AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0102230

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0102230 MtrunA17_Chr1g0156321 74.792 361 25 5 113 413 330 684 3.64e-177 517
Msa0102230 MtrunA17_Chr1g0156321 87.931 58 7 0 47 104 202 259 3.34e-25 108
Msa0102230 MtrunA17_Chr1g0156301 92.523 107 8 0 307 413 1 107 5.90e-65 209
Msa0102230 MtrunA17_Chr3g0109391 68.966 58 18 0 47 104 186 243 8.24e-18 86.3
Msa0102230 MtrunA17_Chr3g0109391 51.429 70 33 1 113 181 314 383 7.52e-16 80.1
Msa0102230 MtrunA17_Chr5g0433301 67.241 58 19 0 47 104 184 241 4.06e-17 84.0
Msa0102230 MtrunA17_Chr5g0433301 52.857 70 32 1 113 181 312 381 5.96e-17 83.6
Msa0102230 MtrunA17_Chr2g0285461 67.241 58 19 0 47 104 183 240 4.11e-17 84.0
Msa0102230 MtrunA17_Chr2g0285461 50.000 70 34 1 113 181 311 380 2.23e-15 78.6
Msa0102230 MtrunA17_Chr4g0070181 69.811 53 16 0 47 99 182 234 1.09e-16 82.8
Msa0102230 MtrunA17_Chr4g0070181 58.333 48 20 0 113 160 309 356 1.38e-14 76.3
Msa0102230 MtrunA17_Chr2g0276781 50.000 76 34 1 47 122 181 252 1.18e-16 82.4
Msa0102230 MtrunA17_Chr8g0389081 72.549 51 14 0 47 97 192 242 1.29e-16 82.8
Msa0102230 MtrunA17_Chr8g0389081 56.250 48 21 0 113 160 320 367 1.54e-14 76.3
Msa0102230 MtrunA17_Chr8g0385791 55.385 65 29 0 47 111 218 282 1.42e-16 82.4
Msa0102230 MtrunA17_Chr8g0376771 65.517 58 20 0 47 104 182 239 2.90e-16 81.6
Msa0102230 MtrunA17_Chr8g0376771 51.429 70 33 1 113 181 310 379 4.73e-16 80.9
Msa0102230 MtrunA17_Chr2g0301251 66.038 53 18 0 47 99 182 234 1.14e-15 79.7
Msa0102230 MtrunA17_Chr2g0301251 60.417 48 19 0 113 160 309 356 1.14e-14 76.6
Msa0102230 MtrunA17_Chr8g0346711 58.621 58 24 0 47 104 187 244 2.81e-15 78.2
Msa0102230 MtrunA17_Chr2g0326281 51.724 58 28 0 47 104 237 294 1.93e-13 72.4
Msa0102230 MtrunA17_Chr7g0239061 32.184 174 58 8 47 160 172 345 2.46e-13 72.0
Msa0102230 MtrunA17_Chr4g0029671 51.724 58 28 0 47 104 222 279 5.18e-13 71.2
Msa0102230 MtrunA17_Chr4g0009751 63.265 49 18 0 47 95 177 225 1.15e-12 70.1
Msa0102230 MtrunA17_Chr2g0282961 49.231 65 32 1 113 176 341 405 2.75e-11 65.5
Msa0102230 MtrunA17_Chr1g0156311 80.645 31 6 0 138 168 59 89 4.54e-11 58.9
Msa0102230 MtrunA17_Chr7g0264171 55.102 49 22 0 47 95 187 235 5.01e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0102230 AT1G19850.2 49.194 248 62 5 47 230 203 450 9.69e-64 221
Msa0102230 AT1G19850.1 49.194 248 62 5 47 230 214 461 9.87e-64 221
Msa0102230 AT2G46530.2 35.326 184 57 5 47 169 93 275 1.43e-24 106
Msa0102230 AT2G46530.1 35.326 184 57 5 47 169 180 362 1.98e-24 106
Msa0102230 AT2G46530.3 35.326 184 57 5 47 169 201 383 2.31e-24 106
Msa0102230 AT5G62000.2 34.857 175 53 2 47 160 220 394 2.34e-24 106
Msa0102230 AT5G62000.5 34.857 175 53 2 47 160 220 394 2.34e-24 106
Msa0102230 AT5G62000.3 34.857 175 53 2 47 160 220 394 2.34e-24 106
Msa0102230 AT5G62000.1 34.857 175 53 2 47 160 220 394 2.34e-24 106
Msa0102230 AT5G62000.4 34.857 175 53 2 47 160 220 394 3.24e-24 106
Msa0102230 AT3G61830.2 35.260 173 52 4 47 160 133 304 2.50e-23 102
Msa0102230 AT3G61830.1 35.260 173 52 4 47 160 184 355 3.53e-23 102
Msa0102230 AT2G33860.2 33.520 179 58 3 47 164 58 236 7.47e-22 97.8
Msa0102230 AT2G33860.1 33.520 179 58 3 47 164 215 393 9.17e-22 98.6
Msa0102230 AT4G23980.2 35.260 173 52 3 47 160 172 343 2.19e-20 94.4
Msa0102230 AT4G23980.1 35.260 173 52 3 47 160 172 343 2.24e-20 94.4
Msa0102230 AT1G34410.1 32.335 167 53 4 52 159 187 352 3.13e-18 87.8
Msa0102230 AT1G35540.1 30.814 172 59 4 47 159 182 352 6.96e-18 86.7
Msa0102230 AT1G35520.1 32.335 167 53 4 52 159 187 352 1.56e-17 85.5
Msa0102230 AT1G35240.1 31.737 167 54 4 52 159 187 352 1.97e-17 85.1
Msa0102230 AT1G19220.1 71.698 53 15 0 47 99 182 234 2.50e-17 85.5
Msa0102230 AT1G19220.1 50.667 75 36 1 113 186 309 383 5.39e-17 84.3
Msa0102230 AT5G60450.2 31.461 178 62 4 47 164 209 386 2.92e-17 84.7
Msa0102230 AT5G60450.1 31.461 178 62 4 47 164 233 410 3.25e-17 84.7
Msa0102230 AT5G37020.2 52.857 70 32 1 113 181 310 379 3.91e-17 84.3
Msa0102230 AT5G37020.2 65.517 58 20 0 47 104 182 239 8.00e-17 83.6
Msa0102230 AT5G37020.3 52.857 70 32 1 113 181 215 284 4.04e-17 84.3
Msa0102230 AT5G37020.3 65.517 58 20 0 47 104 87 144 7.83e-17 83.6
Msa0102230 AT1G30330.1 67.241 58 19 0 47 104 183 240 4.13e-17 84.7
Msa0102230 AT1G30330.1 50.000 70 34 1 113 181 311 380 4.73e-15 78.2
Msa0102230 AT1G30330.3 67.241 58 19 0 47 104 185 242 4.17e-17 84.7
Msa0102230 AT1G30330.3 50.000 70 34 1 113 181 313 382 4.86e-15 78.2
Msa0102230 AT1G30330.2 67.241 58 19 0 47 104 185 242 4.17e-17 84.7
Msa0102230 AT1G30330.2 50.000 70 34 1 113 181 313 382 4.86e-15 78.2
Msa0102230 AT5G37020.1 52.857 70 32 1 113 181 310 379 4.28e-17 84.3
Msa0102230 AT5G37020.1 65.517 58 20 0 47 104 182 239 8.07e-17 83.6
Msa0102230 AT1G59750.4 60.656 61 24 0 47 107 180 240 5.26e-17 84.0
Msa0102230 AT1G59750.2 58.730 63 26 0 47 109 180 242 5.27e-17 84.0
Msa0102230 AT1G59750.1 58.730 63 26 0 47 109 180 242 5.29e-17 84.0
Msa0102230 AT1G59750.3 58.730 63 26 0 47 109 180 242 5.29e-17 84.0
Msa0102230 AT5G20730.2 69.811 53 16 0 47 99 183 235 2.40e-16 82.4
Msa0102230 AT5G20730.2 62.500 48 18 0 113 160 310 357 4.37e-15 78.2
Msa0102230 AT5G20730.3 69.811 53 16 0 47 99 183 235 2.43e-16 82.4
Msa0102230 AT5G20730.3 62.500 48 18 0 113 160 311 358 4.35e-15 78.2
Msa0102230 AT5G20730.1 69.811 53 16 0 47 99 183 235 2.64e-16 82.0
Msa0102230 AT5G20730.1 62.500 48 18 0 113 160 311 358 4.73e-15 78.2
Msa0102230 AT1G34310.1 58.182 55 23 0 52 106 187 241 2.51e-14 75.5
Msa0102230 AT1G34390.1 60.000 45 18 0 52 96 185 229 3.22e-11 65.9

Find 90 sgRNAs with CRISPR-Local

Find 300 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCGTTACAATCCGGATATT+TGG 0.204347 1_3:-8929700 Msa0102230:CDS
TTTATTAAAGTACCCGAAAA+TGG 0.240625 1_3:-8929560 Msa0102230:CDS
CATATTGATCCCACACTTCT+TGG 0.244067 1_3:+8928908 None:intergenic
TAGCATTGAAACAGGTAAAA+AGG 0.280677 1_3:+8930610 None:intergenic
TGCTTGTTGGAGATGATCCC+TGG 0.287087 1_3:-8928684 Msa0102230:CDS
TTTGATTGTGATATGTTAAT+TGG 0.294522 1_3:+8929151 None:intergenic
GGAAAGATGAAAAGGCTTTC+CGG 0.303613 1_3:+8929747 None:intergenic
AGCAAAATAGGGTTAGTGTT+TGG 0.311735 1_3:-8929782 Msa0102230:CDS
GCAAAATAGGGTTAGTGTTT+GGG 0.321539 1_3:-8929781 Msa0102230:CDS
TTCTAAGTGGCGAAATATTC+AGG 0.333372 1_3:-8929965 Msa0102230:intron
CCGTTACAATCCGGATATTT+GGG 0.343089 1_3:-8929699 Msa0102230:intron
TGAGCAAAAGTCGTCGAAAA+TGG 0.355292 1_3:+8928765 None:intergenic
GGTGTGGTGATAAGCAAAAT+AGG 0.358353 1_3:-8929794 Msa0102230:CDS
GTTTGTTTGTCGGATCAAAA+AGG 0.368222 1_3:-8930454 Msa0102230:CDS
ACCGGAAAAGTTGCAGCCTT+TGG 0.379971 1_3:-8929280 Msa0102230:CDS
GCCGTTTACAATAGAAGAAT+CGG 0.384417 1_3:+8929017 None:intergenic
CCCGATTCTTCTATTGTAAA+CGG 0.405695 1_3:-8929018 Msa0102230:CDS
AACAATAATAGCATTGAAAC+AGG 0.406401 1_3:+8930602 None:intergenic
CTTAGAACCAGGCCACCTTA+AGG 0.409021 1_3:+8929981 None:intergenic
TTAGAACCAGGCCACCTTAA+GGG 0.411042 1_3:+8929982 None:intergenic
GAGAGTGATGTTCTGCTTGT+TGG 0.411875 1_3:-8928697 Msa0102230:CDS
TTGTAAATAAACAGGCTGAA+TGG 0.413200 1_3:-8929827 Msa0102230:intron
TGTAAATAAACAGGCTGAAT+GGG 0.419597 1_3:-8929826 Msa0102230:intron
AAAATGGTGTTTGAAGTAGA+AGG 0.438666 1_3:+8928781 None:intergenic
CACACTTCTTGGTTCATTGA+GGG 0.439145 1_3:+8928919 None:intergenic
TTTAGACTTGAAGTCAAAGA+AGG 0.444901 1_3:+8929726 None:intergenic
AAGAAACTTACCCAAATATC+CGG 0.446011 1_3:+8929689 None:intergenic
CTTTGACTTCAAGTCTAAAA+CGG 0.448239 1_3:-8929722 Msa0102230:CDS
TACATATACTAATTTCCATC+TGG 0.450352 1_3:+8928726 None:intergenic
CGCAATTGCGAGTTGGTGTA+AGG 0.454613 1_3:-8930110 Msa0102230:CDS
ATTGTTGAAAAGTGACCAAC+CGG 0.456819 1_3:-8929298 Msa0102230:intron
GTCGATCCCTTAAGGTGGCC+TGG 0.457511 1_3:-8929988 Msa0102230:CDS
TTGTTGCAGCTTTCAAAAGA+AGG 0.464867 1_3:+8929198 None:intergenic
TCAAAGAAGGAAAGATGAAA+AGG 0.471141 1_3:+8929739 None:intergenic
AAGAGACACCTTCTCACAAC+GGG 0.474222 1_3:-8930482 Msa0102230:CDS
CATTGACACAAATTTCACTT+TGG 0.474844 1_3:+8928842 None:intergenic
AGATATATGGGTACAATTGT+TGG 0.476234 1_3:-8930021 Msa0102230:CDS
CCACACTTCTTGGTTCATTG+AGG 0.479579 1_3:+8928918 None:intergenic
TGATAGTGTGAGTACTACTA+TGG 0.489008 1_3:-8928809 Msa0102230:CDS
TGTTTGGGAGGTCGAGCCTC+CGG 0.489847 1_3:-8929766 Msa0102230:CDS
CTAAAACGGCCGTTACAATC+CGG 0.494047 1_3:-8929708 Msa0102230:CDS
TGTATATCAACTACTGATGA+TGG 0.494800 1_3:+8930060 None:intergenic
CAGGCTGAATGGGATGAGCC+AGG 0.504340 1_3:-8929816 Msa0102230:CDS
ACGGGTTGGAGTTTGTTTGT+CGG 0.505288 1_3:-8930464 Msa0102230:CDS
GGGATGTCAAACATATGATC+AGG 0.507435 1_3:+8929219 None:intergenic
GTGTGGTGATAAGCAAAATA+GGG 0.509449 1_3:-8929793 Msa0102230:CDS
TTGGTTCATTGAGGGTATAG+AGG 0.512791 1_3:+8928927 None:intergenic
CGATTGTTGTTCACAACCTG+TGG 0.512916 1_3:+8930635 None:intergenic
CCGTTTACAATAGAAGAATC+GGG 0.517995 1_3:+8929018 None:intergenic
TGGTAAAGATTCTGGTAGGA+AGG 0.523481 1_3:+8930686 None:intergenic
TGGTTCATTGAGGGTATAGA+GGG 0.525545 1_3:+8928928 None:intergenic
GCTTGTTGGAGATGATCCCT+GGG 0.527109 1_3:-8928683 Msa0102230:CDS
AGGGTAAGAAACTTACTCCC+AGG 0.529099 1_3:+8928666 None:intergenic
CATTCGTCAACGTCTAGCTC+AGG 0.532532 1_3:+8928988 None:intergenic
TTAGTGATGTCGATCCCTTA+AGG 0.537210 1_3:-8929996 Msa0102230:CDS
GAATGGGATGAGCCAGGGTG+TGG 0.543031 1_3:-8929810 Msa0102230:CDS
CCCAAATATCCGGATTGTAA+CGG 0.559486 1_3:+8929699 None:intergenic
TACTCGCTCATACTAGTCCA+TGG 0.559996 1_3:-8929104 Msa0102230:CDS
TGTTGCAGCTTTCAAAAGAA+GGG 0.560556 1_3:+8929199 None:intergenic
CTGAGCTAGACGTTGACGAA+TGG 0.571956 1_3:-8928987 Msa0102230:CDS
AACTCCAACCCGTTGTGAGA+AGG 0.573060 1_3:+8930474 None:intergenic
CTCAATGAACCAAGAAGTGT+GGG 0.573553 1_3:-8928917 Msa0102230:CDS
ATATTTCGCCACTTAGAACC+AGG 0.586883 1_3:+8929970 None:intergenic
GACACCTTCTCACAACGGGT+TGG 0.588416 1_3:-8930478 Msa0102230:CDS
TGAGGTTGCTGCATACTCCA+TGG 0.590974 1_3:+8929087 None:intergenic
TTGTGATGCAGAAAATGAGT+GGG 0.592216 1_3:-8929603 Msa0102230:intron
AAATGGTGTTTGAAGTAGAA+GGG 0.593790 1_3:+8928782 None:intergenic
TCTATCTAAGAATTATGGGA+TGG 0.594995 1_3:-8930727 None:intergenic
TGAAGGATAAAGGTTCCAGA+TGG 0.600907 1_3:-8928741 Msa0102230:CDS
ATAGAGGGATTCACTACTTG+AGG 0.600944 1_3:+8928943 None:intergenic
TTACAATAGAAGAATCGGGT+TGG 0.604117 1_3:+8929022 None:intergenic
AGGCTGAATGGGATGAGCCA+GGG 0.604797 1_3:-8929815 Msa0102230:CDS
ATTAAAGTACCCGAAAATGG+AGG 0.613065 1_3:-8929557 Msa0102230:CDS
CCTCAATGAACCAAGAAGTG+TGG 0.613123 1_3:-8928918 Msa0102230:CDS
GAGAAGTCGCAATTGCGAGT+TGG 0.615554 1_3:-8930117 Msa0102230:CDS
GGGTAAGAAACTTACTCCCA+GGG 0.623236 1_3:+8928667 None:intergenic
TGGACCATGTCAATCAGTTG+AGG 0.629987 1_3:+8929042 None:intergenic
AAATAGGGTTAGTGTTTGGG+AGG 0.633079 1_3:-8929778 Msa0102230:CDS
TAAGGTGGCCTGGTTCTAAG+TGG 0.634814 1_3:-8929978 Msa0102230:CDS
ACCCGAAAATGGAGGAACAA+TGG 0.635146 1_3:-8929549 Msa0102230:CDS
TTCTTGGTAAAGATTCTGGT+AGG 0.647899 1_3:+8930682 None:intergenic
TAATTCAAAATTAGAATCCG+AGG 0.657221 1_3:-8929247 Msa0102230:CDS
GACATTGATGATTCTAACTG+AGG 0.669961 1_3:+8929069 None:intergenic
ACATCCTCAACTGATTGACA+TGG 0.679013 1_3:-8929046 Msa0102230:CDS
GAAGAGACACCTTCTCACAA+CGG 0.684005 1_3:-8930483 Msa0102230:CDS
TTTGTGATGCAGAAAATGAG+TGG 0.686133 1_3:-8929604 Msa0102230:intron
GTGATGTCGATCCCTTAAGG+TGG 0.694797 1_3:-8929993 Msa0102230:CDS
CATATGATCAGGTAACACCT+CGG 0.718756 1_3:+8929230 None:intergenic
AAGATGAAAAGGCTTTCCGG+AGG 0.719876 1_3:+8929750 None:intergenic
TGTGATGCAGAAAATGAGTG+GGG 0.728289 1_3:-8929602 Msa0102230:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAAGACTAATTATTTTGA+AGG + chr1_3:8928842-8928861 None:intergenic 15.0%
!!! TAATTTTGAATTATCAGTTT+TGG + chr1_3:8930137-8930156 None:intergenic 15.0%
!!! TTTAAGACTAATTATTTTGA+AGG + chr1_3:8928842-8928861 None:intergenic 15.0%
!!! TAATTTTGAATTATCAGTTT+TGG + chr1_3:8930137-8930156 None:intergenic 15.0%
!! AAATTTCCTTGTAAATAAAC+AGG - chr1_3:8929556-8929575 Msa0102230:CDS 20.0%
!! TTTGATTGTGATATGTTAAT+TGG + chr1_3:8930243-8930262 None:intergenic 20.0%
!! AAATTTCCTTGTAAATAAAC+AGG - chr1_3:8929556-8929575 Msa0102230:CDS 20.0%
!! TTTGATTGTGATATGTTAAT+TGG + chr1_3:8930243-8930262 None:intergenic 20.0%
!! AACAATAATAGCATTGAAAC+AGG + chr1_3:8928792-8928811 None:intergenic 25.0%
!! AATGTAATGGTTTTCGATAT+TGG - chr1_3:8929145-8929164 Msa0102230:CDS 25.0%
!! ATGTAATGGTTTTCGATATT+GGG - chr1_3:8929146-8929165 Msa0102230:CDS 25.0%
! TGTTATGTAGAGATGATTAT+TGG + chr1_3:8929217-8929236 None:intergenic 25.0%
! TCAGTAAATGACTAATTGTA+TGG - chr1_3:8929485-8929504 Msa0102230:CDS 25.0%
!!! AAGTACAAGACATTTTGATA+AGG + chr1_3:8929743-8929762 None:intergenic 25.0%
!! GATCACTAATAGAGTTATTT+TGG - chr1_3:8929763-8929782 Msa0102230:CDS 25.0%
!!! TTTTCGGGTACTTTAATAAA+GGG + chr1_3:8929831-8929850 None:intergenic 25.0%
!!! ATTTTCGGGTACTTTAATAA+AGG + chr1_3:8929832-8929851 None:intergenic 25.0%
!! TTTATTAAAGTACCCGAAAA+TGG - chr1_3:8929831-8929850 Msa0102230:intron 25.0%
!! ATGTTTTCTTGGTAAAGATT+TGG + chr1_3:8928717-8928736 None:intergenic 25.0%
!! AGATGTTTTCTATAAACCAT+AGG - chr1_3:8929910-8929929 Msa0102230:intron 25.0%
!!! TGCATGTTTTAGGTATTATT+AGG + chr1_3:8930070-8930089 None:intergenic 25.0%
! TAATTCAAAATTAGAATCCG+AGG - chr1_3:8930144-8930163 Msa0102230:intron 25.0%
! CAACATTGAAAAAGTGAATA+CGG - chr1_3:8930213-8930232 Msa0102230:intron 25.0%
!!! ATGAATTTTGACTTTGGTTT+TGG + chr1_3:8930267-8930286 None:intergenic 25.0%
! TACATATACTAATTTCCATC+TGG + chr1_3:8930668-8930687 None:intergenic 25.0%
!! AACAATAATAGCATTGAAAC+AGG + chr1_3:8928792-8928811 None:intergenic 25.0%
!! AATGTAATGGTTTTCGATAT+TGG - chr1_3:8929145-8929164 Msa0102230:CDS 25.0%
!! ATGTAATGGTTTTCGATATT+GGG - chr1_3:8929146-8929165 Msa0102230:CDS 25.0%
! TGTTATGTAGAGATGATTAT+TGG + chr1_3:8929217-8929236 None:intergenic 25.0%
! TCAGTAAATGACTAATTGTA+TGG - chr1_3:8929485-8929504 Msa0102230:CDS 25.0%
!!! AAGTACAAGACATTTTGATA+AGG + chr1_3:8929743-8929762 None:intergenic 25.0%
!! GATCACTAATAGAGTTATTT+TGG - chr1_3:8929763-8929782 Msa0102230:CDS 25.0%
!!! TTTTCGGGTACTTTAATAAA+GGG + chr1_3:8929831-8929850 None:intergenic 25.0%
!!! ATTTTCGGGTACTTTAATAA+AGG + chr1_3:8929832-8929851 None:intergenic 25.0%
!! TTTATTAAAGTACCCGAAAA+TGG - chr1_3:8929831-8929850 Msa0102230:intron 25.0%
!! ATGTTTTCTTGGTAAAGATT+TGG + chr1_3:8928717-8928736 None:intergenic 25.0%
!! AGATGTTTTCTATAAACCAT+AGG - chr1_3:8929910-8929929 Msa0102230:intron 25.0%
!!! TGCATGTTTTAGGTATTATT+AGG + chr1_3:8930070-8930089 None:intergenic 25.0%
! TAATTCAAAATTAGAATCCG+AGG - chr1_3:8930144-8930163 Msa0102230:intron 25.0%
! CAACATTGAAAAAGTGAATA+CGG - chr1_3:8930213-8930232 Msa0102230:intron 25.0%
!!! ATGAATTTTGACTTTGGTTT+TGG + chr1_3:8930267-8930286 None:intergenic 25.0%
! TACATATACTAATTTCCATC+TGG + chr1_3:8930668-8930687 None:intergenic 25.0%
! TGTTTTCTTGGTAAAGATTC+TGG + chr1_3:8928716-8928735 None:intergenic 30.0%
! ACATCTTCATCATGTTTTCT+TGG + chr1_3:8928728-8928747 None:intergenic 30.0%
! GAAGATGTTTTATAAACCAC+AGG - chr1_3:8928740-8928759 Msa0102230:CDS 30.0%
! TAGCATTGAAACAGGTAAAA+AGG + chr1_3:8928784-8928803 None:intergenic 30.0%
! GATCCTTACATTTTTCATGT+AGG - chr1_3:8928879-8928898 Msa0102230:CDS 30.0%
TGACCTACATGAAAAATGTA+AGG + chr1_3:8928885-8928904 None:intergenic 30.0%
! CAACATTTTACACAACTCTT+AGG - chr1_3:8929028-8929047 Msa0102230:CDS 30.0%
CTCTTAGGTTATCTGAATAT+AGG - chr1_3:8929043-8929062 Msa0102230:CDS 30.0%
!!! GACTTGTTTTTTTTTCTCCA+TGG - chr1_3:8929113-8929132 Msa0102230:CDS 30.0%
TTTCGATATTGGGAAAATTG+TGG - chr1_3:8929156-8929175 Msa0102230:CDS 30.0%
TGATGTGTCAATTGTTTCAA+GGG - chr1_3:8929249-8929268 Msa0102230:CDS 30.0%
TGTATATCAACTACTGATGA+TGG + chr1_3:8929334-8929353 None:intergenic 30.0%
! CTCTTTTTCTGCAGATATAT+GGG - chr1_3:8929358-8929377 Msa0102230:intron 30.0%
AGATATATGGGTACAATTGT+TGG - chr1_3:8929370-8929389 Msa0102230:intron 30.0%
ACTGATAGATCTTAATGACA+GGG + chr1_3:8929470-8929489 None:intergenic 30.0%
TACTGATAGATCTTAATGAC+AGG + chr1_3:8929471-8929490 None:intergenic 30.0%
TAAGATATACTCTGTTGAAC+TGG - chr1_3:8929526-8929545 Msa0102230:CDS 30.0%
ATTCAGCCTGTTTATTTACA+AGG + chr1_3:8929565-8929584 None:intergenic 30.0%
TTGTAAATAAACAGGCTGAA+TGG - chr1_3:8929564-8929583 Msa0102230:CDS 30.0%
TGTAAATAAACAGGCTGAAT+GGG - chr1_3:8929565-8929584 Msa0102230:CDS 30.0%
TCAAAGAAGGAAAGATGAAA+AGG + chr1_3:8929655-8929674 None:intergenic 30.0%
TTTAGACTTGAAGTCAAAGA+AGG + chr1_3:8929668-8929687 None:intergenic 30.0%
! CTTTGACTTCAAGTCTAAAA+CGG - chr1_3:8929669-8929688 Msa0102230:intron 30.0%
AAGAAACTTACCCAAATATC+CGG + chr1_3:8929705-8929724 None:intergenic 30.0%
!! ACAAGACATTTTGATAAGGT+GGG + chr1_3:8929739-8929758 None:intergenic 30.0%
!! TACAAGACATTTTGATAAGG+TGG + chr1_3:8929740-8929759 None:intergenic 30.0%
! ACATCTTCATCATGTTTTCT+TGG + chr1_3:8928728-8928747 None:intergenic 30.0%
TTGTTGCATGATAGGTAAAA+AGG + chr1_3:8929954-8929973 None:intergenic 30.0%
! CAACAATGAATGCATGTTTT+AGG + chr1_3:8930080-8930099 None:intergenic 30.0%
!!! CGAGTAATGAATTTTGACTT+TGG + chr1_3:8930273-8930292 None:intergenic 30.0%
CATTGACACAAATTTCACTT+TGG + chr1_3:8930552-8930571 None:intergenic 30.0%
! AAATGGTGTTTGAAGTAGAA+GGG + chr1_3:8930612-8930631 None:intergenic 30.0%
! AAAATGGTGTTTGAAGTAGA+AGG + chr1_3:8930613-8930632 None:intergenic 30.0%
! TTTTGCTCAATGAAGGATAA+AGG - chr1_3:8930640-8930659 Msa0102230:CDS 30.0%
! TGTTTTCTTGGTAAAGATTC+TGG + chr1_3:8928716-8928735 None:intergenic 30.0%
! ACATCTTCATCATGTTTTCT+TGG + chr1_3:8928728-8928747 None:intergenic 30.0%
! GAAGATGTTTTATAAACCAC+AGG - chr1_3:8928740-8928759 Msa0102230:CDS 30.0%
! TAGCATTGAAACAGGTAAAA+AGG + chr1_3:8928784-8928803 None:intergenic 30.0%
! GATCCTTACATTTTTCATGT+AGG - chr1_3:8928879-8928898 Msa0102230:CDS 30.0%
TGACCTACATGAAAAATGTA+AGG + chr1_3:8928885-8928904 None:intergenic 30.0%
! CAACATTTTACACAACTCTT+AGG - chr1_3:8929028-8929047 Msa0102230:CDS 30.0%
CTCTTAGGTTATCTGAATAT+AGG - chr1_3:8929043-8929062 Msa0102230:CDS 30.0%
!!! GACTTGTTTTTTTTTCTCCA+TGG - chr1_3:8929113-8929132 Msa0102230:CDS 30.0%
TTTCGATATTGGGAAAATTG+TGG - chr1_3:8929156-8929175 Msa0102230:CDS 30.0%
TGATGTGTCAATTGTTTCAA+GGG - chr1_3:8929249-8929268 Msa0102230:CDS 30.0%
TGTATATCAACTACTGATGA+TGG + chr1_3:8929334-8929353 None:intergenic 30.0%
! CTCTTTTTCTGCAGATATAT+GGG - chr1_3:8929358-8929377 Msa0102230:intron 30.0%
AGATATATGGGTACAATTGT+TGG - chr1_3:8929370-8929389 Msa0102230:intron 30.0%
ACTGATAGATCTTAATGACA+GGG + chr1_3:8929470-8929489 None:intergenic 30.0%
TACTGATAGATCTTAATGAC+AGG + chr1_3:8929471-8929490 None:intergenic 30.0%
TAAGATATACTCTGTTGAAC+TGG - chr1_3:8929526-8929545 Msa0102230:CDS 30.0%
ATTCAGCCTGTTTATTTACA+AGG + chr1_3:8929565-8929584 None:intergenic 30.0%
TTGTAAATAAACAGGCTGAA+TGG - chr1_3:8929564-8929583 Msa0102230:CDS 30.0%
TGTAAATAAACAGGCTGAAT+GGG - chr1_3:8929565-8929584 Msa0102230:CDS 30.0%
TCAAAGAAGGAAAGATGAAA+AGG + chr1_3:8929655-8929674 None:intergenic 30.0%
TTTAGACTTGAAGTCAAAGA+AGG + chr1_3:8929668-8929687 None:intergenic 30.0%
! CTTTGACTTCAAGTCTAAAA+CGG - chr1_3:8929669-8929688 Msa0102230:intron 30.0%
AAGAAACTTACCCAAATATC+CGG + chr1_3:8929705-8929724 None:intergenic 30.0%
!! ACAAGACATTTTGATAAGGT+GGG + chr1_3:8929739-8929758 None:intergenic 30.0%
!! TACAAGACATTTTGATAAGG+TGG + chr1_3:8929740-8929759 None:intergenic 30.0%
! ACATCTTCATCATGTTTTCT+TGG + chr1_3:8928728-8928747 None:intergenic 30.0%
TTGTTGCATGATAGGTAAAA+AGG + chr1_3:8929954-8929973 None:intergenic 30.0%
! CAACAATGAATGCATGTTTT+AGG + chr1_3:8930080-8930099 None:intergenic 30.0%
!!! CGAGTAATGAATTTTGACTT+TGG + chr1_3:8930273-8930292 None:intergenic 30.0%
CATTGACACAAATTTCACTT+TGG + chr1_3:8930552-8930571 None:intergenic 30.0%
! AAATGGTGTTTGAAGTAGAA+GGG + chr1_3:8930612-8930631 None:intergenic 30.0%
! AAAATGGTGTTTGAAGTAGA+AGG + chr1_3:8930613-8930632 None:intergenic 30.0%
! TTTTGCTCAATGAAGGATAA+AGG - chr1_3:8930640-8930659 Msa0102230:CDS 30.0%
TTCTTGGTAAAGATTCTGGT+AGG + chr1_3:8928712-8928731 None:intergenic 35.0%
TGTAAGGATCTAACTCAATC+AGG + chr1_3:8928869-8928888 None:intergenic 35.0%
GTTTGTTTGTCGGATCAAAA+AGG - chr1_3:8928937-8928956 Msa0102230:CDS 35.0%
! GCGATTCTGTTCTTTTTATC+AGG - chr1_3:8928970-8928989 Msa0102230:CDS 35.0%
ATTACATTGCAATGTCACCA+TGG + chr1_3:8929133-8929152 None:intergenic 35.0%
ATGGTGACATTGCAATGTAA+TGG - chr1_3:8929132-8929151 Msa0102230:CDS 35.0%
GTGATGTGTCAATTGTTTCA+AGG - chr1_3:8929248-8929267 Msa0102230:CDS 35.0%
CCATATATCTGCAGAAAAAG+AGG + chr1_3:8929360-8929379 None:intergenic 35.0%
! CCTCTTTTTCTGCAGATATA+TGG - chr1_3:8929357-8929376 Msa0102230:intron 35.0%
TTCTAAGTGGCGAAATATTC+AGG - chr1_3:8929426-8929445 Msa0102230:intron 35.0%
GTGTGGTGATAAGCAAAATA+GGG - chr1_3:8929598-8929617 Msa0102230:intron 35.0%
! AGCAAAATAGGGTTAGTGTT+TGG - chr1_3:8929609-8929628 Msa0102230:intron 35.0%
! GCAAAATAGGGTTAGTGTTT+GGG - chr1_3:8929610-8929629 Msa0102230:intron 35.0%
TTTGTGATGCAGAAAATGAG+TGG - chr1_3:8929787-8929806 Msa0102230:CDS 35.0%
TTGTGATGCAGAAAATGAGT+GGG - chr1_3:8929788-8929807 Msa0102230:CDS 35.0%
! ATTAAAGTACCCGAAAATGG+AGG - chr1_3:8929834-8929853 Msa0102230:intron 35.0%
GCATAATCTTGTTGCATGAT+AGG + chr1_3:8929962-8929981 None:intergenic 35.0%
ATTGTTGAAAAGTGACCAAC+CGG - chr1_3:8930093-8930112 Msa0102230:CDS 35.0%
!! GAATTATCAGTTTTGGCCAA+AGG + chr1_3:8930130-8930149 None:intergenic 35.0%
TGTTGCAGCTTTCAAAAGAA+GGG + chr1_3:8930195-8930214 None:intergenic 35.0%
TTGTTGCAGCTTTCAAAAGA+AGG + chr1_3:8930196-8930215 None:intergenic 35.0%
! GACATTGATGATTCTAACTG+AGG + chr1_3:8930325-8930344 None:intergenic 35.0%
TTACAATAGAAGAATCGGGT+TGG + chr1_3:8930372-8930391 None:intergenic 35.0%
CCGTTTACAATAGAAGAATC+GGG + chr1_3:8930376-8930395 None:intergenic 35.0%
CCCGATTCTTCTATTGTAAA+CGG - chr1_3:8930373-8930392 Msa0102230:intron 35.0%
GCCGTTTACAATAGAAGAAT+CGG + chr1_3:8930377-8930396 None:intergenic 35.0%
! TGATAGTGTGAGTACTACTA+TGG - chr1_3:8930582-8930601 Msa0102230:intron 35.0%
TTCTTGGTAAAGATTCTGGT+AGG + chr1_3:8928712-8928731 None:intergenic 35.0%
TGTAAGGATCTAACTCAATC+AGG + chr1_3:8928869-8928888 None:intergenic 35.0%
GTTTGTTTGTCGGATCAAAA+AGG - chr1_3:8928937-8928956 Msa0102230:CDS 35.0%
! GCGATTCTGTTCTTTTTATC+AGG - chr1_3:8928970-8928989 Msa0102230:CDS 35.0%
ATTACATTGCAATGTCACCA+TGG + chr1_3:8929133-8929152 None:intergenic 35.0%
ATGGTGACATTGCAATGTAA+TGG - chr1_3:8929132-8929151 Msa0102230:CDS 35.0%
GTGATGTGTCAATTGTTTCA+AGG - chr1_3:8929248-8929267 Msa0102230:CDS 35.0%
CCATATATCTGCAGAAAAAG+AGG + chr1_3:8929360-8929379 None:intergenic 35.0%
! CCTCTTTTTCTGCAGATATA+TGG - chr1_3:8929357-8929376 Msa0102230:intron 35.0%
TTCTAAGTGGCGAAATATTC+AGG - chr1_3:8929426-8929445 Msa0102230:intron 35.0%
GTGTGGTGATAAGCAAAATA+GGG - chr1_3:8929598-8929617 Msa0102230:intron 35.0%
! AGCAAAATAGGGTTAGTGTT+TGG - chr1_3:8929609-8929628 Msa0102230:intron 35.0%
! GCAAAATAGGGTTAGTGTTT+GGG - chr1_3:8929610-8929629 Msa0102230:intron 35.0%
TTTGTGATGCAGAAAATGAG+TGG - chr1_3:8929787-8929806 Msa0102230:CDS 35.0%
TTGTGATGCAGAAAATGAGT+GGG - chr1_3:8929788-8929807 Msa0102230:CDS 35.0%
! ATTAAAGTACCCGAAAATGG+AGG - chr1_3:8929834-8929853 Msa0102230:intron 35.0%
GCATAATCTTGTTGCATGAT+AGG + chr1_3:8929962-8929981 None:intergenic 35.0%
ATTGTTGAAAAGTGACCAAC+CGG - chr1_3:8930093-8930112 Msa0102230:CDS 35.0%
!! GAATTATCAGTTTTGGCCAA+AGG + chr1_3:8930130-8930149 None:intergenic 35.0%
TGTTGCAGCTTTCAAAAGAA+GGG + chr1_3:8930195-8930214 None:intergenic 35.0%
TTGTTGCAGCTTTCAAAAGA+AGG + chr1_3:8930196-8930215 None:intergenic 35.0%
! GACATTGATGATTCTAACTG+AGG + chr1_3:8930325-8930344 None:intergenic 35.0%
TTACAATAGAAGAATCGGGT+TGG + chr1_3:8930372-8930391 None:intergenic 35.0%
CCGTTTACAATAGAAGAATC+GGG + chr1_3:8930376-8930395 None:intergenic 35.0%
CCCGATTCTTCTATTGTAAA+CGG - chr1_3:8930373-8930392 Msa0102230:intron 35.0%
GCCGTTTACAATAGAAGAAT+CGG + chr1_3:8930377-8930396 None:intergenic 35.0%
! TGATAGTGTGAGTACTACTA+TGG - chr1_3:8930582-8930601 Msa0102230:intron 35.0%
TGGTAAAGATTCTGGTAGGA+AGG + chr1_3:8928708-8928727 None:intergenic 40.0%
GGATCAAAAAGGCTTAAAGC+AGG - chr1_3:8928948-8928967 Msa0102230:CDS 40.0%
TTAGTGATGTCGATCCCTTA+AGG - chr1_3:8929395-8929414 Msa0102230:intron 40.0%
ATATTTCGCCACTTAGAACC+AGG + chr1_3:8929424-8929443 None:intergenic 40.0%
GGTGTGGTGATAAGCAAAAT+AGG - chr1_3:8929597-8929616 Msa0102230:intron 40.0%
! AAATAGGGTTAGTGTTTGGG+AGG - chr1_3:8929613-8929632 Msa0102230:intron 40.0%
GGAAAGATGAAAAGGCTTTC+CGG + chr1_3:8929647-8929666 None:intergenic 40.0%
CCCAAATATCCGGATTGTAA+CGG + chr1_3:8929695-8929714 None:intergenic 40.0%
CCGTTACAATCCGGATATTT+GGG - chr1_3:8929692-8929711 Msa0102230:intron 40.0%
TGTGATGCAGAAAATGAGTG+GGG - chr1_3:8929789-8929808 Msa0102230:CDS 40.0%
! AGCCATTGTTCCTCCATTTT+CGG + chr1_3:8929847-8929866 None:intergenic 40.0%
GTATGCTTTCTGTGCTTGAA+AGG + chr1_3:8930048-8930067 None:intergenic 40.0%
CATATGATCAGGTAACACCT+CGG + chr1_3:8930164-8930183 None:intergenic 40.0%
GGGATGTCAAACATATGATC+AGG + chr1_3:8930175-8930194 None:intergenic 40.0%
ACATCCTCAACTGATTGACA+TGG - chr1_3:8930345-8930364 Msa0102230:intron 40.0%
ATAGAGGGATTCACTACTTG+AGG + chr1_3:8930451-8930470 None:intergenic 40.0%
! TGGTTCATTGAGGGTATAGA+GGG + chr1_3:8930466-8930485 None:intergenic 40.0%
! TTGGTTCATTGAGGGTATAG+AGG + chr1_3:8930467-8930486 None:intergenic 40.0%
CACACTTCTTGGTTCATTGA+GGG + chr1_3:8930475-8930494 None:intergenic 40.0%
! CTCAATGAACCAAGAAGTGT+GGG - chr1_3:8930474-8930493 Msa0102230:CDS 40.0%
CATATTGATCCCACACTTCT+TGG + chr1_3:8930486-8930505 None:intergenic 40.0%
TGAGCAAAAGTCGTCGAAAA+TGG + chr1_3:8930629-8930648 None:intergenic 40.0%
TGAAGGATAAAGGTTCCAGA+TGG - chr1_3:8930650-8930669 Msa0102230:CDS 40.0%
TGGTAAAGATTCTGGTAGGA+AGG + chr1_3:8928708-8928727 None:intergenic 40.0%
GGATCAAAAAGGCTTAAAGC+AGG - chr1_3:8928948-8928967 Msa0102230:CDS 40.0%
TTAGTGATGTCGATCCCTTA+AGG - chr1_3:8929395-8929414 Msa0102230:intron 40.0%
ATATTTCGCCACTTAGAACC+AGG + chr1_3:8929424-8929443 None:intergenic 40.0%
GGTGTGGTGATAAGCAAAAT+AGG - chr1_3:8929597-8929616 Msa0102230:intron 40.0%
! AAATAGGGTTAGTGTTTGGG+AGG - chr1_3:8929613-8929632 Msa0102230:intron 40.0%
GGAAAGATGAAAAGGCTTTC+CGG + chr1_3:8929647-8929666 None:intergenic 40.0%
CCCAAATATCCGGATTGTAA+CGG + chr1_3:8929695-8929714 None:intergenic 40.0%
CCGTTACAATCCGGATATTT+GGG - chr1_3:8929692-8929711 Msa0102230:intron 40.0%
TGTGATGCAGAAAATGAGTG+GGG - chr1_3:8929789-8929808 Msa0102230:CDS 40.0%
! AGCCATTGTTCCTCCATTTT+CGG + chr1_3:8929847-8929866 None:intergenic 40.0%
GTATGCTTTCTGTGCTTGAA+AGG + chr1_3:8930048-8930067 None:intergenic 40.0%
CATATGATCAGGTAACACCT+CGG + chr1_3:8930164-8930183 None:intergenic 40.0%
GGGATGTCAAACATATGATC+AGG + chr1_3:8930175-8930194 None:intergenic 40.0%
ACATCCTCAACTGATTGACA+TGG - chr1_3:8930345-8930364 Msa0102230:intron 40.0%
ATAGAGGGATTCACTACTTG+AGG + chr1_3:8930451-8930470 None:intergenic 40.0%
! TGGTTCATTGAGGGTATAGA+GGG + chr1_3:8930466-8930485 None:intergenic 40.0%
! TTGGTTCATTGAGGGTATAG+AGG + chr1_3:8930467-8930486 None:intergenic 40.0%
CACACTTCTTGGTTCATTGA+GGG + chr1_3:8930475-8930494 None:intergenic 40.0%
! CTCAATGAACCAAGAAGTGT+GGG - chr1_3:8930474-8930493 Msa0102230:CDS 40.0%
CATATTGATCCCACACTTCT+TGG + chr1_3:8930486-8930505 None:intergenic 40.0%
TGAGCAAAAGTCGTCGAAAA+TGG + chr1_3:8930629-8930648 None:intergenic 40.0%
TGAAGGATAAAGGTTCCAGA+TGG - chr1_3:8930650-8930669 Msa0102230:CDS 40.0%
! CGATTGTTGTTCACAACCTG+TGG + chr1_3:8928759-8928778 None:intergenic 45.0%
GAAGAGACACCTTCTCACAA+CGG - chr1_3:8928908-8928927 Msa0102230:CDS 45.0%
AAGAGACACCTTCTCACAAC+GGG - chr1_3:8928909-8928928 Msa0102230:CDS 45.0%
!! ACGGGTTGGAGTTTGTTTGT+CGG - chr1_3:8928927-8928946 Msa0102230:CDS 45.0%
TTAGAACCAGGCCACCTTAA+GGG + chr1_3:8929412-8929431 None:intergenic 45.0%
! TTTTGCTTATCACCACACCC+TGG + chr1_3:8929596-8929615 None:intergenic 45.0%
AAGATGAAAAGGCTTTCCGG+AGG + chr1_3:8929644-8929663 None:intergenic 45.0%
CTAAAACGGCCGTTACAATC+CGG - chr1_3:8929683-8929702 Msa0102230:intron 45.0%
GCCGTTACAATCCGGATATT+TGG - chr1_3:8929691-8929710 Msa0102230:intron 45.0%
ACCCGAAAATGGAGGAACAA+TGG - chr1_3:8929842-8929861 Msa0102230:intron 45.0%
! GCCATTGTTCCTCCATTTTC+GGG + chr1_3:8929846-8929865 None:intergenic 45.0%
! CCATTGCTGTTGATCACCTA+TGG + chr1_3:8929929-8929948 None:intergenic 45.0%
CCATAGGTGATCAACAGCAA+TGG - chr1_3:8929926-8929945 Msa0102230:intron 45.0%
GTGGGCTTCATATCTTGCAA+GGG + chr1_3:8929998-8930017 None:intergenic 45.0%
TGTGGGCTTCATATCTTGCA+AGG + chr1_3:8929999-8930018 None:intergenic 45.0%
GGATTCTCTATTGCCTGTGT+GGG + chr1_3:8930016-8930035 None:intergenic 45.0%
GTGCTTGAAAGGTGAACTGT+CGG + chr1_3:8930037-8930056 None:intergenic 45.0%
TACTCGCTCATACTAGTCCA+TGG - chr1_3:8930287-8930306 Msa0102230:intron 45.0%
TGGACCATGTCAATCAGTTG+AGG + chr1_3:8930352-8930371 None:intergenic 45.0%
CCACACTTCTTGGTTCATTG+AGG + chr1_3:8930476-8930495 None:intergenic 45.0%
CCTCAATGAACCAAGAAGTG+TGG - chr1_3:8930473-8930492 Msa0102230:CDS 45.0%
! CGACGACTTTTGCTCAATGA+AGG - chr1_3:8930633-8930652 Msa0102230:CDS 45.0%
GAGAGTGATGTTCTGCTTGT+TGG - chr1_3:8930694-8930713 Msa0102230:CDS 45.0%
! CGATTGTTGTTCACAACCTG+TGG + chr1_3:8928759-8928778 None:intergenic 45.0%
GAAGAGACACCTTCTCACAA+CGG - chr1_3:8928908-8928927 Msa0102230:CDS 45.0%
AAGAGACACCTTCTCACAAC+GGG - chr1_3:8928909-8928928 Msa0102230:CDS 45.0%
!! ACGGGTTGGAGTTTGTTTGT+CGG - chr1_3:8928927-8928946 Msa0102230:CDS 45.0%
TTAGAACCAGGCCACCTTAA+GGG + chr1_3:8929412-8929431 None:intergenic 45.0%
! TTTTGCTTATCACCACACCC+TGG + chr1_3:8929596-8929615 None:intergenic 45.0%
AAGATGAAAAGGCTTTCCGG+AGG + chr1_3:8929644-8929663 None:intergenic 45.0%
CTAAAACGGCCGTTACAATC+CGG - chr1_3:8929683-8929702 Msa0102230:intron 45.0%
GCCGTTACAATCCGGATATT+TGG - chr1_3:8929691-8929710 Msa0102230:intron 45.0%
ACCCGAAAATGGAGGAACAA+TGG - chr1_3:8929842-8929861 Msa0102230:intron 45.0%
! GCCATTGTTCCTCCATTTTC+GGG + chr1_3:8929846-8929865 None:intergenic 45.0%
! CCATTGCTGTTGATCACCTA+TGG + chr1_3:8929929-8929948 None:intergenic 45.0%
CCATAGGTGATCAACAGCAA+TGG - chr1_3:8929926-8929945 Msa0102230:intron 45.0%
GTGGGCTTCATATCTTGCAA+GGG + chr1_3:8929998-8930017 None:intergenic 45.0%
TGTGGGCTTCATATCTTGCA+AGG + chr1_3:8929999-8930018 None:intergenic 45.0%
GGATTCTCTATTGCCTGTGT+GGG + chr1_3:8930016-8930035 None:intergenic 45.0%
GTGCTTGAAAGGTGAACTGT+CGG + chr1_3:8930037-8930056 None:intergenic 45.0%
TACTCGCTCATACTAGTCCA+TGG - chr1_3:8930287-8930306 Msa0102230:intron 45.0%
TGGACCATGTCAATCAGTTG+AGG + chr1_3:8930352-8930371 None:intergenic 45.0%
CCACACTTCTTGGTTCATTG+AGG + chr1_3:8930476-8930495 None:intergenic 45.0%
CCTCAATGAACCAAGAAGTG+TGG - chr1_3:8930473-8930492 Msa0102230:CDS 45.0%
! CGACGACTTTTGCTCAATGA+AGG - chr1_3:8930633-8930652 Msa0102230:CDS 45.0%
GAGAGTGATGTTCTGCTTGT+TGG - chr1_3:8930694-8930713 Msa0102230:CDS 45.0%
AACTCCAACCCGTTGTGAGA+AGG + chr1_3:8928920-8928939 None:intergenic 50.0%
GAGAAGTCGCAATTGCGAGT+TGG - chr1_3:8929274-8929293 Msa0102230:CDS 50.0%
!! CGCAATTGCGAGTTGGTGTA+AGG - chr1_3:8929281-8929300 Msa0102230:CDS 50.0%
GTGATGTCGATCCCTTAAGG+TGG - chr1_3:8929398-8929417 Msa0102230:intron 50.0%
CTTAGAACCAGGCCACCTTA+AGG + chr1_3:8929413-8929432 None:intergenic 50.0%
!! TAAGGTGGCCTGGTTCTAAG+TGG - chr1_3:8929413-8929432 Msa0102230:intron 50.0%
GCAAGATATGAAGCCCACAC+AGG - chr1_3:8930000-8930019 Msa0102230:CDS 50.0%
CGGATTCTCTATTGCCTGTG+TGG + chr1_3:8930017-8930036 None:intergenic 50.0%
! AAGGCTGCAACTTTTCCGGT+TGG + chr1_3:8930111-8930130 None:intergenic 50.0%
ACCGGAAAAGTTGCAGCCTT+TGG - chr1_3:8930111-8930130 Msa0102230:CDS 50.0%
! GCCAAAGGCTGCAACTTTTC+CGG + chr1_3:8930115-8930134 None:intergenic 50.0%
TGAGGTTGCTGCATACTCCA+TGG + chr1_3:8930307-8930326 None:intergenic 50.0%
! CATTCGTCAACGTCTAGCTC+AGG + chr1_3:8930406-8930425 None:intergenic 50.0%
CTGAGCTAGACGTTGACGAA+TGG - chr1_3:8930404-8930423 Msa0102230:intron 50.0%
! TGCTTGTTGGAGATGATCCC+TGG - chr1_3:8930707-8930726 Msa0102230:CDS 50.0%
! GCTTGTTGGAGATGATCCCT+GGG - chr1_3:8930708-8930727 Msa0102230:CDS 50.0%
AACTCCAACCCGTTGTGAGA+AGG + chr1_3:8928920-8928939 None:intergenic 50.0%
GAGAAGTCGCAATTGCGAGT+TGG - chr1_3:8929274-8929293 Msa0102230:CDS 50.0%
!! CGCAATTGCGAGTTGGTGTA+AGG - chr1_3:8929281-8929300 Msa0102230:CDS 50.0%
GTGATGTCGATCCCTTAAGG+TGG - chr1_3:8929398-8929417 Msa0102230:intron 50.0%
CTTAGAACCAGGCCACCTTA+AGG + chr1_3:8929413-8929432 None:intergenic 50.0%
!! TAAGGTGGCCTGGTTCTAAG+TGG - chr1_3:8929413-8929432 Msa0102230:intron 50.0%
GCAAGATATGAAGCCCACAC+AGG - chr1_3:8930000-8930019 Msa0102230:CDS 50.0%
CGGATTCTCTATTGCCTGTG+TGG + chr1_3:8930017-8930036 None:intergenic 50.0%
! AAGGCTGCAACTTTTCCGGT+TGG + chr1_3:8930111-8930130 None:intergenic 50.0%
ACCGGAAAAGTTGCAGCCTT+TGG - chr1_3:8930111-8930130 Msa0102230:CDS 50.0%
! GCCAAAGGCTGCAACTTTTC+CGG + chr1_3:8930115-8930134 None:intergenic 50.0%
TGAGGTTGCTGCATACTCCA+TGG + chr1_3:8930307-8930326 None:intergenic 50.0%
! CATTCGTCAACGTCTAGCTC+AGG + chr1_3:8930406-8930425 None:intergenic 50.0%
CTGAGCTAGACGTTGACGAA+TGG - chr1_3:8930404-8930423 Msa0102230:intron 50.0%
! TGCTTGTTGGAGATGATCCC+TGG - chr1_3:8930707-8930726 Msa0102230:CDS 50.0%
! GCTTGTTGGAGATGATCCCT+GGG - chr1_3:8930708-8930727 Msa0102230:CDS 50.0%
GACACCTTCTCACAACGGGT+TGG - chr1_3:8928913-8928932 Msa0102230:CDS 55.0%
AGGCTGAATGGGATGAGCCA+GGG - chr1_3:8929576-8929595 Msa0102230:CDS 55.0%
GACACCTTCTCACAACGGGT+TGG - chr1_3:8928913-8928932 Msa0102230:CDS 55.0%
AGGCTGAATGGGATGAGCCA+GGG - chr1_3:8929576-8929595 Msa0102230:CDS 55.0%
GTCGATCCCTTAAGGTGGCC+TGG - chr1_3:8929403-8929422 Msa0102230:intron 60.0%
CAGGCTGAATGGGATGAGCC+AGG - chr1_3:8929575-8929594 Msa0102230:CDS 60.0%
GAATGGGATGAGCCAGGGTG+TGG - chr1_3:8929581-8929600 Msa0102230:CDS 60.0%
TGTTTGGGAGGTCGAGCCTC+CGG - chr1_3:8929625-8929644 Msa0102230:intron 60.0%
GTCGATCCCTTAAGGTGGCC+TGG - chr1_3:8929403-8929422 Msa0102230:intron 60.0%
CAGGCTGAATGGGATGAGCC+AGG - chr1_3:8929575-8929594 Msa0102230:CDS 60.0%
GAATGGGATGAGCCAGGGTG+TGG - chr1_3:8929581-8929600 Msa0102230:CDS 60.0%
TGTTTGGGAGGTCGAGCCTC+CGG - chr1_3:8929625-8929644 Msa0102230:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 8928678 8930735 8928678 ID=Msa0102230;Name=Msa0102230
chr1_3 mRNA 8928678 8930735 8928678 ID=Msa0102230-mRNA-1;Parent=Msa0102230;Name=Msa0102230-mRNA-1;_AED=0.44;_eAED=0.47;_QI=0|0|0|1|0.8|0.83|6|0|437
chr1_3 exon 8930591 8930735 8930591 ID=Msa0102230-mRNA-1:exon:3564;Parent=Msa0102230-mRNA-1
chr1_3 exon 8930422 8930512 8930422 ID=Msa0102230-mRNA-1:exon:3563;Parent=Msa0102230-mRNA-1
chr1_3 exon 8929966 8930143 8929966 ID=Msa0102230-mRNA-1:exon:3562;Parent=Msa0102230-mRNA-1
chr1_3 exon 8929700 8929835 8929700 ID=Msa0102230-mRNA-1:exon:3561;Parent=Msa0102230-mRNA-1
chr1_3 exon 8929482 8929614 8929482 ID=Msa0102230-mRNA-1:exon:3560;Parent=Msa0102230-mRNA-1
chr1_3 exon 8928678 8929308 8928678 ID=Msa0102230-mRNA-1:exon:3559;Parent=Msa0102230-mRNA-1
chr1_3 CDS 8930591 8930735 8930591 ID=Msa0102230-mRNA-1:cds;Parent=Msa0102230-mRNA-1
chr1_3 CDS 8930422 8930512 8930422 ID=Msa0102230-mRNA-1:cds;Parent=Msa0102230-mRNA-1
chr1_3 CDS 8929966 8930143 8929966 ID=Msa0102230-mRNA-1:cds;Parent=Msa0102230-mRNA-1
chr1_3 CDS 8929700 8929835 8929700 ID=Msa0102230-mRNA-1:cds;Parent=Msa0102230-mRNA-1
chr1_3 CDS 8929482 8929614 8929482 ID=Msa0102230-mRNA-1:cds;Parent=Msa0102230-mRNA-1
chr1_3 CDS 8928678 8929308 8928678 ID=Msa0102230-mRNA-1:cds;Parent=Msa0102230-mRNA-1
Gene Sequence

>Msa0102230

ATGGGATGGCAAAATATTTGTTCACAACCTTCCTACCAGAATCTTTACCAAGAAAACATGATGAAGATGTTTTATAAACCACAGGTTGTGAACAACAATCGAGCCTTTTTACCTGTTTCAATGCTATTATTGTTTGAGTTTAAATGTCATCTGAAGAGACACCTTCTCACAACGGGTTGGAGTTTGTTTGTCGGATCAAAAAGGCTTAAAGCAGGCGATTCTGTTCTTTTTATCAGGGACGAGAAGTCGCAATTGCGAGTTGGTGTAAGGCGTGCTAATCGTCAACAGACAACACTGCCATCATCAGTAGTTGATATACATTTCCTCTTTTTCTGCAGATATATGGGTACAATTGTTGGTATTAGTGATGTCGATCCCTTAAGGTGGCCTGGTTCTAAGTGGCGAAATATTCAGGCTGAATGGGATGAGCCAGGGTGTGGTGATAAGCAAAATAGGGTTAGTGTTTGGGAGGTCGAGCCTCCGGAAAGCCTTTTCATCTTTCCTTCTTTGACTTCAAGTCTAAAACGGCCGTTACAATCCGGATATTTGGAAAATGAGTGGGGAACTTTGATACGAAGACCCTTTATTAAAGTACCCGAAAATGGAGGAACAATGGCTCTCTCAAACTCAATGCCAAATCTTTACCAAGAAAACATGATGAAGATGTTTTCTATAAACCATAGTGACCAACCGGAAAAGTTGCAGCCTTTGGCCAAAACTGATAATTCAAAATTAGAATCCGAGGTGTTACCTGATCATATGTTTGACATCCCTTCTTTTGAAAGCTGCAACAACATTGAAAAAGTGAATACGGCAAACCAATTAACATATCACAATCAAAACCAAAACCAAAGTCAAAATTCATTACTCGCTCATACTAGTCCATGGAGTATGCAGCAACCTCAGTTAGAATCATCAATGTCACATCCTCAACTGATTGACATGGTCCAACCCGATTCTTCTATTGTAAACGGCATGCTTCCTGAGCTAGACGTTGACGAATGGATGATGTATTCTTCTTGTCAGCCTCAAGTAGTGAATCCCTCTATACCCTCAATGAACCAAGAAGTGTGGGATCAATATGTCAAGAATTTTAACTTGAGAGATCTTTCAGCTGAAAGCAATAACCAAAGTGAAATTTGTGTCAATGTTGATGCTAGTGATAGTGTGAGTACTACTATGGTTGACCCTTCTACTTCAAACACCATTTTCGACGACTTTTGCTCAATGAAGGATAAAGGTTCCAGATGGAAATTAGTATATGTAGATTACGAGAGTGATGTTCTGCTTGTTGGAGATGATCCCTGGGAGTAA
Protein sequence

>Msa0102230

MGWQNICSQPSYQNLYQENMMKMFYKPQVVNNNRAFLPVSMLLLFEFKCHLKRHLLTTGWSLFVGSKRLKAGDSVLFIRDEKSQLRVGVRRANRQQTTLPSSVVDIHFLFFCRYMGTIVGISDVDPLRWPGSKWRNIQAEWDEPGCGDKQNRVSVWEVEPPESLFIFPSLTSSLKRPLQSGYLENEWGTLIRRPFIKVPENGGTMALSNSMPNLYQENMMKMFSINHSDQPEKLQPLAKTDNSKLESEVLPDHMFDIPSFESCNNIEKVNTANQLTYHNQNQNQSQNSLLAHTSPWSMQQPQLESSMSHPQLIDMVQPDSSIVNGMLPELDVDEWMMYSSCQPQVVNPSIPSMNQEVWDQYVKNFNLRDLSAESNNQSEICVNVDASDSVSTTMVDPSTSNTIFDDFCSMKDKGSRWKLVYVDYESDVLLVGDDPWE*