AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0101670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0101670 MtrunA17_Chr1g0154151 86.381 257 19 3 36 287 19 264 6.93e-159 445
Msa0101670 MtrunA17_Chr1g0154191 67.333 300 76 7 1 287 1 291 1.22e-134 385
Msa0101670 MtrunA17_Chr1g0154171 68.562 299 71 7 2 287 3 291 2.07e-131 377
Msa0101670 MtrunA17_Chr1g0154211 59.133 323 89 6 3 286 4 322 3.97e-126 365
Msa0101670 MtrunA17_Chr1g0154161 64.384 292 50 5 3 287 11 255 1.03e-122 353
Msa0101670 MtrunA17_Chr1g0154111 58.252 309 94 8 4 287 8 306 1.76e-110 332
Msa0101670 MtrunA17_Chr1g0154111 53.991 213 72 10 36 226 368 576 4.58e-53 182
Msa0101670 MtrunA17_Chr1g0154131 59.649 285 74 7 6 286 168 415 9.85e-108 321
Msa0101670 MtrunA17_Chr1g0154131 68.944 161 47 1 4 161 8 168 1.23e-71 228
Msa0101670 MtrunA17_Chr1g0154101 47.792 385 92 8 6 286 168 547 1.46e-99 310
Msa0101670 MtrunA17_Chr1g0154101 69.753 162 45 2 4 161 7 168 1.05e-71 236
Msa0101670 MtrunA17_Chr1g0154101 65.517 58 20 0 230 287 715 772 5.04e-19 87.0
Msa0101670 MtrunA17_Chr1g0154241 57.915 259 68 5 1 221 1 256 3.19e-92 274
Msa0101670 MtrunA17_Chr1g0154071 52.000 300 108 8 10 286 145 431 1.99e-87 269
Msa0101670 MtrunA17_Chr1g0154071 69.767 129 36 1 4 129 10 138 8.49e-57 190
Msa0101670 MtrunA17_Chr1g0154251 54.435 248 62 5 5 201 10 257 9.24e-82 255
Msa0101670 MtrunA17_Chr1g0154041 33.103 290 162 9 21 286 15 296 3.35e-34 130
Msa0101670 MtrunA17_Chr1g0154041 65.517 58 20 0 230 287 469 526 7.00e-18 83.6
Msa0101670 MtrunA17_Chr7g0233561 25.735 272 162 9 20 285 16 253 1.08e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0101670 AT4G33280.2 46.259 147 71 4 1 140 1 146 1.18e-36 132
Msa0101670 AT4G33280.1 31.834 289 159 9 1 281 1 259 1.50e-36 133
Msa0101670 AT4G33280.3 46.259 147 71 4 1 140 1 146 1.75e-35 132
Msa0101670 AT4G34400.2 33.721 86 54 1 35 117 29 114 8.37e-14 71.2
Msa0101670 AT4G34400.1 33.721 86 54 1 35 117 29 114 8.37e-14 71.2
Msa0101670 AT3G18990.1 26.199 271 171 11 25 271 5 270 3.41e-12 66.2
Msa0101670 AT3G18990.2 26.199 271 171 11 25 271 5 270 4.14e-12 66.2

Find 67 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACTCCACTAGGACCTTTA+AGG 0.178570 1_3:-8323186 None:intergenic
TTCATTATCATAACAAAATA+TGG 0.179614 1_3:-8324133 None:intergenic
CCAGAAAATGTGACCCTTAA+AGG 0.236805 1_3:+8323172 Msa0101670:CDS
AGTGGAGTTGTGTGGAATAT+AGG 0.300231 1_3:+8323199 Msa0101670:CDS
GTCTTCCTCGCTTCTTAGTC+TGG 0.318640 1_3:-8323603 None:intergenic
TCTGAAAGAGAATGATTTCC+TGG 0.324574 1_3:+8323288 Msa0101670:CDS
CTTGGGAAGAAGACATTTAC+TGG 0.331011 1_3:+8321742 Msa0101670:CDS
CTCATCTTCCTTCCCACTGA+TGG 0.337866 1_3:-8324077 None:intergenic
ATGGCCTTTGTTCGTGATAA+TGG 0.346658 1_3:+8324474 Msa0101670:three_prime_UTR
ACTGAGCGAAATGGATGAAC+TGG 0.384170 1_3:-8321773 None:intergenic
TGGAAGATAACAGCAGATCT+TGG 0.386589 1_3:+8321724 Msa0101670:CDS
GCATTAGCCGTGAACTTCTC+AGG 0.386743 1_3:-8323508 None:intergenic
AAGGCGCGTGTTGCTCCCAC+TGG 0.407965 1_3:-8324438 None:intergenic
GTGGAGTTGTGTGGAATATA+GGG 0.421556 1_3:+8323200 Msa0101670:CDS
ACAGGTGTAACCTCATTAAC+AGG 0.425807 1_3:-8323580 None:intergenic
GTCAATACTGTTCTTAATGC+TGG 0.435062 1_3:+8323469 Msa0101670:CDS
AGAAGCGCATGATTATGATT+TGG 0.435948 1_3:+8323657 Msa0101670:CDS
AAACTGAACAAAAGGACATC+AGG 0.443845 1_3:+8323416 Msa0101670:CDS
ACGTGAACCACTGATATTGC+AGG 0.449113 1_3:-8324158 None:intergenic
CGAAATGGATGAACTGGAAA+TGG 0.457630 1_3:-8321767 None:intergenic
CCTCGCTTCTTAGTCTGGAC+AGG 0.460020 1_3:-8323598 None:intergenic
GAATGCTGAAACTGAACAAA+AGG 0.469862 1_3:+8323408 Msa0101670:CDS
AAGCGTAACTTCTGTTCTGC+AGG 0.476446 1_3:-8324376 None:intergenic
GGAAGATAACAGCAGATCTT+GGG 0.478727 1_3:+8321725 Msa0101670:CDS
AACTCCACTAGGACCTTTAA+GGG 0.479312 1_3:-8323185 None:intergenic
GTGCTTCCCTCCCAATCAAC+CGG 0.484567 1_3:+8323541 Msa0101670:intron
GTAACTTCTGTTCTGCAGGC+AGG 0.484670 1_3:-8324372 None:intergenic
CTGTTTACTTCGTGGACGGT+TGG 0.484744 1_3:+8323242 Msa0101670:CDS
ACAAAAGCTTTCTCCTTGAA+AGG 0.498327 1_3:-8323350 None:intergenic
AGCGCATGATTATGATTTGG+TGG 0.510205 1_3:+8323660 Msa0101670:CDS
TGCTTCCCCTGAGAAGTTCA+CGG 0.513531 1_3:+8323501 Msa0101670:CDS
TATCAGTGGTTCACGTACTC+TGG 0.518096 1_3:+8324165 Msa0101670:CDS
CATAACAAAATATGGAAAAG+AGG 0.519268 1_3:-8324125 None:intergenic
AACCTCATTAACAGGCTGCT+TGG 0.519807 1_3:-8323572 None:intergenic
AGATAATACTGTTTACTTCG+TGG 0.532646 1_3:+8323234 Msa0101670:CDS
AACCAAGCAGCCTGTTAATG+AGG 0.535029 1_3:+8323570 Msa0101670:CDS
TTCCTGGTCTTTAAGTACAA+TGG 0.540256 1_3:+8323304 Msa0101670:intron
CATTAGCCGTGAACTTCTCA+GGG 0.540645 1_3:-8323507 None:intergenic
GCGTGTTGCTCCCACTGGGA+TGG 0.559302 1_3:-8324433 None:intergenic
TGTTGCTCCCACTGGGATGG+AGG 0.560821 1_3:-8324430 None:intergenic
TAACTTCTGTTCTGCAGGCA+GGG 0.567909 1_3:-8324371 None:intergenic
CGTGATAATGGCATCAATGT+TGG 0.573652 1_3:+8324486 Msa0101670:three_prime_UTR
ATATTCCACACAACTCCACT+AGG 0.578077 1_3:-8323196 None:intergenic
AATACTGTTTACTTCGTGGA+CGG 0.589633 1_3:+8323238 Msa0101670:CDS
TGATTTGGTGGCTTGCAACA+AGG 0.599399 1_3:+8323672 Msa0101670:CDS
TCCACAGAGGCATCCATCAG+TGG 0.602764 1_3:+8324064 Msa0101670:intron
GAAAAGAGGAGGTAAATGAG+TGG 0.607954 1_3:-8324111 None:intergenic
AGGCGCGTGTTGCTCCCACT+GGG 0.608236 1_3:-8324437 None:intergenic
AACTGAACAAAAGGACATCA+GGG 0.611117 1_3:+8323417 Msa0101670:CDS
CCACAGAGGCATCCATCAGT+GGG 0.612133 1_3:+8324065 Msa0101670:intron
AGAGGCATCCATCAGTGGGA+AGG 0.619891 1_3:+8324069 Msa0101670:intron
TGTGTAGCAGAGAAATGACA+TGG 0.620873 1_3:-8324345 None:intergenic
AAGTTGCTGTTCAAAATCAG+TGG 0.622618 1_3:-8321805 None:intergenic
AAGGTCCTAGTGGAGTTGTG+TGG 0.624686 1_3:+8323191 Msa0101670:CDS
AACAAAATATGGAAAAGAGG+AGG 0.626074 1_3:-8324122 None:intergenic
AAAAGAGGAGGTAAATGAGT+GGG 0.627707 1_3:-8324110 None:intergenic
GACTGTGACCTCCATCCCAG+TGG 0.630444 1_3:+8324422 Msa0101670:exon
GTGACCCTTAAAGGTCCTAG+TGG 0.630968 1_3:+8323181 Msa0101670:CDS
GATGCCATTATCACGAACAA+AGG 0.634653 1_3:-8324478 None:intergenic
GTTACGCTTCGAAATGCAAG+AGG 0.637695 1_3:+8324390 Msa0101670:CDS
ATGAAATCCTGCAATATCAG+TGG 0.639928 1_3:+8324151 Msa0101670:CDS
ACTGTGACCTCCATCCCAGT+GGG 0.647952 1_3:+8324423 Msa0101670:three_prime_UTR
GCTTGCAACAAGGAACACTC+AGG 0.676869 1_3:+8323682 Msa0101670:CDS
GCTGTTCAAAATCAGTGGTG+TGG 0.684363 1_3:-8321800 None:intergenic
CCTGTCCAGACTAAGAAGCG+AGG 0.723376 1_3:+8323598 Msa0101670:CDS
GTGTAGCAGAGAAATGACAT+GGG 0.727177 1_3:-8324344 None:intergenic
ATTAGCCGTGAACTTCTCAG+GGG 0.767259 1_3:-8323506 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTATTATTTTTATTTTTA+AGG - chr1_3:8322400-8322419 None:intergenic 0.0%
!!! ATAATTTAAGAGTTTTTTTA+AGG + chr1_3:8322424-8322443 Msa0101670:intron 10.0%
!!! TAATTTAAGAGTTTTTTTAA+GGG + chr1_3:8322425-8322444 Msa0101670:intron 10.0%
!!! TTTATAAAGTTTTCATATGT+GGG + chr1_3:8321890-8321909 Msa0101670:intron 15.0%
!!! TTGTTTTTAAATAATAGCTT+AGG + chr1_3:8322106-8322125 Msa0101670:intron 15.0%
!!! TAGTACTTTTTTCTTATAAA+AGG + chr1_3:8322318-8322337 Msa0101670:intron 15.0%
!!! GAAATTTATAATTTTATTGC+AGG + chr1_3:8323108-8323127 Msa0101670:intron 15.0%
!!! TGTTTATGTTGATTATATTA+TGG - chr1_3:8323811-8323830 None:intergenic 15.0%
!! TTCATTATCATAACAAAATA+TGG - chr1_3:8324136-8324155 None:intergenic 15.0%
!!! CTTTATAAAGTTTTCATATG+TGG + chr1_3:8321889-8321908 Msa0101670:intron 20.0%
!! AGATGCAAAATTTAAAAGAT+GGG - chr1_3:8322013-8322032 None:intergenic 20.0%
!! AAGATGCAAAATTTAAAAGA+TGG - chr1_3:8322014-8322033 None:intergenic 20.0%
!! TTAAATAATAGCTTAGGTAT+AGG + chr1_3:8322112-8322131 Msa0101670:intron 20.0%
!!! AAGAAAAAAGTACTAAAATG+CGG - chr1_3:8322313-8322332 None:intergenic 20.0%
!!! ATAAAAGCATGAATTTATCA+GGG - chr1_3:8322758-8322777 None:intergenic 20.0%
!! TAATGTATCATAATCTCAAA+TGG + chr1_3:8323086-8323105 Msa0101670:intron 20.0%
!!! AACTTTTACTATCTTGATTT+TGG + chr1_3:8323730-8323749 Msa0101670:intron 20.0%
!! GAGATAAAACAACATTATTT+GGG - chr1_3:8324225-8324244 None:intergenic 20.0%
!! AGAGATAAAACAACATTATT+TGG - chr1_3:8324226-8324245 None:intergenic 20.0%
!! CATAAGTTACTTAAAGATAA+GGG - chr1_3:8324252-8324271 None:intergenic 20.0%
!! ACATAAGTTACTTAAAGATA+AGG - chr1_3:8324253-8324272 None:intergenic 20.0%
!! TTTTTCTTTCATCAAGAACA+TGG - chr1_3:8321863-8321882 None:intergenic 25.0%
!!! TAAGGGCTTTTTAATTTAAG+AGG + chr1_3:8322442-8322461 Msa0101670:intron 25.0%
!! CATAAAAGCATGAATTTATC+AGG - chr1_3:8322759-8322778 None:intergenic 25.0%
!! CTGATAAATTCATGCTTTTA+TGG + chr1_3:8322757-8322776 Msa0101670:intron 25.0%
!!! GTAGTGTCGTTTTTAAATAA+TGG + chr1_3:8322805-8322824 Msa0101670:intron 25.0%
!! AAATTGTCTGAGAATGTTTT+AGG - chr1_3:8323139-8323158 None:intergenic 25.0%
!!! ACAGAATAATCAGCTTTTTT+CGG - chr1_3:8323631-8323650 None:intergenic 25.0%
!! CTTTTCTTCAAATATTCACA+AGG - chr1_3:8323855-8323874 None:intergenic 25.0%
! CATAACAAAATATGGAAAAG+AGG - chr1_3:8324128-8324147 None:intergenic 25.0%
!! TAAAATAAAGCATCACAAAG+GGG - chr1_3:8324200-8324219 None:intergenic 25.0%
!! GTAAAATAAAGCATCACAAA+GGG - chr1_3:8324201-8324220 None:intergenic 25.0%
!! AGTAAAATAAAGCATCACAA+AGG - chr1_3:8324202-8324221 None:intergenic 25.0%
! ATTCAATATTATACTCCAAC+TGG - chr1_3:8324303-8324322 None:intergenic 25.0%
! ATAAAGTTTTCATATGTGGG+TGG + chr1_3:8321893-8321912 Msa0101670:intron 30.0%
AAGGAAAAAAAATCTCAGCT+TGG + chr1_3:8322232-8322251 Msa0101670:intron 30.0%
!! AATTTTGATACAAGCAAGAC+AGG + chr1_3:8322474-8322493 Msa0101670:intron 30.0%
!!! TCCGTGCTATATTTTGAAAT+CGG + chr1_3:8322547-8322566 Msa0101670:intron 30.0%
AAACTTGAACCTAGTAAACT+TGG + chr1_3:8322573-8322592 Msa0101670:intron 30.0%
AACTTGAACCTAGTAAACTT+GGG + chr1_3:8322574-8322593 Msa0101670:intron 30.0%
CAAACACTAGAAAGATTGAA+AGG - chr1_3:8322707-8322726 None:intergenic 30.0%
! TTCATGCTTTTATGGCTTAA+AGG + chr1_3:8322765-8322784 Msa0101670:intron 30.0%
TGGCTTAAAGGAAATGAATA+AGG + chr1_3:8322777-8322796 Msa0101670:intron 30.0%
! AAGCTTTGTCGAATTTAACA+TGG - chr1_3:8322882-8322901 None:intergenic 30.0%
TAAACCCTAAACTCGATAAA+AGG - chr1_3:8322939-8322958 None:intergenic 30.0%
!! TTTTATCGAGTTTAGGGTTT+AGG + chr1_3:8322938-8322957 Msa0101670:intron 30.0%
GTACTTGTGATGATTAATAG+CGG + chr1_3:8323032-8323051 Msa0101670:intron 30.0%
AGATAATACTGTTTACTTCG+TGG + chr1_3:8323234-8323253 Msa0101670:CDS 30.0%
! TCCTATTTTGTTGGAAAATG+TGG + chr1_3:8323385-8323404 Msa0101670:CDS 30.0%
! CCTATTTTGTTGGAAAATGT+GGG + chr1_3:8323386-8323405 Msa0101670:CDS 30.0%
!!! ATTTTGGCTTTTCCCTTAAT+GGG + chr1_3:8323746-8323765 Msa0101670:intron 30.0%
AGTATAAAAGGACCCATTAA+GGG - chr1_3:8323761-8323780 None:intergenic 30.0%
! TGACTGAGAAAGAGTATAAA+AGG - chr1_3:8323773-8323792 None:intergenic 30.0%
TTCTTCAAATATTCACAAGG+AGG - chr1_3:8323852-8323871 None:intergenic 30.0%
AGACCTAGAATGAAATCAAA+GGG - chr1_3:8323906-8323925 None:intergenic 30.0%
! TAAGCTCTGACACAAATATA+AGG - chr1_3:8324008-8324027 None:intergenic 30.0%
AACAAAATATGGAAAAGAGG+AGG - chr1_3:8324125-8324144 None:intergenic 30.0%
AAGTTACTTAAAGATAAGGG+TGG - chr1_3:8324249-8324268 None:intergenic 30.0%
! AAGTTGCTGTTCAAAATCAG+TGG - chr1_3:8321808-8321827 None:intergenic 35.0%
!!! TCATGTTCATGCTACTTTTC+AGG + chr1_3:8321950-8321969 Msa0101670:intron 35.0%
TAATAGCTTAGGTATAGGCA+TGG + chr1_3:8322117-8322136 Msa0101670:intron 35.0%
ATCTCAGCTTGGTATATGAT+AGG + chr1_3:8322243-8322262 Msa0101670:intron 35.0%
TCTCAGCTTGGTATATGATA+GGG + chr1_3:8322244-8322263 Msa0101670:intron 35.0%
ATAAAAGGTCCAAAACTACG+CGG + chr1_3:8322333-8322352 Msa0101670:intron 35.0%
!!! GGGCTTTTTAATTTAAGAGG+TGG + chr1_3:8322445-8322464 Msa0101670:intron 35.0%
CCCGATTTCAAAATATAGCA+CGG - chr1_3:8322551-8322570 None:intergenic 35.0%
!!! CCGTGCTATATTTTGAAATC+GGG + chr1_3:8322548-8322567 Msa0101670:intron 35.0%
GCAATAAAACATAAACCCGT+GGG - chr1_3:8322636-8322655 None:intergenic 35.0%
TCACAGTTCTTAAGTAAGCA+TGG - chr1_3:8322658-8322677 None:intergenic 35.0%
TAGATAGTGTTTGCAGAACA+TGG - chr1_3:8322846-8322865 None:intergenic 35.0%
AATTCGACAAAGCTTTACGT+TGG + chr1_3:8322887-8322906 Msa0101670:intron 35.0%
CTAAACTCGATAAAAGGAGA+GGG - chr1_3:8322933-8322952 None:intergenic 35.0%
! CTCTCCTTTTATCGAGTTTA+GGG + chr1_3:8322932-8322951 Msa0101670:intron 35.0%
AATACTGTTTACTTCGTGGA+CGG + chr1_3:8323238-8323257 Msa0101670:CDS 35.0%
TCTGAAAGAGAATGATTTCC+TGG + chr1_3:8323288-8323307 Msa0101670:CDS 35.0%
! TTCCTGGTCTTTAAGTACAA+TGG + chr1_3:8323304-8323323 Msa0101670:intron 35.0%
!! TTCAACGTTTTGACCTTTCA+AGG + chr1_3:8323337-8323356 Msa0101670:CDS 35.0%
ACAAAAGCTTTCTCCTTGAA+AGG - chr1_3:8323353-8323372 None:intergenic 35.0%
! AGAAAGCTTTTGTGAGAAAG+CGG + chr1_3:8323360-8323379 Msa0101670:CDS 35.0%
! CCCACATTTTCCAACAAAAT+AGG - chr1_3:8323389-8323408 None:intergenic 35.0%
GAATGCTGAAACTGAACAAA+AGG + chr1_3:8323408-8323427 Msa0101670:CDS 35.0%
AAACTGAACAAAAGGACATC+AGG + chr1_3:8323416-8323435 Msa0101670:CDS 35.0%
AACTGAACAAAAGGACATCA+GGG + chr1_3:8323417-8323436 Msa0101670:CDS 35.0%
GTCAATACTGTTCTTAATGC+TGG + chr1_3:8323469-8323488 Msa0101670:CDS 35.0%
!!! GAATAATCAGCTTTTTTCGG+TGG - chr1_3:8323628-8323647 None:intergenic 35.0%
! AGAAGCGCATGATTATGATT+TGG + chr1_3:8323657-8323676 Msa0101670:CDS 35.0%
!!! GATTTTGGCTTTTCCCTTAA+TGG + chr1_3:8323745-8323764 Msa0101670:intron 35.0%
GAGTATAAAAGGACCCATTA+AGG - chr1_3:8323762-8323781 None:intergenic 35.0%
! TAGCCCTTTGATTTCATTCT+AGG + chr1_3:8323900-8323919 Msa0101670:intron 35.0%
GAGACCTAGAATGAAATCAA+AGG - chr1_3:8323907-8323926 None:intergenic 35.0%
CATTCTAGGTCTCAAAACTA+TGG + chr1_3:8323914-8323933 Msa0101670:intron 35.0%
!! AGACAAGTATCAGTTTGCTA+GGG - chr1_3:8323960-8323979 None:intergenic 35.0%
! TAGACAAGTATCAGTTTGCT+AGG - chr1_3:8323961-8323980 None:intergenic 35.0%
TAGCAAACTGATACTTGTCT+AGG + chr1_3:8323960-8323979 Msa0101670:intron 35.0%
AAAAGAGGAGGTAAATGAGT+GGG - chr1_3:8324113-8324132 None:intergenic 35.0%
ATGAAATCCTGCAATATCAG+TGG + chr1_3:8324151-8324170 Msa0101670:CDS 35.0%
TGGAAGATAACAGCAGATCT+TGG + chr1_3:8321724-8321743 Msa0101670:CDS 40.0%
GGAAGATAACAGCAGATCTT+GGG + chr1_3:8321725-8321744 Msa0101670:CDS 40.0%
CTTGGGAAGAAGACATTTAC+TGG + chr1_3:8321742-8321761 Msa0101670:CDS 40.0%
CGAAATGGATGAACTGGAAA+TGG - chr1_3:8321770-8321789 None:intergenic 40.0%
TGTGGAAAAACTGAGCGAAA+TGG - chr1_3:8321785-8321804 None:intergenic 40.0%
CGAATTCCATCACATTTGGA+GGG - chr1_3:8322171-8322190 None:intergenic 40.0%
! CCTCCAAATGTGATGGAATT+CGG + chr1_3:8322169-8322188 Msa0101670:intron 40.0%
! CTCCAAATGTGATGGAATTC+GGG + chr1_3:8322170-8322189 Msa0101670:intron 40.0%
AACCCGAATTCCATCACATT+TGG - chr1_3:8322175-8322194 None:intergenic 40.0%
! ATGTGATGGAATTCGGGTTT+AGG + chr1_3:8322176-8322195 Msa0101670:intron 40.0%
! TTGTTGAAACCGCGTAGTTT+TGG - chr1_3:8322345-8322364 None:intergenic 40.0%
TGATACAAGCAAGACAGGAT+CGG + chr1_3:8322479-8322498 Msa0101670:intron 40.0%
TTCAAAATATAGCACGGACG+CGG - chr1_3:8322545-8322564 None:intergenic 40.0%
GGCAATAAAACATAAACCCG+TGG - chr1_3:8322637-8322656 None:intergenic 40.0%
CCTAAACTCGATAAAAGGAG+AGG - chr1_3:8322934-8322953 None:intergenic 40.0%
! CCTCTCCTTTTATCGAGTTT+AGG + chr1_3:8322931-8322950 Msa0101670:intron 40.0%
GATGATTCAGTCACGAACAT+AGG + chr1_3:8322966-8322985 Msa0101670:intron 40.0%
!! CCTTTAAGGGTCACATTTTC+TGG - chr1_3:8323175-8323194 None:intergenic 40.0%
CCAGAAAATGTGACCCTTAA+AGG + chr1_3:8323172-8323191 Msa0101670:CDS 40.0%
AACTCCACTAGGACCTTTAA+GGG - chr1_3:8323188-8323207 None:intergenic 40.0%
ATATTCCACACAACTCCACT+AGG - chr1_3:8323199-8323218 None:intergenic 40.0%
AGTGGAGTTGTGTGGAATAT+AGG + chr1_3:8323199-8323218 Msa0101670:CDS 40.0%
GTGGAGTTGTGTGGAATATA+GGG + chr1_3:8323200-8323219 Msa0101670:CDS 40.0%
CACCATTGTACTTAAAGACC+AGG - chr1_3:8323309-8323328 None:intergenic 40.0%
! AAAGCGGCTTCCTATTTTGT+TGG + chr1_3:8323376-8323395 Msa0101670:CDS 40.0%
! GGTTCTTTTTCCGGTTGATT+GGG - chr1_3:8323554-8323573 None:intergenic 40.0%
! TGGTTCTTTTTCCGGTTGAT+TGG - chr1_3:8323555-8323574 None:intergenic 40.0%
ACAGGTGTAACCTCATTAAC+AGG - chr1_3:8323583-8323602 None:intergenic 40.0%
! AGCGCATGATTATGATTTGG+TGG + chr1_3:8323660-8323679 Msa0101670:CDS 40.0%
TGAACTGTTCAATTCCACAG+AGG + chr1_3:8324051-8324070 Msa0101670:intron 40.0%
GAAAAGAGGAGGTAAATGAG+TGG - chr1_3:8324114-8324133 None:intergenic 40.0%
GCTTGAGAAACTAATCCAGT+TGG + chr1_3:8324285-8324304 Msa0101670:intron 40.0%
GTGTAGCAGAGAAATGACAT+GGG - chr1_3:8324347-8324366 None:intergenic 40.0%
TGTGTAGCAGAGAAATGACA+TGG - chr1_3:8324348-8324367 None:intergenic 40.0%
ATGGCCTTTGTTCGTGATAA+TGG + chr1_3:8324474-8324493 Msa0101670:three_prime_UTR 40.0%
GATGCCATTATCACGAACAA+AGG - chr1_3:8324481-8324500 None:intergenic 40.0%
!! CGTGATAATGGCATCAATGT+TGG + chr1_3:8324486-8324505 Msa0101670:three_prime_UTR 40.0%
ACTGAGCGAAATGGATGAAC+TGG - chr1_3:8321776-8321795 None:intergenic 45.0%
GCTGTTCAAAATCAGTGGTG+TGG - chr1_3:8321803-8321822 None:intergenic 45.0%
CTTAGGTATAGGCATGGCAA+CGG + chr1_3:8322123-8322142 Msa0101670:intron 45.0%
TTAGGTATAGGCATGGCAAC+GGG + chr1_3:8322124-8322143 Msa0101670:intron 45.0%
TCCATCACATTTGGAGGGAA+AGG - chr1_3:8322166-8322185 None:intergenic 45.0%
CCGAATTCCATCACATTTGG+AGG - chr1_3:8322172-8322191 None:intergenic 45.0%
TTCCTTCACCCCGTTGAATT+CGG - chr1_3:8322218-8322237 None:intergenic 45.0%
ATGATAGGGTTCAAGCATCC+CGG + chr1_3:8322258-8322277 Msa0101670:intron 45.0%
ACTACGCGGTTTCAACAATC+TGG + chr1_3:8322347-8322366 Msa0101670:intron 45.0%
GATACAAGCAAGACAGGATC+GGG + chr1_3:8322480-8322499 Msa0101670:intron 45.0%
ATACAAGCAAGACAGGATCG+GGG + chr1_3:8322481-8322500 Msa0101670:intron 45.0%
TGGGGAAACCCAAGTTTACT+AGG - chr1_3:8322585-8322604 None:intergenic 45.0%
TTGGGTTTCCCCATCAAAGT+CGG + chr1_3:8322592-8322611 Msa0101670:intron 45.0%
CAACTCCACTAGGACCTTTA+AGG - chr1_3:8323189-8323208 None:intergenic 45.0%
ATTAGCCGTGAACTTCTCAG+GGG - chr1_3:8323509-8323528 None:intergenic 45.0%
CATTAGCCGTGAACTTCTCA+GGG - chr1_3:8323510-8323529 None:intergenic 45.0%
! CTTTTTCCGGTTGATTGGGA+GGG - chr1_3:8323550-8323569 None:intergenic 45.0%
! TCTTTTTCCGGTTGATTGGG+AGG - chr1_3:8323551-8323570 None:intergenic 45.0%
!! AGGCTGCTTGGTTCTTTTTC+CGG - chr1_3:8323563-8323582 None:intergenic 45.0%
AACCAAGCAGCCTGTTAATG+AGG + chr1_3:8323570-8323589 Msa0101670:CDS 45.0%
AACCTCATTAACAGGCTGCT+TGG - chr1_3:8323575-8323594 None:intergenic 45.0%
!! TGATTTGGTGGCTTGCAACA+AGG + chr1_3:8323672-8323691 Msa0101670:CDS 45.0%
ACGTGAACCACTGATATTGC+AGG - chr1_3:8324161-8324180 None:intergenic 45.0%
TATCAGTGGTTCACGTACTC+TGG + chr1_3:8324165-8324184 Msa0101670:CDS 45.0%
TAACTTCTGTTCTGCAGGCA+GGG - chr1_3:8324374-8324393 None:intergenic 45.0%
AAGCGTAACTTCTGTTCTGC+AGG - chr1_3:8324379-8324398 None:intergenic 45.0%
GTTACGCTTCGAAATGCAAG+AGG + chr1_3:8324390-8324409 Msa0101670:CDS 45.0%
TAGGTATAGGCATGGCAACG+GGG + chr1_3:8322125-8322144 Msa0101670:intron 50.0%
GCCTTTCCCTCCAAATGTGA+TGG + chr1_3:8322162-8322181 Msa0101670:intron 50.0%
TTTGCCGTCCCCGAATTCAA+CGG + chr1_3:8322205-8322224 Msa0101670:intron 50.0%
TCCTTCACCCCGTTGAATTC+GGG - chr1_3:8322217-8322236 None:intergenic 50.0%
TCCAAGTTCATGTCAGGGTG+GGG - chr1_3:8322290-8322309 None:intergenic 50.0%
GTCCAAGTTCATGTCAGGGT+GGG - chr1_3:8322291-8322310 None:intergenic 50.0%
TGCGGTCCAAGTTCATGTCA+GGG - chr1_3:8322295-8322314 None:intergenic 50.0%
ATGCGGTCCAAGTTCATGTC+AGG - chr1_3:8322296-8322315 None:intergenic 50.0%
AATATAGCACGGACGCGGAT+GGG - chr1_3:8322540-8322559 None:intergenic 50.0%
AAATATAGCACGGACGCGGA+TGG - chr1_3:8322541-8322560 None:intergenic 50.0%
TGGGTTTCCCCATCAAAGTC+GGG + chr1_3:8322593-8322612 Msa0101670:intron 50.0%
GTGACCCTTAAAGGTCCTAG+TGG + chr1_3:8323181-8323200 Msa0101670:CDS 50.0%
AAGGTCCTAGTGGAGTTGTG+TGG + chr1_3:8323191-8323210 Msa0101670:CDS 50.0%
CTGTTTACTTCGTGGACGGT+TGG + chr1_3:8323242-8323261 Msa0101670:CDS 50.0%
TGCTTCCCCTGAGAAGTTCA+CGG + chr1_3:8323501-8323520 Msa0101670:CDS 50.0%
GCATTAGCCGTGAACTTCTC+AGG - chr1_3:8323511-8323530 None:intergenic 50.0%
GTCTTCCTCGCTTCTTAGTC+TGG - chr1_3:8323606-8323625 None:intergenic 50.0%
GCTTGCAACAAGGAACACTC+AGG + chr1_3:8323682-8323701 Msa0101670:CDS 50.0%
CTCATCTTCCTTCCCACTGA+TGG - chr1_3:8324080-8324099 None:intergenic 50.0%
GTAACTTCTGTTCTGCAGGC+AGG - chr1_3:8324375-8324394 None:intergenic 50.0%
GTTGAATTCGGGGACGGCAA+AGG - chr1_3:8322206-8322225 None:intergenic 55.0%
TTGCCGTCCCCGAATTCAAC+GGG + chr1_3:8322206-8322225 Msa0101670:intron 55.0%
CCTTCACCCCGTTGAATTCG+GGG - chr1_3:8322216-8322235 None:intergenic 55.0%
TTCATGTCAGGGTGGGGATG+GGG - chr1_3:8322284-8322303 None:intergenic 55.0%
GTTCATGTCAGGGTGGGGAT+GGG - chr1_3:8322285-8322304 None:intergenic 55.0%
AGTTCATGTCAGGGTGGGGA+TGG - chr1_3:8322286-8322305 None:intergenic 55.0%
TCCCCACCCTGACATGAACT+TGG + chr1_3:8322286-8322305 Msa0101670:intron 55.0%
GGTCCAAGTTCATGTCAGGG+TGG - chr1_3:8322292-8322311 None:intergenic 55.0%
AAGCAAGACAGGATCGGGGA+TGG + chr1_3:8322485-8322504 Msa0101670:intron 55.0%
! GACAGGATCGGGGATGGATT+CGG + chr1_3:8322491-8322510 Msa0101670:intron 55.0%
! ACAGGATCGGGGATGGATTC+GGG + chr1_3:8322492-8322511 Msa0101670:intron 55.0%
GGGTTTCCCCATCAAAGTCG+GGG + chr1_3:8322594-8322613 Msa0101670:intron 55.0%
TTTCCCCATCAAAGTCGGGG+CGG + chr1_3:8322597-8322616 Msa0101670:intron 55.0%
CGGGTTCATGTTGGTACCCA+CGG + chr1_3:8322617-8322636 Msa0101670:intron 55.0%
GGGTTCATGTTGGTACCCAC+GGG + chr1_3:8322618-8322637 Msa0101670:intron 55.0%
GTGCTTCCCTCCCAATCAAC+CGG + chr1_3:8323541-8323560 Msa0101670:intron 55.0%
CCTCGCTTCTTAGTCTGGAC+AGG - chr1_3:8323601-8323620 None:intergenic 55.0%
CCTGTCCAGACTAAGAAGCG+AGG + chr1_3:8323598-8323617 Msa0101670:CDS 55.0%
!! TCCACAGAGGCATCCATCAG+TGG + chr1_3:8324064-8324083 Msa0101670:intron 55.0%
!! CCACAGAGGCATCCATCAGT+GGG + chr1_3:8324065-8324084 Msa0101670:intron 55.0%
!! AGAGGCATCCATCAGTGGGA+AGG + chr1_3:8324069-8324088 Msa0101670:intron 55.0%
ACTGTGACCTCCATCCCAGT+GGG + chr1_3:8324423-8324442 Msa0101670:three_prime_UTR 55.0%
! GAGCAACACGCGCCTTTTGT+GGG + chr1_3:8324445-8324464 Msa0101670:three_prime_UTR 55.0%
! AGCAACACGCGCCTTTTGTG+GGG + chr1_3:8324446-8324465 Msa0101670:three_prime_UTR 55.0%
GTATAGGCATGGCAACGGGG+CGG + chr1_3:8322128-8322147 Msa0101670:intron 60.0%
TATAGGCATGGCAACGGGGC+GGG + chr1_3:8322129-8322148 Msa0101670:intron 60.0%
TGCCGTCCCCGAATTCAACG+GGG + chr1_3:8322207-8322226 Msa0101670:intron 60.0%
CACCCCGTTGAATTCGGGGA+CGG - chr1_3:8322212-8322231 None:intergenic 60.0%
CCCCGAATTCAACGGGGTGA+AGG + chr1_3:8322213-8322232 Msa0101670:intron 60.0%
! GATCGGGGATGGATTCGGGA+TGG + chr1_3:8322496-8322515 Msa0101670:intron 60.0%
! ACGGACGCGGATGGGTATTG+GGG - chr1_3:8322532-8322551 None:intergenic 60.0%
CACGGACGCGGATGGGTATT+GGG - chr1_3:8322533-8322552 None:intergenic 60.0%
TTCCCCATCAAAGTCGGGGC+GGG + chr1_3:8322598-8322617 Msa0101670:intron 60.0%
AACCCGCCCCGACTTTGATG+GGG - chr1_3:8322603-8322622 None:intergenic 60.0%
GAACCCGCCCCGACTTTGAT+GGG - chr1_3:8322604-8322623 None:intergenic 60.0%
TGAACCCGCCCCGACTTTGA+TGG - chr1_3:8322605-8322624 None:intergenic 60.0%
! AAGTCGGGGCGGGTTCATGT+TGG + chr1_3:8322608-8322627 Msa0101670:intron 60.0%
! CCCACTGATGGATGCCTCTG+TGG - chr1_3:8324068-8324087 None:intergenic 60.0%
GACTGTGACCTCCATCCCAG+TGG + chr1_3:8324422-8324441 Msa0101670:exon 60.0%
TGTTGCTCCCACTGGGATGG+AGG - chr1_3:8324433-8324452 None:intergenic 60.0%
! GGAGCAACACGCGCCTTTTG+TGG + chr1_3:8324444-8324463 Msa0101670:three_prime_UTR 60.0%
! GCAACACGCGCCTTTTGTGG+GGG + chr1_3:8324447-8324466 Msa0101670:three_prime_UTR 60.0%
! CGCCTTTTGTGGGGGATGGA+TGG + chr1_3:8324455-8324474 Msa0101670:three_prime_UTR 60.0%
GGCCATCCATCCCCCACAAA+AGG - chr1_3:8324460-8324479 None:intergenic 60.0%
ATAGGCATGGCAACGGGGCG+GGG + chr1_3:8322130-8322149 Msa0101670:intron 65.0%
GCACGGACGCGGATGGGTAT+TGG - chr1_3:8322534-8322553 None:intergenic 65.0%
! GCGTGTTGCTCCCACTGGGA+TGG - chr1_3:8324436-8324455 None:intergenic 65.0%
! AGGCGCGTGTTGCTCCCACT+GGG - chr1_3:8324440-8324459 None:intergenic 65.0%
! AAGGCGCGTGTTGCTCCCAC+TGG - chr1_3:8324441-8324460 None:intergenic 65.0%
! CACGCGCCTTTTGTGGGGGA+TGG + chr1_3:8324451-8324470 Msa0101670:three_prime_UTR 65.0%
TGTCAGGGTGGGGATGGGGC+CGG - chr1_3:8322280-8322299 None:intergenic 70.0%
GTCAGGGTGGGGATGGGGCC+GGG - chr1_3:8322279-8322298 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 8321723 8324542 8321723 ID=Msa0101670;Name=Msa0101670
chr1_3 mRNA 8321723 8324542 8321723 ID=Msa0101670-mRNA-1;Parent=Msa0101670;Name=Msa0101670-mRNA-1;_AED=0.43;_eAED=0.43;_QI=0|0.4|0.33|1|0.6|0.33|6|120|287
chr1_3 exon 8321723 8321827 8321723 ID=Msa0101670-mRNA-1:exon:3306;Parent=Msa0101670-mRNA-1
chr1_3 exon 8323130 8323309 8323130 ID=Msa0101670-mRNA-1:exon:3307;Parent=Msa0101670-mRNA-1
chr1_3 exon 8323319 8323535 8323319 ID=Msa0101670-mRNA-1:exon:3308;Parent=Msa0101670-mRNA-1
chr1_3 exon 8323542 8323703 8323542 ID=Msa0101670-mRNA-1:exon:3309;Parent=Msa0101670-mRNA-1
chr1_3 exon 8324071 8324186 8324071 ID=Msa0101670-mRNA-1:exon:3310;Parent=Msa0101670-mRNA-1
chr1_3 exon 8324339 8324542 8324339 ID=Msa0101670-mRNA-1:exon:3311;Parent=Msa0101670-mRNA-1
chr1_3 CDS 8321723 8321827 8321723 ID=Msa0101670-mRNA-1:cds;Parent=Msa0101670-mRNA-1
chr1_3 CDS 8323130 8323309 8323130 ID=Msa0101670-mRNA-1:cds;Parent=Msa0101670-mRNA-1
chr1_3 CDS 8323319 8323535 8323319 ID=Msa0101670-mRNA-1:cds;Parent=Msa0101670-mRNA-1
chr1_3 CDS 8323542 8323703 8323542 ID=Msa0101670-mRNA-1:cds;Parent=Msa0101670-mRNA-1
chr1_3 CDS 8324071 8324186 8324071 ID=Msa0101670-mRNA-1:cds;Parent=Msa0101670-mRNA-1
chr1_3 CDS 8324339 8324422 8324339 ID=Msa0101670-mRNA-1:cds;Parent=Msa0101670-mRNA-1
chr1_3 three_prime_UTR 8324423 8324542 8324423 ID=Msa0101670-mRNA-1:three_prime_utr;Parent=Msa0101670-mRNA-1
Gene Sequence

>Msa0101670

ATGGAAGATAACAGCAGATCTTGGGAAGAAGACATTTACTGGAACCATTTCCAGTTCATCCATTTCGCTCAGTTTTTCCACACCACTGATTTTGAACAGCAACTTGCACTTCCTAAAACATTCTCAGACAATTTAAAGAAGAAGTTGCCAGAAAATGTGACCCTTAAAGGTCCTAGTGGAGTTGTGTGGAATATAGGGCTGAAAACTAGAGATAATACTGTTTACTTCGTGGACGGTTGGCGTCAGTTTGCAAGAGATCATTTTCTGAAAGAGAATGATTTCCTGTACAATGGTGAATCACTATTCAACGTTTTGACCTTTCAAGGAGAAAGCTTTTGTGAGAAAGCGGCTTCCTATTTTGTTGGAAAATGTGGGAATGCTGAAACTGAACAAAAGGACATCAGGGAGAACGAAACAAACAAGTCTGTTGAAGAAGTCAATACTGTTCTTAATGCTGGTGTTGAGTCTGCTTCCCCTGAGAAGTTCACGGCTAATGCAGTCATGCTTCCCTCCCAATCAACCGGAAAAAGAACCAAGCAGCCTGTTAATGAGGTTACACCTGTCCAGACTAAGAAGCGAGGAAGACCACCGAAAAAAGCTGATTATTCTGTTGAGAGAGAAGCGCATGATTATGATTTGGTGGCTTGCAACAAGGAACACTCAGAGGCATCCATCAGTGGGAAGGAAGATGAGAAAAAGATAGCCCACTCATTTACCTCCTCTTTTCCATATTTTGTTATGATAATGAAATCCTGCAATATCAGTGGTTCACGTACTCTGAGAATCCCATGTCATTTCTCTGCTACACATCTCCCTGCCTGCAGAACAGAAGTTACGCTTCGAAATGCAAGAGGCGAATGTTAG

Protein sequence

>Msa0101670

MEDNSRSWEEDIYWNHFQFIHFAQFFHTTDFEQQLALPKTFSDNLKKKLPENVTLKGPSGVVWNIGLKTRDNTVYFVDGWRQFARDHFLKENDFLYNGESLFNVLTFQGESFCEKAASYFVGKCGNAETEQKDIRENETNKSVEEVNTVLNAGVESASPEKFTANAVMLPSQSTGKRTKQPVNEVTPVQTKKRGRPPKKADYSVEREAHDYDLVACNKEHSEASISGKEDEKKIAHSFTSSFPYFVMIMKSCNISGSRTLRIPCHFSATHLPACRTEVTLRNARGEC*