Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0101230 | G7I7I8 | 92.473 | 279 | 19 | 1 | 1 | 279 | 1 | 277 | 0.0 | 534 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0101230 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0101230 | MtrunA17_Chr1g0149501 | 92.473 | 279 | 19 | 1 | 1 | 279 | 1 | 277 | 0.0 | 534 |
| Msa0101230 | MtrunA17_Chr6g0461511 | 41.243 | 177 | 94 | 3 | 30 | 196 | 374 | 550 | 9.81e-35 | 131 |
| Msa0101230 | MtrunA17_Chr1g0182981 | 53.521 | 71 | 30 | 1 | 23 | 90 | 1 | 71 | 2.22e-16 | 72.0 |
| Msa0101230 | MtrunA17_Chr4g0055251 | 37.805 | 82 | 51 | 0 | 123 | 204 | 3 | 84 | 4.48e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 80 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAACCAACACTTCAGATTT+TGG | 0.127175 | 1_3:+7800220 | None:intergenic |
| GCCAGAGTTGGAAGCGATTC+AGG | 0.243223 | 1_3:-7800152 | Msa0101230:intron |
| TTTGGTGGAAAAGGAAATAT+TGG | 0.249350 | 1_3:-7799857 | Msa0101230:three_prime_UTR |
| GAAATATTGGAAACGAGTTT+TGG | 0.251028 | 1_3:-7799844 | Msa0101230:three_prime_UTR |
| CAGAGAAGGAGAAGGAAAAT+TGG | 0.276242 | 1_3:-7799929 | Msa0101230:CDS |
| CGAGGTGAAGCAGCCAAGTT+AGG | 0.314453 | 1_3:-7800646 | Msa0101230:CDS |
| ACAACTTGAAATGACAGTTT+AGG | 0.346802 | 1_3:-7799785 | Msa0101230:three_prime_UTR |
| TCATTTAAACGGCCTGCAAT+AGG | 0.361423 | 1_3:+7800394 | None:intergenic |
| CAACTTGAAATGACAGTTTA+GGG | 0.372528 | 1_3:-7799784 | Msa0101230:three_prime_UTR |
| AACTGAATCAAGAGAGGAAA+AGG | 0.372544 | 1_3:+7803131 | None:intergenic |
| TTAGAAGAACAGCCTATTGC+AGG | 0.373206 | 1_3:-7800406 | Msa0101230:CDS |
| TCTGGCAAAATAGATATATC+TGG | 0.373242 | 1_3:+7800169 | None:intergenic |
| TCGATTACGAAATTCTTTAT+CGG | 0.375032 | 1_3:+7800690 | None:intergenic |
| TGAGTGTCCATTCAGATTGC+GGG | 0.385405 | 1_3:-7800503 | Msa0101230:CDS |
| ATATCTGGTTGATCTTCCTT+TGG | 0.393013 | 1_3:+7800184 | None:intergenic |
| TCATCTCTTCCTCATTTAAA+CGG | 0.399399 | 1_3:+7800383 | None:intergenic |
| TCGACTGGTTCAGCACTGTT+AGG | 0.410500 | 1_3:+7800745 | None:intergenic |
| ACCTGAATCGCTTCCAACTC+TGG | 0.412695 | 1_3:+7800151 | None:intergenic |
| GACATGGCGCCATCGTTTCT+AGG | 0.419057 | 1_3:+7799958 | None:intergenic |
| GAAATATGATGTATTGGAAT+TGG | 0.431428 | 1_3:-7799882 | Msa0101230:exon |
| TTTCTCCGTCAACCCTTGTC+AGG | 0.435693 | 1_3:-7803008 | Msa0101230:intron |
| AACAATACCAAACCCTAACT+TGG | 0.442441 | 1_3:+7800633 | None:intergenic |
| ACTTGTGAAATATGATGTAT+TGG | 0.446517 | 1_3:-7799888 | Msa0101230:exon |
| GGGAGTTTGGGATTGAGAAA+TGG | 0.447404 | 1_3:-7799823 | Msa0101230:three_prime_UTR |
| GAAGCAGCCAAGTTAGGGTT+TGG | 0.454402 | 1_3:-7800640 | Msa0101230:CDS |
| GGTATGGAGGATCCCTCTGC+TGG | 0.464129 | 1_3:-7800775 | Msa0101230:CDS |
| TCCTTCTCTGCAGGAGGACA+TGG | 0.465704 | 1_3:+7799942 | None:intergenic |
| CTCTTATACTTGAATGCAAA+AGG | 0.466270 | 1_3:-7800579 | Msa0101230:CDS |
| ATTTCAAAGTCAAATAATAG+AGG | 0.466691 | 1_3:-7800610 | Msa0101230:CDS |
| AAGAAAAGAAGAGCTGATGA+TGG | 0.472982 | 1_3:-7800301 | Msa0101230:CDS |
| TCCTTCTCCTTCTCTGCAGG+AGG | 0.477318 | 1_3:+7799936 | None:intergenic |
| AGAGAAGGAGAAGGAAAATT+GGG | 0.484008 | 1_3:-7799928 | Msa0101230:CDS |
| AAATAACCCCGCAATCTGAA+TGG | 0.485974 | 1_3:+7800496 | None:intergenic |
| CCGTCAGTAGAACGAGGATT+GGG | 0.497265 | 1_3:+7803091 | None:intergenic |
| GAGGTATAACAAGTCTATGA+AGG | 0.500697 | 1_3:-7800245 | Msa0101230:CDS |
| GAACGAGGATTGGGTGCGAT+AGG | 0.507709 | 1_3:+7803100 | None:intergenic |
| CACCTCGAACCCACTTCAGC+AGG | 0.515291 | 1_3:+7800662 | None:intergenic |
| AAAACACAATCATGAGATGA+TGG | 0.519225 | 1_3:-7800434 | Msa0101230:CDS |
| GAGGTGAAGCAGCCAAGTTA+GGG | 0.528533 | 1_3:-7800645 | Msa0101230:CDS |
| AGATTTATAATGCACGTTCG+AGG | 0.531682 | 1_3:-7800264 | Msa0101230:CDS |
| CTGAATCAAGAGAGGAAAAG+GGG | 0.535257 | 1_3:+7803133 | None:intergenic |
| TATTGCAGGCCGTTTAAATG+AGG | 0.536027 | 1_3:-7800392 | Msa0101230:CDS |
| ACTGAATCAAGAGAGGAAAA+GGG | 0.537605 | 1_3:+7803132 | None:intergenic |
| GCCATGTCCTCCTGCAGAGA+AGG | 0.538358 | 1_3:-7799943 | Msa0101230:CDS |
| ATTTACCTGACAAGGGTTGA+CGG | 0.539125 | 1_3:+7803003 | None:intergenic |
| GCCGTCAGTAGAACGAGGAT+TGG | 0.540495 | 1_3:+7803090 | None:intergenic |
| TAGTGAATATTTACCTGACA+AGG | 0.545419 | 1_3:+7802995 | None:intergenic |
| ATCGAGATGACCTGCTGAAG+TGG | 0.550843 | 1_3:-7800672 | Msa0101230:CDS |
| AACGAGGATTGGGTGCGATA+GGG | 0.554312 | 1_3:+7803101 | None:intergenic |
| ATTACGAAATTCTTTATCGG+TGG | 0.564422 | 1_3:+7800693 | None:intergenic |
| AGAAAAGAAGAGCTGATGAT+GGG | 0.564911 | 1_3:-7800300 | Msa0101230:CDS |
| TGGGAAGTTACCGTAGTATG+TGG | 0.565876 | 1_3:-7800457 | Msa0101230:CDS |
| GACCTGCTGAAGTGGGTTCG+AGG | 0.578355 | 1_3:-7800664 | Msa0101230:CDS |
| GTGAGTGTCCATTCAGATTG+CGG | 0.585943 | 1_3:-7800504 | Msa0101230:CDS |
| ACTGACGGCACACGCGACGC+AGG | 0.590505 | 1_3:-7803076 | Msa0101230:five_prime_UTR |
| AAATCAAGAGACTCATCGAC+TGG | 0.594128 | 1_3:+7800730 | None:intergenic |
| GACGGCACACGCGACGCAGG+AGG | 0.614725 | 1_3:-7803073 | Msa0101230:five_prime_UTR |
| AGGTATAACAAGTCTATGAA+GGG | 0.614739 | 1_3:-7800244 | Msa0101230:CDS |
| ACTTGAAATGACAGTTTAGG+GGG | 0.618569 | 1_3:-7799782 | Msa0101230:three_prime_UTR |
| GGTAACTTCCCATACGCCAG+AGG | 0.621236 | 1_3:+7800468 | None:intergenic |
| TGATGATGACGGTGTGCCAA+AGG | 0.622138 | 1_3:-7800200 | Msa0101230:CDS |
| TGATACCATTTCAGGTATGG+AGG | 0.622154 | 1_3:-7800788 | Msa0101230:intron |
| TCCTCCTGCAGAGAAGGAGA+AGG | 0.625108 | 1_3:-7799937 | Msa0101230:CDS |
| AACGTTATCTGTGACTATGA+CGG | 0.626961 | 1_3:-7803045 | Msa0101230:exon |
| TCGAGATGACCTGCTGAAGT+GGG | 0.628333 | 1_3:-7800671 | Msa0101230:CDS |
| TTAGGCTTCAAACCAGCAGA+GGG | 0.633057 | 1_3:+7800763 | None:intergenic |
| GGGTCCAAAATCTGAAGTGT+TGG | 0.635922 | 1_3:-7800224 | Msa0101230:CDS |
| ATACTTGAATGCAAAAGGAG+TGG | 0.641681 | 1_3:-7800574 | Msa0101230:CDS |
| AATAGCTTTCCTAGAAACGA+TGG | 0.645047 | 1_3:-7799967 | Msa0101230:CDS |
| GTAACTTCCCATACGCCAGA+GGG | 0.653240 | 1_3:+7800469 | None:intergenic |
| TCACTTAACTGAATCAAGAG+AGG | 0.653779 | 1_3:+7803125 | None:intergenic |
| AGTGAATATTTACCTGACAA+GGG | 0.658458 | 1_3:+7802996 | None:intergenic |
| GAGTGTCCATTCAGATTGCG+GGG | 0.660517 | 1_3:-7800502 | Msa0101230:CDS |
| CCCAATCCTCGTTCTACTGA+CGG | 0.665393 | 1_3:-7803091 | Msa0101230:five_prime_UTR |
| AACTTGAAATGACAGTTTAG+GGG | 0.666557 | 1_3:-7799783 | Msa0101230:three_prime_UTR |
| GTTAGGCTTCAAACCAGCAG+AGG | 0.669794 | 1_3:+7800762 | None:intergenic |
| TGAATCAAGAGAGGAAAAGG+GGG | 0.675462 | 1_3:+7803134 | None:intergenic |
| CGTGTGCCGTCAGTAGAACG+AGG | 0.695306 | 1_3:+7803085 | None:intergenic |
| GAAGTGTTGGTTGATGATGA+CGG | 0.720616 | 1_3:-7800211 | Msa0101230:CDS |
| GAATCAAGAGAGGAAAAGGG+GGG | 0.729689 | 1_3:+7803135 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTATAGAATTTTAAAAC+AGG | - | chr1_3:7801320-7801339 | Msa0101230:intron | 10.0% |
| !!! | TTTTTTTTAATTTTCAGATT+CGG | - | chr1_3:7802798-7802817 | Msa0101230:intron | 10.0% |
| !!! | AAAGTTACTTAATTTTATAT+AGG | - | chr1_3:7803139-7803158 | Msa0101230:five_prime_UTR | 10.0% |
| !! | AAATTGAAAAGTAATTACAT+TGG | + | chr1_3:7800061-7800080 | None:intergenic | 15.0% |
| !!! | AATTTTGAAAATATTTCAAG+AGG | - | chr1_3:7800115-7800134 | Msa0101230:intron | 15.0% |
| !!! | TTTTTTATTATCAAGTTTGT+AGG | - | chr1_3:7800639-7800658 | Msa0101230:CDS | 15.0% |
| !!! | TTTATAAGACAATAACATTT+TGG | - | chr1_3:7800845-7800864 | Msa0101230:intron | 15.0% |
| !!! | TTATAAGACAATAACATTTT+GGG | - | chr1_3:7800846-7800865 | Msa0101230:intron | 15.0% |
| !!! | GTATTTTTATTCTAAGTATT+TGG | - | chr1_3:7801158-7801177 | Msa0101230:intron | 15.0% |
| !! | TTAATAGGCAAATTAAAATT+TGG | + | chr1_3:7801447-7801466 | None:intergenic | 15.0% |
| !! | AAATTGTGCAATATAATTAA+TGG | + | chr1_3:7801857-7801876 | None:intergenic | 15.0% |
| !!! | CAATCTTTTCATTTTAAAAA+GGG | - | chr1_3:7801971-7801990 | Msa0101230:intron | 15.0% |
| !!! | AAAGTCATAAGAATATTTTT+TGG | + | chr1_3:7802519-7802538 | None:intergenic | 15.0% |
| !! | AAAAACTTAAATCCCTAAAA+CGG | - | chr1_3:7799901-7799920 | Msa0101230:CDS | 20.0% |
| !!! | TTTTTCTAGATCTAAATGTT+AGG | - | chr1_3:7800003-7800022 | Msa0101230:CDS | 20.0% |
| !!! | TTTTCTAGATCTAAATGTTA+GGG | - | chr1_3:7800004-7800023 | Msa0101230:CDS | 20.0% |
| !!! | GTTTTTATTATCAAGTTTGT+TGG | - | chr1_3:7800526-7800545 | Msa0101230:CDS | 20.0% |
| !!! | TCTGGTAAATTATTTAGTTT+TGG | - | chr1_3:7800902-7800921 | Msa0101230:intron | 20.0% |
| !!! | TATTTTTACTGTTTCATCAT+CGG | - | chr1_3:7801225-7801244 | Msa0101230:intron | 20.0% |
| !!! | TCATTTTTACAAATGCAAAA+TGG | - | chr1_3:7801252-7801271 | Msa0101230:intron | 20.0% |
| !!! | CATTTTTACAAATGCAAAAT+GGG | - | chr1_3:7801253-7801272 | Msa0101230:intron | 20.0% |
| !!! | CTTTGTAATTTTATAAATGC+AGG | - | chr1_3:7801281-7801300 | Msa0101230:intron | 20.0% |
| !!! | TTTAGTGAATTTTCTCAATT+GGG | - | chr1_3:7801496-7801515 | Msa0101230:intron | 20.0% |
| !! | AAAGTTAATTACAAGTCATA+CGG | + | chr1_3:7801656-7801675 | None:intergenic | 20.0% |
| !! | ATTAACTTTGTAGTTATAAC+AGG | - | chr1_3:7801667-7801686 | Msa0101230:intron | 20.0% |
| !! | TAACATAAACACTCAAAATT+TGG | + | chr1_3:7801701-7801720 | None:intergenic | 20.0% |
| !!! | ACACACATTTTGTAAAATAA+GGG | + | chr1_3:7801813-7801832 | None:intergenic | 20.0% |
| !!! | AACACACATTTTGTAAAATA+AGG | + | chr1_3:7801814-7801833 | None:intergenic | 20.0% |
| !!! | CAATATAATTAATGGATGAT+AGG | + | chr1_3:7801849-7801868 | None:intergenic | 20.0% |
| !!! | CCTTTTTAAAATGAAAAGAT+TGG | + | chr1_3:7801973-7801992 | None:intergenic | 20.0% |
| !!! | CCAATCTTTTCATTTTAAAA+AGG | - | chr1_3:7801970-7801989 | Msa0101230:intron | 20.0% |
| !! | ATTTCAAAGTCAAATAATAG+AGG | - | chr1_3:7802231-7802250 | Msa0101230:intron | 20.0% |
| !!! | TCATAAGAATATTTTTTGGA+CGG | + | chr1_3:7802515-7802534 | None:intergenic | 20.0% |
| !!! | AAAATTTGTTTCATCTAGAA+GGG | + | chr1_3:7802763-7802782 | None:intergenic | 20.0% |
| !!! | TTTAAGTTTTTACAGAGACA+CGG | + | chr1_3:7799892-7799911 | None:intergenic | 25.0% |
| !!! | TTGTTTTATTTCCGCAAATT+TGG | - | chr1_3:7800345-7800364 | Msa0101230:CDS | 25.0% |
| ! | AAATCTTAACACCAAATTTG+CGG | + | chr1_3:7800359-7800378 | None:intergenic | 25.0% |
| !! | AAAACTCAAGGGTAAAATTT+TGG | - | chr1_3:7800387-7800406 | Msa0101230:CDS | 25.0% |
| !! | AAACTCAAGGGTAAAATTTT+GGG | - | chr1_3:7800388-7800407 | Msa0101230:CDS | 25.0% |
| ! | AATTAAACCCAAAAACACAT+TGG | - | chr1_3:7800752-7800771 | Msa0101230:CDS | 25.0% |
| ! | TATGATCCTTGTGTTATATT+TGG | - | chr1_3:7800785-7800804 | Msa0101230:intron | 25.0% |
| ! | CTTGAAACAAATCAACAAAT+TGG | - | chr1_3:7800994-7801013 | Msa0101230:intron | 25.0% |
| ! | TAAAAATACAGTGTTCAATG+TGG | + | chr1_3:7801147-7801166 | None:intergenic | 25.0% |
| !! | ACTATGCATTTTTATAAGTG+TGG | - | chr1_3:7801186-7801205 | Msa0101230:intron | 25.0% |
| !! | GTTTAGTGAATTTTCTCAAT+TGG | - | chr1_3:7801495-7801514 | Msa0101230:intron | 25.0% |
| !!! | GTTTTGTTTTTACGTATTAC+TGG | - | chr1_3:7801932-7801951 | Msa0101230:intron | 25.0% |
| ! | ATCATGTTCATGAGAAAAAT+AGG | + | chr1_3:7802037-7802056 | None:intergenic | 25.0% |
| ! | TCGATTACGAAATTCTTTAT+CGG | + | chr1_3:7802154-7802173 | None:intergenic | 25.0% |
| !!! | ATTTTTTGAATCTTGTGTCT+TGG | + | chr1_3:7802317-7802336 | None:intergenic | 25.0% |
| ! | ATTCAATAGTAATTCTGTTC+TGG | - | chr1_3:7802716-7802735 | Msa0101230:intron | 25.0% |
| !! | GAAAATTTGTTTCATCTAGA+AGG | + | chr1_3:7802764-7802783 | None:intergenic | 25.0% |
| ! | ACTTGTGAAATATGATGTAT+TGG | - | chr1_3:7802953-7802972 | Msa0101230:intron | 25.0% |
| ! | GAAATATGATGTATTGGAAT+TGG | - | chr1_3:7802959-7802978 | Msa0101230:intron | 25.0% |
| !! | AAATATTGGAAACGAGTTTT+GGG | - | chr1_3:7802998-7803017 | Msa0101230:intron | 25.0% |
| AGTGAATATTTACCTGACAA+GGG | + | chr1_3:7799848-7799867 | None:intergenic | 30.0% | |
| TAGTGAATATTTACCTGACA+AGG | + | chr1_3:7799849-7799868 | None:intergenic | 30.0% | |
| ! | TTAAGTTTTTACAGAGACAC+GGG | + | chr1_3:7799891-7799910 | None:intergenic | 30.0% |
| ATTGAATGTAATTGTCGTTG+TGG | - | chr1_3:7800219-7800238 | Msa0101230:CDS | 30.0% | |
| ATTTGCAATTGCAAAACTCA+AGG | - | chr1_3:7800375-7800394 | Msa0101230:CDS | 30.0% | |
| TTTGCAATTGCAAAACTCAA+GGG | - | chr1_3:7800376-7800395 | Msa0101230:CDS | 30.0% | |
| ! | AAAAACCTTACCTTTTGCTA+GGG | + | chr1_3:7800455-7800474 | None:intergenic | 30.0% |
| ! | AAAAAACCTTACCTTTTGCT+AGG | + | chr1_3:7800456-7800475 | None:intergenic | 30.0% |
| GATGAATATTGACAGAATGT+AGG | - | chr1_3:7800548-7800567 | Msa0101230:CDS | 30.0% | |
| CAAGTTTGTAGGATGAATAT+TGG | - | chr1_3:7800650-7800669 | Msa0101230:CDS | 30.0% | |
| ! | TTCTGAACCAATGTGTTTTT+GGG | + | chr1_3:7800762-7800781 | None:intergenic | 30.0% |
| ! | ATTCTGAACCAATGTGTTTT+TGG | + | chr1_3:7800763-7800782 | None:intergenic | 30.0% |
| GTACAACCAAATATAACACA+AGG | + | chr1_3:7800794-7800813 | None:intergenic | 30.0% | |
| CAAGGAAATTAAGAATGTTC+TGG | - | chr1_3:7800884-7800903 | Msa0101230:intron | 30.0% | |
| TCAAATATCACCAGTAACTT+TGG | - | chr1_3:7801119-7801138 | Msa0101230:intron | 30.0% | |
| TAGTGACAAAATAGCACTAT+CGG | + | chr1_3:7801361-7801380 | None:intergenic | 30.0% | |
| ! | TTTTCGTGAATGCTGTTAAT+AGG | + | chr1_3:7801462-7801481 | None:intergenic | 30.0% |
| ATACGTAACTTCTTTCAGTA+TGG | - | chr1_3:7801539-7801558 | Msa0101230:intron | 30.0% | |
| TCAAGTATGTCAATTGATGT+TGG | - | chr1_3:7801587-7801606 | Msa0101230:intron | 30.0% | |
| ! | TTTGAGTTTATGTCAAACAC+TGG | - | chr1_3:7801723-7801742 | Msa0101230:intron | 30.0% |
| TAAATGAGAGTTGAAGATGA+CGG | + | chr1_3:7801772-7801791 | None:intergenic | 30.0% | |
| ACGCAAAAGAAACAATTAGA+AGG | + | chr1_3:7801914-7801933 | None:intergenic | 30.0% | |
| !! | ATTTTAAAAAGGGTCCAGAT+GGG | - | chr1_3:7801981-7802000 | Msa0101230:intron | 30.0% |
| ATTACGAAATTCTTTATCGG+TGG | + | chr1_3:7802151-7802170 | None:intergenic | 30.0% | |
| CTCTTATACTTGAATGCAAA+AGG | - | chr1_3:7802262-7802281 | Msa0101230:intron | 30.0% | |
| ! | ATTGTGTTTTCCACATACTA+CGG | + | chr1_3:7802397-7802416 | None:intergenic | 30.0% |
| AAAACACAATCATGAGATGA+TGG | - | chr1_3:7802407-7802426 | Msa0101230:intron | 30.0% | |
| TCATCTCTTCCTCATTTAAA+CGG | + | chr1_3:7802461-7802480 | None:intergenic | 30.0% | |
| AGGTATAACAAGTCTATGAA+GGG | - | chr1_3:7802597-7802616 | Msa0101230:intron | 30.0% | |
| TCTGGCAAAATAGATATATC+TGG | + | chr1_3:7802675-7802694 | None:intergenic | 30.0% | |
| ! | TATATCTATTTTGCCAGAGT+TGG | - | chr1_3:7802677-7802696 | Msa0101230:intron | 30.0% |
| !!! | GATGTATTGGAATTGGTTTT+TGG | - | chr1_3:7802966-7802985 | Msa0101230:intron | 30.0% |
| TTTGGTGGAAAAGGAAATAT+TGG | - | chr1_3:7802984-7803003 | Msa0101230:intron | 30.0% | |
| ! | GAAATATTGGAAACGAGTTT+TGG | - | chr1_3:7802997-7803016 | Msa0101230:intron | 30.0% |
| ACAACTTGAAATGACAGTTT+AGG | - | chr1_3:7803056-7803075 | Msa0101230:five_prime_UTR | 30.0% | |
| CAACTTGAAATGACAGTTTA+GGG | - | chr1_3:7803057-7803076 | Msa0101230:five_prime_UTR | 30.0% | |
| AACTTGAAATGACAGTTTAG+GGG | - | chr1_3:7803058-7803077 | Msa0101230:five_prime_UTR | 30.0% | |
| ACTGAATCAAGAGAGGAAAA+GGG | + | chr1_3:7799712-7799731 | None:intergenic | 35.0% | |
| AACTGAATCAAGAGAGGAAA+AGG | + | chr1_3:7799713-7799732 | None:intergenic | 35.0% | |
| TCACTTAACTGAATCAAGAG+AGG | + | chr1_3:7799719-7799738 | None:intergenic | 35.0% | |
| AACGTTATCTGTGACTATGA+CGG | - | chr1_3:7799796-7799815 | Msa0101230:three_prime_UTR | 35.0% | |
| ! | TGTGAAACGAAACCGTTTTA+GGG | + | chr1_3:7799916-7799935 | None:intergenic | 35.0% |
| ! | ATGTGAAACGAAACCGTTTT+AGG | + | chr1_3:7799917-7799936 | None:intergenic | 35.0% |
| !!! | CCTTGTTTGTTTTTTCTTGC+CGG | - | chr1_3:7799946-7799965 | Msa0101230:CDS | 35.0% |
| TATTGACAGAATGTAGGTTC+TGG | - | chr1_3:7800554-7800573 | Msa0101230:CDS | 35.0% | |
| ! | TATTGGAAGAGTGTAGATTG+TGG | - | chr1_3:7800667-7800686 | Msa0101230:CDS | 35.0% |
| !!! | ACATTTTGGGTTCGTGAATT+TGG | - | chr1_3:7800859-7800878 | Msa0101230:intron | 35.0% |
| !! | TCTGATCGATCCTCTTATTT+TGG | - | chr1_3:7800927-7800946 | Msa0101230:intron | 35.0% |
| AACTCCTATGCCAAAATAAG+AGG | + | chr1_3:7800940-7800959 | None:intergenic | 35.0% | |
| !! | TAACTGCAATCAGCTTGTTA+AGG | - | chr1_3:7801018-7801037 | Msa0101230:intron | 35.0% |
| AGTGACAAAATAGCACTATC+GGG | + | chr1_3:7801360-7801379 | None:intergenic | 35.0% | |
| CTGAAAGAAGTTACGTATCA+AGG | + | chr1_3:7801537-7801556 | None:intergenic | 35.0% | |
| TGGTCTATTAGTAAACCTTC+CGG | - | chr1_3:7801607-7801626 | Msa0101230:intron | 35.0% | |
| TATTAGTAAACCTTCCGGTT+GGG | - | chr1_3:7801612-7801631 | Msa0101230:intron | 35.0% | |
| AAATGAGAGTTGAAGATGAC+GGG | + | chr1_3:7801771-7801790 | None:intergenic | 35.0% | |
| !! | CATTTTAAAAAGGGTCCAGA+TGG | - | chr1_3:7801980-7801999 | Msa0101230:intron | 35.0% |
| AGTAAGTACACATTCTGAGT+TGG | + | chr1_3:7802007-7802026 | None:intergenic | 35.0% | |
| CATGAACATGATACCATTTC+AGG | - | chr1_3:7802045-7802064 | Msa0101230:intron | 35.0% | |
| ! | ACATGATACCATTTCAGGTA+TGG | - | chr1_3:7802050-7802069 | Msa0101230:intron | 35.0% |
| AACAATACCAAACCCTAACT+TGG | + | chr1_3:7802211-7802230 | None:intergenic | 35.0% | |
| ATACTTGAATGCAAAAGGAG+TGG | - | chr1_3:7802267-7802286 | Msa0101230:intron | 35.0% | |
| AAGAAAAGAAGAGCTGATGA+TGG | - | chr1_3:7802540-7802559 | Msa0101230:intron | 35.0% | |
| AGAAAAGAAGAGCTGATGAT+GGG | - | chr1_3:7802541-7802560 | Msa0101230:intron | 35.0% | |
| AGATTTATAATGCACGTTCG+AGG | - | chr1_3:7802577-7802596 | Msa0101230:intron | 35.0% | |
| GAGGTATAACAAGTCTATGA+AGG | - | chr1_3:7802596-7802615 | Msa0101230:intron | 35.0% | |
| ! | TCAACCAACACTTCAGATTT+TGG | + | chr1_3:7802624-7802643 | None:intergenic | 35.0% |
| ATATCTGGTTGATCTTCCTT+TGG | + | chr1_3:7802660-7802679 | None:intergenic | 35.0% | |
| AATAGCTTTCCTAGAAACGA+TGG | - | chr1_3:7802874-7802893 | Msa0101230:intron | 35.0% | |
| AGAGAAGGAGAAGGAAAATT+GGG | - | chr1_3:7802913-7802932 | Msa0101230:intron | 35.0% | |
| !!! | GTATTGGAATTGGTTTTTGG+TGG | - | chr1_3:7802969-7802988 | Msa0101230:intron | 35.0% |
| !!! | GAATTGGTTTTTGGTGGAAA+AGG | - | chr1_3:7802975-7802994 | Msa0101230:intron | 35.0% |
| ACTTGAAATGACAGTTTAGG+GGG | - | chr1_3:7803059-7803078 | Msa0101230:five_prime_UTR | 35.0% | |
| TGAATCAAGAGAGGAAAAGG+GGG | + | chr1_3:7799710-7799729 | None:intergenic | 40.0% | |
| CTGAATCAAGAGAGGAAAAG+GGG | + | chr1_3:7799711-7799730 | None:intergenic | 40.0% | |
| ATTTACCTGACAAGGGTTGA+CGG | + | chr1_3:7799841-7799860 | None:intergenic | 40.0% | |
| CCGGCAAGAAAAAACAAACA+AGG | + | chr1_3:7799949-7799968 | None:intergenic | 40.0% | |
| !!! | TGTTTGTTTTTTCTTGCCGG+TGG | - | chr1_3:7799949-7799968 | Msa0101230:CDS | 40.0% |
| TGTAATTGTCGTTGTGGTGT+TGG | - | chr1_3:7800225-7800244 | Msa0101230:CDS | 40.0% | |
| AAACGACACATATGCAGGAA+GGG | + | chr1_3:7800422-7800441 | None:intergenic | 40.0% | |
| CAAAGAAACGACACATATGC+AGG | + | chr1_3:7800427-7800446 | None:intergenic | 40.0% | |
| CTTTGTTCTACCCTAGCAAA+AGG | - | chr1_3:7800442-7800461 | Msa0101230:CDS | 40.0% | |
| TTCTACCCTAGCAAAAGGTA+AGG | - | chr1_3:7800447-7800466 | Msa0101230:CDS | 40.0% | |
| !!! | CGATCCTCTTATTTTGGCAT+AGG | - | chr1_3:7800933-7800952 | Msa0101230:intron | 40.0% |
| ATATTTGATCAGCGCGTTCA+TGG | + | chr1_3:7801107-7801126 | None:intergenic | 40.0% | |
| CTATTAGTAAACCTTCCGGT+TGG | - | chr1_3:7801611-7801630 | Msa0101230:intron | 40.0% | |
| ! | TGATACCATTTCAGGTATGG+AGG | - | chr1_3:7802053-7802072 | Msa0101230:intron | 40.0% |
| AAATCAAGAGACTCATCGAC+TGG | + | chr1_3:7802114-7802133 | None:intergenic | 40.0% | |
| AAATAACCCCGCAATCTGAA+TGG | + | chr1_3:7802348-7802367 | None:intergenic | 40.0% | |
| TTAGAAGAACAGCCTATTGC+AGG | - | chr1_3:7802435-7802454 | Msa0101230:intron | 40.0% | |
| TCATTTAAACGGCCTGCAAT+AGG | + | chr1_3:7802450-7802469 | None:intergenic | 40.0% | |
| TATTGCAGGCCGTTTAAATG+AGG | - | chr1_3:7802449-7802468 | Msa0101230:intron | 40.0% | |
| !! | GAAGTGTTGGTTGATGATGA+CGG | - | chr1_3:7802630-7802649 | Msa0101230:intron | 40.0% |
| GGTATTTCACACATCCGAAT+TGG | - | chr1_3:7802737-7802756 | Msa0101230:intron | 40.0% | |
| TTCATCTAGAAGGGCCAATT+CGG | + | chr1_3:7802754-7802773 | None:intergenic | 40.0% | |
| CAGAGAAGGAGAAGGAAAAT+TGG | - | chr1_3:7802912-7802931 | Msa0101230:intron | 40.0% | |
| !!! | GAAACGAGTTTTGGGAGTTT+GGG | - | chr1_3:7803006-7803025 | Msa0101230:intron | 40.0% |
| GAATCAAGAGAGGAAAAGGG+GGG | + | chr1_3:7799709-7799728 | None:intergenic | 45.0% | |
| TGTCAGTGTCGTGTAGTGTT+CGG | + | chr1_3:7800164-7800183 | None:intergenic | 45.0% | |
| ! | TTCTGATGGAAGGGCATGTT+CGG | + | chr1_3:7800254-7800273 | None:intergenic | 45.0% |
| GAAACGACACATATGCAGGA+AGG | + | chr1_3:7800423-7800442 | None:intergenic | 45.0% | |
| ! | GGGTTCGTGAATTTGGTTCA+AGG | - | chr1_3:7800866-7800885 | Msa0101230:intron | 45.0% |
| TTGCATTGCCTGAACAGCTA+GGG | - | chr1_3:7801058-7801077 | Msa0101230:intron | 45.0% | |
| ! | TGTCATTTCCCTAGCTGTTC+AGG | + | chr1_3:7801069-7801088 | None:intergenic | 45.0% |
| CAATGTGGCTCCAAAGTTAC+TGG | + | chr1_3:7801132-7801151 | None:intergenic | 45.0% | |
| !!! | TACGGCATCGACTTTTCAAC+AGG | + | chr1_3:7801638-7801657 | None:intergenic | 45.0% |
| TTAGGCTTCAAACCAGCAGA+GGG | + | chr1_3:7802081-7802100 | None:intergenic | 45.0% | |
| GTGAGTGTCCATTCAGATTG+CGG | - | chr1_3:7802337-7802356 | Msa0101230:intron | 45.0% | |
| TGAGTGTCCATTCAGATTGC+GGG | - | chr1_3:7802338-7802357 | Msa0101230:intron | 45.0% | |
| !!! | ATTTTTTGCCCTCTGGCGTA+TGG | - | chr1_3:7802364-7802383 | Msa0101230:intron | 45.0% |
| !!! | TTTTTTGCCCTCTGGCGTAT+GGG | - | chr1_3:7802365-7802384 | Msa0101230:intron | 45.0% |
| TGGGAAGTTACCGTAGTATG+TGG | - | chr1_3:7802384-7802403 | Msa0101230:intron | 45.0% | |
| ! | GGGTCCAAAATCTGAAGTGT+TGG | - | chr1_3:7802617-7802636 | Msa0101230:intron | 45.0% |
| ! | TTTTCCTTCTCCTTCTCTGC+AGG | + | chr1_3:7802911-7802930 | None:intergenic | 45.0% |
| !!! | GGAAACGAGTTTTGGGAGTT+TGG | - | chr1_3:7803005-7803024 | Msa0101230:intron | 45.0% |
| ! | GGGAGTTTGGGATTGAGAAA+TGG | - | chr1_3:7803018-7803037 | Msa0101230:CDS | 45.0% |
| AACGAGGATTGGGTGCGATA+GGG | + | chr1_3:7799743-7799762 | None:intergenic | 50.0% | |
| CCGTCAGTAGAACGAGGATT+GGG | + | chr1_3:7799753-7799772 | None:intergenic | 50.0% | |
| CCCAATCCTCGTTCTACTGA+CGG | - | chr1_3:7799750-7799769 | Msa0101230:three_prime_UTR | 50.0% | |
| TTTCTCCGTCAACCCTTGTC+AGG | - | chr1_3:7799833-7799852 | Msa0101230:three_prime_UTR | 50.0% | |
| TACAGAGACACGGGAGAGAA+GGG | + | chr1_3:7799882-7799901 | None:intergenic | 50.0% | |
| TTACAGAGACACGGGAGAGA+AGG | + | chr1_3:7799883-7799902 | None:intergenic | 50.0% | |
| ACCCTAACAGCTTCTTCCAC+CGG | + | chr1_3:7799968-7799987 | None:intergenic | 50.0% | |
| CACGGACACTTCTGATGGAA+GGG | + | chr1_3:7800263-7800282 | None:intergenic | 50.0% | |
| !! | CATCAGAAGTGTCCGTGCTA+CGG | - | chr1_3:7800266-7800285 | Msa0101230:CDS | 50.0% |
| TTACTCCAACCTCCGTAGCA+CGG | + | chr1_3:7800281-7800300 | None:intergenic | 50.0% | |
| CTTGCATTGCCTGAACAGCT+AGG | - | chr1_3:7801057-7801076 | Msa0101230:intron | 50.0% | |
| ! | GACTTTTCAACAGGCCCAAC+CGG | + | chr1_3:7801629-7801648 | None:intergenic | 50.0% |
| ! | ACATTCTGAGTTGGCCCATC+TGG | + | chr1_3:7801998-7802017 | None:intergenic | 50.0% |
| GGGATCCTCCATACCTGAAA+TGG | + | chr1_3:7802061-7802080 | None:intergenic | 50.0% | |
| GTTAGGCTTCAAACCAGCAG+AGG | + | chr1_3:7802082-7802101 | None:intergenic | 50.0% | |
| ! | TCGACTGGTTCAGCACTGTT+AGG | + | chr1_3:7802099-7802118 | None:intergenic | 50.0% |
| ATCGAGATGACCTGCTGAAG+TGG | - | chr1_3:7802169-7802188 | Msa0101230:intron | 50.0% | |
| TCGAGATGACCTGCTGAAGT+GGG | - | chr1_3:7802170-7802189 | Msa0101230:intron | 50.0% | |
| GAGGTGAAGCAGCCAAGTTA+GGG | - | chr1_3:7802196-7802215 | Msa0101230:intron | 50.0% | |
| GAAGCAGCCAAGTTAGGGTT+TGG | - | chr1_3:7802201-7802220 | Msa0101230:intron | 50.0% | |
| GAGTGTCCATTCAGATTGCG+GGG | - | chr1_3:7802339-7802358 | Msa0101230:intron | 50.0% | |
| !!! | CGGGGTTATTTTTTGCCCTC+TGG | - | chr1_3:7802357-7802376 | Msa0101230:intron | 50.0% |
| GTAACTTCCCATACGCCAGA+GGG | + | chr1_3:7802375-7802394 | None:intergenic | 50.0% | |
| !! | TGATGATGACGGTGTGCCAA+AGG | - | chr1_3:7802641-7802660 | Msa0101230:intron | 50.0% |
| ACCTGAATCGCTTCCAACTC+TGG | + | chr1_3:7802693-7802712 | None:intergenic | 50.0% | |
| GAACGAGGATTGGGTGCGAT+AGG | + | chr1_3:7799744-7799763 | None:intergenic | 55.0% | |
| GCCGTCAGTAGAACGAGGAT+TGG | + | chr1_3:7799754-7799773 | None:intergenic | 55.0% | |
| TGCCGGTGGAAGAAGCTGTT+AGG | - | chr1_3:7799963-7799982 | Msa0101230:CDS | 55.0% | |
| GCCGGTGGAAGAAGCTGTTA+GGG | - | chr1_3:7799964-7799983 | Msa0101230:CDS | 55.0% | |
| GCACGGACACTTCTGATGGA+AGG | + | chr1_3:7800264-7800283 | None:intergenic | 55.0% | |
| CGTAGCACGGACACTTCTGA+TGG | + | chr1_3:7800268-7800287 | None:intergenic | 55.0% | |
| TTTCAACAGGCCCAACCGGA+AGG | + | chr1_3:7801625-7801644 | None:intergenic | 55.0% | |
| CGAGGTGAAGCAGCCAAGTT+AGG | - | chr1_3:7802195-7802214 | Msa0101230:intron | 55.0% | |
| GGTAACTTCCCATACGCCAG+AGG | + | chr1_3:7802376-7802395 | None:intergenic | 55.0% | |
| GCCAGAGTTGGAAGCGATTC+AGG | - | chr1_3:7802689-7802708 | Msa0101230:intron | 55.0% | |
| GACATGGCGCCATCGTTTCT+AGG | + | chr1_3:7802886-7802905 | None:intergenic | 55.0% | |
| TCCTTCTCTGCAGGAGGACA+TGG | + | chr1_3:7802902-7802921 | None:intergenic | 55.0% | |
| TCCTCCTGCAGAGAAGGAGA+AGG | - | chr1_3:7802904-7802923 | Msa0101230:intron | 55.0% | |
| TCCTTCTCCTTCTCTGCAGG+AGG | + | chr1_3:7802908-7802927 | None:intergenic | 55.0% | |
| CGTGTGCCGTCAGTAGAACG+AGG | + | chr1_3:7799759-7799778 | None:intergenic | 60.0% | |
| GAGACACGGGAGAGAAGGGA+AGG | + | chr1_3:7799878-7799897 | None:intergenic | 60.0% | |
| !! | CAGAAGTGTCCGTGCTACGG+AGG | - | chr1_3:7800269-7800288 | Msa0101230:CDS | 60.0% |
| AGTGTCCGTGCTACGGAGGT+TGG | - | chr1_3:7800273-7800292 | Msa0101230:CDS | 60.0% | |
| GGTATGGAGGATCCCTCTGC+TGG | - | chr1_3:7802066-7802085 | Msa0101230:intron | 60.0% | |
| ! | GACCTGCTGAAGTGGGTTCG+AGG | - | chr1_3:7802177-7802196 | Msa0101230:intron | 60.0% |
| CACCTCGAACCCACTTCAGC+AGG | + | chr1_3:7802182-7802201 | None:intergenic | 60.0% | |
| GCCATGTCCTCCTGCAGAGA+AGG | - | chr1_3:7802898-7802917 | Msa0101230:intron | 60.0% | |
| ACTGACGGCACACGCGACGC+AGG | - | chr1_3:7799765-7799784 | Msa0101230:three_prime_UTR | 70.0% | |
| GACGGCACACGCGACGCAGG+AGG | - | chr1_3:7799768-7799787 | Msa0101230:three_prime_UTR | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 7799699 | 7803164 | 7799699 | ID=Msa0101230;Name=Msa0101230 |
| chr1_3 | mRNA | 7799699 | 7803164 | 7799699 | ID=Msa0101230-mRNA-1;Parent=Msa0101230;Name=Msa0101230-mRNA-1;_AED=0.00;_eAED=0.00;_QI=113|1|1|1|0.5|0.33|3|197|279 |
| chr1_3 | exon | 7799699 | 7800048 | 7799699 | ID=Msa0101230-mRNA-1:exon:3078;Parent=Msa0101230-mRNA-1 |
| chr1_3 | exon | 7800153 | 7800796 | 7800153 | ID=Msa0101230-mRNA-1:exon:3077;Parent=Msa0101230-mRNA-1 |
| chr1_3 | exon | 7803009 | 7803164 | 7803009 | ID=Msa0101230-mRNA-1:exon:3076;Parent=Msa0101230-mRNA-1 |
| chr1_3 | five_prime_UTR | 7803052 | 7803164 | 7803052 | ID=Msa0101230-mRNA-1:five_prime_utr;Parent=Msa0101230-mRNA-1 |
| chr1_3 | CDS | 7803009 | 7803051 | 7803009 | ID=Msa0101230-mRNA-1:cds;Parent=Msa0101230-mRNA-1 |
| chr1_3 | CDS | 7800153 | 7800796 | 7800153 | ID=Msa0101230-mRNA-1:cds;Parent=Msa0101230-mRNA-1 |
| chr1_3 | CDS | 7799896 | 7800048 | 7799896 | ID=Msa0101230-mRNA-1:cds;Parent=Msa0101230-mRNA-1 |
| chr1_3 | three_prime_UTR | 7799699 | 7799895 | 7799699 | ID=Msa0101230-mRNA-1:three_prime_utr;Parent=Msa0101230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
