Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0101730 | XP_003589271.2 | 91.451 | 386 | 27 | 3 | 1 | 381 | 2 | 386 | 0.0 | 724 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0101730 | sp|Q8RYD1|REM16_ARATH | 31.124 | 347 | 191 | 7 | 3 | 344 | 2 | 305 | 1.88e-48 | 170 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0101730 | G7I4K5 | 91.451 | 386 | 27 | 3 | 1 | 381 | 1 | 385 | 0.0 | 724 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0101730 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0101730 | MtrunA17_Chr1g0154111 | 90.786 | 369 | 28 | 3 | 1 | 364 | 1 | 368 | 0.0 | 689 |
| Msa0101730 | MtrunA17_Chr1g0154111 | 53.419 | 234 | 50 | 6 | 40 | 239 | 368 | 576 | 4.19e-62 | 209 |
| Msa0101730 | MtrunA17_Chr1g0154211 | 68.123 | 389 | 100 | 4 | 9 | 373 | 6 | 394 | 0.0 | 531 |
| Msa0101730 | MtrunA17_Chr1g0154171 | 60.263 | 380 | 118 | 8 | 9 | 380 | 6 | 360 | 2.34e-149 | 426 |
| Msa0101730 | MtrunA17_Chr1g0154131 | 63.037 | 349 | 83 | 8 | 10 | 357 | 168 | 471 | 2.95e-146 | 423 |
| Msa0101730 | MtrunA17_Chr1g0154131 | 74.405 | 168 | 43 | 0 | 1 | 168 | 1 | 168 | 8.97e-86 | 268 |
| Msa0101730 | MtrunA17_Chr1g0154191 | 56.599 | 394 | 126 | 10 | 8 | 381 | 4 | 372 | 3.26e-140 | 403 |
| Msa0101730 | MtrunA17_Chr1g0154071 | 54.960 | 373 | 116 | 9 | 14 | 360 | 145 | 491 | 4.50e-120 | 357 |
| Msa0101730 | MtrunA17_Chr1g0154071 | 79.699 | 133 | 27 | 0 | 8 | 140 | 10 | 142 | 1.34e-70 | 229 |
| Msa0101730 | MtrunA17_Chr1g0154161 | 51.872 | 374 | 118 | 9 | 9 | 381 | 13 | 325 | 3.29e-116 | 340 |
| Msa0101730 | MtrunA17_Chr1g0154151 | 54.655 | 333 | 113 | 7 | 40 | 363 | 19 | 322 | 6.17e-112 | 330 |
| Msa0101730 | MtrunA17_Chr1g0154241 | 63.806 | 268 | 66 | 4 | 9 | 249 | 5 | 268 | 1.37e-109 | 322 |
| Msa0101730 | MtrunA17_Chr1g0154251 | 45.478 | 387 | 154 | 9 | 9 | 341 | 10 | 393 | 7.81e-98 | 300 |
| Msa0101730 | MtrunA17_Chr1g0154101 | 79.290 | 169 | 33 | 2 | 1 | 168 | 1 | 168 | 9.84e-87 | 280 |
| Msa0101730 | MtrunA17_Chr1g0154101 | 60.494 | 243 | 77 | 5 | 10 | 234 | 168 | 409 | 5.59e-83 | 270 |
| Msa0101730 | MtrunA17_Chr1g0154101 | 57.672 | 189 | 57 | 2 | 201 | 366 | 424 | 612 | 4.23e-57 | 199 |
| Msa0101730 | MtrunA17_Chr1g0154101 | 30.978 | 368 | 216 | 10 | 23 | 380 | 503 | 842 | 9.92e-38 | 144 |
| Msa0101730 | MtrunA17_Chr1g0154041 | 43.575 | 358 | 175 | 7 | 25 | 366 | 15 | 361 | 2.38e-79 | 254 |
| Msa0101730 | MtrunA17_Chr1g0154041 | 47.973 | 148 | 68 | 1 | 234 | 381 | 458 | 596 | 1.25e-37 | 143 |
| Msa0101730 | MtrunA17_Chr1g0154121 | 73.267 | 101 | 25 | 1 | 283 | 381 | 1 | 101 | 6.57e-45 | 150 |
| Msa0101730 | MtrunA17_Chr7g0233561 | 27.052 | 329 | 191 | 8 | 26 | 348 | 19 | 304 | 5.06e-24 | 101 |
| Msa0101730 | MtrunA17_Chr6g0464121 | 47.312 | 93 | 49 | 0 | 288 | 380 | 123 | 215 | 1.99e-19 | 88.2 |
| Msa0101730 | MtrunA17_Chr3g0131891 | 24.309 | 362 | 201 | 13 | 24 | 370 | 17 | 320 | 2.81e-19 | 87.8 |
| Msa0101730 | MtrunA17_Chr1g0208771 | 24.405 | 336 | 208 | 10 | 41 | 370 | 13 | 308 | 2.28e-17 | 83.6 |
| Msa0101730 | MtrunA17_Chr8g0390841 | 24.079 | 353 | 223 | 14 | 23 | 370 | 36 | 348 | 8.36e-17 | 82.0 |
| Msa0101730 | MtrunA17_Chr1g0162441 | 39.773 | 88 | 53 | 0 | 28 | 115 | 10 | 97 | 3.27e-12 | 67.4 |
| Msa0101730 | MtrunA17_Chr4g0033961 | 37.500 | 88 | 55 | 0 | 28 | 115 | 9 | 96 | 6.76e-11 | 63.5 |
| Msa0101730 | MtrunA17_Chr4g0067431 | 23.853 | 327 | 203 | 12 | 26 | 347 | 16 | 301 | 7.44e-11 | 62.8 |
| Msa0101730 | MtrunA17_Chr7g0233571 | 31.915 | 94 | 64 | 0 | 26 | 119 | 11 | 104 | 9.03e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0101730 | AT4G33280.1 | 31.124 | 347 | 191 | 7 | 3 | 344 | 2 | 305 | 1.92e-49 | 170 |
| Msa0101730 | AT4G33280.3 | 31.733 | 375 | 213 | 10 | 3 | 344 | 2 | 366 | 5.94e-49 | 170 |
| Msa0101730 | AT4G33280.2 | 51.880 | 133 | 62 | 2 | 3 | 134 | 2 | 133 | 9.92e-42 | 148 |
| Msa0101730 | AT3G18990.2 | 26.648 | 364 | 229 | 10 | 23 | 368 | 5 | 348 | 2.75e-26 | 108 |
| Msa0101730 | AT3G18990.1 | 26.934 | 349 | 217 | 10 | 23 | 353 | 5 | 333 | 4.48e-26 | 107 |
| Msa0101730 | AT4G34400.2 | 38.614 | 101 | 57 | 2 | 26 | 124 | 17 | 114 | 2.10e-18 | 86.7 |
| Msa0101730 | AT4G34400.1 | 38.614 | 101 | 57 | 2 | 26 | 124 | 17 | 114 | 2.10e-18 | 86.7 |
| Msa0101730 | AT3G06220.1 | 28.000 | 125 | 81 | 3 | 26 | 150 | 11 | 126 | 1.34e-15 | 74.7 |
| Msa0101730 | AT3G06160.1 | 32.381 | 105 | 69 | 2 | 26 | 130 | 26 | 128 | 1.90e-13 | 71.2 |
| Msa0101730 | AT3G06160.5 | 32.381 | 105 | 69 | 2 | 26 | 130 | 11 | 113 | 2.38e-13 | 70.9 |
| Msa0101730 | AT3G06160.4 | 32.381 | 105 | 69 | 2 | 26 | 130 | 11 | 113 | 2.38e-13 | 70.9 |
| Msa0101730 | AT3G06160.3 | 32.381 | 105 | 69 | 2 | 26 | 130 | 11 | 113 | 2.38e-13 | 70.9 |
| Msa0101730 | AT3G06160.2 | 32.381 | 105 | 69 | 2 | 26 | 130 | 70 | 172 | 2.52e-13 | 71.2 |
| Msa0101730 | AT4G01580.1 | 38.542 | 96 | 58 | 1 | 26 | 121 | 31 | 125 | 8.47e-13 | 67.0 |
| Msa0101730 | AT3G18960.1 | 30.128 | 156 | 95 | 3 | 26 | 173 | 31 | 180 | 1.15e-12 | 67.0 |
| Msa0101730 | AT3G18960.2 | 30.128 | 156 | 95 | 3 | 26 | 173 | 31 | 180 | 1.17e-12 | 66.6 |
| Msa0101730 | AT5G60130.5 | 38.462 | 91 | 51 | 2 | 37 | 122 | 25 | 115 | 3.34e-12 | 66.2 |
| Msa0101730 | AT5G60130.3 | 39.326 | 89 | 49 | 2 | 39 | 122 | 1 | 89 | 5.70e-12 | 66.2 |
| Msa0101730 | AT5G42700.2 | 29.487 | 156 | 98 | 4 | 205 | 359 | 35 | 179 | 7.63e-12 | 64.3 |
| Msa0101730 | AT5G60130.2 | 38.462 | 91 | 51 | 2 | 37 | 122 | 25 | 115 | 8.10e-12 | 65.9 |
| Msa0101730 | AT5G60130.1 | 38.462 | 91 | 51 | 2 | 37 | 122 | 25 | 115 | 8.46e-12 | 66.2 |
| Msa0101730 | AT5G60130.4 | 38.462 | 91 | 51 | 2 | 37 | 122 | 22 | 112 | 8.61e-12 | 66.2 |
| Msa0101730 | AT5G66980.1 | 25.234 | 321 | 184 | 15 | 37 | 343 | 21 | 299 | 1.58e-11 | 65.5 |
| Msa0101730 | AT5G42700.1 | 29.487 | 156 | 98 | 4 | 205 | 359 | 80 | 224 | 3.05e-11 | 63.2 |
| Msa0101730 | AT3G18960.3 | 39.773 | 88 | 50 | 2 | 34 | 121 | 4 | 88 | 7.12e-11 | 61.2 |
| Msa0101730 | AT1G49475.1 | 36.364 | 88 | 55 | 1 | 28 | 115 | 37 | 123 | 7.77e-11 | 61.2 |
Find 65 sgRNAs with CRISPR-Local
Find 225 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTCCAATCTTAATGTTAT+TGG | 0.151186 | 1_3:+8368553 | None:intergenic |
| CCAGAAAATGTGACACTTAA+AGG | 0.229513 | 1_3:-8370860 | Msa0101730:CDS |
| TCCCAAGAATTAGCTTCTTT+TGG | 0.236174 | 1_3:+8370365 | None:intergenic |
| TGAAATGGATGAACTGAAAA+TGG | 0.269637 | 1_3:+8371739 | None:intergenic |
| AATCGGTGGTGCTCAGAAAA+AGG | 0.289293 | 1_3:+8371715 | None:intergenic |
| AGTGGAGTTGTGTGGAATAT+AGG | 0.300231 | 1_3:-8370833 | Msa0101730:CDS |
| CATGGGAGGAAGAGATTTAT+TGG | 0.314320 | 1_3:-8371764 | Msa0101730:CDS |
| CACCAAAAGAAGCTAATTCT+TGG | 0.330626 | 1_3:-8370367 | Msa0101730:CDS |
| ACTTCTATAACAGGCTTCTC+AGG | 0.332466 | 1_3:+8370422 | None:intergenic |
| GTGCTTCGCCTGAGAAATTT+CGG | 0.346528 | 1_3:-8370532 | Msa0101730:CDS |
| TTCTTGCTCGCTTATTAGTC+TGG | 0.350678 | 1_3:+8370390 | None:intergenic |
| TACAAGTTGTTGTTGAAAAT+CGG | 0.361361 | 1_3:+8371698 | None:intergenic |
| CATGCCAATAACATTAAGAT+TGG | 0.393538 | 1_3:-8368557 | Msa0101730:CDS |
| GTTTCAAAAGTTAGAGCTAA+AGG | 0.409398 | 1_3:+8370488 | None:intergenic |
| TGTCGGTGGTTCATGTGTTA+TGG | 0.418901 | 1_3:-8369366 | Msa0101730:intron |
| GTGGAGTTGTGTGGAATATA+GGG | 0.421556 | 1_3:-8370832 | Msa0101730:CDS |
| GAAGAAGTCAATACTCCTAA+TGG | 0.432859 | 1_3:-8370569 | Msa0101730:CDS |
| CAATGGTGAATCACTCTTTG+AGG | 0.437853 | 1_3:-8370711 | Msa0101730:CDS |
| ACAGGCGTAACTTCTATAAC+AGG | 0.455079 | 1_3:+8370413 | None:intergenic |
| GAACACAAAATAGCAAATCA+TGG | 0.457612 | 1_3:-8371782 | Msa0101730:CDS |
| CATTCAACAACACCACCATT+AGG | 0.459004 | 1_3:+8370554 | None:intergenic |
| GATTATTCTTCATAATATGA+AGG | 0.474432 | 1_3:-8368663 | Msa0101730:CDS |
| ACCAAAAGAAGCTAATTCTT+GGG | 0.475425 | 1_3:-8370366 | Msa0101730:CDS |
| GACTGCCAGGTTGGAAAGGA+AGG | 0.477036 | 1_3:-8368458 | Msa0101730:CDS |
| ATAATATGAAGGGAGAATGT+TGG | 0.478189 | 1_3:-8368652 | Msa0101730:CDS |
| CGTGTTCGCATCACTGAGGT+TGG | 0.480217 | 1_3:-8368494 | Msa0101730:CDS |
| GGCGCTTCCTAAAACATTCT+CGG | 0.481907 | 1_3:-8370903 | Msa0101730:CDS |
| TCAAGACTCCGAAATTTCTC+AGG | 0.493968 | 1_3:+8370524 | None:intergenic |
| TTCCTTGTCTTTAAGTACAA+TGG | 0.496096 | 1_3:-8370728 | Msa0101730:CDS |
| CAAGACCTTCCTTTCCAACC+TGG | 0.506141 | 1_3:+8368453 | None:intergenic |
| GCTCGCTTATTAGTCTGGAC+AGG | 0.522128 | 1_3:+8370395 | None:intergenic |
| ATCAAAACGTTTCATGTCGG+TGG | 0.525440 | 1_3:-8369380 | Msa0101730:CDS |
| ATGTGCCATAGAAAATTGAC+GGG | 0.531620 | 1_3:+8368706 | None:intergenic |
| CTGTTTACTTCGTGGACGGT+TGG | 0.535957 | 1_3:-8370790 | Msa0101730:CDS |
| AAAAGTCACACTCTATGTGC+AGG | 0.543497 | 1_3:-8368596 | Msa0101730:CDS |
| ATTATTCTTCATAATATGAA+GGG | 0.546375 | 1_3:-8368662 | Msa0101730:CDS |
| GACACTGTTTACTTCGTGGA+CGG | 0.546441 | 1_3:-8370794 | Msa0101730:CDS |
| GATGTGCCATAGAAAATTGA+CGG | 0.546685 | 1_3:+8368705 | None:intergenic |
| AGGAGTATTGACTTCTTCAA+CGG | 0.550848 | 1_3:+8370574 | None:intergenic |
| AATATAGGGCTGAATACTAA+AGG | 0.551393 | 1_3:-8370818 | Msa0101730:CDS |
| CACCATTGTACTTAAAGACA+AGG | 0.554483 | 1_3:+8370726 | None:intergenic |
| AACACAAAATAGCAAATCAT+GGG | 0.554639 | 1_3:-8371781 | Msa0101730:CDS |
| CTTCTATAACAGGCTTCTCA+GGG | 0.559699 | 1_3:+8370423 | None:intergenic |
| AGGTGACACTGTTTACTTCG+TGG | 0.562517 | 1_3:-8370798 | Msa0101730:CDS |
| AAAGGGCTAGACTGCCAGGT+TGG | 0.565762 | 1_3:-8368467 | Msa0101730:CDS |
| GAAATGGATGAACTGAAAAT+GGG | 0.566892 | 1_3:+8371740 | None:intergenic |
| GCTAGACTGCCAGGTTGGAA+AGG | 0.567234 | 1_3:-8368462 | Msa0101730:CDS |
| ACTAAACAAGCGGGTAACAA+AGG | 0.576423 | 1_3:-8370614 | Msa0101730:CDS |
| ATATTCCACACAACTCCACT+AGG | 0.578077 | 1_3:+8370836 | None:intergenic |
| AAAGTTATCAAGAAGTGATG+AGG | 0.603703 | 1_3:-8369453 | Msa0101730:CDS |
| GTGACACTTAAAGGTCCTAG+TGG | 0.610309 | 1_3:-8370851 | Msa0101730:CDS |
| TTTAACAAAATATGGAACAG+AGG | 0.614655 | 1_3:+8369406 | None:intergenic |
| GTCACACTCTATGTGCAGGA+TGG | 0.618575 | 1_3:-8368592 | Msa0101730:CDS |
| CAAGCTCATACTAAACAAGC+GGG | 0.619184 | 1_3:-8370623 | Msa0101730:CDS |
| AAGGTCCTAGTGGAGTTGTG+TGG | 0.624686 | 1_3:-8370841 | Msa0101730:CDS |
| ACAAAATAGCAAATCATGGG+AGG | 0.640714 | 1_3:-8371778 | Msa0101730:CDS |
| ATAATCAAAACGTTTCATGT+CGG | 0.645430 | 1_3:-8369383 | Msa0101730:CDS |
| GAAGTCAATACTCCTAATGG+TGG | 0.647991 | 1_3:-8370566 | Msa0101730:CDS |
| ACAAGCTCATACTAAACAAG+CGG | 0.652222 | 1_3:-8370624 | Msa0101730:CDS |
| GCGTATAACAAGGAACACTC+AGG | 0.659512 | 1_3:-8370338 | Msa0101730:intron |
| AAGTTGTTGTTGAAAATCGG+TGG | 0.662291 | 1_3:+8371701 | None:intergenic |
| TTGGGAGAGAGCGTATAACA+AGG | 0.674690 | 1_3:-8370348 | Msa0101730:CDS |
| TTCTATAACAGGCTTCTCAG+GGG | 0.700208 | 1_3:+8370424 | None:intergenic |
| ATTACGTGTTCGCATCACTG+AGG | 0.727229 | 1_3:-8368498 | Msa0101730:CDS |
| TGTGCCATAGAAAATTGACG+GGG | 0.793847 | 1_3:+8368707 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAGAAAAAATTGAAAA+AGG | + | chr1_3:8368579-8368598 | None:intergenic | 10.0% |
| !! | AAAGATAAAAAAATTCAAAA+AGG | + | chr1_3:8368907-8368926 | None:intergenic | 10.0% |
| !!! | TTGATTATTTTAACAAAATA+TGG | + | chr1_3:8370815-8370834 | None:intergenic | 10.0% |
| !!! | ATTATTGGTTATATAGTTTA+GGG | - | chr1_3:8368675-8368694 | Msa0101730:CDS | 15.0% |
| !!! | ATATGCTTGTTTTTAAATAA+TGG | - | chr1_3:8368706-8368725 | Msa0101730:CDS | 15.0% |
| !!! | TTAGTTCATTTTAATAGTTT+AGG | - | chr1_3:8368829-8368848 | Msa0101730:intron | 15.0% |
| !!! | TAGTTCATTTTAATAGTTTA+GGG | - | chr1_3:8368830-8368849 | Msa0101730:intron | 15.0% |
| !! | ATAAAAAAATTCAAAAAGGT+GGG | + | chr1_3:8368903-8368922 | None:intergenic | 15.0% |
| !! | ATAAATTAAGAATCACAAAA+GGG | + | chr1_3:8370879-8370898 | None:intergenic | 15.0% |
| !! | ATTATTCTTCATAATATGAA+GGG | - | chr1_3:8371548-8371567 | Msa0101730:intron | 15.0% |
| !!! | ATTGAAAAAGGTTGAATTTT+TGG | + | chr1_3:8368567-8368586 | None:intergenic | 20.0% |
| !! | AAAAGGATAGAGAATTTAAA+AGG | + | chr1_3:8368614-8368633 | None:intergenic | 20.0% |
| !!! | GATTATTGGTTATATAGTTT+AGG | - | chr1_3:8368674-8368693 | Msa0101730:CDS | 20.0% |
| !! | GATAAAAAAATTCAAAAAGG+TGG | + | chr1_3:8368904-8368923 | None:intergenic | 20.0% |
| !! | AAAATTAGAAACTTCAACAT+GGG | + | chr1_3:8368999-8369018 | None:intergenic | 20.0% |
| !!! | AAGTTTCTAATTTTGCTTTT+GGG | - | chr1_3:8369005-8369024 | Msa0101730:intron | 20.0% |
| !! | GAAAGTTATAAATTTATTGC+AGG | - | chr1_3:8369286-8369305 | Msa0101730:intron | 20.0% |
| !!! | TTTGAGGTTTTAATCTTTAA+TGG | - | chr1_3:8369515-8369534 | Msa0101730:intron | 20.0% |
| !! | TTCATATGGTAAAAGTTAAT+GGG | + | chr1_3:8369917-8369936 | None:intergenic | 20.0% |
| !! | ATTCATATGGTAAAAGTTAA+TGG | + | chr1_3:8369918-8369937 | None:intergenic | 20.0% |
| !!! | GATTTTTGTTTTTACTGATA+GGG | - | chr1_3:8370248-8370267 | Msa0101730:intron | 20.0% |
| !!! | AATCATGAGTTTTAAGAAAA+AGG | + | chr1_3:8370703-8370722 | None:intergenic | 20.0% |
| !! | GATAAATTAAGAATCACAAA+AGG | + | chr1_3:8370880-8370899 | None:intergenic | 20.0% |
| !! | GAGATATAACAACATTATTT+GGG | + | chr1_3:8370905-8370924 | None:intergenic | 20.0% |
| !! | AGAGATATAACAACATTATT+TGG | + | chr1_3:8370906-8370925 | None:intergenic | 20.0% |
| !! | AAATGAAACAAAACACAAAA+GGG | + | chr1_3:8370932-8370951 | None:intergenic | 20.0% |
| !! | ATTAAATTACCAGTAAAAGA+TGG | - | chr1_3:8371062-8371081 | Msa0101730:intron | 20.0% |
| !! | ACTATGATAACAAAAACAAT+CGG | + | chr1_3:8371300-8371319 | None:intergenic | 20.0% |
| !!! | TCATTCAATACAAACTTTTA+AGG | + | chr1_3:8371330-8371349 | None:intergenic | 20.0% |
| !! | ATATGACAAAAACTTCAAAT+GGG | + | chr1_3:8371389-8371408 | None:intergenic | 20.0% |
| !! | AATATGACAAAAACTTCAAA+TGG | + | chr1_3:8371390-8371409 | None:intergenic | 20.0% |
| !! | GATTATTCTTCATAATATGA+AGG | - | chr1_3:8371547-8371566 | Msa0101730:intron | 20.0% |
| ! | AACACAAAATAGCAAATCAT+GGG | - | chr1_3:8368429-8368448 | Msa0101730:CDS | 25.0% |
| !! | TACAAGTTGTTGTTGAAAAT+CGG | + | chr1_3:8368515-8368534 | None:intergenic | 25.0% |
| !!! | AATGTTGAGCTTTTGATTAT+TGG | - | chr1_3:8368660-8368679 | Msa0101730:CDS | 25.0% |
| !!! | CTATCACTTTTTCATCAATT+TGG | + | chr1_3:8368857-8368876 | None:intergenic | 25.0% |
| ! | TGATGAAAAAGTGATAGTAT+AGG | - | chr1_3:8368860-8368879 | Msa0101730:intron | 25.0% |
| !! | TGAAGAAAATTTTGAGCTTT+TGG | - | chr1_3:8368964-8368983 | Msa0101730:intron | 25.0% |
| !!! | AAATTTTGAGCTTTTGGTTA+TGG | - | chr1_3:8368970-8368989 | Msa0101730:intron | 25.0% |
| ! | CAAAATTAGAAACTTCAACA+TGG | + | chr1_3:8369000-8369019 | None:intergenic | 25.0% |
| !! | GAAGTTTCTAATTTTGCTTT+TGG | - | chr1_3:8369004-8369023 | Msa0101730:intron | 25.0% |
| ! | CATGTACTTGAGATTATTAA+TGG | - | chr1_3:8369163-8369182 | Msa0101730:intron | 25.0% |
| !!! | TCTTATTTTGTTCTAGAATG+TGG | - | chr1_3:8369563-8369582 | Msa0101730:intron | 25.0% |
| !!! | CTAACTTTTGAAACTACTAA+TGG | - | chr1_3:8369731-8369750 | Msa0101730:intron | 25.0% |
| !! | AATGGAAATACTTTTAATGC+TGG | - | chr1_3:8369749-8369768 | Msa0101730:intron | 25.0% |
| ! | TAGATGAGTTAGAATTCATA+TGG | + | chr1_3:8369931-8369950 | None:intergenic | 25.0% |
| !! | CATCTAGTAACTATAACTTT+TGG | - | chr1_3:8369945-8369964 | Msa0101730:intron | 25.0% |
| !! | ATCTTGATTTTGTACTAAAC+TGG | - | chr1_3:8370116-8370135 | Msa0101730:intron | 25.0% |
| ! | AAATCTAGTGTGTATCTATA+TGG | - | chr1_3:8370154-8370173 | Msa0101730:intron | 25.0% |
| !! | AAAATTCATGATAGTGAATC+AGG | + | chr1_3:8370200-8370219 | None:intergenic | 25.0% |
| !!! | CGATTTTTGTTTTTACTGAT+AGG | - | chr1_3:8370247-8370266 | Msa0101730:intron | 25.0% |
| ! | AATAAGAAAAGAGAATGATG+AGG | - | chr1_3:8370347-8370366 | Msa0101730:CDS | 25.0% |
| !!! | TGAGTTTTAAGAAAAAGGAT+AGG | + | chr1_3:8370698-8370717 | None:intergenic | 25.0% |
| ! | TTTAACAAAATATGGAACAG+AGG | + | chr1_3:8370807-8370826 | None:intergenic | 25.0% |
| ! | ATAATCAAAACGTTTCATGT+CGG | - | chr1_3:8370827-8370846 | Msa0101730:CDS | 25.0% |
| ! | ATATAACAACATTATTTGGG+AGG | + | chr1_3:8370902-8370921 | None:intergenic | 25.0% |
| ! | CAAATGAAACAAAACACAAA+AGG | + | chr1_3:8370933-8370952 | None:intergenic | 25.0% |
| !! | TGCATTCATCTTTTTATGTA+TGG | - | chr1_3:8370998-8371017 | Msa0101730:intron | 25.0% |
| !! | ATTCATCTTTTTATGTATGG+AGG | - | chr1_3:8371001-8371020 | Msa0101730:intron | 25.0% |
| ! | ATCTCCAATCTTAATGTTAT+TGG | + | chr1_3:8371660-8371679 | None:intergenic | 25.0% |
| GAACACAAAATAGCAAATCA+TGG | - | chr1_3:8368428-8368447 | Msa0101730:CDS | 30.0% | |
| GAAATGGATGAACTGAAAAT+GGG | + | chr1_3:8368473-8368492 | None:intergenic | 30.0% | |
| TGAAATGGATGAACTGAAAA+TGG | + | chr1_3:8368474-8368493 | None:intergenic | 30.0% | |
| GGATAGAGAATTTAAAAGGT+GGG | + | chr1_3:8368610-8368629 | None:intergenic | 30.0% | |
| AGGATAGAGAATTTAAAAGG+TGG | + | chr1_3:8368611-8368630 | None:intergenic | 30.0% | |
| GCAGTTAAAGGAAATGTAAA+AGG | + | chr1_3:8368631-8368650 | None:intergenic | 30.0% | |
| ! | ATTTTCTTCAGTGCAGTTAA+AGG | + | chr1_3:8368643-8368662 | None:intergenic | 30.0% |
| TTGGATAGGAGAATAGTTTA+GGG | - | chr1_3:8368801-8368820 | Msa0101730:intron | 30.0% | |
| CAATGTTTCTTACTCTTAAC+TGG | - | chr1_3:8369264-8369283 | Msa0101730:intron | 30.0% | |
| ! | ATATTGTCCGAGAATGTTTT+AGG | + | chr1_3:8369317-8369336 | None:intergenic | 30.0% |
| AATATAGGGCTGAATACTAA+AGG | - | chr1_3:8369392-8369411 | Msa0101730:CDS | 30.0% | |
| TTCCTTGTCTTTAAGTACAA+TGG | - | chr1_3:8369482-8369501 | Msa0101730:intron | 30.0% | |
| GTTTCAAAAGTTAGAGCTAA+AGG | + | chr1_3:8369725-8369744 | None:intergenic | 30.0% | |
| ACCAAAAGAAGCTAATTCTT+GGG | - | chr1_3:8369844-8369863 | Msa0101730:intron | 30.0% | |
| ! | ACTATAACTTTTGGATGTCA+TGG | - | chr1_3:8369954-8369973 | Msa0101730:intron | 30.0% |
| GATAATCATAAACCATGCTT+AGG | + | chr1_3:8370070-8370089 | None:intergenic | 30.0% | |
| !!! | ACTAGATTTTCGTATCGATT+GGG | + | chr1_3:8370143-8370162 | None:intergenic | 30.0% |
| GTTAGAATTAGTTGGTTAGT+TGG | - | chr1_3:8370385-8370404 | Msa0101730:CDS | 30.0% | |
| !! | GGATGAATCATTGTTTTGTT+TGG | - | chr1_3:8370464-8370483 | Msa0101730:CDS | 30.0% |
| ! | ATTGTTTGATTTCTGTGTAG+AGG | - | chr1_3:8370494-8370513 | Msa0101730:CDS | 30.0% |
| CCAGAAGTAAGAAATTAAAG+AGG | + | chr1_3:8370587-8370606 | None:intergenic | 30.0% | |
| ! | CCTCTTTAATTTCTTACTTC+TGG | - | chr1_3:8370584-8370603 | Msa0101730:CDS | 30.0% |
| AAAGTTATCAAGAAGTGATG+AGG | - | chr1_3:8370757-8370776 | Msa0101730:CDS | 30.0% | |
| ! | ATCTTTTTATGTATGGAGGA+TGG | - | chr1_3:8371005-8371024 | Msa0101730:intron | 30.0% |
| AGAATAGTTCAAATCTACCA+AGG | + | chr1_3:8371146-8371165 | None:intergenic | 30.0% | |
| CTTCAAATGGGAAATATTTG+AGG | + | chr1_3:8371377-8371396 | None:intergenic | 30.0% | |
| TCTATGGCACATCTTAAAAA+AGG | - | chr1_3:8371515-8371534 | Msa0101730:intron | 30.0% | |
| ATAATATGAAGGGAGAATGT+TGG | - | chr1_3:8371558-8371577 | Msa0101730:intron | 30.0% | |
| CATGCCAATAACATTAAGAT+TGG | - | chr1_3:8371653-8371672 | Msa0101730:intron | 30.0% | |
| ! | GTTTCATATGCTCATTTTGA+TGG | + | chr1_3:8371784-8371803 | None:intergenic | 30.0% |
| ACAAAATAGCAAATCATGGG+AGG | - | chr1_3:8368432-8368451 | Msa0101730:CDS | 35.0% | |
| ! | AAGTTGTTGTTGAAAATCGG+TGG | + | chr1_3:8368512-8368531 | None:intergenic | 35.0% |
| ! | CACTCAATTTTGTTAACCGA+GGG | - | chr1_3:8368769-8368788 | Msa0101730:intron | 35.0% |
| TATCCAACTATATAGTCCCT+CGG | + | chr1_3:8368788-8368807 | None:intergenic | 35.0% | |
| GTTGGATAGGAGAATAGTTT+AGG | - | chr1_3:8368800-8368819 | Msa0101730:intron | 35.0% | |
| AAAAGAACAAGCTGCAGTTA+AGG | + | chr1_3:8368945-8368964 | None:intergenic | 35.0% | |
| ! | GCTATAGAATCACACTTTTG+TGG | - | chr1_3:8369051-8369070 | Msa0101730:intron | 35.0% |
| GGCTGAAAAGAAAGTGAAAA+AGG | - | chr1_3:8369072-8369091 | Msa0101730:intron | 35.0% | |
| CTGAAGAATCTAAGAGATGA+TGG | + | chr1_3:8369242-8369261 | None:intergenic | 35.0% | |
| ! | CCTTTAAGTGTCACATTTTC+TGG | + | chr1_3:8369353-8369372 | None:intergenic | 35.0% |
| CCAGAAAATGTGACACTTAA+AGG | - | chr1_3:8369350-8369369 | Msa0101730:intron | 35.0% | |
| CACCATTGTACTTAAAGACA+AGG | + | chr1_3:8369487-8369506 | None:intergenic | 35.0% | |
| ACAAGCTCATACTAAACAAG+CGG | - | chr1_3:8369586-8369605 | Msa0101730:intron | 35.0% | |
| !! | AGGAGTATTGACTTCTTCAA+CGG | + | chr1_3:8369639-8369658 | None:intergenic | 35.0% |
| GAAGAAGTCAATACTCCTAA+TGG | - | chr1_3:8369641-8369660 | Msa0101730:intron | 35.0% | |
| CACCAAAAGAAGCTAATTCT+TGG | - | chr1_3:8369843-8369862 | Msa0101730:intron | 35.0% | |
| !! | TCCCAAGAATTAGCTTCTTT+TGG | + | chr1_3:8369848-8369867 | None:intergenic | 35.0% |
| ! | ACTAGTTTGCACAATGAACA+TGG | + | chr1_3:8370027-8370046 | None:intergenic | 35.0% |
| ! | TAGTTTTTCCCCCTCTTTAA+TGG | - | chr1_3:8370043-8370062 | Msa0101730:intron | 35.0% |
| ATGCTTAGGACCATTAAAGA+GGG | + | chr1_3:8370056-8370075 | None:intergenic | 35.0% | |
| TTATCAGTATCTAGCGATAC+AGG | - | chr1_3:8370085-8370104 | Msa0101730:intron | 35.0% | |
| !! | CACTAGATTTTCGTATCGAT+TGG | + | chr1_3:8370144-8370163 | None:intergenic | 35.0% |
| AAGGTAATAAGCCCAAAGTA+TGG | - | chr1_3:8370306-8370325 | Msa0101730:intron | 35.0% | |
| GCATAAACTCTCCATACTTT+GGG | + | chr1_3:8370320-8370339 | None:intergenic | 35.0% | |
| AAGAAAAGAGAATGATGAGG+TGG | - | chr1_3:8370350-8370369 | Msa0101730:CDS | 35.0% | |
| GAGGGAAAGTTAGAATTAGT+TGG | - | chr1_3:8370377-8370396 | Msa0101730:CDS | 35.0% | |
| ! | TAGTTGGTTAGTTGGTTAGT+TGG | - | chr1_3:8370393-8370412 | Msa0101730:CDS | 35.0% |
| !! | TAGTTGGTTAGTTGGTGATT+CGG | - | chr1_3:8370401-8370420 | Msa0101730:CDS | 35.0% |
| CACATTTCATTTGCGATTCT+CGG | - | chr1_3:8370558-8370577 | Msa0101730:CDS | 35.0% | |
| !! | TGACAAGTATCAGTTTGCTA+GGG | + | chr1_3:8370631-8370650 | None:intergenic | 35.0% |
| ! | ATGACAAGTATCAGTTTGCT+AGG | + | chr1_3:8370632-8370651 | None:intergenic | 35.0% |
| TAGCAAACTGATACTTGTCA+TGG | - | chr1_3:8370631-8370650 | Msa0101730:CDS | 35.0% | |
| TTAAGAAAAAGGATAGGCTC+TGG | + | chr1_3:8370692-8370711 | None:intergenic | 35.0% | |
| AATTGTTCAATTCCACACAG+AGG | - | chr1_3:8370724-8370743 | Msa0101730:CDS | 35.0% | |
| !!! | TCTTTGAGACCATCTTTTAC+TGG | + | chr1_3:8371074-8371093 | None:intergenic | 35.0% |
| GCATCATACGAAATTATGGA+TGG | + | chr1_3:8371102-8371121 | None:intergenic | 35.0% | |
| ACAGGCATCATACGAAATTA+TGG | + | chr1_3:8371106-8371125 | None:intergenic | 35.0% | |
| TTGACAAACTTCTCAACTAC+TGG | - | chr1_3:8371231-8371250 | Msa0101730:intron | 35.0% | |
| ATCGGTACTTCTTGAAGAAA+TGG | + | chr1_3:8371282-8371301 | None:intergenic | 35.0% | |
| ! | TATACCCCGTCAATTTTCTA+TGG | - | chr1_3:8371499-8371518 | Msa0101730:intron | 35.0% |
| ATGTGCCATAGAAAATTGAC+GGG | + | chr1_3:8371507-8371526 | None:intergenic | 35.0% | |
| GATGTGCCATAGAAAATTGA+CGG | + | chr1_3:8371508-8371527 | None:intergenic | 35.0% | |
| ATCACTGAGGTTGGAAAAAA+AGG | - | chr1_3:8371725-8371744 | Msa0101730:CDS | 35.0% | |
| TCACTGAGGTTGGAAAAAAA+GGG | - | chr1_3:8371726-8371745 | Msa0101730:CDS | 35.0% | |
| CATGGGAGGAAGAGATTTAT+TGG | - | chr1_3:8368446-8368465 | Msa0101730:CDS | 40.0% | |
| TGCTCAGAAAAAGGGTGAAA+TGG | + | chr1_3:8368489-8368508 | None:intergenic | 40.0% | |
| CCTCGGTTAACAAAATTGAG+TGG | + | chr1_3:8368771-8368790 | None:intergenic | 40.0% | |
| ! | CCACTCAATTTTGTTAACCG+AGG | - | chr1_3:8368768-8368787 | Msa0101730:intron | 40.0% |
| TAACCGAGGGACTATATAGT+TGG | - | chr1_3:8368782-8368801 | Msa0101730:intron | 40.0% | |
| GAGGGACTATATAGTTGGAT+AGG | - | chr1_3:8368787-8368806 | Msa0101730:intron | 40.0% | |
| AAAAGGTGGGCAATTTAGTC+CGG | + | chr1_3:8368890-8368909 | None:intergenic | 40.0% | |
| GAAAAAGGAGATTGTAGCGT+AGG | - | chr1_3:8369087-8369106 | Msa0101730:intron | 40.0% | |
| ! | GATTGTAGCGTAGGTTTTCA+TGG | - | chr1_3:8369096-8369115 | Msa0101730:intron | 40.0% |
| ATATTCCACACAACTCCACT+AGG | + | chr1_3:8369377-8369396 | None:intergenic | 40.0% | |
| AGTGGAGTTGTGTGGAATAT+AGG | - | chr1_3:8369377-8369396 | Msa0101730:CDS | 40.0% | |
| GTGGAGTTGTGTGGAATATA+GGG | - | chr1_3:8369378-8369397 | Msa0101730:CDS | 40.0% | |
| CAATGGTGAATCACTCTTTG+AGG | - | chr1_3:8369499-8369518 | Msa0101730:intron | 40.0% | |
| CAAGCTCATACTAAACAAGC+GGG | - | chr1_3:8369587-8369606 | Msa0101730:intron | 40.0% | |
| ACTAAACAAGCGGGTAACAA+AGG | - | chr1_3:8369596-8369615 | Msa0101730:intron | 40.0% | |
| GAAGTCAATACTCCTAATGG+TGG | - | chr1_3:8369644-8369663 | Msa0101730:intron | 40.0% | |
| CATTCAACAACACCACCATT+AGG | + | chr1_3:8369659-8369678 | None:intergenic | 40.0% | |
| TCAAGACTCCGAAATTTCTC+AGG | + | chr1_3:8369689-8369708 | None:intergenic | 40.0% | |
| TTCTATAACAGGCTTCTCAG+GGG | + | chr1_3:8369789-8369808 | None:intergenic | 40.0% | |
| CTTCTATAACAGGCTTCTCA+GGG | + | chr1_3:8369790-8369809 | None:intergenic | 40.0% | |
| ACTTCTATAACAGGCTTCTC+AGG | + | chr1_3:8369791-8369810 | None:intergenic | 40.0% | |
| ACAGGCGTAACTTCTATAAC+AGG | + | chr1_3:8369800-8369819 | None:intergenic | 40.0% | |
| TTCTTGCTCGCTTATTAGTC+TGG | + | chr1_3:8369823-8369842 | None:intergenic | 40.0% | |
| TGCTTAGGACCATTAAAGAG+GGG | + | chr1_3:8370055-8370074 | None:intergenic | 40.0% | |
| CATGCTTAGGACCATTAAAG+AGG | + | chr1_3:8370057-8370076 | None:intergenic | 40.0% | |
| CTCTTTAATGGTCCTAAGCA+TGG | - | chr1_3:8370055-8370074 | Msa0101730:intron | 40.0% | |
| CTTAACCTTAGCAGATGACA+TGG | - | chr1_3:8370272-8370291 | Msa0101730:intron | 40.0% | |
| GCTTATTACCTTTGTCACTG+AGG | + | chr1_3:8370298-8370317 | None:intergenic | 40.0% | |
| CGCATAAACTCTCCATACTT+TGG | + | chr1_3:8370321-8370340 | None:intergenic | 40.0% | |
| AAGTATGGAGAGTTTATGCG+AGG | - | chr1_3:8370321-8370340 | Msa0101730:intron | 40.0% | |
| !! | GTTGGTGATTCGGTTATATG+AGG | - | chr1_3:8370411-8370430 | Msa0101730:CDS | 40.0% |
| !! | GTGATTCGGTTATATGAGGT+GGG | - | chr1_3:8370415-8370434 | Msa0101730:CDS | 40.0% |
| TGTGTAGAGGATTGCTCTTT+GGG | - | chr1_3:8370507-8370526 | Msa0101730:CDS | 40.0% | |
| !! | GACAAGTATCAGTTTGCTAG+GGG | + | chr1_3:8370630-8370649 | None:intergenic | 40.0% |
| ATCAAAACGTTTCATGTCGG+TGG | - | chr1_3:8370830-8370849 | Msa0101730:CDS | 40.0% | |
| ATTTGCTTGAGCAACTGATC+TGG | - | chr1_3:8370948-8370967 | Msa0101730:intron | 40.0% | |
| ! | TGCTTTATTCCATGCTTACC+AGG | + | chr1_3:8371033-8371052 | None:intergenic | 40.0% |
| !! | GTTGACTCGTTAATTAGGAC+AGG | + | chr1_3:8371124-8371143 | None:intergenic | 40.0% |
| !! | CCAAGGTTGACTCGTTAATT+AGG | + | chr1_3:8371129-8371148 | None:intergenic | 40.0% |
| CCTAATTAACGAGTCAACCT+TGG | - | chr1_3:8371126-8371145 | Msa0101730:intron | 40.0% | |
| TCTTGCACTTCAATGCATGT+TGG | - | chr1_3:8371169-8371188 | Msa0101730:intron | 40.0% | |
| ACTTTCCTATTCACTGTGCT+TGG | - | chr1_3:8371423-8371442 | Msa0101730:intron | 40.0% | |
| TAATGCCAAGCACAGTGAAT+AGG | + | chr1_3:8371431-8371450 | None:intergenic | 40.0% | |
| TGTGCCATAGAAAATTGACG+GGG | + | chr1_3:8371506-8371525 | None:intergenic | 40.0% | |
| !! | CTTTTTGGCACTTTAGCTGT+GGG | + | chr1_3:8371599-8371618 | None:intergenic | 40.0% |
| !! | ACTTTTTGGCACTTTAGCTG+TGG | + | chr1_3:8371600-8371619 | None:intergenic | 40.0% |
| ! | GCACATAGAGTGTGACTTTT+TGG | + | chr1_3:8371614-8371633 | None:intergenic | 40.0% |
| AAAAGTCACACTCTATGTGC+AGG | - | chr1_3:8371614-8371633 | Msa0101730:intron | 40.0% | |
| ATCGGTGGTGCTCAGAAAAA+GGG | + | chr1_3:8368497-8368516 | None:intergenic | 45.0% | |
| AATCGGTGGTGCTCAGAAAA+AGG | + | chr1_3:8368498-8368517 | None:intergenic | 45.0% | |
| AAGTGATAGTATAGGCCCTC+CGG | - | chr1_3:8368868-8368887 | Msa0101730:intron | 45.0% | |
| GGCGCTTCCTAAAACATTCT+CGG | - | chr1_3:8369307-8369326 | Msa0101730:intron | 45.0% | |
| GTGACACTTAAAGGTCCTAG+TGG | - | chr1_3:8369359-8369378 | Msa0101730:intron | 45.0% | |
| AGGTGACACTGTTTACTTCG+TGG | - | chr1_3:8369412-8369431 | Msa0101730:CDS | 45.0% | |
| GACACTGTTTACTTCGTGGA+CGG | - | chr1_3:8369416-8369435 | Msa0101730:CDS | 45.0% | |
| GTGCTTCGCCTGAGAAATTT+CGG | - | chr1_3:8369678-8369697 | Msa0101730:intron | 45.0% | |
| ! | TTGGGAGAGAGCGTATAACA+AGG | - | chr1_3:8369862-8369881 | Msa0101730:intron | 45.0% |
| GCGTATAACAAGGAACACTC+AGG | - | chr1_3:8369872-8369891 | Msa0101730:intron | 45.0% | |
| GCTTAGGACCATTAAAGAGG+GGG | + | chr1_3:8370054-8370073 | None:intergenic | 45.0% | |
| AAGAGAATGATGAGGTGGCA+AGG | - | chr1_3:8370355-8370374 | Msa0101730:CDS | 45.0% | |
| !! | GGTGATTCGGTTATATGAGG+TGG | - | chr1_3:8370414-8370433 | Msa0101730:CDS | 45.0% |
| GTTATATGAGGTGGGAGTTG+TGG | - | chr1_3:8370423-8370442 | Msa0101730:CDS | 45.0% | |
| CTGTGTAGAGGATTGCTCTT+TGG | - | chr1_3:8370506-8370525 | Msa0101730:CDS | 45.0% | |
| AGGATTGCTCTTTGGGTAGT+AGG | - | chr1_3:8370514-8370533 | Msa0101730:CDS | 45.0% | |
| GGATTGCTCTTTGGGTAGTA+GGG | - | chr1_3:8370515-8370534 | Msa0101730:CDS | 45.0% | |
| TGTCGGTGGTTCATGTGTTA+TGG | - | chr1_3:8370844-8370863 | Msa0101730:CDS | 45.0% | |
| TATGTATGGAGGATGGAACC+TGG | - | chr1_3:8371012-8371031 | Msa0101730:intron | 45.0% | |
| ATTACGTGTTCGCATCACTG+AGG | - | chr1_3:8371712-8371731 | Msa0101730:CDS | 45.0% | |
| AAAAAAAGGGCTAGACTGCC+AGG | - | chr1_3:8371739-8371758 | Msa0101730:CDS | 45.0% | |
| AAGGTCCTAGTGGAGTTGTG+TGG | - | chr1_3:8369369-8369388 | Msa0101730:CDS | 50.0% | |
| CTGTTTACTTCGTGGACGGT+TGG | - | chr1_3:8369420-8369439 | Msa0101730:CDS | 50.0% | |
| ! | GCTCGCTTATTAGTCTGGAC+AGG | + | chr1_3:8369818-8369837 | None:intergenic | 50.0% |
| TGAGGCCATGTCATCTGCTA+AGG | + | chr1_3:8370280-8370299 | None:intergenic | 50.0% | |
| TGACATGGCCTCAGTGACAA+AGG | - | chr1_3:8370287-8370306 | Msa0101730:intron | 50.0% | |
| AGAATGATGAGGTGGCAAGG+AGG | - | chr1_3:8370358-8370377 | Msa0101730:CDS | 50.0% | |
| GAATGATGAGGTGGCAAGGA+GGG | - | chr1_3:8370359-8370378 | Msa0101730:CDS | 50.0% | |
| !! | TGGAGAGATGGAGGGTATCA+TGG | - | chr1_3:8370443-8370462 | Msa0101730:CDS | 50.0% |
| GCTTGAGCAACTGATCTGGT+TGG | - | chr1_3:8370952-8370971 | Msa0101730:intron | 50.0% | |
| AGGATGGAACCTGGTAAGCA+TGG | - | chr1_3:8371021-8371040 | Msa0101730:intron | 50.0% | |
| GTCACACTCTATGTGCAGGA+TGG | - | chr1_3:8371618-8371637 | Msa0101730:intron | 50.0% | |
| CAAGACCTTCCTTTCCAACC+TGG | + | chr1_3:8371760-8371779 | None:intergenic | 50.0% | |
| GGTGGGCAATTTAGTCCGGA+GGG | + | chr1_3:8368886-8368905 | None:intergenic | 55.0% | |
| AGGTGGGCAATTTAGTCCGG+AGG | + | chr1_3:8368887-8368906 | None:intergenic | 55.0% | |
| AGGTGGGAGTTGTGGAGAGA+TGG | - | chr1_3:8370431-8370450 | Msa0101730:CDS | 55.0% | |
| TGGGAGTTGTGGAGAGATGG+AGG | - | chr1_3:8370434-8370453 | Msa0101730:CDS | 55.0% | |
| GGGAGTTGTGGAGAGATGGA+GGG | - | chr1_3:8370435-8370454 | Msa0101730:CDS | 55.0% | |
| TTGACAGTGCTGCCTCTGTG+TGG | + | chr1_3:8370739-8370758 | None:intergenic | 55.0% | |
| CGTGTTCGCATCACTGAGGT+TGG | - | chr1_3:8371716-8371735 | Msa0101730:CDS | 55.0% | |
| AAAGGGCTAGACTGCCAGGT+TGG | - | chr1_3:8371743-8371762 | Msa0101730:CDS | 55.0% | |
| ! | GCTAGACTGCCAGGTTGGAA+AGG | - | chr1_3:8371748-8371767 | Msa0101730:CDS | 55.0% |
| ! | GACTGCCAGGTTGGAAAGGA+AGG | - | chr1_3:8371752-8371771 | Msa0101730:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 8368415 | 8371817 | 8368415 | ID=Msa0101730;Name=Msa0101730 |
| chr1_3 | mRNA | 8368415 | 8371817 | 8368415 | ID=Msa0101730-mRNA-1;Parent=Msa0101730;Name=Msa0101730-mRNA-1;_AED=0.44;_eAED=0.44;_QI=0|0|0|1|1|1|4|0|381 |
| chr1_3 | exon | 8371701 | 8371817 | 8371701 | ID=Msa0101730-mRNA-1:exon:3371;Parent=Msa0101730-mRNA-1 |
| chr1_3 | exon | 8370339 | 8370924 | 8370339 | ID=Msa0101730-mRNA-1:exon:3370;Parent=Msa0101730-mRNA-1 |
| chr1_3 | exon | 8369367 | 8369488 | 8369367 | ID=Msa0101730-mRNA-1:exon:3369;Parent=Msa0101730-mRNA-1 |
| chr1_3 | exon | 8368415 | 8368735 | 8368415 | ID=Msa0101730-mRNA-1:exon:3368;Parent=Msa0101730-mRNA-1 |
| chr1_3 | CDS | 8371701 | 8371817 | 8371701 | ID=Msa0101730-mRNA-1:cds;Parent=Msa0101730-mRNA-1 |
| chr1_3 | CDS | 8370339 | 8370924 | 8370339 | ID=Msa0101730-mRNA-1:cds;Parent=Msa0101730-mRNA-1 |
| chr1_3 | CDS | 8369367 | 8369488 | 8369367 | ID=Msa0101730-mRNA-1:cds;Parent=Msa0101730-mRNA-1 |
| chr1_3 | CDS | 8368415 | 8368735 | 8368415 | ID=Msa0101730-mRNA-1:cds;Parent=Msa0101730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
