Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0102060 | sp|Q8RYD1|REM16_ARATH | 24.759 | 311 | 184 | 8 | 2 | 285 | 39 | 326 | 8.84e-14 | 73.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0102060 | A0A396JU70 | 86.913 | 298 | 27 | 1 | 1 | 298 | 26 | 311 | 3.41e-174 | 495 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0102060 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0102060 | MtrunA17_Chr1g0163221 | 86.913 | 298 | 27 | 1 | 1 | 298 | 26 | 311 | 6.57e-178 | 495 |
| Msa0102060 | MtrunA17_Chr4g0067431 | 65.772 | 298 | 89 | 6 | 2 | 290 | 31 | 324 | 1.75e-131 | 376 |
| Msa0102060 | MtrunA17_Chr6g0467351 | 64.851 | 202 | 62 | 2 | 2 | 200 | 31 | 226 | 3.31e-88 | 263 |
| Msa0102060 | MtrunA17_Chr1g0163061 | 52.766 | 235 | 62 | 3 | 2 | 187 | 31 | 265 | 5.40e-58 | 187 |
| Msa0102060 | MtrunA17_Chr1g0163071 | 29.642 | 307 | 189 | 8 | 2 | 290 | 2 | 299 | 9.54e-33 | 122 |
| Msa0102060 | MtrunA17_Chr1g0208771 | 27.586 | 290 | 193 | 8 | 2 | 282 | 13 | 294 | 2.64e-31 | 121 |
| Msa0102060 | MtrunA17_Chr6g0467361 | 66.292 | 89 | 26 | 3 | 200 | 285 | 7 | 94 | 2.49e-29 | 107 |
| Msa0102060 | MtrunA17_Chr1g0163131 | 30.769 | 286 | 162 | 12 | 2 | 270 | 34 | 300 | 3.60e-26 | 105 |
| Msa0102060 | MtrunA17_Chr1g0163201 | 29.167 | 288 | 172 | 8 | 2 | 271 | 19 | 292 | 1.28e-25 | 105 |
| Msa0102060 | MtrunA17_Chr1g0163181 | 28.125 | 288 | 177 | 10 | 2 | 276 | 21 | 291 | 1.52e-25 | 105 |
| Msa0102060 | MtrunA17_Chr1g0163251 | 28.431 | 306 | 193 | 10 | 2 | 302 | 21 | 305 | 3.32e-25 | 103 |
| Msa0102060 | MtrunA17_Chr7g0233561 | 29.123 | 285 | 159 | 10 | 2 | 263 | 34 | 298 | 1.14e-24 | 101 |
| Msa0102060 | MtrunA17_Chr8g0390841 | 26.962 | 293 | 198 | 9 | 2 | 286 | 55 | 339 | 1.54e-24 | 103 |
| Msa0102060 | MtrunA17_Chr3g0131891 | 28.873 | 284 | 178 | 9 | 2 | 277 | 35 | 302 | 3.35e-24 | 100 |
| Msa0102060 | MtrunA17_Chr1g0163261 | 28.114 | 281 | 172 | 9 | 2 | 276 | 25 | 281 | 7.31e-24 | 99.0 |
| Msa0102060 | MtrunA17_Chr7g0233541 | 28.826 | 281 | 165 | 9 | 2 | 263 | 2 | 266 | 3.36e-23 | 97.1 |
| Msa0102060 | MtrunA17_Chr7g0233521 | 27.985 | 268 | 167 | 7 | 2 | 263 | 2 | 249 | 6.78e-23 | 95.9 |
| Msa0102060 | MtrunA17_Chr3g0103181 | 26.923 | 286 | 167 | 10 | 2 | 277 | 26 | 279 | 8.76e-22 | 92.8 |
| Msa0102060 | MtrunA17_Chr3g0103171 | 28.070 | 285 | 171 | 9 | 2 | 277 | 6 | 265 | 1.37e-21 | 91.7 |
| Msa0102060 | MtrunA17_Chr1g0163231 | 27.737 | 274 | 157 | 8 | 2 | 265 | 25 | 267 | 1.69e-20 | 89.4 |
| Msa0102060 | MtrunA17_Chr7g0233531 | 28.253 | 269 | 165 | 7 | 2 | 263 | 2 | 249 | 1.97e-20 | 89.0 |
| Msa0102060 | MtrunA17_Chr1g0171611 | 28.148 | 270 | 149 | 8 | 2 | 265 | 25 | 255 | 4.98e-19 | 85.1 |
| Msa0102060 | MtrunA17_Chr3g0103191 | 26.582 | 237 | 142 | 7 | 2 | 232 | 26 | 236 | 1.18e-18 | 83.6 |
| Msa0102060 | MtrunA17_Chr5g0419201 | 34.839 | 155 | 87 | 4 | 2 | 145 | 32 | 183 | 3.23e-17 | 78.2 |
| Msa0102060 | MtrunA17_Chr6g0476181 | 40.171 | 117 | 62 | 5 | 2 | 115 | 2 | 113 | 1.08e-16 | 75.9 |
| Msa0102060 | MtrunA17_Chr1g0162161 | 32.727 | 165 | 83 | 7 | 2 | 151 | 4 | 155 | 1.15e-16 | 75.9 |
| Msa0102060 | MtrunA17_Chr1g0163121 | 35.714 | 126 | 67 | 4 | 2 | 117 | 11 | 132 | 1.79e-16 | 75.1 |
| Msa0102060 | MtrunA17_Chr1g0163081 | 40.625 | 96 | 53 | 3 | 2 | 97 | 6 | 97 | 7.49e-16 | 73.2 |
| Msa0102060 | MtrunA17_Chr1g0163241 | 32.031 | 128 | 83 | 3 | 2 | 129 | 23 | 146 | 1.16e-14 | 70.5 |
| Msa0102060 | MtrunA17_Chr1g0163101 | 32.886 | 149 | 76 | 6 | 2 | 138 | 33 | 169 | 1.44e-14 | 70.9 |
| Msa0102060 | MtrunA17_Chr3g0077451 | 26.241 | 282 | 142 | 10 | 2 | 277 | 12 | 233 | 2.00e-14 | 71.6 |
| Msa0102060 | MtrunA17_Chr7g0233571 | 38.144 | 97 | 59 | 1 | 2 | 98 | 26 | 121 | 2.38e-14 | 70.9 |
| Msa0102060 | MtrunA17_Chr3g0103151 | 34.848 | 132 | 76 | 6 | 2 | 124 | 26 | 156 | 2.96e-14 | 69.3 |
| Msa0102060 | MtrunA17_Chr3g0103201 | 26.639 | 244 | 141 | 8 | 45 | 277 | 4 | 220 | 4.97e-14 | 70.1 |
| Msa0102060 | MtrunA17_Chr1g0154151 | 26.962 | 293 | 174 | 11 | 1 | 263 | 19 | 301 | 1.29e-13 | 70.5 |
| Msa0102060 | MtrunA17_Chr1g0163191 | 38.462 | 104 | 54 | 3 | 2 | 98 | 21 | 121 | 3.31e-13 | 66.2 |
| Msa0102060 | MtrunA17_Chr1g0154131 | 26.552 | 290 | 156 | 12 | 1 | 263 | 197 | 456 | 3.06e-12 | 66.6 |
| Msa0102060 | MtrunA17_Chr3g0077461 | 24.545 | 330 | 202 | 13 | 2 | 291 | 23 | 345 | 1.17e-11 | 65.1 |
| Msa0102060 | MtrunA17_Chr3g0077411 | 25.660 | 265 | 155 | 9 | 2 | 263 | 278 | 503 | 1.58e-11 | 64.7 |
| Msa0102060 | MtrunA17_Chr3g0077431 | 26.939 | 245 | 114 | 9 | 39 | 277 | 9 | 194 | 4.46e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0102060 | AT4G33280.1 | 24.759 | 311 | 184 | 8 | 2 | 285 | 39 | 326 | 8.99e-15 | 73.9 |
Find 32 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTATCTTTGTCAACAAAA+AGG | 0.196489 | 1_3:-8769176 | None:intergenic |
| GAAGAGAATAATTTGAAATT+TGG | 0.198679 | 1_3:+8769261 | Msa0102060:CDS |
| TTTGGAAACCTTAGAGTAAC+TGG | 0.248158 | 1_3:-8768031 | None:intergenic |
| TATAATTTACCTTCAAAATA+AGG | 0.255936 | 1_3:-8769372 | None:intergenic |
| CTTCATCATCACGCGGTAAA+AGG | 0.264439 | 1_3:+8768302 | Msa0102060:CDS |
| CTCTTTAATGTGATTGTATT+CGG | 0.267780 | 1_3:+8768190 | Msa0102060:CDS |
| TACTCTAAGGTTTCCAAACT+TGG | 0.337891 | 1_3:+8768036 | Msa0102060:CDS |
| AAGTAGCTGTAATGATATTA+AGG | 0.342032 | 1_3:+8768562 | Msa0102060:CDS |
| TAACAAACCCAGTTACTCTA+AGG | 0.363012 | 1_3:+8768023 | Msa0102060:CDS |
| ATTTCAAATTATTCTCTTCA+CGG | 0.368199 | 1_3:-8769257 | None:intergenic |
| ATCAACTCGAATGAACAAAA+AGG | 0.376629 | 1_3:+8768370 | Msa0102060:CDS |
| GAGAAAATAACAACTTGAAA+TGG | 0.395512 | 1_3:-8769327 | None:intergenic |
| TGTTTCTTGACAAATTCATT+TGG | 0.414955 | 1_3:-8769120 | None:intergenic |
| TCTTCACTAGTTTCTCTTGA+AGG | 0.416839 | 1_3:-8768238 | None:intergenic |
| TGAATTTGTCAAGAAACATA+TGG | 0.468376 | 1_3:+8769125 | Msa0102060:CDS |
| ATACATTGATAGAGATCTCT+TGG | 0.475972 | 1_3:+8768667 | Msa0102060:CDS |
| TCTAAGGTTTCCAAACTTGG+TGG | 0.476134 | 1_3:+8768039 | Msa0102060:CDS |
| CACACTTTCATAGACGGTGC+TGG | 0.484435 | 1_3:-8768334 | None:intergenic |
| CTTCACTAGTTTCTCTTGAA+GGG | 0.485568 | 1_3:-8768237 | None:intergenic |
| TTAGCATCATACATGCAAAA+AGG | 0.493064 | 1_3:-8768640 | None:intergenic |
| CAAGAAACATATGGACATGA+TGG | 0.508763 | 1_3:+8769134 | Msa0102060:CDS |
| TATATTTGATTAGTGTCCAT+CGG | 0.520813 | 1_3:+8769391 | Msa0102060:CDS |
| TTCTTACACACTTTCATAGA+CGG | 0.530584 | 1_3:-8768340 | None:intergenic |
| TATATTAAATGAATTTCCGA+TGG | 0.539775 | 1_3:-8769407 | None:intergenic |
| TTTGTGAAAAGGTATTGGAA+AGG | 0.553882 | 1_3:+8767998 | Msa0102060:CDS |
| AATCTGCACTAACTTGTGGT+TGG | 0.573287 | 1_3:+8769226 | Msa0102060:CDS |
| AAACAATCTGCACTAACTTG+TGG | 0.589005 | 1_3:+8769222 | Msa0102060:CDS |
| TTGGAAACCTTAGAGTAACT+GGG | 0.594864 | 1_3:-8768030 | None:intergenic |
| AAACATATGGACATGATGGA+AGG | 0.599445 | 1_3:+8769138 | Msa0102060:CDS |
| GTGATTGTATTCGGTAAATG+CGG | 0.620340 | 1_3:+8768199 | Msa0102060:CDS |
| AAGGATCTAAGCATGAGAAG+AGG | 0.639289 | 1_3:+8768389 | Msa0102060:CDS |
| GAGAATCCTTCATCATCACG+CGG | 0.748401 | 1_3:+8768295 | Msa0102060:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTTGTCTTATTTTAT+AGG | + | chr1_3:8768492-8768511 | Msa0102060:intron | 10.0% |
| !!! | TATTTTTTGTCTTATTTTAT+AGG | + | chr1_3:8768492-8768511 | Msa0102060:intron | 10.0% |
| !! | AATATAAAAAAGTCTCATTA+TGG | - | chr1_3:8768881-8768900 | None:intergenic | 15.0% |
| !!! | TGAAATTATTAATCTAAAAC+AGG | + | chr1_3:8769092-8769111 | Msa0102060:intron | 15.0% |
| !! | TATAATTTACCTTCAAAATA+AGG | - | chr1_3:8769375-8769394 | None:intergenic | 15.0% |
| !! | AATATAAAAAAGTCTCATTA+TGG | - | chr1_3:8768881-8768900 | None:intergenic | 15.0% |
| !!! | TGAAATTATTAATCTAAAAC+AGG | + | chr1_3:8769092-8769111 | Msa0102060:intron | 15.0% |
| !! | TATAATTTACCTTCAAAATA+AGG | - | chr1_3:8769375-8769394 | None:intergenic | 15.0% |
| !!! | TTTGAATGAATCACAATTTT+TGG | + | chr1_3:8768144-8768163 | Msa0102060:CDS | 20.0% |
| !!! | TGTTGCTACTAATTTTTTTT+TGG | + | chr1_3:8768515-8768534 | Msa0102060:intron | 20.0% |
| !!! | TGATCACTTTTATTTTTGAA+AGG | + | chr1_3:8768707-8768726 | Msa0102060:intron | 20.0% |
| !!! | TAAAATGTATGTGTATTGAT+AGG | + | chr1_3:8769038-8769057 | Msa0102060:intron | 20.0% |
| !! | TTCAAGATAAAGTAGTTAAA+TGG | - | chr1_3:8769076-8769095 | None:intergenic | 20.0% |
| !! | TTTATCTTTGTCAACAAAAA+GGG | - | chr1_3:8769178-8769197 | None:intergenic | 20.0% |
| !! | ATTTATCTTTGTCAACAAAA+AGG | - | chr1_3:8769179-8769198 | None:intergenic | 20.0% |
| !!! | TTTTTGTTGACAAAGATAAA+TGG | + | chr1_3:8769178-8769197 | Msa0102060:CDS | 20.0% |
| !! | ATTTCAAATTATTCTCTTCA+CGG | - | chr1_3:8769260-8769279 | None:intergenic | 20.0% |
| !!! | GAAGAGAATAATTTGAAATT+TGG | + | chr1_3:8769261-8769280 | Msa0102060:CDS | 20.0% |
| !!! | TTTGAATGAATCACAATTTT+TGG | + | chr1_3:8768144-8768163 | Msa0102060:CDS | 20.0% |
| !!! | TGTTGCTACTAATTTTTTTT+TGG | + | chr1_3:8768515-8768534 | Msa0102060:intron | 20.0% |
| !!! | TGATCACTTTTATTTTTGAA+AGG | + | chr1_3:8768707-8768726 | Msa0102060:intron | 20.0% |
| !!! | TAAAATGTATGTGTATTGAT+AGG | + | chr1_3:8769038-8769057 | Msa0102060:intron | 20.0% |
| !! | TTCAAGATAAAGTAGTTAAA+TGG | - | chr1_3:8769076-8769095 | None:intergenic | 20.0% |
| !! | TTTATCTTTGTCAACAAAAA+GGG | - | chr1_3:8769178-8769197 | None:intergenic | 20.0% |
| !! | ATTTATCTTTGTCAACAAAA+AGG | - | chr1_3:8769179-8769198 | None:intergenic | 20.0% |
| !!! | TTTTTGTTGACAAAGATAAA+TGG | + | chr1_3:8769178-8769197 | Msa0102060:CDS | 20.0% |
| !! | ATTTCAAATTATTCTCTTCA+CGG | - | chr1_3:8769260-8769279 | None:intergenic | 20.0% |
| !!! | GAAGAGAATAATTTGAAATT+TGG | + | chr1_3:8769261-8769280 | Msa0102060:CDS | 20.0% |
| !! | TACCTTTTCACAAAACTTAT+GGG | - | chr1_3:8767992-8768011 | None:intergenic | 25.0% |
| !! | ATACCTTTTCACAAAACTTA+TGG | - | chr1_3:8767993-8768012 | None:intergenic | 25.0% |
| !!! | TAAGTTTTGTGAAAAGGTAT+TGG | + | chr1_3:8767993-8768012 | Msa0102060:CDS | 25.0% |
| !! | TATGATGTTACATTTTGCAA+TGG | + | chr1_3:8768094-8768113 | Msa0102060:CDS | 25.0% |
| ! | CTCTTTAATGTGATTGTATT+CGG | + | chr1_3:8768190-8768209 | Msa0102060:CDS | 25.0% |
| !!! | GAATTCTCAATTTTTTTAGC+AGG | + | chr1_3:8768539-8768558 | Msa0102060:intron | 25.0% |
| ! | AAGTAGCTGTAATGATATTA+AGG | + | chr1_3:8768562-8768581 | Msa0102060:CDS | 25.0% |
| ! | CAAAAAATTTCTTCACTTTC+TGG | - | chr1_3:8768607-8768626 | None:intergenic | 25.0% |
| ! | CTATTCTTTGATGAGATTAA+TGG | + | chr1_3:8768813-8768832 | Msa0102060:intron | 25.0% |
| ! | AGTCTCATTATGGTATAATT+TGG | - | chr1_3:8768871-8768890 | None:intergenic | 25.0% |
| ! | TGTTTCTTGACAAATTCATT+TGG | - | chr1_3:8769123-8769142 | None:intergenic | 25.0% |
| ! | TGAATTTGTCAAGAAACATA+TGG | + | chr1_3:8769125-8769144 | Msa0102060:CDS | 25.0% |
| ! | GAGAAAATAACAACTTGAAA+TGG | - | chr1_3:8769330-8769349 | None:intergenic | 25.0% |
| !!! | TCAAGTTGTTATTTTCTCTT+TGG | + | chr1_3:8769332-8769351 | Msa0102060:CDS | 25.0% |
| !!! | TGTTATTTTCTCTTTGGAAA+AGG | + | chr1_3:8769338-8769357 | Msa0102060:CDS | 25.0% |
| !!! | TTGAAAACTCCTTATTTTGA+AGG | + | chr1_3:8769363-8769382 | Msa0102060:CDS | 25.0% |
| ! | TATATTTGATTAGTGTCCAT+CGG | + | chr1_3:8769391-8769410 | Msa0102060:CDS | 25.0% |
| !! | TACCTTTTCACAAAACTTAT+GGG | - | chr1_3:8767992-8768011 | None:intergenic | 25.0% |
| !! | ATACCTTTTCACAAAACTTA+TGG | - | chr1_3:8767993-8768012 | None:intergenic | 25.0% |
| !!! | TAAGTTTTGTGAAAAGGTAT+TGG | + | chr1_3:8767993-8768012 | Msa0102060:CDS | 25.0% |
| !! | TATGATGTTACATTTTGCAA+TGG | + | chr1_3:8768094-8768113 | Msa0102060:CDS | 25.0% |
| ! | CTCTTTAATGTGATTGTATT+CGG | + | chr1_3:8768190-8768209 | Msa0102060:CDS | 25.0% |
| !!! | GAATTCTCAATTTTTTTAGC+AGG | + | chr1_3:8768539-8768558 | Msa0102060:intron | 25.0% |
| ! | AAGTAGCTGTAATGATATTA+AGG | + | chr1_3:8768562-8768581 | Msa0102060:CDS | 25.0% |
| ! | CAAAAAATTTCTTCACTTTC+TGG | - | chr1_3:8768607-8768626 | None:intergenic | 25.0% |
| ! | CTATTCTTTGATGAGATTAA+TGG | + | chr1_3:8768813-8768832 | Msa0102060:intron | 25.0% |
| ! | AGTCTCATTATGGTATAATT+TGG | - | chr1_3:8768871-8768890 | None:intergenic | 25.0% |
| ! | TGTTTCTTGACAAATTCATT+TGG | - | chr1_3:8769123-8769142 | None:intergenic | 25.0% |
| ! | TGAATTTGTCAAGAAACATA+TGG | + | chr1_3:8769125-8769144 | Msa0102060:CDS | 25.0% |
| ! | GAGAAAATAACAACTTGAAA+TGG | - | chr1_3:8769330-8769349 | None:intergenic | 25.0% |
| !!! | TCAAGTTGTTATTTTCTCTT+TGG | + | chr1_3:8769332-8769351 | Msa0102060:CDS | 25.0% |
| !!! | TGTTATTTTCTCTTTGGAAA+AGG | + | chr1_3:8769338-8769357 | Msa0102060:CDS | 25.0% |
| !!! | TTGAAAACTCCTTATTTTGA+AGG | + | chr1_3:8769363-8769382 | Msa0102060:CDS | 25.0% |
| ! | TATATTTGATTAGTGTCCAT+CGG | + | chr1_3:8769391-8769410 | Msa0102060:CDS | 25.0% |
| !! | TTTGTGAAAAGGTATTGGAA+AGG | + | chr1_3:8767998-8768017 | Msa0102060:CDS | 30.0% |
| !!! | TGGTGGAAAAGAAAGTTTTT+TGG | + | chr1_3:8768056-8768075 | Msa0102060:CDS | 30.0% |
| !!! | GGTGGAAAAGAAAGTTTTTT+GGG | + | chr1_3:8768057-8768076 | Msa0102060:CDS | 30.0% |
| ! | ATGTTACATTTTGCAATGGT+TGG | + | chr1_3:8768098-8768117 | Msa0102060:CDS | 30.0% |
| TTCTTACACACTTTCATAGA+CGG | - | chr1_3:8768343-8768362 | None:intergenic | 30.0% | |
| ATCAACTCGAATGAACAAAA+AGG | + | chr1_3:8768370-8768389 | Msa0102060:CDS | 30.0% | |
| TTAGCATCATACATGCAAAA+AGG | - | chr1_3:8768643-8768662 | None:intergenic | 30.0% | |
| ATACATTGATAGAGATCTCT+TGG | + | chr1_3:8768667-8768686 | Msa0102060:CDS | 30.0% | |
| CCAATCACAATCTATTATGT+AGG | - | chr1_3:8768928-8768947 | None:intergenic | 30.0% | |
| CCTACATAATAGATTGTGAT+TGG | + | chr1_3:8768925-8768944 | Msa0102060:intron | 30.0% | |
| !! | TGTGTTTTTGTGCTAAACAA+AGG | + | chr1_3:8769291-8769310 | Msa0102060:CDS | 30.0% |
| !! | TTTGTGAAAAGGTATTGGAA+AGG | + | chr1_3:8767998-8768017 | Msa0102060:CDS | 30.0% |
| !!! | TGGTGGAAAAGAAAGTTTTT+TGG | + | chr1_3:8768056-8768075 | Msa0102060:CDS | 30.0% |
| !!! | GGTGGAAAAGAAAGTTTTTT+GGG | + | chr1_3:8768057-8768076 | Msa0102060:CDS | 30.0% |
| ! | ATGTTACATTTTGCAATGGT+TGG | + | chr1_3:8768098-8768117 | Msa0102060:CDS | 30.0% |
| TTCTTACACACTTTCATAGA+CGG | - | chr1_3:8768343-8768362 | None:intergenic | 30.0% | |
| ATCAACTCGAATGAACAAAA+AGG | + | chr1_3:8768370-8768389 | Msa0102060:CDS | 30.0% | |
| TTAGCATCATACATGCAAAA+AGG | - | chr1_3:8768643-8768662 | None:intergenic | 30.0% | |
| ATACATTGATAGAGATCTCT+TGG | + | chr1_3:8768667-8768686 | Msa0102060:CDS | 30.0% | |
| CCAATCACAATCTATTATGT+AGG | - | chr1_3:8768928-8768947 | None:intergenic | 30.0% | |
| CCTACATAATAGATTGTGAT+TGG | + | chr1_3:8768925-8768944 | Msa0102060:intron | 30.0% | |
| !! | TGTGTTTTTGTGCTAAACAA+AGG | + | chr1_3:8769291-8769310 | Msa0102060:CDS | 30.0% |
| !! | TGCCCATAAGTTTTGTGAAA+AGG | + | chr1_3:8767987-8768006 | Msa0102060:CDS | 35.0% |
| TAACAAACCCAGTTACTCTA+AGG | + | chr1_3:8768023-8768042 | Msa0102060:CDS | 35.0% | |
| TTGGAAACCTTAGAGTAACT+GGG | - | chr1_3:8768033-8768052 | None:intergenic | 35.0% | |
| TTTGGAAACCTTAGAGTAAC+TGG | - | chr1_3:8768034-8768053 | None:intergenic | 35.0% | |
| !! | TACTCTAAGGTTTCCAAACT+TGG | + | chr1_3:8768036-8768055 | Msa0102060:CDS | 35.0% |
| ! | ACTTTCTTTTCCACCAAGTT+TGG | - | chr1_3:8768052-8768071 | None:intergenic | 35.0% |
| GTGATTGTATTCGGTAAATG+CGG | + | chr1_3:8768199-8768218 | Msa0102060:CDS | 35.0% | |
| ! | CTTCACTAGTTTCTCTTGAA+GGG | - | chr1_3:8768240-8768259 | None:intergenic | 35.0% |
| ! | TCTTCACTAGTTTCTCTTGA+AGG | - | chr1_3:8768241-8768260 | None:intergenic | 35.0% |
| !! | GTTTTTGAGCATGTGAACAA+TGG | + | chr1_3:8768430-8768449 | Msa0102060:CDS | 35.0% |
| CAAGAAACATATGGACATGA+TGG | + | chr1_3:8769134-8769153 | Msa0102060:CDS | 35.0% | |
| ! | AAACATATGGACATGATGGA+AGG | + | chr1_3:8769138-8769157 | Msa0102060:CDS | 35.0% |
| AAACAATCTGCACTAACTTG+TGG | + | chr1_3:8769222-8769241 | Msa0102060:CDS | 35.0% | |
| !! | TGCCCATAAGTTTTGTGAAA+AGG | + | chr1_3:8767987-8768006 | Msa0102060:CDS | 35.0% |
| TAACAAACCCAGTTACTCTA+AGG | + | chr1_3:8768023-8768042 | Msa0102060:CDS | 35.0% | |
| TTGGAAACCTTAGAGTAACT+GGG | - | chr1_3:8768033-8768052 | None:intergenic | 35.0% | |
| TTTGGAAACCTTAGAGTAAC+TGG | - | chr1_3:8768034-8768053 | None:intergenic | 35.0% | |
| !! | TACTCTAAGGTTTCCAAACT+TGG | + | chr1_3:8768036-8768055 | Msa0102060:CDS | 35.0% |
| ! | ACTTTCTTTTCCACCAAGTT+TGG | - | chr1_3:8768052-8768071 | None:intergenic | 35.0% |
| GTGATTGTATTCGGTAAATG+CGG | + | chr1_3:8768199-8768218 | Msa0102060:CDS | 35.0% | |
| ! | CTTCACTAGTTTCTCTTGAA+GGG | - | chr1_3:8768240-8768259 | None:intergenic | 35.0% |
| ! | TCTTCACTAGTTTCTCTTGA+AGG | - | chr1_3:8768241-8768260 | None:intergenic | 35.0% |
| !! | GTTTTTGAGCATGTGAACAA+TGG | + | chr1_3:8768430-8768449 | Msa0102060:CDS | 35.0% |
| CAAGAAACATATGGACATGA+TGG | + | chr1_3:8769134-8769153 | Msa0102060:CDS | 35.0% | |
| ! | AAACATATGGACATGATGGA+AGG | + | chr1_3:8769138-8769157 | Msa0102060:CDS | 35.0% |
| AAACAATCTGCACTAACTTG+TGG | + | chr1_3:8769222-8769241 | Msa0102060:CDS | 35.0% | |
| ! | TCTAAGGTTTCCAAACTTGG+TGG | + | chr1_3:8768039-8768058 | Msa0102060:CDS | 40.0% |
| AAGGATCTAAGCATGAGAAG+AGG | + | chr1_3:8768389-8768408 | Msa0102060:CDS | 40.0% | |
| TTGAGCATGTGAACAATGGT+TGG | + | chr1_3:8768434-8768453 | Msa0102060:intron | 40.0% | |
| ! | AATCTGCACTAACTTGTGGT+TGG | + | chr1_3:8769226-8769245 | Msa0102060:CDS | 40.0% |
| ! | TCTAAGGTTTCCAAACTTGG+TGG | + | chr1_3:8768039-8768058 | Msa0102060:CDS | 40.0% |
| AAGGATCTAAGCATGAGAAG+AGG | + | chr1_3:8768389-8768408 | Msa0102060:CDS | 40.0% | |
| TTGAGCATGTGAACAATGGT+TGG | + | chr1_3:8768434-8768453 | Msa0102060:intron | 40.0% | |
| ! | AATCTGCACTAACTTGTGGT+TGG | + | chr1_3:8769226-8769245 | Msa0102060:CDS | 40.0% |
| GAGAATCCTTCATCATCACG+CGG | + | chr1_3:8768295-8768314 | Msa0102060:CDS | 45.0% | |
| !! | CTTTTACCGCGTGATGATGA+AGG | - | chr1_3:8768304-8768323 | None:intergenic | 45.0% |
| CTTCATCATCACGCGGTAAA+AGG | + | chr1_3:8768302-8768321 | Msa0102060:CDS | 45.0% | |
| GAGAATCCTTCATCATCACG+CGG | + | chr1_3:8768295-8768314 | Msa0102060:CDS | 45.0% | |
| !! | CTTTTACCGCGTGATGATGA+AGG | - | chr1_3:8768304-8768323 | None:intergenic | 45.0% |
| CTTCATCATCACGCGGTAAA+AGG | + | chr1_3:8768302-8768321 | Msa0102060:CDS | 45.0% | |
| CACACTTTCATAGACGGTGC+TGG | - | chr1_3:8768337-8768356 | None:intergenic | 50.0% | |
| CACACTTTCATAGACGGTGC+TGG | - | chr1_3:8768337-8768356 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 8767983 | 8769425 | 8767983 | ID=Msa0102060;Name=Msa0102060 |
| chr1_3 | mRNA | 8767983 | 8769425 | 8767983 | ID=Msa0102060-mRNA-1;Parent=Msa0102060;Name=Msa0102060-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0|0|1|1|1|3|0|302 |
| chr1_3 | exon | 8767983 | 8768451 | 8767983 | ID=Msa0102060-mRNA-1:exon:3494;Parent=Msa0102060-mRNA-1 |
| chr1_3 | exon | 8768561 | 8768688 | 8768561 | ID=Msa0102060-mRNA-1:exon:3495;Parent=Msa0102060-mRNA-1 |
| chr1_3 | exon | 8769114 | 8769425 | 8769114 | ID=Msa0102060-mRNA-1:exon:3496;Parent=Msa0102060-mRNA-1 |
| chr1_3 | CDS | 8767983 | 8768451 | 8767983 | ID=Msa0102060-mRNA-1:cds;Parent=Msa0102060-mRNA-1 |
| chr1_3 | CDS | 8768561 | 8768688 | 8768561 | ID=Msa0102060-mRNA-1:cds;Parent=Msa0102060-mRNA-1 |
| chr1_3 | CDS | 8769114 | 8769425 | 8769114 | ID=Msa0102060-mRNA-1:cds;Parent=Msa0102060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
