AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0101230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0101230 MtrunA17_Chr1g0149501 92.473 279 19 1 1 279 1 277 0.0 534
Msa0101230 MtrunA17_Chr6g0461511 41.243 177 94 3 30 196 374 550 9.81e-35 131
Msa0101230 MtrunA17_Chr1g0182981 53.521 71 30 1 23 90 1 71 2.22e-16 72.0
Msa0101230 MtrunA17_Chr4g0055251 37.805 82 51 0 123 204 3 84 4.48e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 80 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAACCAACACTTCAGATTT+TGG 0.127175 1_3:+7800220 None:intergenic
GCCAGAGTTGGAAGCGATTC+AGG 0.243223 1_3:-7800152 Msa0101230:intron
TTTGGTGGAAAAGGAAATAT+TGG 0.249350 1_3:-7799857 Msa0101230:three_prime_UTR
GAAATATTGGAAACGAGTTT+TGG 0.251028 1_3:-7799844 Msa0101230:three_prime_UTR
CAGAGAAGGAGAAGGAAAAT+TGG 0.276242 1_3:-7799929 Msa0101230:CDS
CGAGGTGAAGCAGCCAAGTT+AGG 0.314453 1_3:-7800646 Msa0101230:CDS
ACAACTTGAAATGACAGTTT+AGG 0.346802 1_3:-7799785 Msa0101230:three_prime_UTR
TCATTTAAACGGCCTGCAAT+AGG 0.361423 1_3:+7800394 None:intergenic
CAACTTGAAATGACAGTTTA+GGG 0.372528 1_3:-7799784 Msa0101230:three_prime_UTR
AACTGAATCAAGAGAGGAAA+AGG 0.372544 1_3:+7803131 None:intergenic
TTAGAAGAACAGCCTATTGC+AGG 0.373206 1_3:-7800406 Msa0101230:CDS
TCTGGCAAAATAGATATATC+TGG 0.373242 1_3:+7800169 None:intergenic
TCGATTACGAAATTCTTTAT+CGG 0.375032 1_3:+7800690 None:intergenic
TGAGTGTCCATTCAGATTGC+GGG 0.385405 1_3:-7800503 Msa0101230:CDS
ATATCTGGTTGATCTTCCTT+TGG 0.393013 1_3:+7800184 None:intergenic
TCATCTCTTCCTCATTTAAA+CGG 0.399399 1_3:+7800383 None:intergenic
TCGACTGGTTCAGCACTGTT+AGG 0.410500 1_3:+7800745 None:intergenic
ACCTGAATCGCTTCCAACTC+TGG 0.412695 1_3:+7800151 None:intergenic
GACATGGCGCCATCGTTTCT+AGG 0.419057 1_3:+7799958 None:intergenic
GAAATATGATGTATTGGAAT+TGG 0.431428 1_3:-7799882 Msa0101230:exon
TTTCTCCGTCAACCCTTGTC+AGG 0.435693 1_3:-7803008 Msa0101230:intron
AACAATACCAAACCCTAACT+TGG 0.442441 1_3:+7800633 None:intergenic
ACTTGTGAAATATGATGTAT+TGG 0.446517 1_3:-7799888 Msa0101230:exon
GGGAGTTTGGGATTGAGAAA+TGG 0.447404 1_3:-7799823 Msa0101230:three_prime_UTR
GAAGCAGCCAAGTTAGGGTT+TGG 0.454402 1_3:-7800640 Msa0101230:CDS
GGTATGGAGGATCCCTCTGC+TGG 0.464129 1_3:-7800775 Msa0101230:CDS
TCCTTCTCTGCAGGAGGACA+TGG 0.465704 1_3:+7799942 None:intergenic
CTCTTATACTTGAATGCAAA+AGG 0.466270 1_3:-7800579 Msa0101230:CDS
ATTTCAAAGTCAAATAATAG+AGG 0.466691 1_3:-7800610 Msa0101230:CDS
AAGAAAAGAAGAGCTGATGA+TGG 0.472982 1_3:-7800301 Msa0101230:CDS
TCCTTCTCCTTCTCTGCAGG+AGG 0.477318 1_3:+7799936 None:intergenic
AGAGAAGGAGAAGGAAAATT+GGG 0.484008 1_3:-7799928 Msa0101230:CDS
AAATAACCCCGCAATCTGAA+TGG 0.485974 1_3:+7800496 None:intergenic
CCGTCAGTAGAACGAGGATT+GGG 0.497265 1_3:+7803091 None:intergenic
GAGGTATAACAAGTCTATGA+AGG 0.500697 1_3:-7800245 Msa0101230:CDS
GAACGAGGATTGGGTGCGAT+AGG 0.507709 1_3:+7803100 None:intergenic
CACCTCGAACCCACTTCAGC+AGG 0.515291 1_3:+7800662 None:intergenic
AAAACACAATCATGAGATGA+TGG 0.519225 1_3:-7800434 Msa0101230:CDS
GAGGTGAAGCAGCCAAGTTA+GGG 0.528533 1_3:-7800645 Msa0101230:CDS
AGATTTATAATGCACGTTCG+AGG 0.531682 1_3:-7800264 Msa0101230:CDS
CTGAATCAAGAGAGGAAAAG+GGG 0.535257 1_3:+7803133 None:intergenic
TATTGCAGGCCGTTTAAATG+AGG 0.536027 1_3:-7800392 Msa0101230:CDS
ACTGAATCAAGAGAGGAAAA+GGG 0.537605 1_3:+7803132 None:intergenic
GCCATGTCCTCCTGCAGAGA+AGG 0.538358 1_3:-7799943 Msa0101230:CDS
ATTTACCTGACAAGGGTTGA+CGG 0.539125 1_3:+7803003 None:intergenic
GCCGTCAGTAGAACGAGGAT+TGG 0.540495 1_3:+7803090 None:intergenic
TAGTGAATATTTACCTGACA+AGG 0.545419 1_3:+7802995 None:intergenic
ATCGAGATGACCTGCTGAAG+TGG 0.550843 1_3:-7800672 Msa0101230:CDS
AACGAGGATTGGGTGCGATA+GGG 0.554312 1_3:+7803101 None:intergenic
ATTACGAAATTCTTTATCGG+TGG 0.564422 1_3:+7800693 None:intergenic
AGAAAAGAAGAGCTGATGAT+GGG 0.564911 1_3:-7800300 Msa0101230:CDS
TGGGAAGTTACCGTAGTATG+TGG 0.565876 1_3:-7800457 Msa0101230:CDS
GACCTGCTGAAGTGGGTTCG+AGG 0.578355 1_3:-7800664 Msa0101230:CDS
GTGAGTGTCCATTCAGATTG+CGG 0.585943 1_3:-7800504 Msa0101230:CDS
ACTGACGGCACACGCGACGC+AGG 0.590505 1_3:-7803076 Msa0101230:five_prime_UTR
AAATCAAGAGACTCATCGAC+TGG 0.594128 1_3:+7800730 None:intergenic
GACGGCACACGCGACGCAGG+AGG 0.614725 1_3:-7803073 Msa0101230:five_prime_UTR
AGGTATAACAAGTCTATGAA+GGG 0.614739 1_3:-7800244 Msa0101230:CDS
ACTTGAAATGACAGTTTAGG+GGG 0.618569 1_3:-7799782 Msa0101230:three_prime_UTR
GGTAACTTCCCATACGCCAG+AGG 0.621236 1_3:+7800468 None:intergenic
TGATGATGACGGTGTGCCAA+AGG 0.622138 1_3:-7800200 Msa0101230:CDS
TGATACCATTTCAGGTATGG+AGG 0.622154 1_3:-7800788 Msa0101230:intron
TCCTCCTGCAGAGAAGGAGA+AGG 0.625108 1_3:-7799937 Msa0101230:CDS
AACGTTATCTGTGACTATGA+CGG 0.626961 1_3:-7803045 Msa0101230:exon
TCGAGATGACCTGCTGAAGT+GGG 0.628333 1_3:-7800671 Msa0101230:CDS
TTAGGCTTCAAACCAGCAGA+GGG 0.633057 1_3:+7800763 None:intergenic
GGGTCCAAAATCTGAAGTGT+TGG 0.635922 1_3:-7800224 Msa0101230:CDS
ATACTTGAATGCAAAAGGAG+TGG 0.641681 1_3:-7800574 Msa0101230:CDS
AATAGCTTTCCTAGAAACGA+TGG 0.645047 1_3:-7799967 Msa0101230:CDS
GTAACTTCCCATACGCCAGA+GGG 0.653240 1_3:+7800469 None:intergenic
TCACTTAACTGAATCAAGAG+AGG 0.653779 1_3:+7803125 None:intergenic
AGTGAATATTTACCTGACAA+GGG 0.658458 1_3:+7802996 None:intergenic
GAGTGTCCATTCAGATTGCG+GGG 0.660517 1_3:-7800502 Msa0101230:CDS
CCCAATCCTCGTTCTACTGA+CGG 0.665393 1_3:-7803091 Msa0101230:five_prime_UTR
AACTTGAAATGACAGTTTAG+GGG 0.666557 1_3:-7799783 Msa0101230:three_prime_UTR
GTTAGGCTTCAAACCAGCAG+AGG 0.669794 1_3:+7800762 None:intergenic
TGAATCAAGAGAGGAAAAGG+GGG 0.675462 1_3:+7803134 None:intergenic
CGTGTGCCGTCAGTAGAACG+AGG 0.695306 1_3:+7803085 None:intergenic
GAAGTGTTGGTTGATGATGA+CGG 0.720616 1_3:-7800211 Msa0101230:CDS
GAATCAAGAGAGGAAAAGGG+GGG 0.729689 1_3:+7803135 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTATAGAATTTTAAAAC+AGG - chr1_3:7801320-7801339 Msa0101230:intron 10.0%
!!! TTTTTTTTAATTTTCAGATT+CGG - chr1_3:7802798-7802817 Msa0101230:intron 10.0%
!!! AAAGTTACTTAATTTTATAT+AGG - chr1_3:7803139-7803158 Msa0101230:five_prime_UTR 10.0%
!! AAATTGAAAAGTAATTACAT+TGG + chr1_3:7800061-7800080 None:intergenic 15.0%
!!! AATTTTGAAAATATTTCAAG+AGG - chr1_3:7800115-7800134 Msa0101230:intron 15.0%
!!! TTTTTTATTATCAAGTTTGT+AGG - chr1_3:7800639-7800658 Msa0101230:CDS 15.0%
!!! TTTATAAGACAATAACATTT+TGG - chr1_3:7800845-7800864 Msa0101230:intron 15.0%
!!! TTATAAGACAATAACATTTT+GGG - chr1_3:7800846-7800865 Msa0101230:intron 15.0%
!!! GTATTTTTATTCTAAGTATT+TGG - chr1_3:7801158-7801177 Msa0101230:intron 15.0%
!! TTAATAGGCAAATTAAAATT+TGG + chr1_3:7801447-7801466 None:intergenic 15.0%
!! AAATTGTGCAATATAATTAA+TGG + chr1_3:7801857-7801876 None:intergenic 15.0%
!!! CAATCTTTTCATTTTAAAAA+GGG - chr1_3:7801971-7801990 Msa0101230:intron 15.0%
!!! AAAGTCATAAGAATATTTTT+TGG + chr1_3:7802519-7802538 None:intergenic 15.0%
!! AAAAACTTAAATCCCTAAAA+CGG - chr1_3:7799901-7799920 Msa0101230:CDS 20.0%
!!! TTTTTCTAGATCTAAATGTT+AGG - chr1_3:7800003-7800022 Msa0101230:CDS 20.0%
!!! TTTTCTAGATCTAAATGTTA+GGG - chr1_3:7800004-7800023 Msa0101230:CDS 20.0%
!!! GTTTTTATTATCAAGTTTGT+TGG - chr1_3:7800526-7800545 Msa0101230:CDS 20.0%
!!! TCTGGTAAATTATTTAGTTT+TGG - chr1_3:7800902-7800921 Msa0101230:intron 20.0%
!!! TATTTTTACTGTTTCATCAT+CGG - chr1_3:7801225-7801244 Msa0101230:intron 20.0%
!!! TCATTTTTACAAATGCAAAA+TGG - chr1_3:7801252-7801271 Msa0101230:intron 20.0%
!!! CATTTTTACAAATGCAAAAT+GGG - chr1_3:7801253-7801272 Msa0101230:intron 20.0%
!!! CTTTGTAATTTTATAAATGC+AGG - chr1_3:7801281-7801300 Msa0101230:intron 20.0%
!!! TTTAGTGAATTTTCTCAATT+GGG - chr1_3:7801496-7801515 Msa0101230:intron 20.0%
!! AAAGTTAATTACAAGTCATA+CGG + chr1_3:7801656-7801675 None:intergenic 20.0%
!! ATTAACTTTGTAGTTATAAC+AGG - chr1_3:7801667-7801686 Msa0101230:intron 20.0%
!! TAACATAAACACTCAAAATT+TGG + chr1_3:7801701-7801720 None:intergenic 20.0%
!!! ACACACATTTTGTAAAATAA+GGG + chr1_3:7801813-7801832 None:intergenic 20.0%
!!! AACACACATTTTGTAAAATA+AGG + chr1_3:7801814-7801833 None:intergenic 20.0%
!!! CAATATAATTAATGGATGAT+AGG + chr1_3:7801849-7801868 None:intergenic 20.0%
!!! CCTTTTTAAAATGAAAAGAT+TGG + chr1_3:7801973-7801992 None:intergenic 20.0%
!!! CCAATCTTTTCATTTTAAAA+AGG - chr1_3:7801970-7801989 Msa0101230:intron 20.0%
!! ATTTCAAAGTCAAATAATAG+AGG - chr1_3:7802231-7802250 Msa0101230:intron 20.0%
!!! TCATAAGAATATTTTTTGGA+CGG + chr1_3:7802515-7802534 None:intergenic 20.0%
!!! AAAATTTGTTTCATCTAGAA+GGG + chr1_3:7802763-7802782 None:intergenic 20.0%
!!! TTTAAGTTTTTACAGAGACA+CGG + chr1_3:7799892-7799911 None:intergenic 25.0%
!!! TTGTTTTATTTCCGCAAATT+TGG - chr1_3:7800345-7800364 Msa0101230:CDS 25.0%
! AAATCTTAACACCAAATTTG+CGG + chr1_3:7800359-7800378 None:intergenic 25.0%
!! AAAACTCAAGGGTAAAATTT+TGG - chr1_3:7800387-7800406 Msa0101230:CDS 25.0%
!! AAACTCAAGGGTAAAATTTT+GGG - chr1_3:7800388-7800407 Msa0101230:CDS 25.0%
! AATTAAACCCAAAAACACAT+TGG - chr1_3:7800752-7800771 Msa0101230:CDS 25.0%
! TATGATCCTTGTGTTATATT+TGG - chr1_3:7800785-7800804 Msa0101230:intron 25.0%
! CTTGAAACAAATCAACAAAT+TGG - chr1_3:7800994-7801013 Msa0101230:intron 25.0%
! TAAAAATACAGTGTTCAATG+TGG + chr1_3:7801147-7801166 None:intergenic 25.0%
!! ACTATGCATTTTTATAAGTG+TGG - chr1_3:7801186-7801205 Msa0101230:intron 25.0%
!! GTTTAGTGAATTTTCTCAAT+TGG - chr1_3:7801495-7801514 Msa0101230:intron 25.0%
!!! GTTTTGTTTTTACGTATTAC+TGG - chr1_3:7801932-7801951 Msa0101230:intron 25.0%
! ATCATGTTCATGAGAAAAAT+AGG + chr1_3:7802037-7802056 None:intergenic 25.0%
! TCGATTACGAAATTCTTTAT+CGG + chr1_3:7802154-7802173 None:intergenic 25.0%
!!! ATTTTTTGAATCTTGTGTCT+TGG + chr1_3:7802317-7802336 None:intergenic 25.0%
! ATTCAATAGTAATTCTGTTC+TGG - chr1_3:7802716-7802735 Msa0101230:intron 25.0%
!! GAAAATTTGTTTCATCTAGA+AGG + chr1_3:7802764-7802783 None:intergenic 25.0%
! ACTTGTGAAATATGATGTAT+TGG - chr1_3:7802953-7802972 Msa0101230:intron 25.0%
! GAAATATGATGTATTGGAAT+TGG - chr1_3:7802959-7802978 Msa0101230:intron 25.0%
!! AAATATTGGAAACGAGTTTT+GGG - chr1_3:7802998-7803017 Msa0101230:intron 25.0%
AGTGAATATTTACCTGACAA+GGG + chr1_3:7799848-7799867 None:intergenic 30.0%
TAGTGAATATTTACCTGACA+AGG + chr1_3:7799849-7799868 None:intergenic 30.0%
! TTAAGTTTTTACAGAGACAC+GGG + chr1_3:7799891-7799910 None:intergenic 30.0%
ATTGAATGTAATTGTCGTTG+TGG - chr1_3:7800219-7800238 Msa0101230:CDS 30.0%
ATTTGCAATTGCAAAACTCA+AGG - chr1_3:7800375-7800394 Msa0101230:CDS 30.0%
TTTGCAATTGCAAAACTCAA+GGG - chr1_3:7800376-7800395 Msa0101230:CDS 30.0%
! AAAAACCTTACCTTTTGCTA+GGG + chr1_3:7800455-7800474 None:intergenic 30.0%
! AAAAAACCTTACCTTTTGCT+AGG + chr1_3:7800456-7800475 None:intergenic 30.0%
GATGAATATTGACAGAATGT+AGG - chr1_3:7800548-7800567 Msa0101230:CDS 30.0%
CAAGTTTGTAGGATGAATAT+TGG - chr1_3:7800650-7800669 Msa0101230:CDS 30.0%
! TTCTGAACCAATGTGTTTTT+GGG + chr1_3:7800762-7800781 None:intergenic 30.0%
! ATTCTGAACCAATGTGTTTT+TGG + chr1_3:7800763-7800782 None:intergenic 30.0%
GTACAACCAAATATAACACA+AGG + chr1_3:7800794-7800813 None:intergenic 30.0%
CAAGGAAATTAAGAATGTTC+TGG - chr1_3:7800884-7800903 Msa0101230:intron 30.0%
TCAAATATCACCAGTAACTT+TGG - chr1_3:7801119-7801138 Msa0101230:intron 30.0%
TAGTGACAAAATAGCACTAT+CGG + chr1_3:7801361-7801380 None:intergenic 30.0%
! TTTTCGTGAATGCTGTTAAT+AGG + chr1_3:7801462-7801481 None:intergenic 30.0%
ATACGTAACTTCTTTCAGTA+TGG - chr1_3:7801539-7801558 Msa0101230:intron 30.0%
TCAAGTATGTCAATTGATGT+TGG - chr1_3:7801587-7801606 Msa0101230:intron 30.0%
! TTTGAGTTTATGTCAAACAC+TGG - chr1_3:7801723-7801742 Msa0101230:intron 30.0%
TAAATGAGAGTTGAAGATGA+CGG + chr1_3:7801772-7801791 None:intergenic 30.0%
ACGCAAAAGAAACAATTAGA+AGG + chr1_3:7801914-7801933 None:intergenic 30.0%
!! ATTTTAAAAAGGGTCCAGAT+GGG - chr1_3:7801981-7802000 Msa0101230:intron 30.0%
ATTACGAAATTCTTTATCGG+TGG + chr1_3:7802151-7802170 None:intergenic 30.0%
CTCTTATACTTGAATGCAAA+AGG - chr1_3:7802262-7802281 Msa0101230:intron 30.0%
! ATTGTGTTTTCCACATACTA+CGG + chr1_3:7802397-7802416 None:intergenic 30.0%
AAAACACAATCATGAGATGA+TGG - chr1_3:7802407-7802426 Msa0101230:intron 30.0%
TCATCTCTTCCTCATTTAAA+CGG + chr1_3:7802461-7802480 None:intergenic 30.0%
AGGTATAACAAGTCTATGAA+GGG - chr1_3:7802597-7802616 Msa0101230:intron 30.0%
TCTGGCAAAATAGATATATC+TGG + chr1_3:7802675-7802694 None:intergenic 30.0%
! TATATCTATTTTGCCAGAGT+TGG - chr1_3:7802677-7802696 Msa0101230:intron 30.0%
!!! GATGTATTGGAATTGGTTTT+TGG - chr1_3:7802966-7802985 Msa0101230:intron 30.0%
TTTGGTGGAAAAGGAAATAT+TGG - chr1_3:7802984-7803003 Msa0101230:intron 30.0%
! GAAATATTGGAAACGAGTTT+TGG - chr1_3:7802997-7803016 Msa0101230:intron 30.0%
ACAACTTGAAATGACAGTTT+AGG - chr1_3:7803056-7803075 Msa0101230:five_prime_UTR 30.0%
CAACTTGAAATGACAGTTTA+GGG - chr1_3:7803057-7803076 Msa0101230:five_prime_UTR 30.0%
AACTTGAAATGACAGTTTAG+GGG - chr1_3:7803058-7803077 Msa0101230:five_prime_UTR 30.0%
ACTGAATCAAGAGAGGAAAA+GGG + chr1_3:7799712-7799731 None:intergenic 35.0%
AACTGAATCAAGAGAGGAAA+AGG + chr1_3:7799713-7799732 None:intergenic 35.0%
TCACTTAACTGAATCAAGAG+AGG + chr1_3:7799719-7799738 None:intergenic 35.0%
AACGTTATCTGTGACTATGA+CGG - chr1_3:7799796-7799815 Msa0101230:three_prime_UTR 35.0%
! TGTGAAACGAAACCGTTTTA+GGG + chr1_3:7799916-7799935 None:intergenic 35.0%
! ATGTGAAACGAAACCGTTTT+AGG + chr1_3:7799917-7799936 None:intergenic 35.0%
!!! CCTTGTTTGTTTTTTCTTGC+CGG - chr1_3:7799946-7799965 Msa0101230:CDS 35.0%
TATTGACAGAATGTAGGTTC+TGG - chr1_3:7800554-7800573 Msa0101230:CDS 35.0%
! TATTGGAAGAGTGTAGATTG+TGG - chr1_3:7800667-7800686 Msa0101230:CDS 35.0%
!!! ACATTTTGGGTTCGTGAATT+TGG - chr1_3:7800859-7800878 Msa0101230:intron 35.0%
!! TCTGATCGATCCTCTTATTT+TGG - chr1_3:7800927-7800946 Msa0101230:intron 35.0%
AACTCCTATGCCAAAATAAG+AGG + chr1_3:7800940-7800959 None:intergenic 35.0%
!! TAACTGCAATCAGCTTGTTA+AGG - chr1_3:7801018-7801037 Msa0101230:intron 35.0%
AGTGACAAAATAGCACTATC+GGG + chr1_3:7801360-7801379 None:intergenic 35.0%
CTGAAAGAAGTTACGTATCA+AGG + chr1_3:7801537-7801556 None:intergenic 35.0%
TGGTCTATTAGTAAACCTTC+CGG - chr1_3:7801607-7801626 Msa0101230:intron 35.0%
TATTAGTAAACCTTCCGGTT+GGG - chr1_3:7801612-7801631 Msa0101230:intron 35.0%
AAATGAGAGTTGAAGATGAC+GGG + chr1_3:7801771-7801790 None:intergenic 35.0%
!! CATTTTAAAAAGGGTCCAGA+TGG - chr1_3:7801980-7801999 Msa0101230:intron 35.0%
AGTAAGTACACATTCTGAGT+TGG + chr1_3:7802007-7802026 None:intergenic 35.0%
CATGAACATGATACCATTTC+AGG - chr1_3:7802045-7802064 Msa0101230:intron 35.0%
! ACATGATACCATTTCAGGTA+TGG - chr1_3:7802050-7802069 Msa0101230:intron 35.0%
AACAATACCAAACCCTAACT+TGG + chr1_3:7802211-7802230 None:intergenic 35.0%
ATACTTGAATGCAAAAGGAG+TGG - chr1_3:7802267-7802286 Msa0101230:intron 35.0%
AAGAAAAGAAGAGCTGATGA+TGG - chr1_3:7802540-7802559 Msa0101230:intron 35.0%
AGAAAAGAAGAGCTGATGAT+GGG - chr1_3:7802541-7802560 Msa0101230:intron 35.0%
AGATTTATAATGCACGTTCG+AGG - chr1_3:7802577-7802596 Msa0101230:intron 35.0%
GAGGTATAACAAGTCTATGA+AGG - chr1_3:7802596-7802615 Msa0101230:intron 35.0%
! TCAACCAACACTTCAGATTT+TGG + chr1_3:7802624-7802643 None:intergenic 35.0%
ATATCTGGTTGATCTTCCTT+TGG + chr1_3:7802660-7802679 None:intergenic 35.0%
AATAGCTTTCCTAGAAACGA+TGG - chr1_3:7802874-7802893 Msa0101230:intron 35.0%
AGAGAAGGAGAAGGAAAATT+GGG - chr1_3:7802913-7802932 Msa0101230:intron 35.0%
!!! GTATTGGAATTGGTTTTTGG+TGG - chr1_3:7802969-7802988 Msa0101230:intron 35.0%
!!! GAATTGGTTTTTGGTGGAAA+AGG - chr1_3:7802975-7802994 Msa0101230:intron 35.0%
ACTTGAAATGACAGTTTAGG+GGG - chr1_3:7803059-7803078 Msa0101230:five_prime_UTR 35.0%
TGAATCAAGAGAGGAAAAGG+GGG + chr1_3:7799710-7799729 None:intergenic 40.0%
CTGAATCAAGAGAGGAAAAG+GGG + chr1_3:7799711-7799730 None:intergenic 40.0%
ATTTACCTGACAAGGGTTGA+CGG + chr1_3:7799841-7799860 None:intergenic 40.0%
CCGGCAAGAAAAAACAAACA+AGG + chr1_3:7799949-7799968 None:intergenic 40.0%
!!! TGTTTGTTTTTTCTTGCCGG+TGG - chr1_3:7799949-7799968 Msa0101230:CDS 40.0%
TGTAATTGTCGTTGTGGTGT+TGG - chr1_3:7800225-7800244 Msa0101230:CDS 40.0%
AAACGACACATATGCAGGAA+GGG + chr1_3:7800422-7800441 None:intergenic 40.0%
CAAAGAAACGACACATATGC+AGG + chr1_3:7800427-7800446 None:intergenic 40.0%
CTTTGTTCTACCCTAGCAAA+AGG - chr1_3:7800442-7800461 Msa0101230:CDS 40.0%
TTCTACCCTAGCAAAAGGTA+AGG - chr1_3:7800447-7800466 Msa0101230:CDS 40.0%
!!! CGATCCTCTTATTTTGGCAT+AGG - chr1_3:7800933-7800952 Msa0101230:intron 40.0%
ATATTTGATCAGCGCGTTCA+TGG + chr1_3:7801107-7801126 None:intergenic 40.0%
CTATTAGTAAACCTTCCGGT+TGG - chr1_3:7801611-7801630 Msa0101230:intron 40.0%
! TGATACCATTTCAGGTATGG+AGG - chr1_3:7802053-7802072 Msa0101230:intron 40.0%
AAATCAAGAGACTCATCGAC+TGG + chr1_3:7802114-7802133 None:intergenic 40.0%
AAATAACCCCGCAATCTGAA+TGG + chr1_3:7802348-7802367 None:intergenic 40.0%
TTAGAAGAACAGCCTATTGC+AGG - chr1_3:7802435-7802454 Msa0101230:intron 40.0%
TCATTTAAACGGCCTGCAAT+AGG + chr1_3:7802450-7802469 None:intergenic 40.0%
TATTGCAGGCCGTTTAAATG+AGG - chr1_3:7802449-7802468 Msa0101230:intron 40.0%
!! GAAGTGTTGGTTGATGATGA+CGG - chr1_3:7802630-7802649 Msa0101230:intron 40.0%
GGTATTTCACACATCCGAAT+TGG - chr1_3:7802737-7802756 Msa0101230:intron 40.0%
TTCATCTAGAAGGGCCAATT+CGG + chr1_3:7802754-7802773 None:intergenic 40.0%
CAGAGAAGGAGAAGGAAAAT+TGG - chr1_3:7802912-7802931 Msa0101230:intron 40.0%
!!! GAAACGAGTTTTGGGAGTTT+GGG - chr1_3:7803006-7803025 Msa0101230:intron 40.0%
GAATCAAGAGAGGAAAAGGG+GGG + chr1_3:7799709-7799728 None:intergenic 45.0%
TGTCAGTGTCGTGTAGTGTT+CGG + chr1_3:7800164-7800183 None:intergenic 45.0%
! TTCTGATGGAAGGGCATGTT+CGG + chr1_3:7800254-7800273 None:intergenic 45.0%
GAAACGACACATATGCAGGA+AGG + chr1_3:7800423-7800442 None:intergenic 45.0%
! GGGTTCGTGAATTTGGTTCA+AGG - chr1_3:7800866-7800885 Msa0101230:intron 45.0%
TTGCATTGCCTGAACAGCTA+GGG - chr1_3:7801058-7801077 Msa0101230:intron 45.0%
! TGTCATTTCCCTAGCTGTTC+AGG + chr1_3:7801069-7801088 None:intergenic 45.0%
CAATGTGGCTCCAAAGTTAC+TGG + chr1_3:7801132-7801151 None:intergenic 45.0%
!!! TACGGCATCGACTTTTCAAC+AGG + chr1_3:7801638-7801657 None:intergenic 45.0%
TTAGGCTTCAAACCAGCAGA+GGG + chr1_3:7802081-7802100 None:intergenic 45.0%
GTGAGTGTCCATTCAGATTG+CGG - chr1_3:7802337-7802356 Msa0101230:intron 45.0%
TGAGTGTCCATTCAGATTGC+GGG - chr1_3:7802338-7802357 Msa0101230:intron 45.0%
!!! ATTTTTTGCCCTCTGGCGTA+TGG - chr1_3:7802364-7802383 Msa0101230:intron 45.0%
!!! TTTTTTGCCCTCTGGCGTAT+GGG - chr1_3:7802365-7802384 Msa0101230:intron 45.0%
TGGGAAGTTACCGTAGTATG+TGG - chr1_3:7802384-7802403 Msa0101230:intron 45.0%
! GGGTCCAAAATCTGAAGTGT+TGG - chr1_3:7802617-7802636 Msa0101230:intron 45.0%
! TTTTCCTTCTCCTTCTCTGC+AGG + chr1_3:7802911-7802930 None:intergenic 45.0%
!!! GGAAACGAGTTTTGGGAGTT+TGG - chr1_3:7803005-7803024 Msa0101230:intron 45.0%
! GGGAGTTTGGGATTGAGAAA+TGG - chr1_3:7803018-7803037 Msa0101230:CDS 45.0%
AACGAGGATTGGGTGCGATA+GGG + chr1_3:7799743-7799762 None:intergenic 50.0%
CCGTCAGTAGAACGAGGATT+GGG + chr1_3:7799753-7799772 None:intergenic 50.0%
CCCAATCCTCGTTCTACTGA+CGG - chr1_3:7799750-7799769 Msa0101230:three_prime_UTR 50.0%
TTTCTCCGTCAACCCTTGTC+AGG - chr1_3:7799833-7799852 Msa0101230:three_prime_UTR 50.0%
TACAGAGACACGGGAGAGAA+GGG + chr1_3:7799882-7799901 None:intergenic 50.0%
TTACAGAGACACGGGAGAGA+AGG + chr1_3:7799883-7799902 None:intergenic 50.0%
ACCCTAACAGCTTCTTCCAC+CGG + chr1_3:7799968-7799987 None:intergenic 50.0%
CACGGACACTTCTGATGGAA+GGG + chr1_3:7800263-7800282 None:intergenic 50.0%
!! CATCAGAAGTGTCCGTGCTA+CGG - chr1_3:7800266-7800285 Msa0101230:CDS 50.0%
TTACTCCAACCTCCGTAGCA+CGG + chr1_3:7800281-7800300 None:intergenic 50.0%
CTTGCATTGCCTGAACAGCT+AGG - chr1_3:7801057-7801076 Msa0101230:intron 50.0%
! GACTTTTCAACAGGCCCAAC+CGG + chr1_3:7801629-7801648 None:intergenic 50.0%
! ACATTCTGAGTTGGCCCATC+TGG + chr1_3:7801998-7802017 None:intergenic 50.0%
GGGATCCTCCATACCTGAAA+TGG + chr1_3:7802061-7802080 None:intergenic 50.0%
GTTAGGCTTCAAACCAGCAG+AGG + chr1_3:7802082-7802101 None:intergenic 50.0%
! TCGACTGGTTCAGCACTGTT+AGG + chr1_3:7802099-7802118 None:intergenic 50.0%
ATCGAGATGACCTGCTGAAG+TGG - chr1_3:7802169-7802188 Msa0101230:intron 50.0%
TCGAGATGACCTGCTGAAGT+GGG - chr1_3:7802170-7802189 Msa0101230:intron 50.0%
GAGGTGAAGCAGCCAAGTTA+GGG - chr1_3:7802196-7802215 Msa0101230:intron 50.0%
GAAGCAGCCAAGTTAGGGTT+TGG - chr1_3:7802201-7802220 Msa0101230:intron 50.0%
GAGTGTCCATTCAGATTGCG+GGG - chr1_3:7802339-7802358 Msa0101230:intron 50.0%
!!! CGGGGTTATTTTTTGCCCTC+TGG - chr1_3:7802357-7802376 Msa0101230:intron 50.0%
GTAACTTCCCATACGCCAGA+GGG + chr1_3:7802375-7802394 None:intergenic 50.0%
!! TGATGATGACGGTGTGCCAA+AGG - chr1_3:7802641-7802660 Msa0101230:intron 50.0%
ACCTGAATCGCTTCCAACTC+TGG + chr1_3:7802693-7802712 None:intergenic 50.0%
GAACGAGGATTGGGTGCGAT+AGG + chr1_3:7799744-7799763 None:intergenic 55.0%
GCCGTCAGTAGAACGAGGAT+TGG + chr1_3:7799754-7799773 None:intergenic 55.0%
TGCCGGTGGAAGAAGCTGTT+AGG - chr1_3:7799963-7799982 Msa0101230:CDS 55.0%
GCCGGTGGAAGAAGCTGTTA+GGG - chr1_3:7799964-7799983 Msa0101230:CDS 55.0%
GCACGGACACTTCTGATGGA+AGG + chr1_3:7800264-7800283 None:intergenic 55.0%
CGTAGCACGGACACTTCTGA+TGG + chr1_3:7800268-7800287 None:intergenic 55.0%
TTTCAACAGGCCCAACCGGA+AGG + chr1_3:7801625-7801644 None:intergenic 55.0%
CGAGGTGAAGCAGCCAAGTT+AGG - chr1_3:7802195-7802214 Msa0101230:intron 55.0%
GGTAACTTCCCATACGCCAG+AGG + chr1_3:7802376-7802395 None:intergenic 55.0%
GCCAGAGTTGGAAGCGATTC+AGG - chr1_3:7802689-7802708 Msa0101230:intron 55.0%
GACATGGCGCCATCGTTTCT+AGG + chr1_3:7802886-7802905 None:intergenic 55.0%
TCCTTCTCTGCAGGAGGACA+TGG + chr1_3:7802902-7802921 None:intergenic 55.0%
TCCTCCTGCAGAGAAGGAGA+AGG - chr1_3:7802904-7802923 Msa0101230:intron 55.0%
TCCTTCTCCTTCTCTGCAGG+AGG + chr1_3:7802908-7802927 None:intergenic 55.0%
CGTGTGCCGTCAGTAGAACG+AGG + chr1_3:7799759-7799778 None:intergenic 60.0%
GAGACACGGGAGAGAAGGGA+AGG + chr1_3:7799878-7799897 None:intergenic 60.0%
!! CAGAAGTGTCCGTGCTACGG+AGG - chr1_3:7800269-7800288 Msa0101230:CDS 60.0%
AGTGTCCGTGCTACGGAGGT+TGG - chr1_3:7800273-7800292 Msa0101230:CDS 60.0%
GGTATGGAGGATCCCTCTGC+TGG - chr1_3:7802066-7802085 Msa0101230:intron 60.0%
! GACCTGCTGAAGTGGGTTCG+AGG - chr1_3:7802177-7802196 Msa0101230:intron 60.0%
CACCTCGAACCCACTTCAGC+AGG + chr1_3:7802182-7802201 None:intergenic 60.0%
GCCATGTCCTCCTGCAGAGA+AGG - chr1_3:7802898-7802917 Msa0101230:intron 60.0%
ACTGACGGCACACGCGACGC+AGG - chr1_3:7799765-7799784 Msa0101230:three_prime_UTR 70.0%
GACGGCACACGCGACGCAGG+AGG - chr1_3:7799768-7799787 Msa0101230:three_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 7799699 7803164 7799699 ID=Msa0101230;Name=Msa0101230
chr1_3 mRNA 7799699 7803164 7799699 ID=Msa0101230-mRNA-1;Parent=Msa0101230;Name=Msa0101230-mRNA-1;_AED=0.00;_eAED=0.00;_QI=113|1|1|1|0.5|0.33|3|197|279
chr1_3 exon 7799699 7800048 7799699 ID=Msa0101230-mRNA-1:exon:3078;Parent=Msa0101230-mRNA-1
chr1_3 exon 7800153 7800796 7800153 ID=Msa0101230-mRNA-1:exon:3077;Parent=Msa0101230-mRNA-1
chr1_3 exon 7803009 7803164 7803009 ID=Msa0101230-mRNA-1:exon:3076;Parent=Msa0101230-mRNA-1
chr1_3 five_prime_UTR 7803052 7803164 7803052 ID=Msa0101230-mRNA-1:five_prime_utr;Parent=Msa0101230-mRNA-1
chr1_3 CDS 7803009 7803051 7803009 ID=Msa0101230-mRNA-1:cds;Parent=Msa0101230-mRNA-1
chr1_3 CDS 7800153 7800796 7800153 ID=Msa0101230-mRNA-1:cds;Parent=Msa0101230-mRNA-1
chr1_3 CDS 7799896 7800048 7799896 ID=Msa0101230-mRNA-1:cds;Parent=Msa0101230-mRNA-1
chr1_3 three_prime_UTR 7799699 7799895 7799699 ID=Msa0101230-mRNA-1:three_prime_utr;Parent=Msa0101230-mRNA-1
Gene Sequence

>Msa0101230

ATGACGGATCGACACAAACATTTTCTCCGTCAACCCTTGTCAGGTATGGAGGATCCCTCTGCTGGTTTGAAGCCTAACAGTGCTGAACCAGTCGATGAGTCTCTTGATTTCGCTAAACACTTTGCCACCGATAAAGAATTTCGTAATCGAGATGACCTGCTGAAGTGGGTTCGAGGTGAAGCAGCCAAGTTAGGGTTTGGTATTGTTATTTCAAAGTCAAATAATAGAGGAACACAAACTCTTATACTTGAATGCAAAAGGAGTGGTGTATATAAGAAGCAGTCGAAACGCCAAGACACAAGATTCAAAAAATGTGAGTGTCCATTCAGATTGCGGGGTTATTTTTTGCCCTCTGGCGTATGGGAAGTTACCGTAGTATGTGGAAAACACAATCATGAGATGATGGAAAATTTAGAAGAACAGCCTATTGCAGGCCGTTTAAATGAGGAAGAGATGAAACTCGTTCATGAGATGACAAATAACACTGTCCGTCCAAAAAATATTCTTATGACTTTGAAGAAAAGAAGAGCTGATGATGGGATTACTATCAAGCAGATTTATAATGCACGTTCGAGGTATAACAAGTCTATGAAGGGTCCAAAATCTGAAGTGTTGGTTGATGATGACGGTGTGCCAAAGGAAGATCAACCAGATATATCTATTTTGCCAGAGTTGGAAGCGATTCAGATTCGGTTTAACAATGCTGATTACAATACGAAGATACTTATTAAAGAGCAGCTGCATCAAATAGCTTTCCTAGAAACGATGGCGCCATGTCCTCCTGCAGAGAAGGAGAAGGAAAATTGGGACTTTTATGATTTAGAAACTTGTGAAATATGA

Protein sequence

>Msa0101230

MTDRHKHFLRQPLSGMEDPSAGLKPNSAEPVDESLDFAKHFATDKEFRNRDDLLKWVRGEAAKLGFGIVISKSNNRGTQTLILECKRSGVYKKQSKRQDTRFKKCECPFRLRGYFLPSGVWEVTVVCGKHNHEMMENLEEQPIAGRLNEEEMKLVHEMTNNTVRPKNILMTLKKRRADDGITIKQIYNARSRYNKSMKGPKSEVLVDDDGVPKEDQPDISILPELEAIQIRFNNADYNTKILIKEQLHQIAFLETMAPCPPAEKEKENWDFYDLETCEI*