTCTATGAA+GGG | - | chr1_3:7802597-7802616 | Msa0101230:intron | 30.0% | |
TCTGGCAAAATAGATATATC+TGG | + | chr1_3:7802675-7802694 | None:intergenic | 30.0% | |
! | TATATCTATTTTGCCAGAGT+TGG | - | chr1_3:7802677-7802696 | Msa0101230:intron | 30.0% |
!!! | GATGTATTGGAATTGGTTTT+TGG | - | chr1_3:7802966-7802985 | Msa0101230:intron | 30.0% |
TTTGGTGGAAAAGGAAATAT+TGG | - | chr1_3:7802984-7803003 | Msa0101230:intron | 30.0% | |
! | GAAATATTGGAAACGAGTTT+TGG | - | chr1_3:7802997-7803016 | Msa0101230:intron | 30.0% |
ACAACTTGAAATGACAGTTT+AGG | - | chr1_3:7803056-7803075 | Msa0101230:five_prime_UTR | 30.0% | |
CAACTTGAAATGACAGTTTA+GGG | - | chr1_3:7803057-7803076 | Msa0101230:five_prime_UTR | 30.0% | |
AACTTGAAATGACAGTTTAG+GGG | - | chr1_3:7803058-7803077 | Msa0101230:five_prime_UTR | 30.0% | |
ACTGAATCAAGAGAGGAAAA+GGG | + | chr1_3:7799712-7799731 | None:intergenic | 35.0% | |
AACTGAATCAAGAGAGGAAA+AGG | + | chr1_3:7799713-7799732 | None:intergenic | 35.0% | |
TCACTTAACTGAATCAAGAG+AGG | + | chr1_3:7799719-7799738 | None:intergenic | 35.0% | |
AACGTTATCTGTGACTATGA+CGG | - | chr1_3:7799796-7799815 | Msa0101230:three_prime_UTR | 35.0% | |
! | TGTGAAACGAAACCGTTTTA+GGG | + | chr1_3:7799916-7799935 | None:intergenic | 35.0% |
! | ATGTGAAACGAAACCGTTTT+AGG | + | chr1_3:7799917-7799936 | None:intergenic | 35.0% |
!!! | CCTTGTTTGTTTTTTCTTGC+CGG | - | chr1_3:7799946-7799965 | Msa0101230:CDS | 35.0% |
TATTGACAGAATGTAGGTTC+TGG | - | chr1_3:7800554-7800573 | Msa0101230:CDS | 35.0% | |
! | TATTGGAAGAGTGTAGATTG+TGG | - | chr1_3:7800667-7800686 | Msa0101230:CDS | 35.0% |
!!! | ACATTTTGGGTTCGTGAATT+TGG | - | chr1_3:7800859-7800878 | Msa0101230:intron | 35.0% |
!! | TCTGATCGATCCTCTTATTT+TGG | - | chr1_3:7800927-7800946 | Msa0101230:intron | 35.0% |
AACTCCTATGCCAAAATAAG+AGG | + | chr1_3:7800940-7800959 | None:intergenic | 35.0% | |
!! | TAACTGCAATCAGCTTGTTA+AGG | - | chr1_3:7801018-7801037 | Msa0101230:intron | 35.0% |
AGTGACAAAATAGCACTATC+GGG | + | chr1_3:7801360-7801379 | None:intergenic | 35.0% | |
CTGAAAGAAGTTACGTATCA+AGG | + | chr1_3:7801537-7801556 | None:intergenic | 35.0% | |
TGGTCTATTAGTAAACCTTC+CGG | - | chr1_3:7801607-7801626 | Msa0101230:intron | 35.0% | |
TATTAGTAAACCTTCCGGTT+GGG | - | chr1_3:7801612-7801631 | Msa0101230:intron | 35.0% | |
AAATGAGAGTTGAAGATGAC+GGG | + | chr1_3:7801771-7801790 | None:intergenic | 35.0% | |
!! | CATTTTAAAAAGGGTCCAGA+TGG | - | chr1_3:7801980-7801999 | Msa0101230:intron | 35.0% |
AGTAAGTACACATTCTGAGT+TGG | + | chr1_3:7802007-7802026 | None:intergenic | 35.0% | |
CATGAACATGATACCATTTC+AGG | - | chr1_3:7802045-7802064 | Msa0101230:intron | 35.0% | |
! | ACATGATACCATTTCAGGTA+TGG | - | chr1_3:7802050-7802069 | Msa0101230:intron | 35.0% |
AACAATACCAAACCCTAACT+TGG | + | chr1_3:7802211-7802230 | None:intergenic | 35.0% | |
ATACTTGAATGCAAAAGGAG+TGG | - | chr1_3:7802267-7802286 | Msa0101230:intron | 35.0% | |
AAGAAAAGAAGAGCTGATGA+TGG | - | chr1_3:7802540-7802559 | Msa0101230:intron | 35.0% | |
AGAAAAGAAGAGCTGATGAT+GGG | - | chr1_3:7802541-7802560 | Msa0101230:intron | 35.0% | |
AGATTTATAATGCACGTTCG+AGG | - | chr1_3:7802577-7802596 | Msa0101230:intron | 35.0% | |
GAGGTATAACAAGTCTATGA+AGG | - | chr1_3:7802596-7802615 | Msa0101230:intron | 35.0% | |
! | TCAACCAACACTTCAGATTT+TGG | + | chr1_3:7802624-7802643 | None:intergenic | 35.0% |
ATATCTGGTTGATCTTCCTT+TGG | + | chr1_3:7802660-7802679 | None:intergenic | 35.0% | |
AATAGCTTTCCTAGAAACGA+TGG | - | chr1_3:7802874-7802893 | Msa0101230:intron | 35.0% | |
AGAGAAGGAGAAGGAAAATT+GGG | - | chr1_3:7802913-7802932 | Msa0101230:intron | 35.0% | |
!!! | GTATTGGAATTGGTTTTTGG+TGG | - | chr1_3:7802969-7802988 | Msa0101230:intron | 35.0% |
!!! | GAATTGGTTTTTGGTGGAAA+AGG | - | chr1_3:7802975-7802994 | Msa0101230:intron | 35.0% |
ACTTGAAATGACAGTTTAGG+GGG | - | chr1_3:7803059-7803078 | Msa0101230:five_prime_UTR | 35.0% | |
TGAATCAAGAGAGGAAAAGG+GGG | + | chr1_3:7799710-7799729 | None:intergenic | 40.0% | |
CTGAATCAAGAGAGGAAAAG+GGG | + | chr1_3:7799711-7799730 | None:intergenic | 40.0% | |
ATTTACCTGACAAGGGTTGA+CGG | + | chr1_3:7799841-7799860 | None:intergenic | 40.0% | |
CCGGCAAGAAAAAACAAACA+AGG | + | chr1_3:7799949-7799968 | None:intergenic | 40.0% | |
!!! | TGTTTGTTTTTTCTTGCCGG+TGG | - | chr1_3:7799949-7799968 | Msa0101230:CDS | 40.0% |
TGTAATTGTCGTTGTGGTGT+TGG | - | chr1_3:7800225-7800244 | Msa0101230:CDS | 40.0% | |
AAACGACACATATGCAGGAA+GGG | + | chr1_3:7800422-7800441 | None:intergenic | 40.0% | |
CAAAGAAACGACACATATGC+AGG | + | chr1_3:7800427-7800446 | None:intergenic | 40.0% | |
CTTTGTTCTACCCTAGCAAA+AGG | - | chr1_3:7800442-7800461 | Msa0101230:CDS | 40.0% | |
TTCTACCCTAGCAAAAGGTA+AGG | - | chr1_3:7800447-7800466 | Msa0101230:CDS | 40.0% | |
!!! | CGATCCTCTTATTTTGGCAT+AGG | - | chr1_3:7800933-7800952 | Msa0101230:intron | 40.0% |
ATATTTGATCAGCGCGTTCA+TGG | + | chr1_3:7801107-7801126 | None:intergenic | 40.0% | |
CTATTAGTAAACCTTCCGGT+TGG | - | chr1_3:7801611-7801630 | Msa0101230:intron | 40.0% | |
! | TGATACCATTTCAGGTATGG+AGG | - | chr1_3:7802053-7802072 | Msa0101230:intron | 40.0% |
AAATCAAGAGACTCATCGAC+TGG | + | chr1_3:7802114-7802133 | None:intergenic | 40.0% | |
AAATAACCCCGCAATCTGAA+TGG | + | chr1_3:7802348-7802367 | None:intergenic | 40.0% | |
TTAGAAGAACAGCCTATTGC+AGG | - | chr1_3:7802435-7802454 | Msa0101230:intron | 40.0% | |
TCATTTAAACGGCCTGCAAT+AGG | + | chr1_3:7802450-7802469 | None:intergenic | 40.0% | |
TATTGCAGGCCGTTTAAATG+AGG | - | chr1_3:7802449-7802468 | Msa0101230:intron | 40.0% | |
!! | GAAGTGTTGGTTGATGATGA+CGG | - | chr1_3:7802630-7802649 | Msa0101230:intron | 40.0% |
GGTATTTCACACATCCGAAT+TGG | - | chr1_3:7802737-7802756 | Msa0101230:intron | 40.0% | |
TTCATCTAGAAGGGCCAATT+CGG | + | chr1_3:7802754-7802773 | None:intergenic | 40.0% | |
CAGAGAAGGAGAAGGAAAAT+TGG | - | chr1_3:7802912-7802931 | Msa0101230:intron | 40.0% | |
!!! | GAAACGAGTTTTGGGAGTTT+GGG | - | chr1_3:7803006-7803025 | Msa0101230:intron | 40.0% |
GAATCAAGAGAGGAAAAGGG+GGG | + | chr1_3:7799709-7799728 | None:intergenic | 45.0% | |
TGTCAGTGTCGTGTAGTGTT+CGG | + | chr1_3:7800164-7800183 | None:intergenic | 45.0% | |
! | TTCTGATGGAAGGGCATGTT+CGG | + | chr1_3:7800254-7800273 | None:intergenic | 45.0% |
GAAACGACACATATGCAGGA+AGG | + | chr1_3:7800423-7800442 | None:intergenic | 45.0% | |
! | GGGTTCGTGAATTTGGTTCA+AGG | - | chr1_3:7800866-7800885 | Msa0101230:intron | 45.0% |
TTGCATTGCCTGAACAGCTA+GGG | - | chr1_3:7801058-7801077 | Msa0101230:intron | 45.0% | |
! | TGTCATTTCCCTAGCTGTTC+AGG | + | chr1_3:7801069-7801088 | None:intergenic | 45.0% |
CAATGTGGCTCCAAAGTTAC+TGG | + | chr1_3:7801132-7801151 | None:intergenic | 45.0% | |
!!! | TACGGCATCGACTTTTCAAC+AGG | + | chr1_3:7801638-7801657 | None:intergenic | 45.0% |
TTAGGCTTCAAACCAGCAGA+GGG | + | chr1_3:7802081-7802100 | None:intergenic | 45.0% | |
GTGAGTGTCCATTCAGATTG+CGG | - | chr1_3:7802337-7802356 | Msa0101230:intron | 45.0% | |
TGAGTGTCCATTCAGATTGC+GGG | - | chr1_3:7802338-7802357 | Msa0101230:intron | 45.0% | |
!!! | ATTTTTTGCCCTCTGGCGTA+TGG | - | chr1_3:7802364-7802383 | Msa0101230:intron | 45.0% |
!!! | TTTTTTGCCCTCTGGCGTAT+GGG | - | chr1_3:7802365-7802384 | Msa0101230:intron | 45.0% |
TGGGAAGTTACCGTAGTATG+TGG | - | chr1_3:7802384-7802403 | Msa0101230:intron | 45.0% | |
! | GGGTCCAAAATCTGAAGTGT+TGG | - | chr1_3:7802617-7802636 | Msa0101230:intron | 45.0% |
! | TTTTCCTTCTCCTTCTCTGC+AGG | + | chr1_3:7802911-7802930 | None:intergenic | 45.0% |
!!! | GGAAACGAGTTTTGGGAGTT+TGG | - | chr1_3:7803005-7803024 | Msa0101230:intron | 45.0% |
! | GGGAGTTTGGGATTGAGAAA+TGG | - | chr1_3:7803018-7803037 | Msa0101230:CDS | 45.0% |
AACGAGGATTGGGTGCGATA+GGG | + | chr1_3:7799743-7799762 | None:intergenic | 50.0% | |
CCGTCAGTAGAACGAGGATT+GGG | + | chr1_3:7799753-7799772 | None:intergenic | 50.0% | |
CCCAATCCTCGTTCTACTGA+CGG | - | chr1_3:7799750-7799769 | Msa0101230:three_prime_UTR | 50.0% | |
TTTCTCCGTCAACCCTTGTC+AGG | - | chr1_3:7799833-7799852 | Msa0101230:three_prime_UTR | 50.0% | |
TACAGAGACACGGGAGAGAA+GGG | + | chr1_3:7799882-7799901 | None:intergenic | 50.0% | |
TTACAGAGACACGGGAGAGA+AGG | + | chr1_3:7799883-7799902 | None:intergenic | 50.0% | |
ACCCTAACAGCTTCTTCCAC+CGG | + | chr1_3:7799968-7799987 | None:intergenic | 50.0% | |
CACGGACACTTCTGATGGAA+GGG | + | chr1_3:7800263-7800282 | None:intergenic | 50.0% | |
!! | CATCAGAAGTGTCCGTGCTA+CGG | - | chr1_3:7800266-7800285 | Msa0101230:CDS | 50.0% |
TTACTCCAACCTCCGTAGCA+CGG | + | chr1_3:7800281-7800300 | None:intergenic | 50.0% | |
CTTGCATTGCCTGAACAGCT+AGG | - | chr1_3:7801057-7801076 | Msa0101230:intron | 50.0% | |
! | GACTTTTCAACAGGCCCAAC+CGG | + | chr1_3:7801629-7801648 | None:intergenic | 50.0% |
! | ACATTCTGAGTTGGCCCATC+TGG | + | chr1_3:7801998-7802017 | None:intergenic | 50.0% |
GGGATCCTCCATACCTGAAA+TGG | + | chr1_3:7802061-7802080 | None:intergenic | 50.0% | |
GTTAGGCTTCAAACCAGCAG+AGG | + | chr1_3:7802082-7802101 | None:intergenic | 50.0% | |
! | TCGACTGGTTCAGCACTGTT+AGG | + | chr1_3:7802099-7802118 | None:intergenic | 50.0% |
ATCGAGATGACCTGCTGAAG+TGG | - | chr1_3:7802169-7802188 | Msa0101230:intron | 50.0% | |
TCGAGATGACCTGCTGAAGT+GGG | - | chr1_3:7802170-7802189 | Msa0101230:intron | 50.0% | |
GAGGTGAAGCAGCCAAGTTA+GGG | - | chr1_3:7802196-7802215 | Msa0101230:intron | 50.0% | |
GAAGCAGCCAAGTTAGGGTT+TGG | - | chr1_3:7802201-7802220 | Msa0101230:intron | 50.0% | |
GAGTGTCCATTCAGATTGCG+GGG | - | chr1_3:7802339-7802358 | Msa0101230:intron | 50.0% | |
!!! | CGGGGTTATTTTTTGCCCTC+TGG | - | chr1_3:7802357-7802376 | Msa0101230:intron | 50.0% |
GTAACTTCCCATACGCCAGA+GGG | + | chr1_3:7802375-7802394 | None:intergenic | 50.0% | |
!! | TGATGATGACGGTGTGCCAA+AGG | - | chr1_3:7802641-7802660 | Msa0101230:intron | 50.0% |
ACCTGAATCGCTTCCAACTC+TGG | + | chr1_3:7802693-7802712 | None:intergenic | 50.0% | |
GAACGAGGATTGGGTGCGAT+AGG | + | chr1_3:7799744-7799763 | None:intergenic | 55.0% | |
GCCGTCAGTAGAACGAGGAT+TGG | + | chr1_3:7799754-7799773 | None:intergenic | 55.0% | |
TGCCGGTGGAAGAAGCTGTT+AGG | - | chr1_3:7799963-7799982 | Msa0101230:CDS | 55.0% | |
GCCGGTGGAAGAAGCTGTTA+GGG | - | chr1_3:7799964-7799983 | Msa0101230:CDS | 55.0% | |
GCACGGACACTTCTGATGGA+AGG | + | chr1_3:7800264-7800283 | None:intergenic | 55.0% | |
CGTAGCACGGACACTTCTGA+TGG | + | chr1_3:7800268-7800287 | None:intergenic | 55.0% | |
TTTCAACAGGCCCAACCGGA+AGG | + | chr1_3:7801625-7801644 | None:intergenic | 55.0% | |
CGAGGTGAAGCAGCCAAGTT+AGG | - | chr1_3:7802195-7802214 | Msa0101230:intron | 55.0% | |
GGTAACTTCCCATACGCCAG+AGG | + | chr1_3:7802376-7802395 | None:intergenic | 55.0% | |
GCCAGAGTTGGAAGCGATTC+AGG | - | chr1_3:7802689-7802708 | Msa0101230:intron | 55.0% | |
GACATGGCGCCATCGTTTCT+AGG | + | chr1_3:7802886-7802905 | None:intergenic | 55.0% | |
TCCTTCTCTGCAGGAGGACA+TGG | + | chr1_3:7802902-7802921 | None:intergenic | 55.0% | |
TCCTCCTGCAGAGAAGGAGA+AGG | - | chr1_3:7802904-7802923 | Msa0101230:intron | 55.0% | |
TCCTTCTCCTTCTCTGCAGG+AGG | + | chr1_3:7802908-7802927 | None:intergenic | 55.0% | |
CGTGTGCCGTCAGTAGAACG+AGG | + | chr1_3:7799759-7799778 | None:intergenic | 60.0% | |
GAGACACGGGAGAGAAGGGA+AGG | + | chr1_3:7799878-7799897 | None:intergenic | 60.0% | |
!! | CAGAAGTGTCCGTGCTACGG+AGG | - | chr1_3:7800269-7800288 | Msa0101230:CDS | 60.0% |
AGTGTCCGTGCTACGGAGGT+TGG | - | chr1_3:7800273-7800292 | Msa0101230:CDS | 60.0% | |
GGTATGGAGGATCCCTCTGC+TGG | - | chr1_3:7802066-7802085 | Msa0101230:intron | 60.0% | |
! | GACCTGCTGAAGTGGGTTCG+AGG | - | chr1_3:7802177-7802196 | Msa0101230:intron | 60.0% |
CACCTCGAACCCACTTCAGC+AGG | + | chr1_3:7802182-7802201 | None:intergenic | 60.0% | |
GCCATGTCCTCCTGCAGAGA+AGG | - | chr1_3:7802898-7802917 | Msa0101230:intron | 60.0% | |
ACTGACGGCACACGCGACGC+AGG | - | chr1_3:7799765-7799784 | Msa0101230:three_prime_UTR | 70.0% | |
GACGGCACACGCGACGCAGG+AGG | - | chr1_3:7799768-7799787 | Msa0101230:three_prime_UTR | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_3 | gene | 7799699 | 7803164 | 7799699 | ID=Msa0101230;Name=Msa0101230 |
chr1_3 | mRNA | 7799699 | 7803164 | 7799699 | ID=Msa0101230-mRNA-1;Parent=Msa0101230;Name=Msa0101230-mRNA-1;_AED=0.00;_eAED=0.00;_QI=113|1|1|1|0.5|0.33|3|197|279 |
chr1_3 | exon | 7799699 | 7800048 | 7799699 | ID=Msa0101230-mRNA-1:exon:3078;Parent=Msa0101230-mRNA-1 |
chr1_3 | exon | 7800153 | 7800796 | 7800153 | ID=Msa0101230-mRNA-1:exon:3077;Parent=Msa0101230-mRNA-1 |
chr1_3 | exon | 7803009 | 7803164 | 7803009 | ID=Msa0101230-mRNA-1:exon:3076;Parent=Msa0101230-mRNA-1 |
chr1_3 | five_prime_UTR | 7803052 | 7803164 | 7803052 | ID=Msa0101230-mRNA-1:five_prime_utr;Parent=Msa0101230-mRNA-1 |
chr1_3 | CDS | 7803009 | 7803051 | 7803009 | ID=Msa0101230-mRNA-1:cds;Parent=Msa0101230-mRNA-1 |
chr1_3 | CDS | 7800153 | 7800796 | 7800153 | ID=Msa0101230-mRNA-1:cds;Parent=Msa0101230-mRNA-1 |
chr1_3 | CDS | 7799896 | 7800048 | 7799896 | ID=Msa0101230-mRNA-1:cds;Parent=Msa0101230-mRNA-1 |
chr1_3 | three_prime_UTR | 7799699 | 7799895 | 7799699 | ID=Msa0101230-mRNA-1:three_prime_utr;Parent=Msa0101230-mRNA-1 |
Gene Sequence |
Protein sequence |