Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0102350 | G7I760 | 93.947 | 413 | 13 | 3 | 1 | 411 | 1 | 403 | 0.0 | 751 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0102350 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0102350 | MtrunA17_Chr1g0156521 | 93.947 | 413 | 13 | 3 | 1 | 411 | 1 | 403 | 0.0 | 751 |
| Msa0102350 | MtrunA17_Chr3g0114991 | 59.854 | 274 | 87 | 8 | 152 | 408 | 183 | 450 | 5.18e-107 | 323 |
| Msa0102350 | MtrunA17_Chr4g0042091 | 51.250 | 240 | 104 | 3 | 179 | 408 | 200 | 436 | 1.96e-70 | 228 |
| Msa0102350 | MtrunA17_Chr3g0104431 | 43.396 | 265 | 123 | 10 | 164 | 409 | 133 | 389 | 5.44e-58 | 194 |
| Msa0102350 | MtrunA17_Chr2g0280501 | 34.646 | 381 | 220 | 10 | 45 | 408 | 8 | 376 | 1.83e-55 | 187 |
| Msa0102350 | MtrunA17_Chr5g0399041 | 40.097 | 207 | 100 | 7 | 206 | 409 | 105 | 290 | 2.18e-37 | 137 |
| Msa0102350 | MtrunA17_Chr4g0056461 | 40.609 | 197 | 86 | 6 | 217 | 409 | 106 | 275 | 4.80e-37 | 135 |
| Msa0102350 | MtrunA17_Chr8g0376191 | 39.181 | 171 | 89 | 4 | 248 | 409 | 2 | 166 | 1.33e-31 | 118 |
| Msa0102350 | MtrunA17_Chr2g0280521 | 48.113 | 106 | 55 | 0 | 213 | 318 | 10 | 115 | 5.44e-25 | 99.0 |
| Msa0102350 | MtrunA17_Chr5g0445321 | 32.124 | 193 | 114 | 7 | 222 | 407 | 1 | 183 | 1.80e-24 | 99.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0102350 | AT1G75710.1 | 59.483 | 464 | 130 | 13 | 1 | 410 | 1 | 460 | 1.75e-168 | 480 |
| Msa0102350 | AT4G27240.1 | 38.568 | 433 | 194 | 13 | 27 | 408 | 19 | 430 | 1.99e-73 | 236 |
| Msa0102350 | AT5G54630.1 | 49.796 | 245 | 97 | 5 | 184 | 408 | 233 | 471 | 4.47e-69 | 226 |
| Msa0102350 | AT4G27240.2 | 37.592 | 407 | 182 | 13 | 27 | 382 | 19 | 404 | 4.59e-61 | 204 |
| Msa0102350 | AT2G29660.1 | 42.169 | 249 | 118 | 7 | 184 | 409 | 128 | 373 | 1.74e-52 | 180 |
| Msa0102350 | AT1G11490.2 | 32.474 | 388 | 213 | 12 | 42 | 408 | 5 | 364 | 5.84e-42 | 152 |
| Msa0102350 | AT1G11490.1 | 32.474 | 388 | 213 | 12 | 42 | 408 | 5 | 364 | 5.84e-42 | 152 |
| Msa0102350 | AT4G12450.1 | 35.160 | 219 | 100 | 5 | 201 | 409 | 91 | 277 | 7.02e-32 | 122 |
| Msa0102350 | AT4G22560.1 | 37.981 | 208 | 90 | 6 | 206 | 409 | 92 | 264 | 2.52e-30 | 118 |
| Msa0102350 | AT1G62520.1 | 36.585 | 205 | 104 | 7 | 207 | 409 | 100 | 280 | 6.55e-29 | 114 |
Find 120 sgRNAs with CRISPR-Local
Find 243 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTTCCAAGCTTTCAATCTT+AGG | 0.165279 | 1_3:+9110230 | None:intergenic |
| CATTCCCCTACATTATTTAT+AGG | 0.167661 | 1_3:+9107247 | None:intergenic |
| AATAATGGTTACTCAAAATT+AGG | 0.218019 | 1_3:-9111254 | Msa0102350:CDS |
| TCATAAAGAATTTGTAAGTT+TGG | 0.248001 | 1_3:+9107403 | None:intergenic |
| CTTTATGATTGTCTTGGATT+TGG | 0.260600 | 1_3:-9107388 | Msa0102350:three_prime_UTR |
| ACTCGCTCTGCATCATGTTC+TGG | 0.262275 | 1_3:-9111071 | Msa0102350:CDS |
| CTTCGATCTGTTTGCATGAT+AGG | 0.262632 | 1_3:+9111312 | None:intergenic |
| CAACGACATAATGTGCTTCT+AGG | 0.275334 | 1_3:+9110275 | None:intergenic |
| TCCGCCCTTTGCGCCGTGCC+TGG | 0.315948 | 1_3:-9107829 | Msa0102350:CDS |
| AGCTTCAGAGATGTTGTTCA+TGG | 0.341820 | 1_3:-9111209 | Msa0102350:CDS |
| TTCTTGGGGTGGGATTGTTC+AGG | 0.350003 | 1_3:+9111434 | None:intergenic |
| TTGGTGTGCCGCGTGATTGC+CGG | 0.354951 | 1_3:-9107688 | Msa0102350:CDS |
| GAGTAACCATTATTGTTGTT+TGG | 0.358892 | 1_3:+9111263 | None:intergenic |
| AGAGATTGAGGTTGAAGAAA+AGG | 0.362306 | 1_3:+9111538 | None:intergenic |
| CATAATGTGCTTCTAGGAAT+TGG | 0.382545 | 1_3:+9110281 | None:intergenic |
| TCAAAACCAAACAACAATAA+TGG | 0.382878 | 1_3:-9111269 | Msa0102350:CDS |
| CAAATTCTTTATGATTGTCT+TGG | 0.383094 | 1_3:-9107394 | Msa0102350:three_prime_UTR |
| GATTCTATTGCGGAGAATGC+TGG | 0.385728 | 1_3:-9107601 | Msa0102350:CDS |
| AAAATGTACTCTCTCTTTCA+TGG | 0.393696 | 1_3:+9111510 | None:intergenic |
| ATCACCAGAGAGTAGTATCT+TGG | 0.393830 | 1_3:-9111153 | Msa0102350:CDS |
| CGCCACGCGCTTCACTTTCC+CGG | 0.395766 | 1_3:+9107669 | None:intergenic |
| CAGTTGGAGAAGATTCTAGA+AGG | 0.406367 | 1_3:-9107717 | Msa0102350:CDS |
| CTCGCTCTGCATCATGTTCT+GGG | 0.411037 | 1_3:-9111070 | Msa0102350:CDS |
| ATTAGATCGCGTATCAAGAT+TGG | 0.411310 | 1_3:+9107299 | None:intergenic |
| GTTCCAAGCTTTCAATCTTA+GGG | 0.412870 | 1_3:+9110231 | None:intergenic |
| ATTGTTCAGGCAAGGAATTA+AGG | 0.414459 | 1_3:+9111447 | None:intergenic |
| CTTCCCTAAGATTGAAAGCT+TGG | 0.415664 | 1_3:-9110234 | Msa0102350:CDS |
| GAGCTGGGTCCAGAGGATTC+AGG | 0.426596 | 1_3:-9108102 | Msa0102350:CDS |
| ATGCAGTTTAGAAAGCTATC+TGG | 0.426983 | 1_3:-9110996 | Msa0102350:CDS |
| TTAGATCGCGTATCAAGATT+GGG | 0.428870 | 1_3:+9107300 | None:intergenic |
| AGGAATTAAGGAGAGCCATT+AGG | 0.432284 | 1_3:+9111459 | None:intergenic |
| TATCAACCATGCAAGGTATT+CGG | 0.434297 | 1_3:+9107487 | None:intergenic |
| GCGGAGTTTGCAACATAATC+CGG | 0.437889 | 1_3:-9107804 | Msa0102350:CDS |
| TTGTTGAACAGTTTCGGAGC+TGG | 0.439362 | 1_3:-9108118 | Msa0102350:intron |
| ATGTTTCTGCCTGAATCCTC+TGG | 0.441608 | 1_3:+9108093 | None:intergenic |
| TGTTGAACAGTTTCGGAGCT+GGG | 0.442643 | 1_3:-9108117 | Msa0102350:intron |
| CTCTGCATTCCTCGAACCGT+TGG | 0.442678 | 1_3:+9107974 | None:intergenic |
| CGCATCCAGGCACGGCGCAA+AGG | 0.455208 | 1_3:+9107824 | None:intergenic |
| ATTGAGGTTGAAGAAAAGGT+TGG | 0.458415 | 1_3:+9111542 | None:intergenic |
| CTTTGCGCCGTGCCTGGATG+CGG | 0.466713 | 1_3:-9107823 | Msa0102350:CDS |
| AGGCACGGCGCAAAGGGCGG+AGG | 0.470822 | 1_3:+9107831 | None:intergenic |
| TTCATGGGAGAGAGAGATTG+AGG | 0.471071 | 1_3:+9111526 | None:intergenic |
| AAACATTATGTTAACCTGCT+AGG | 0.471824 | 1_3:+9110945 | None:intergenic |
| GCATCCAGGCACGGCGCAAA+GGG | 0.472172 | 1_3:+9107825 | None:intergenic |
| GATCACCTATAAATAATGTA+GGG | 0.475415 | 1_3:-9107252 | Msa0102350:three_prime_UTR |
| TGATCACCTATAAATAATGT+AGG | 0.477586 | 1_3:-9107253 | Msa0102350:three_prime_UTR |
| TTTATTTGGTCCCATGAAGA+AGG | 0.480093 | 1_3:+9111341 | None:intergenic |
| AACATCTCTGAAGCTACAAA+TGG | 0.481428 | 1_3:+9111217 | None:intergenic |
| GGTGGTGTCAGAGGAGGAAA+TGG | 0.486566 | 1_3:-9107632 | Msa0102350:CDS |
| TCACCAGAGAGTAGTATCTT+GGG | 0.490800 | 1_3:-9111152 | Msa0102350:CDS |
| ACGAACAATCCAACGGTTCG+AGG | 0.494391 | 1_3:-9107983 | Msa0102350:CDS |
| CTTGGTGGTGTTGGATGCAC+GGG | 0.495904 | 1_3:+9107939 | None:intergenic |
| AACATTATGTTAACCTGCTA+GGG | 0.496126 | 1_3:+9110946 | None:intergenic |
| GAAAGTGAAGCGCGTGGCGG+AGG | 0.498808 | 1_3:-9107665 | Msa0102350:CDS |
| TCTTGGTGGTGTTGGATGCA+CGG | 0.499082 | 1_3:+9107938 | None:intergenic |
| ACATGATCGTTGACCCTAGC+AGG | 0.499380 | 1_3:-9110959 | Msa0102350:intron |
| ATTCTATTGCGGAGAATGCT+GGG | 0.506191 | 1_3:-9107600 | Msa0102350:CDS |
| TGGTGTGCCGCGTGATTGCC+GGG | 0.506413 | 1_3:-9107687 | Msa0102350:CDS |
| CATCAAGCTGTTCGACATGC+AGG | 0.509515 | 1_3:-9110206 | Msa0102350:intron |
| ATAGCGATGTGCTGTGGAAA+CGG | 0.513165 | 1_3:+9107878 | None:intergenic |
| GAAACACTAGAGTTGTTCAT+AGG | 0.519636 | 1_3:-9111187 | Msa0102350:CDS |
| AAACAAGGAAGAATAGCTCT+TGG | 0.523135 | 1_3:+9107541 | None:intergenic |
| TCCAGGCACGGCGCAAAGGG+CGG | 0.528114 | 1_3:+9107828 | None:intergenic |
| CTTCTCCAACTGAATTGTCA+TGG | 0.528807 | 1_3:+9107728 | None:intergenic |
| CGATCTGTTTGCATGATAGG+AGG | 0.534881 | 1_3:+9111315 | None:intergenic |
| GTGAAGCGCGTGGCGGAGGA+AGG | 0.538219 | 1_3:-9107661 | Msa0102350:CDS |
| AGGTGCACCGGTGGTGTCAG+AGG | 0.541723 | 1_3:-9107641 | Msa0102350:CDS |
| GGATTGTTCGTTGTGTGTTG+TGG | 0.544405 | 1_3:+9107995 | None:intergenic |
| TTCTCCAACTGAATTGTCAT+GGG | 0.545184 | 1_3:+9107729 | None:intergenic |
| ATGTTGCAAACTCCGCATCC+AGG | 0.553814 | 1_3:+9107811 | None:intergenic |
| GATGATGATGAAGCAGTGAC+AGG | 0.553941 | 1_3:+9111101 | None:intergenic |
| GGGAAATCATCCAACGGTGG+AGG | 0.554162 | 1_3:-9111050 | Msa0102350:CDS |
| AGATAATCTTCAAATCTAGC+TGG | 0.554427 | 1_3:-9108065 | Msa0102350:CDS |
| GGCCCTACCACTACTAGCAT+TGG | 0.555926 | 1_3:+9107750 | None:intergenic |
| AGATTCTAGAAGGGCAATGT+TGG | 0.558092 | 1_3:-9107707 | Msa0102350:CDS |
| AGGGCCCATGACAATTCAGT+TGG | 0.558945 | 1_3:-9107733 | Msa0102350:CDS |
| ACCTTGCATGGTTGATATCA+CGG | 0.559963 | 1_3:-9107481 | Msa0102350:three_prime_UTR |
| AATCCACGGTGTGCCGCGGA+CGG | 0.561977 | 1_3:-9107913 | Msa0102350:CDS |
| TGTGTAGTTTCCTCCACCGT+TGG | 0.563416 | 1_3:+9111040 | None:intergenic |
| GCAAACTCCGCATCCAGGCA+CGG | 0.564278 | 1_3:+9107816 | None:intergenic |
| AAATGTACTCTCTCTTTCAT+GGG | 0.564311 | 1_3:+9111511 | None:intergenic |
| TTGGATTGAGAATTAATGAG+AGG | 0.569672 | 1_3:-9107206 | Msa0102350:three_prime_UTR |
| TGACCCAAGATACTACTCTC+TGG | 0.570001 | 1_3:+9111149 | None:intergenic |
| GAGGAGTTCGTTGCCGTCCG+CGG | 0.571453 | 1_3:+9107900 | None:intergenic |
| GGCGGAGGAAGGTGCACCGG+TGG | 0.572043 | 1_3:-9107650 | Msa0102350:CDS |
| GACCAATGCTAGTAGTGGTA+GGG | 0.575088 | 1_3:-9107752 | Msa0102350:CDS |
| CTCCAATGTGCAAGATTGAA+CGG | 0.576390 | 1_3:-9108029 | Msa0102350:CDS |
| AGACCAATGCTAGTAGTGGT+AGG | 0.580999 | 1_3:-9107753 | Msa0102350:CDS |
| TGCAAGGTATTCGGTCAACA+TGG | 0.581335 | 1_3:+9107496 | None:intergenic |
| ATCCGTTCAATCTTGCACAT+TGG | 0.586137 | 1_3:+9108027 | None:intergenic |
| TTGCCGTCCGCGGCACACCG+TGG | 0.592005 | 1_3:+9107910 | None:intergenic |
| AGTTTCGGAGCTGGGTCCAG+AGG | 0.594982 | 1_3:-9108109 | Msa0102350:CDS |
| TCGTGTGCACTCGGTGCAAG+TGG | 0.597474 | 1_3:-9107856 | Msa0102350:CDS |
| TCACTTTCCCGGCAATCACG+CGG | 0.600425 | 1_3:+9107680 | None:intergenic |
| ATTTGGTCCCATGAAGAAGG+TGG | 0.601148 | 1_3:+9111344 | None:intergenic |
| CGTGGCGGAGGAAGGTGCAC+CGG | 0.604564 | 1_3:-9107653 | Msa0102350:CDS |
| ACATCGCTATCGTGTGCACT+CGG | 0.604788 | 1_3:-9107865 | Msa0102350:CDS |
| ATTTCCTCCTCTGACACCAC+CGG | 0.605158 | 1_3:+9107634 | None:intergenic |
| AGTTGGAGAAGATTCTAGAA+GGG | 0.607565 | 1_3:-9107716 | Msa0102350:CDS |
| GGGGTGGGATTGTTCAGGCA+AGG | 0.608094 | 1_3:+9111439 | None:intergenic |
| TGCACCGGTGGTGTCAGAGG+AGG | 0.610517 | 1_3:-9107638 | Msa0102350:CDS |
| ACATCATCATCATCTTCAAG+AGG | 0.620776 | 1_3:-9111020 | Msa0102350:CDS |
| TGTTGACCGAATACCTTGCA+TGG | 0.628164 | 1_3:-9107493 | Msa0102350:exon |
| ACCGTGATATCAACCATGCA+AGG | 0.628953 | 1_3:+9107480 | None:intergenic |
| ATCACCTATAAATAATGTAG+GGG | 0.629852 | 1_3:-9107251 | Msa0102350:three_prime_UTR |
| GTGAAGACCAATGCTAGTAG+TGG | 0.632554 | 1_3:-9107757 | Msa0102350:CDS |
| CTATCATGCAAACAGATCGA+AGG | 0.636988 | 1_3:-9111311 | Msa0102350:CDS |
| TTGTAAATAACTACGAAACA+AGG | 0.649310 | 1_3:+9107526 | None:intergenic |
| TAGATCGCGTATCAAGATTG+GGG | 0.659550 | 1_3:+9107301 | None:intergenic |
| CGGGAAAGTGAAGCGCGTGG+CGG | 0.664636 | 1_3:-9107668 | Msa0102350:CDS |
| TGTTCTGGGAAATCATCCAA+CGG | 0.668023 | 1_3:-9111056 | Msa0102350:CDS |
| TGCCGGGAAAGTGAAGCGCG+TGG | 0.670291 | 1_3:-9107671 | Msa0102350:CDS |
| CACACGATAGCGATGTGCTG+TGG | 0.671968 | 1_3:+9107872 | None:intergenic |
| GCGATGTGCTGTGGAAACGG+AGG | 0.680201 | 1_3:+9107881 | None:intergenic |
| GTTTGCAACATAATCCGGCA+CGG | 0.681455 | 1_3:-9107799 | Msa0102350:CDS |
| ACACACAACGAACAATCCAA+CGG | 0.693116 | 1_3:-9107990 | Msa0102350:CDS |
| TTATGTCGTTGTGATAAGTG+TGG | 0.706591 | 1_3:-9110263 | Msa0102350:CDS |
| GTTCGAGGAATGCAGAGACG+CGG | 0.728390 | 1_3:-9107968 | Msa0102350:CDS |
| TCGTTGTGATAAGTGTGGAG+AGG | 0.731697 | 1_3:-9110258 | Msa0102350:CDS |
| TCTGGGAAATCATCCAACGG+TGG | 0.734107 | 1_3:-9111053 | Msa0102350:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTTTTATTTTTTTTT+GGG | + | chr1_3:9109546-9109565 | None:intergenic | 0.0% |
| !!! | TTTTTATTTTTATTTTTTTT+TGG | + | chr1_3:9109547-9109566 | None:intergenic | 0.0% |
| !!! | TTATAAGTATTTTTGATATA+TGG | - | chr1_3:9107959-9107978 | Msa0102350:CDS | 10.0% |
| !! | GTACTAATAATAAATAATAA+TGG | + | chr1_3:9110217-9110236 | None:intergenic | 10.0% |
| !!! | GATTTTTATTTGTATTTTAT+TGG | - | chr1_3:9111553-9111572 | Msa0102350:five_prime_UTR | 10.0% |
| !!! | TTCATTTATTAATGTTTTTC+AGG | - | chr1_3:9107903-9107922 | Msa0102350:CDS | 15.0% |
| !! | TTACTCATAAAATAAGATAT+TGG | + | chr1_3:9108106-9108125 | None:intergenic | 15.0% |
| !! | AAAAAAAAAACCTAAAAAGT+TGG | - | chr1_3:9108301-9108320 | Msa0102350:intron | 15.0% |
| !!! | GCTAATTAATTAATTTTCAA+AGG | + | chr1_3:9108391-9108410 | None:intergenic | 15.0% |
| !! | GATTTATTAACTCTTATATA+TGG | - | chr1_3:9108750-9108769 | Msa0102350:intron | 15.0% |
| !! | AAATGCAACAATTTAAATAA+AGG | - | chr1_3:9110332-9110351 | Msa0102350:intron | 15.0% |
| !! | AACTTTATAATTATACTAGT+AGG | + | chr1_3:9110380-9110399 | None:intergenic | 15.0% |
| !!! | ATTTGTTGATTTTATTATCT+TGG | - | chr1_3:9110606-9110625 | Msa0102350:intron | 15.0% |
| !!! | CATTTTCAACAAATTTTTGA+AGG | + | chr1_3:9107206-9107225 | None:intergenic | 20.0% |
| !!! | CTTCAAAAATTTGTTGAAAA+TGG | - | chr1_3:9107204-9107223 | Msa0102350:three_prime_UTR | 20.0% |
| !! | AATAATGGTTACTCAAAATT+AGG | - | chr1_3:9107524-9107543 | Msa0102350:CDS | 20.0% |
| !!! | AAATACAATCAATTTTTGTG+TGG | - | chr1_3:9108037-9108056 | Msa0102350:CDS | 20.0% |
| !! | AATAACTCACTATAATTGAA+TGG | + | chr1_3:9108148-9108167 | None:intergenic | 20.0% |
| !! | CTAGTATTAAAAGTTATGAT+TGG | + | chr1_3:9108189-9108208 | None:intergenic | 20.0% |
| !! | TCACATATATTTCATTCTAA+AGG | - | chr1_3:9108347-9108366 | Msa0102350:intron | 20.0% |
| !!! | ATCTCATCATAATAATCTTT+TGG | - | chr1_3:9108979-9108998 | Msa0102350:intron | 20.0% |
| !!! | TCTCATCATAATAATCTTTT+GGG | - | chr1_3:9108980-9108999 | Msa0102350:intron | 20.0% |
| !!! | TTTTTTCATTATCTTGTTCT+TGG | - | chr1_3:9109186-9109205 | Msa0102350:intron | 20.0% |
| !! | ATTCATTAACCAATGTTAAT+TGG | + | chr1_3:9109264-9109283 | None:intergenic | 20.0% |
| !! | TCATAAAGAATTTGTAAGTT+TGG | + | chr1_3:9111378-9111397 | None:intergenic | 20.0% |
| !!! | TATTCTAGCTATTTTCCTAA+TGG | - | chr1_3:9107304-9107323 | Msa0102350:three_prime_UTR | 25.0% |
| !!! | TTTGGTTTTTGTTTCTGTTT+TGG | + | chr1_3:9107401-9107420 | None:intergenic | 25.0% |
| !!! | ATGATAGGAGGTTTTTTATT+TGG | + | chr1_3:9107454-9107473 | None:intergenic | 25.0% |
| !!! | TTATTGTTGTTTGGTTTTGA+AGG | + | chr1_3:9107509-9107528 | None:intergenic | 25.0% |
| ! | TCAAAACCAAACAACAATAA+TGG | - | chr1_3:9107509-9107528 | Msa0102350:exon | 25.0% |
| !! | AGCAATTGTTTGAAGATTTT+TGG | - | chr1_3:9108004-9108023 | Msa0102350:CDS | 25.0% |
| ! | TATGATTGGAAAATGTAGTT+GGG | + | chr1_3:9108175-9108194 | None:intergenic | 25.0% |
| ! | TTATGATTGGAAAATGTAGT+TGG | + | chr1_3:9108176-9108195 | None:intergenic | 25.0% |
| ! | AAGAATACTCGTAATAATGT+TGG | - | chr1_3:9108211-9108230 | Msa0102350:intron | 25.0% |
| !! | TGTTTTCGTCTTAAAGAAAA+AGG | + | chr1_3:9108682-9108701 | None:intergenic | 25.0% |
| ! | TATAGTAAATGTGATACGAA+TGG | + | chr1_3:9108720-9108739 | None:intergenic | 25.0% |
| ! | GAAATTGAGAGTTAATATGT+TGG | + | chr1_3:9108813-9108832 | None:intergenic | 25.0% |
| !!! | TGATTCAATTTTAGCACAAA+GGG | + | chr1_3:9109013-9109032 | None:intergenic | 25.0% |
| !!! | ATGATTCAATTTTAGCACAA+AGG | + | chr1_3:9109014-9109033 | None:intergenic | 25.0% |
| ! | TAAAATTGAATCATGTGTGT+GGG | - | chr1_3:9109020-9109039 | Msa0102350:intron | 25.0% |
| ! | AACTTTCACAACAATTAACA+TGG | - | chr1_3:9109301-9109320 | Msa0102350:intron | 25.0% |
| ! | GTGATAAATTGTGAATGAAT+TGG | + | chr1_3:9109451-9109470 | None:intergenic | 25.0% |
| !!! | TTTTTTGGGTGAATGAATAA+GGG | + | chr1_3:9109532-9109551 | None:intergenic | 25.0% |
| !!! | TTTTTTTGGGTGAATGAATA+AGG | + | chr1_3:9109533-9109552 | None:intergenic | 25.0% |
| ! | TGTCAAAATATCATTACTCT+TGG | + | chr1_3:9109697-9109716 | None:intergenic | 25.0% |
| ! | AATAAGAAGTGAGAAAAACA+AGG | + | chr1_3:9109747-9109766 | None:intergenic | 25.0% |
| !!! | TTGTTTTTCTCACTTCTTAT+TGG | - | chr1_3:9109746-9109765 | Msa0102350:intron | 25.0% |
| ! | TTCTTATTGGTCAAAAACAA+TGG | - | chr1_3:9109759-9109778 | Msa0102350:intron | 25.0% |
| !!! | AACCACTTTTTGACAATTTT+TGG | + | chr1_3:9109844-9109863 | None:intergenic | 25.0% |
| !! | GTGTATTTGTGATTTAGAAT+TGG | + | chr1_3:9109884-9109903 | None:intergenic | 25.0% |
| !! | TAGTTTTCTATCGTATGATA+TGG | + | chr1_3:9109925-9109944 | None:intergenic | 25.0% |
| ! | TGACTAATGATAACTTTCAA+TGG | + | chr1_3:9109979-9109998 | None:intergenic | 25.0% |
| !!! | ATTTACTTTTTTGTATCGAG+AGG | - | chr1_3:9110185-9110204 | Msa0102350:intron | 25.0% |
| !!! | TTTACTTTTTTGTATCGAGA+GGG | - | chr1_3:9110186-9110205 | Msa0102350:intron | 25.0% |
| !! | ATTAATTCACCTTGTTATGA+TGG | + | chr1_3:9110256-9110275 | None:intergenic | 25.0% |
| ! | TTGTAAATAACTACGAAACA+AGG | + | chr1_3:9111255-9111274 | None:intergenic | 25.0% |
| ! | CAAATTCTTTATGATTGTCT+TGG | - | chr1_3:9111384-9111403 | Msa0102350:CDS | 25.0% |
| ! | TGATCACCTATAAATAATGT+AGG | - | chr1_3:9111525-9111544 | Msa0102350:five_prime_UTR | 25.0% |
| ! | GATCACCTATAAATAATGTA+GGG | - | chr1_3:9111526-9111545 | Msa0102350:five_prime_UTR | 25.0% |
| ! | ATCACCTATAAATAATGTAG+GGG | - | chr1_3:9111527-9111546 | Msa0102350:five_prime_UTR | 25.0% |
| AAATGTACTCTCTCTTTCAT+GGG | + | chr1_3:9107270-9107289 | None:intergenic | 30.0% | |
| AAAATGTACTCTCTCTTTCA+TGG | + | chr1_3:9107271-9107290 | None:intergenic | 30.0% | |
| !! | TTCTTTTGTTTGTGTTTTGG+GGG | + | chr1_3:9107374-9107393 | None:intergenic | 30.0% |
| !! | GTTCTTTTGTTTGTGTTTTG+GGG | + | chr1_3:9107375-9107394 | None:intergenic | 30.0% |
| !! | GGTTCTTTTGTTTGTGTTTT+GGG | + | chr1_3:9107376-9107395 | None:intergenic | 30.0% |
| !! | TGGTTCTTTTGTTTGTGTTT+TGG | + | chr1_3:9107377-9107396 | None:intergenic | 30.0% |
| !!! | GTTTTTGTTTCTGTTTTGGT+TGG | + | chr1_3:9107397-9107416 | None:intergenic | 30.0% |
| ! | GAGTAACCATTATTGTTGTT+TGG | + | chr1_3:9107518-9107537 | None:intergenic | 30.0% |
| AACATTATGTTAACCTGCTA+GGG | + | chr1_3:9107835-9107854 | None:intergenic | 30.0% | |
| AAACATTATGTTAACCTGCT+AGG | + | chr1_3:9107836-9107855 | None:intergenic | 30.0% | |
| ! | GTAACTACATCCAACTTTTT+AGG | + | chr1_3:9108314-9108333 | None:intergenic | 30.0% |
| ACTATTACTGCAGTCATTTA+TGG | + | chr1_3:9108835-9108854 | None:intergenic | 30.0% | |
| CTTGTATTCCAATTAATGCA+CGG | - | chr1_3:9108884-9108903 | Msa0102350:intron | 30.0% | |
| CTAAAATTGAATCATGTGTG+TGG | - | chr1_3:9109019-9109038 | Msa0102350:intron | 30.0% | |
| AAAATTGAATCATGTGTGTG+GGG | - | chr1_3:9109021-9109040 | Msa0102350:intron | 30.0% | |
| ! | CATCTTCGAAATTTGAAACA+AGG | - | chr1_3:9109061-9109080 | Msa0102350:intron | 30.0% |
| ! | TTCGAAATTTGAAACAAGGA+GGG | - | chr1_3:9109065-9109084 | Msa0102350:intron | 30.0% |
| TACTAAGATATTGACATGCA+CGG | + | chr1_3:9109107-9109126 | None:intergenic | 30.0% | |
| TTGCTAGAACCAATTAACAT+TGG | - | chr1_3:9109252-9109271 | Msa0102350:intron | 30.0% | |
| TCAACAAAGTTGTCATCAAA+TGG | + | chr1_3:9109721-9109740 | None:intergenic | 30.0% | |
| AAAACAATGGAGAGAGAAAA+AGG | - | chr1_3:9109772-9109791 | Msa0102350:intron | 30.0% | |
| GTCCAAAAATTGTCAAAAAG+TGG | - | chr1_3:9109839-9109858 | Msa0102350:intron | 30.0% | |
| ! | CCTTGGTTTGAATTTCTATA+TGG | + | chr1_3:9110049-9110068 | None:intergenic | 30.0% |
| CCATATAGAAATTCAAACCA+AGG | - | chr1_3:9110046-9110065 | Msa0102350:intron | 30.0% | |
| ! | TAGGAATCTAATCCTTTTTC+AGG | - | chr1_3:9110087-9110106 | Msa0102350:intron | 30.0% |
| !!! | GAAAGTATCATGAGTTTTCA+TGG | + | chr1_3:9110476-9110495 | None:intergenic | 30.0% |
| ! | TTGTACTTGTTGAACAGTTT+CGG | - | chr1_3:9110654-9110673 | Msa0102350:intron | 30.0% |
| AGATAATCTTCAAATCTAGC+TGG | - | chr1_3:9110713-9110732 | Msa0102350:intron | 30.0% | |
| CTTTATGATTGTCTTGGATT+TGG | - | chr1_3:9111390-9111409 | Msa0102350:CDS | 30.0% | |
| CATTCCCCTACATTATTTAT+AGG | + | chr1_3:9111534-9111553 | None:intergenic | 30.0% | |
| TTGGATTGAGAATTAATGAG+AGG | - | chr1_3:9111572-9111591 | Msa0102350:five_prime_UTR | 30.0% | |
| ATTGAGGTTGAAGAAAAGGT+TGG | + | chr1_3:9107239-9107258 | None:intergenic | 35.0% | |
| AGAGATTGAGGTTGAAGAAA+AGG | + | chr1_3:9107243-9107262 | None:intergenic | 35.0% | |
| ATTGTTCAGGCAAGGAATTA+AGG | + | chr1_3:9107334-9107353 | None:intergenic | 35.0% | |
| !!! | GGTGGTTTTTGTTTTGGTTT+TGG | + | chr1_3:9107419-9107438 | None:intergenic | 35.0% |
| !! | GAAGAAGGTGGTTTTTGTTT+TGG | + | chr1_3:9107425-9107444 | None:intergenic | 35.0% |
| AACAAAAACCACCTTCTTCA+TGG | - | chr1_3:9107426-9107445 | Msa0102350:three_prime_UTR | 35.0% | |
| ACAAAAACCACCTTCTTCAT+GGG | - | chr1_3:9107427-9107446 | Msa0102350:three_prime_UTR | 35.0% | |
| TTTATTTGGTCCCATGAAGA+AGG | + | chr1_3:9107440-9107459 | None:intergenic | 35.0% | |
| !! | AACATCTCTGAAGCTACAAA+TGG | + | chr1_3:9107564-9107583 | None:intergenic | 35.0% |
| GAAACACTAGAGTTGTTCAT+AGG | - | chr1_3:9107591-9107610 | Msa0102350:CDS | 35.0% | |
| ACATCATCATCATCTTCAAG+AGG | - | chr1_3:9107758-9107777 | Msa0102350:CDS | 35.0% | |
| ATGCAGTTTAGAAAGCTATC+TGG | - | chr1_3:9107782-9107801 | Msa0102350:CDS | 35.0% | |
| ! | CATAATGTGCTTCTAGGAAT+TGG | + | chr1_3:9108500-9108519 | None:intergenic | 35.0% |
| TTATGTCGTTGTGATAAGTG+TGG | - | chr1_3:9108515-9108534 | Msa0102350:intron | 35.0% | |
| GTTCCAAGCTTTCAATCTTA+GGG | + | chr1_3:9108550-9108569 | None:intergenic | 35.0% | |
| AGTTCCAAGCTTTCAATCTT+AGG | + | chr1_3:9108551-9108570 | None:intergenic | 35.0% | |
| !! | AACATTAGCTTTGCTAGTAG+TGG | + | chr1_3:9108777-9108796 | None:intergenic | 35.0% |
| TCTTGTTACCGTGCATTAAT+TGG | + | chr1_3:9108895-9108914 | None:intergenic | 35.0% | |
| CGGTAACAAGAATTTAGATC+TGG | - | chr1_3:9108904-9108923 | Msa0102350:intron | 35.0% | |
| ! | CTTCGAAATTTGAAACAAGG+AGG | - | chr1_3:9109064-9109083 | Msa0102350:intron | 35.0% |
| !!! | CATAACAAATGCACTGGTTT+TGG | + | chr1_3:9109485-9109504 | None:intergenic | 35.0% |
| ATGACTCATAACAAATGCAC+TGG | + | chr1_3:9109491-9109510 | None:intergenic | 35.0% | |
| TATCTCATCTCGTACGTATA+AGG | + | chr1_3:9109586-9109605 | None:intergenic | 35.0% | |
| !! | TACTCTTGGAATTGATAGTG+TGG | + | chr1_3:9109683-9109702 | None:intergenic | 35.0% |
| !! | CGTGAAAAGTATCCTGAAAA+AGG | + | chr1_3:9110102-9110121 | None:intergenic | 35.0% |
| AGTATCACTCCATCATAACA+AGG | - | chr1_3:9110244-9110263 | Msa0102350:CDS | 35.0% | |
| TTCTCCAACTGAATTGTCAT+GGG | + | chr1_3:9111052-9111071 | None:intergenic | 35.0% | |
| ! | AGTTGGAGAAGATTCTAGAA+GGG | - | chr1_3:9111062-9111081 | Msa0102350:CDS | 35.0% |
| !!! | GGTGTGTTTTGATTCTATTG+CGG | - | chr1_3:9111167-9111186 | Msa0102350:CDS | 35.0% |
| AAACAAGGAAGAATAGCTCT+TGG | + | chr1_3:9111240-9111259 | None:intergenic | 35.0% | |
| ! | TATCAACCATGCAAGGTATT+CGG | + | chr1_3:9111294-9111313 | None:intergenic | 35.0% |
| TTAGATCGCGTATCAAGATT+GGG | + | chr1_3:9111481-9111500 | None:intergenic | 35.0% | |
| ATTAGATCGCGTATCAAGAT+TGG | + | chr1_3:9111482-9111501 | None:intergenic | 35.0% | |
| AGGAATTAAGGAGAGCCATT+AGG | + | chr1_3:9107322-9107341 | None:intergenic | 40.0% | |
| !!! | TGTTTTGGGGGTGTTTTCTT+GGG | + | chr1_3:9107362-9107381 | None:intergenic | 40.0% |
| CTTCGATCTGTTTGCATGAT+AGG | + | chr1_3:9107469-9107488 | None:intergenic | 40.0% | |
| CTATCATGCAAACAGATCGA+AGG | - | chr1_3:9107467-9107486 | Msa0102350:three_prime_UTR | 40.0% | |
| AGCTTCAGAGATGTTGTTCA+TGG | - | chr1_3:9107569-9107588 | Msa0102350:CDS | 40.0% | |
| ATCACCAGAGAGTAGTATCT+TGG | - | chr1_3:9107625-9107644 | Msa0102350:CDS | 40.0% | |
| TCACCAGAGAGTAGTATCTT+GGG | - | chr1_3:9107626-9107645 | Msa0102350:CDS | 40.0% | |
| !! | TGTTCTGGGAAATCATCCAA+CGG | - | chr1_3:9107722-9107741 | Msa0102350:CDS | 40.0% |
| GTGTATGTGATTGCAAACTC+AGG | - | chr1_3:9108471-9108490 | Msa0102350:intron | 40.0% | |
| CAACGACATAATGTGCTTCT+AGG | + | chr1_3:9108506-9108525 | None:intergenic | 40.0% | |
| CTTCCCTAAGATTGAAAGCT+TGG | - | chr1_3:9108544-9108563 | Msa0102350:intron | 40.0% | |
| TTGAAACAAGGAGGGCAAAA+AGG | - | chr1_3:9109073-9109092 | Msa0102350:intron | 40.0% | |
| AAGATATTGACATGCACGGA+TGG | + | chr1_3:9109103-9109122 | None:intergenic | 40.0% | |
| !!! | ACAAATGCACTGGTTTTGGT+GGG | + | chr1_3:9109481-9109500 | None:intergenic | 40.0% |
| !!! | AACAAATGCACTGGTTTTGG+TGG | + | chr1_3:9109482-9109501 | None:intergenic | 40.0% |
| GATGAGATATCACAGCTGTA+TGG | - | chr1_3:9109597-9109616 | Msa0102350:intron | 40.0% | |
| AATCAAGAGTTGTCACGTTG+TGG | + | chr1_3:9109648-9109667 | None:intergenic | 40.0% | |
| ACGTGACAACTCTTGATTTC+TGG | - | chr1_3:9109650-9109669 | Msa0102350:intron | 40.0% | |
| !! | CTTGGAATTGATAGTGTGGA+TGG | + | chr1_3:9109679-9109698 | None:intergenic | 40.0% |
| AGAGAGAAAAAGGAAGAGAG+AGG | - | chr1_3:9109782-9109801 | Msa0102350:intron | 40.0% | |
| ! | CTTTCAATGGAAGAGAGTGT+TGG | + | chr1_3:9109966-9109985 | None:intergenic | 40.0% |
| CTCCAATGTGCAAGATTGAA+CGG | - | chr1_3:9110749-9110768 | Msa0102350:intron | 40.0% | |
| ATCCGTTCAATCTTGCACAT+TGG | + | chr1_3:9110754-9110773 | None:intergenic | 40.0% | |
| ACACACAACGAACAATCCAA+CGG | - | chr1_3:9110788-9110807 | Msa0102350:intron | 40.0% | |
| !!! | TGGATTTTTCTTGGTGGTGT+TGG | + | chr1_3:9110851-9110870 | None:intergenic | 40.0% |
| ACACCACCAAGAAAAATCCA+CGG | - | chr1_3:9110851-9110870 | Msa0102350:intron | 40.0% | |
| !! | CTTTCTTTTGAAAACCGTGC+CGG | + | chr1_3:9110996-9111015 | None:intergenic | 40.0% |
| ! | CACGGTTTTCAAAAGAAAGG+TGG | - | chr1_3:9110997-9111016 | Msa0102350:CDS | 40.0% |
| CTTCTCCAACTGAATTGTCA+TGG | + | chr1_3:9111053-9111072 | None:intergenic | 40.0% | |
| CAGTTGGAGAAGATTCTAGA+AGG | - | chr1_3:9111061-9111080 | Msa0102350:CDS | 40.0% | |
| ! | AGATTCTAGAAGGGCAATGT+TGG | - | chr1_3:9111071-9111090 | Msa0102350:CDS | 40.0% |
| ATTCTATTGCGGAGAATGCT+GGG | - | chr1_3:9111178-9111197 | Msa0102350:CDS | 40.0% | |
| ! | ACCTTGCATGGTTGATATCA+CGG | - | chr1_3:9111297-9111316 | Msa0102350:CDS | 40.0% |
| TAGATCGCGTATCAAGATTG+GGG | + | chr1_3:9111480-9111499 | None:intergenic | 40.0% | |
| TTCATGGGAGAGAGAGATTG+AGG | + | chr1_3:9107255-9107274 | None:intergenic | 45.0% | |
| !!! | GTTTTGGGGGTGTTTTCTTG+GGG | + | chr1_3:9107361-9107380 | None:intergenic | 45.0% |
| !!! | GTGTTTTGGGGGTGTTTTCT+TGG | + | chr1_3:9107363-9107382 | None:intergenic | 45.0% |
| ATTTGGTCCCATGAAGAAGG+TGG | + | chr1_3:9107437-9107456 | None:intergenic | 45.0% | |
| CGATCTGTTTGCATGATAGG+AGG | + | chr1_3:9107466-9107485 | None:intergenic | 45.0% | |
| TGACCCAAGATACTACTCTC+TGG | + | chr1_3:9107632-9107651 | None:intergenic | 45.0% | |
| ! | GATGATGATGAAGCAGTGAC+AGG | + | chr1_3:9107680-9107699 | None:intergenic | 45.0% |
| TCGTTGTGATAAGTGTGGAG+AGG | - | chr1_3:9108520-9108539 | Msa0102350:intron | 45.0% | |
| ATATTGACATGCACGGATGG+TGG | + | chr1_3:9109100-9109119 | None:intergenic | 45.0% | |
| AACCAAGGTAGCCAAGTTGT+AGG | - | chr1_3:9110061-9110080 | Msa0102350:intron | 45.0% | |
| ACCAAGGTAGCCAAGTTGTA+GGG | - | chr1_3:9110062-9110081 | Msa0102350:intron | 45.0% | |
| GATTCCTAGTCCCTACAACT+TGG | + | chr1_3:9110075-9110094 | None:intergenic | 45.0% | |
| TTGTTGAACAGTTTCGGAGC+TGG | - | chr1_3:9110660-9110679 | Msa0102350:intron | 45.0% | |
| TGTTGAACAGTTTCGGAGCT+GGG | - | chr1_3:9110661-9110680 | Msa0102350:intron | 45.0% | |
| ! | ATGTTTCTGCCTGAATCCTC+TGG | + | chr1_3:9110688-9110707 | None:intergenic | 45.0% |
| GGATTGTTCGTTGTGTGTTG+TGG | + | chr1_3:9110786-9110805 | None:intergenic | 45.0% | |
| ! | ACACCGTGGATTTTTCTTGG+TGG | + | chr1_3:9110857-9110876 | None:intergenic | 45.0% |
| ATAGCGATGTGCTGTGGAAA+CGG | + | chr1_3:9110903-9110922 | None:intergenic | 45.0% | |
| GCGGAGTTTGCAACATAATC+CGG | - | chr1_3:9110974-9110993 | Msa0102350:CDS | 45.0% | |
| GTTTGCAACATAATCCGGCA+CGG | - | chr1_3:9110979-9110998 | Msa0102350:CDS | 45.0% | |
| ! | CGGCACGGTTTTCAAAAGAA+AGG | - | chr1_3:9110994-9111013 | Msa0102350:CDS | 45.0% |
| GTGAAGACCAATGCTAGTAG+TGG | - | chr1_3:9111021-9111040 | Msa0102350:CDS | 45.0% | |
| AGACCAATGCTAGTAGTGGT+AGG | - | chr1_3:9111025-9111044 | Msa0102350:CDS | 45.0% | |
| GACCAATGCTAGTAGTGGTA+GGG | - | chr1_3:9111026-9111045 | Msa0102350:CDS | 45.0% | |
| GATTCTATTGCGGAGAATGC+TGG | - | chr1_3:9111177-9111196 | Msa0102350:CDS | 45.0% | |
| ! | TGCAAGGTATTCGGTCAACA+TGG | + | chr1_3:9111285-9111304 | None:intergenic | 45.0% |
| TGTTGACCGAATACCTTGCA+TGG | - | chr1_3:9111285-9111304 | Msa0102350:CDS | 45.0% | |
| ACCGTGATATCAACCATGCA+AGG | + | chr1_3:9111301-9111320 | None:intergenic | 45.0% | |
| !!! | TATTTTTTTAACAATATTAT+TGG | - | chr1_3:9108070-9108089 | Msa0102350:CDS | 5.0% |
| !! | CATAAAATATATATATATAT+TGG | + | chr1_3:9110568-9110587 | None:intergenic | 5.0% |
| TTCTTGGGGTGGGATTGTTC+AGG | + | chr1_3:9107347-9107366 | None:intergenic | 50.0% | |
| ACTCGCTCTGCATCATGTTC+TGG | - | chr1_3:9107707-9107726 | Msa0102350:CDS | 50.0% | |
| CTCGCTCTGCATCATGTTCT+GGG | - | chr1_3:9107708-9107727 | Msa0102350:CDS | 50.0% | |
| TCTGGGAAATCATCCAACGG+TGG | - | chr1_3:9107725-9107744 | Msa0102350:CDS | 50.0% | |
| TGTGTAGTTTCCTCCACCGT+TGG | + | chr1_3:9107741-9107760 | None:intergenic | 50.0% | |
| ACATGATCGTTGACCCTAGC+AGG | - | chr1_3:9107819-9107838 | Msa0102350:CDS | 50.0% | |
| CATCAAGCTGTTCGACATGC+AGG | - | chr1_3:9108572-9108591 | Msa0102350:intron | 50.0% | |
| CAAGAGTTGTCACGTTGTGG+AGG | + | chr1_3:9109645-9109664 | None:intergenic | 50.0% | |
| TCCCTACAACTTGGCTACCT+TGG | + | chr1_3:9110066-9110085 | None:intergenic | 50.0% | |
| GTAGCCAAGTTGTAGGGACT+AGG | - | chr1_3:9110068-9110087 | Msa0102350:intron | 50.0% | |
| ACGAACAATCCAACGGTTCG+AGG | - | chr1_3:9110795-9110814 | Msa0102350:intron | 50.0% | |
| !! | TCTTGGTGGTGTTGGATGCA+CGG | + | chr1_3:9110843-9110862 | None:intergenic | 50.0% |
| ! | GGCACACCGTGGATTTTTCT+TGG | + | chr1_3:9110860-9110879 | None:intergenic | 50.0% |
| ACATCGCTATCGTGTGCACT+CGG | - | chr1_3:9110913-9110932 | Msa0102350:intron | 50.0% | |
| ATGTTGCAAACTCCGCATCC+AGG | + | chr1_3:9110970-9110989 | None:intergenic | 50.0% | |
| AGGGCCCATGACAATTCAGT+TGG | - | chr1_3:9111045-9111064 | Msa0102350:CDS | 50.0% | |
| ATTTCCTCCTCTGACACCAC+CGG | + | chr1_3:9111147-9111166 | None:intergenic | 50.0% | |
| !!! | TGGGGGTGTTTTCTTGGGGT+GGG | + | chr1_3:9107357-9107376 | None:intergenic | 55.0% |
| !!! | TTGGGGGTGTTTTCTTGGGG+TGG | + | chr1_3:9107358-9107377 | None:intergenic | 55.0% |
| GGGAAATCATCCAACGGTGG+AGG | - | chr1_3:9107728-9107747 | Msa0102350:CDS | 55.0% | |
| AGTTGTCACGTTGTGGAGGC+AGG | + | chr1_3:9109641-9109660 | None:intergenic | 55.0% | |
| CTCTGCATTCCTCGAACCGT+TGG | + | chr1_3:9110807-9110826 | None:intergenic | 55.0% | |
| GTTCGAGGAATGCAGAGACG+CGG | - | chr1_3:9110810-9110829 | Msa0102350:intron | 55.0% | |
| !! | CTTGGTGGTGTTGGATGCAC+GGG | + | chr1_3:9110842-9110861 | None:intergenic | 55.0% |
| GAAAAATCCACGGTGTGCCG+CGG | - | chr1_3:9110861-9110880 | Msa0102350:intron | 55.0% | |
| CACACGATAGCGATGTGCTG+TGG | + | chr1_3:9110909-9110928 | None:intergenic | 55.0% | |
| GGCCCTACCACTACTAGCAT+TGG | + | chr1_3:9111031-9111050 | None:intergenic | 55.0% | |
| TCACTTTCCCGGCAATCACG+CGG | + | chr1_3:9111101-9111120 | None:intergenic | 55.0% | |
| ! | GGTGGTGTCAGAGGAGGAAA+TGG | - | chr1_3:9111146-9111165 | Msa0102350:CDS | 55.0% |
| GGGGTGGGATTGTTCAGGCA+AGG | + | chr1_3:9107342-9107361 | None:intergenic | 60.0% | |
| AGTTTCGGAGCTGGGTCCAG+AGG | - | chr1_3:9110669-9110688 | Msa0102350:intron | 60.0% | |
| GAGCTGGGTCCAGAGGATTC+AGG | - | chr1_3:9110676-9110695 | Msa0102350:intron | 60.0% | |
| GCGATGTGCTGTGGAAACGG+AGG | + | chr1_3:9110900-9110919 | None:intergenic | 60.0% | |
| !! | TCGTGTGCACTCGGTGCAAG+TGG | - | chr1_3:9110922-9110941 | Msa0102350:intron | 60.0% |
| GCAAACTCCGCATCCAGGCA+CGG | + | chr1_3:9110965-9110984 | None:intergenic | 60.0% | |
| TTGGTGTGCCGCGTGATTGC+CGG | - | chr1_3:9111090-9111109 | Msa0102350:CDS | 60.0% | |
| AATCCACGGTGTGCCGCGGA+CGG | - | chr1_3:9110865-9110884 | Msa0102350:intron | 65.0% | |
| GAGGAGTTCGTTGCCGTCCG+CGG | + | chr1_3:9110881-9110900 | None:intergenic | 65.0% | |
| GCATCCAGGCACGGCGCAAA+GGG | + | chr1_3:9110956-9110975 | None:intergenic | 65.0% | |
| CTTTGCGCCGTGCCTGGATG+CGG | - | chr1_3:9110955-9110974 | Msa0102350:intron | 65.0% | |
| TGGTGTGCCGCGTGATTGCC+GGG | - | chr1_3:9111091-9111110 | Msa0102350:CDS | 65.0% | |
| TGCCGGGAAAGTGAAGCGCG+TGG | - | chr1_3:9111107-9111126 | Msa0102350:CDS | 65.0% | |
| CGCCACGCGCTTCACTTTCC+CGG | + | chr1_3:9111112-9111131 | None:intergenic | 65.0% | |
| CGGGAAAGTGAAGCGCGTGG+CGG | - | chr1_3:9111110-9111129 | Msa0102350:CDS | 65.0% | |
| GAAAGTGAAGCGCGTGGCGG+AGG | - | chr1_3:9111113-9111132 | Msa0102350:CDS | 65.0% | |
| ! | AGGTGCACCGGTGGTGTCAG+AGG | - | chr1_3:9111137-9111156 | Msa0102350:CDS | 65.0% |
| ! | TGCACCGGTGGTGTCAGAGG+AGG | - | chr1_3:9111140-9111159 | Msa0102350:CDS | 65.0% |
| TCCAGGCACGGCGCAAAGGG+CGG | + | chr1_3:9110953-9110972 | None:intergenic | 70.0% | |
| CGCATCCAGGCACGGCGCAA+AGG | + | chr1_3:9110957-9110976 | None:intergenic | 70.0% | |
| ! | GTGAAGCGCGTGGCGGAGGA+AGG | - | chr1_3:9111117-9111136 | Msa0102350:CDS | 70.0% |
| ! | CGTGGCGGAGGAAGGTGCAC+CGG | - | chr1_3:9111125-9111144 | Msa0102350:CDS | 70.0% |
| TTGCCGTCCGCGGCACACCG+TGG | + | chr1_3:9110871-9110890 | None:intergenic | 75.0% | |
| AGGCACGGCGCAAAGGGCGG+AGG | + | chr1_3:9110950-9110969 | None:intergenic | 75.0% | |
| TCCGCCCTTTGCGCCGTGCC+TGG | - | chr1_3:9110949-9110968 | Msa0102350:intron | 75.0% | |
| ! | GGCGGAGGAAGGTGCACCGG+TGG | - | chr1_3:9111128-9111147 | Msa0102350:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 9107201 | 9111599 | 9107201 | ID=Msa0102350;Name=Msa0102350 |
| chr1_3 | mRNA | 9107201 | 9111599 | 9107201 | ID=Msa0102350-mRNA-1;Parent=Msa0102350;Name=Msa0102350-mRNA-1;_AED=0.00;_eAED=0.00;_QI=122|1|1|1|1|1|3|309|412 |
| chr1_3 | exon | 9107201 | 9108129 | 9107201 | ID=Msa0102350-mRNA-1:exon:3686;Parent=Msa0102350-mRNA-1 |
| chr1_3 | exon | 9110207 | 9110307 | 9110207 | ID=Msa0102350-mRNA-1:exon:3685;Parent=Msa0102350-mRNA-1 |
| chr1_3 | exon | 9110960 | 9111599 | 9110960 | ID=Msa0102350-mRNA-1:exon:3684;Parent=Msa0102350-mRNA-1 |
| chr1_3 | five_prime_UTR | 9111478 | 9111599 | 9111478 | ID=Msa0102350-mRNA-1:five_prime_utr;Parent=Msa0102350-mRNA-1 |
| chr1_3 | CDS | 9110960 | 9111477 | 9110960 | ID=Msa0102350-mRNA-1:cds;Parent=Msa0102350-mRNA-1 |
| chr1_3 | CDS | 9110207 | 9110307 | 9110207 | ID=Msa0102350-mRNA-1:cds;Parent=Msa0102350-mRNA-1 |
| chr1_3 | CDS | 9107510 | 9108129 | 9107510 | ID=Msa0102350-mRNA-1:cds;Parent=Msa0102350-mRNA-1 |
| chr1_3 | three_prime_UTR | 9107201 | 9107509 | 9107201 | ID=Msa0102350-mRNA-1:three_prime_utr;Parent=Msa0102350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
