AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0103690

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0103690 MtrunA17_Chr1g0146231 94.767 344 14 2 1 340 1 344 0.0 650
Msa0103690 MtrunA17_Chr3g0140331 55.247 324 116 8 19 340 68 364 1.08e-103 308
Msa0103690 MtrunA17_Chr8g0340401 46.884 337 131 12 23 340 35 342 4.54e-78 242
Msa0103690 MtrunA17_Chr8g0372291 47.317 205 90 5 96 300 102 288 1.36e-46 159
Msa0103690 MtrunA17_Chr4g0035891 34.615 312 141 10 5 299 15 280 5.25e-43 150
Msa0103690 MtrunA17_Chr6g0461591 39.732 224 101 6 107 296 35 258 5.27e-41 144
Msa0103690 MtrunA17_Chr5g0404981 44.156 231 95 7 94 300 150 370 2.91e-39 143
Msa0103690 MtrunA17_Chr1g0199671 35.463 313 142 11 27 294 9 306 1.14e-37 137
Msa0103690 MtrunA17_Chr3g0145121 37.209 215 117 3 87 300 88 285 2.06e-37 135
Msa0103690 MtrunA17_Chr1g0169431 78.873 71 15 0 229 299 171 241 7.60e-35 127
Msa0103690 MtrunA17_Chr7g0253101 39.370 254 110 10 73 294 11 252 7.92e-35 128
Msa0103690 MtrunA17_Chr5g0395391 74.648 71 18 0 229 299 269 339 5.58e-33 125
Msa0103690 MtrunA17_Chr5g0395391 39.234 209 94 4 101 300 54 238 7.25e-29 114
Msa0103690 MtrunA17_Chr1g0213161 55.963 109 43 2 209 316 130 234 3.54e-32 120
Msa0103690 MtrunA17_Chr2g0326771 76.923 65 15 0 230 294 216 280 1.36e-31 120
Msa0103690 MtrunA17_Chr4g0028961 73.134 67 18 0 230 296 232 298 6.64e-31 119
Msa0103690 MtrunA17_Chr7g0232671 62.903 62 23 0 230 291 187 248 2.81e-21 91.3
Msa0103690 MtrunA17_Chr7g0232701 58.065 62 26 0 230 291 73 134 2.71e-19 82.8
Msa0103690 MtrunA17_Chr7g0232681 33.495 206 105 8 88 291 18 193 4.95e-19 84.0
Msa0103690 MtrunA17_Chr7g0271861 70.588 34 10 0 232 265 24 57 2.14e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0103690 AT5G25830.1 56.981 265 97 7 93 340 67 331 6.52e-92 278
Msa0103690 AT4G32890.1 43.881 335 131 9 21 340 16 308 5.48e-80 246
Msa0103690 AT3G60530.1 48.309 207 63 6 93 298 63 226 3.73e-49 165
Msa0103690 AT2G45050.1 43.277 238 79 7 89 310 60 257 8.65e-49 165
Msa0103690 AT5G66320.2 38.519 270 116 8 69 312 86 331 3.70e-39 142
Msa0103690 AT5G66320.1 38.519 270 116 8 69 312 86 331 3.70e-39 142
Msa0103690 AT4G36240.1 37.544 285 106 9 22 297 10 231 6.18e-39 138
Msa0103690 AT4G34680.1 38.710 217 82 5 90 299 77 249 1.43e-36 133
Msa0103690 AT4G34680.2 38.710 217 82 5 90 299 77 249 1.43e-36 133
Msa0103690 AT3G51080.1 34.304 309 157 10 6 298 11 289 3.17e-34 128
Msa0103690 AT3G24050.1 74.286 70 18 0 229 298 193 262 2.64e-33 124
Msa0103690 AT1G08010.2 65.476 84 23 1 225 302 215 298 3.82e-33 125
Msa0103690 AT1G08010.1 65.476 84 23 1 225 302 215 298 3.82e-33 125
Msa0103690 AT1G08010.3 65.476 84 23 1 225 302 215 298 3.82e-33 125
Msa0103690 AT1G08000.2 70.833 72 21 0 225 296 213 284 3.59e-31 120
Msa0103690 AT1G08000.1 70.833 72 21 0 225 296 213 284 3.59e-31 120
Msa0103690 AT3G54810.1 62.963 81 30 0 230 310 229 309 6.38e-31 119
Msa0103690 AT3G54810.2 62.963 81 30 0 230 310 229 309 6.38e-31 119
Msa0103690 AT2G28340.1 69.841 63 19 0 232 294 193 255 1.35e-26 107
Msa0103690 AT3G45170.1 64.179 67 24 0 232 298 117 183 2.68e-26 104

Find 117 sgRNAs with CRISPR-Local

Find 286 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGTCACTGTCCTTTCTTCT+TGG 0.090798 1_3:-11026802 None:intergenic
CCAATATCAGGAACGACATT+AGG 0.287162 1_3:-11025935 None:intergenic
GCAGTCTTTGCCTGCTTCCT+TGG 0.291400 1_3:-11026778 None:intergenic
TACTCTGATGTTGTAAAATC+TGG 0.292416 1_3:-11027080 None:intergenic
TATATTCAACAAGGAAGTTT+TGG 0.298704 1_3:+11026612 Msa0103690:CDS
CTAGCTGCAGGCCTGTATTC+AGG 0.333508 1_3:-11026958 None:intergenic
CTCCGGAGACCTGTGTGTTC+CGG 0.345236 1_3:+11025985 Msa0103690:CDS
CAAAAGATGCAACTGATATC+AGG 0.358334 1_3:+11026526 Msa0103690:CDS
CCTAATGTCGTTCCTGATAT+TGG 0.361673 1_3:+11025935 Msa0103690:CDS
AAAACTTCCTTGTTGAATAT+AGG 0.362486 1_3:-11026610 None:intergenic
GAAATAGGAGGATGCTTTAC+GGG 0.365602 1_3:+11026450 Msa0103690:intron
CGACGTCATTGTTGAGGTTA+AGG 0.370723 1_3:-11025790 None:intergenic
TGTTGAATATAGGACTGTTT+CGG 0.382615 1_3:-11026600 None:intergenic
AAGACACCACAATGGCGAAC+CGG 0.386976 1_3:+11026871 Msa0103690:CDS
ACGATGCGAGTTGGAGTGTT+TGG 0.387998 1_3:-11026998 None:intergenic
AAATTCTGACAGCCAATATC+AGG 0.389939 1_3:-11025947 None:intergenic
TGAAATAGGAGGATGCTTTA+CGG 0.392306 1_3:+11026449 Msa0103690:intron
TTACTTGATTCACCAACATA+TGG 0.405233 1_3:+11027131 Msa0103690:CDS
AGGACTGTTTCGGTTGGGTT+GGG 0.406165 1_3:-11026590 None:intergenic
GTTGGGTTGGGAAAGCTCAC+GGG 0.412320 1_3:-11026578 None:intergenic
CAATGGCGAACCGGGCCTAA+TGG 0.414512 1_3:+11026880 Msa0103690:CDS
CACACAGGTCTCCGGAGAAA+TGG 0.416213 1_3:-11025979 None:intergenic
CACGGTAACGGTGGAGGAAG+AGG 0.434827 1_3:-11025873 None:intergenic
CAATATCAGGAACGACATTA+GGG 0.440367 1_3:-11025934 None:intergenic
CTCTTGCTACGGGCCTTAGC+TGG 0.442400 1_3:-11026637 None:intergenic
TGTCGGAGGAAAAGGTGGTT+TGG 0.443866 1_3:-11025733 None:intergenic
GGTTGGGTTGGGAAAGCTCA+CGG 0.448750 1_3:-11026579 None:intergenic
TACATCATCTGCCTAAAATC+AGG 0.450652 1_3:-11027156 None:intergenic
GCTCACGGGGTTCTTCGTCC+TGG 0.451765 1_3:-11026564 None:intergenic
AATATAGGACTGTTTCGGTT+GGG 0.459476 1_3:-11026595 None:intergenic
TAGGACTGTTTCGGTTGGGT+TGG 0.462649 1_3:-11026591 None:intergenic
AGTGTTGTTGTCGGAGGAAA+AGG 0.462952 1_3:-11025741 None:intergenic
AAGGACAGTGACGGAGGGTC+AGG 0.466229 1_3:+11026811 Msa0103690:CDS
GAGGCAGAAGGAAATGTTGC+GGG 0.466463 1_3:+11027038 Msa0103690:CDS
TACTTGATTCACCAACATAT+GGG 0.466490 1_3:+11027132 Msa0103690:CDS
CAACATTGGAAAGCCATTCC+AGG 0.469957 1_3:-11026474 None:intergenic
GTCGATTGGTGCCTGAATAC+AGG 0.470023 1_3:+11026947 Msa0103690:CDS
AGACACCACAATGGCGAACC+GGG 0.471491 1_3:+11026872 Msa0103690:CDS
GCCCACGAGTCCTCTTGCTA+CGG 0.473059 1_3:-11026648 None:intergenic
GGAGGATGCTTTACGGGACC+TGG 0.481852 1_3:+11026456 Msa0103690:intron
GAATATAGGACTGTTTCGGT+TGG 0.481982 1_3:-11026596 None:intergenic
GTTAGCTCGTCATCATTGTC+CGG 0.486841 1_3:+11025905 Msa0103690:CDS
ATGCTTTACGGGACCTGGAA+TGG 0.494601 1_3:+11026461 Msa0103690:CDS
GACGTGAGCTCCAGTCGCAA+GGG 0.498267 1_3:-11026672 None:intergenic
AATCAAGTAATCATCATTGT+TGG 0.499207 1_3:-11027118 None:intergenic
TGTTTGGTCAGCACAAATGT+AGG 0.504596 1_3:-11026982 None:intergenic
ATCGTAAAGTGTTGGAGCTA+CGG 0.505579 1_3:+11027016 Msa0103690:CDS
AAGGTTGGTGTCGGAAATGA+TGG 0.507635 1_3:-11025825 None:intergenic
ACAGTGATGGTAGGTAAGGC+GGG 0.516162 1_3:-11026754 None:intergenic
GGTGGTTTGGAAAATGTTGT+TGG 0.523159 1_3:-11025720 None:intergenic
TACCGACAATTTCATTGTTG+AGG 0.524862 1_3:+11025763 Msa0103690:CDS
AAACGATTCCTCAACAACAT+TGG 0.525151 1_3:-11026488 None:intergenic
TACCGGAACACACAGGTCTC+CGG 0.525459 1_3:-11025987 None:intergenic
ATTGACCACGGTAACGGTGG+AGG 0.527850 1_3:-11025879 None:intergenic
GCCCGTAGCAAGAGGACTCG+TGG 0.533598 1_3:+11026646 Msa0103690:CDS
AAGATACAAGTCGGGTCGAT+TGG 0.534399 1_3:+11026933 Msa0103690:CDS
TTCCGACACCAACCTTGACT+CGG 0.534554 1_3:+11025832 Msa0103690:CDS
AGGCATGAAGGTGCGAAACC+AGG 0.535516 1_3:+11026546 Msa0103690:CDS
CCCACGAGTCCTCTTGCTAC+GGG 0.537511 1_3:-11026647 None:intergenic
GACGGAGGGTCAGGTGGAGA+TGG 0.539597 1_3:+11026820 Msa0103690:CDS
GTTGTTGTCGGAGGAAAAGG+TGG 0.541025 1_3:-11025738 None:intergenic
GAGGGTCAGGTGGAGATGGT+CGG 0.544742 1_3:+11026824 Msa0103690:CDS
CTGCTTCCTTGGAACAGTGA+TGG 0.548423 1_3:-11026767 None:intergenic
CAACACTTTACGATGCGAGT+TGG 0.550252 1_3:-11027007 None:intergenic
TGGAACAGTGATGGTAGGTA+AGG 0.550597 1_3:-11026758 None:intergenic
CATCACTGTTCCAAGGAAGC+AGG 0.554828 1_3:+11026768 Msa0103690:CDS
AAAGACTGCTCCAAGAAGAA+AGG 0.555772 1_3:+11026792 Msa0103690:CDS
AACGCTATTGACCACGGTAA+CGG 0.557909 1_3:-11025885 None:intergenic
GACAGTGACGGAGGGTCAGG+TGG 0.558691 1_3:+11026814 Msa0103690:CDS
ACAAATGTAGGGCTAGCTGC+AGG 0.560737 1_3:-11026970 None:intergenic
AGACGTGAGCTCCAGTCGCA+AGG 0.560751 1_3:-11026673 None:intergenic
GTCCTCAACAATGAAATTGT+CGG 0.566137 1_3:-11025765 None:intergenic
AACAGTGATGGTAGGTAAGG+CGG 0.571647 1_3:-11026755 None:intergenic
TAAAATCAGGTCCCATATGT+TGG 0.573858 1_3:-11027143 None:intergenic
GTTTGGTCAGCACAAATGTA+GGG 0.574012 1_3:-11026981 None:intergenic
CCCGTAGCAAGAGGACTCGT+GGG 0.574146 1_3:+11026647 Msa0103690:CDS
TTGGGTTGGGAAAGCTCACG+GGG 0.578980 1_3:-11026577 None:intergenic
CAGCTAAGGCCCGTAGCAAG+AGG 0.579929 1_3:+11026638 Msa0103690:CDS
GGCCGAGTCAAGGTTGGTGT+CGG 0.584263 1_3:-11025834 None:intergenic
TTAGGCCCGGTTCGCCATTG+TGG 0.587065 1_3:-11026877 None:intergenic
TTAGCTCGTCATCATTGTCC+GGG 0.587117 1_3:+11025906 Msa0103690:CDS
GCAACTGATATCAGGCATGA+AGG 0.589173 1_3:+11026534 Msa0103690:CDS
TTGTGGTGTAAGATACAAGT+CGG 0.589234 1_3:+11026924 Msa0103690:CDS
AGTTGACTGTGGCCGAGTCA+AGG 0.589310 1_3:-11025844 None:intergenic
ATTCCCTACGTAGGAATGGA+AGG 0.590186 1_3:+11025692 None:intergenic
ATTGTCGGTAGTGTTGTTGT+CGG 0.590207 1_3:-11025750 None:intergenic
GGTCAGGTGGAGATGGTCGG+AGG 0.590443 1_3:+11026827 Msa0103690:CDS
GTCGGTAGTGTTGTTGTCGG+AGG 0.590547 1_3:-11025747 None:intergenic
TACCTACCATCACTGTTCCA+AGG 0.594004 1_3:+11026761 Msa0103690:CDS
CGTCGTCGACGTCATTGTTG+AGG 0.596242 1_3:-11025796 None:intergenic
ATGGCTTTCCAATGTTGTTG+AGG 0.597478 1_3:+11026480 Msa0103690:CDS
AACGACATTAGGGTCGCACC+CGG 0.603894 1_3:-11025924 None:intergenic
CAACTCGCATCGTAAAGTGT+TGG 0.604228 1_3:+11027008 Msa0103690:CDS
CTCTTCCTCCACCGTTACCG+TGG 0.606184 1_3:+11025874 Msa0103690:CDS
TGTGGTGTAAGATACAAGTC+GGG 0.608929 1_3:+11026925 Msa0103690:CDS
GTTGGAGCTACGGAGGCAGA+AGG 0.611025 1_3:+11027026 Msa0103690:CDS
CGTCATTGTTGAGGTTAAGG+AGG 0.612987 1_3:-11025787 None:intergenic
GACTGTGGCCGAGTCAAGGT+TGG 0.614521 1_3:-11025840 None:intergenic
ACGTGAGCTCCAGTCGCAAG+GGG 0.619626 1_3:-11026671 None:intergenic
GCTATTGACCACGGTAACGG+TGG 0.631846 1_3:-11025882 None:intergenic
GAAGAAAGGACAGTGACGGA+GGG 0.637953 1_3:+11026806 Msa0103690:CDS
AAAACATTATGCAACGCTTG+TGG 0.638941 1_3:+11026907 Msa0103690:CDS
CCAAGAAGAAAGGACAGTGA+CGG 0.640630 1_3:+11026802 Msa0103690:CDS
AGAAGAAAGGACAGTGACGG+AGG 0.643844 1_3:+11026805 Msa0103690:CDS
TTCCTTGGAACAGTGATGGT+AGG 0.661750 1_3:-11026763 None:intergenic
AGTGATGGTAGGTAAGGCGG+GGG 0.663791 1_3:-11026752 None:intergenic
GTAAAGTGTTGGAGCTACGG+AGG 0.667005 1_3:+11027019 Msa0103690:CDS
CAGTGATGGTAGGTAAGGCG+GGG 0.673174 1_3:-11026753 None:intergenic
GGAGGCAGAAGGAAATGTTG+CGG 0.675658 1_3:+11027037 Msa0103690:CDS
AGTTCTGACTCAGAAGAAGA+CGG 0.679246 1_3:-11026718 None:intergenic
GGTAACGGTGGAGGAAGAGG+CGG 0.684503 1_3:-11025870 None:intergenic
TATAATATACCGGAACACAC+AGG 0.691414 1_3:-11025994 None:intergenic
AAACAGTCCTATATTCAACA+AGG 0.707758 1_3:+11026603 Msa0103690:CDS
CGAGCTAACGCTATTGACCA+CGG 0.719172 1_3:-11025891 None:intergenic
CGTGAGCTCCAGTCGCAAGG+GGG 0.723454 1_3:-11026670 None:intergenic
TGACAGACAAGACACCACAA+TGG 0.724676 1_3:+11026863 Msa0103690:CDS
AGAGGCGGTTGAGTTGACTG+TGG 0.744548 1_3:-11025855 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATATACACATATAATATAC+CGG - chr1_3:11026007-11026026 None:intergenic 20.0%
!!! TTTTGTGATACTCAATAATT+TGG - chr1_3:11026306-11026325 None:intergenic 20.0%
!!! TTTGTGTTGAAATTTGAAAT+AGG + chr1_3:11026435-11026454 Msa0103690:intron 20.0%
!! CATATACACATATAATATAC+CGG - chr1_3:11026007-11026026 None:intergenic 20.0%
!!! TTTTGTGATACTCAATAATT+TGG - chr1_3:11026306-11026325 None:intergenic 20.0%
!!! TTTGTGTTGAAATTTGAAAT+AGG + chr1_3:11026435-11026454 Msa0103690:intron 20.0%
! CTGAAATTATTGGCAAAAAA+GGG - chr1_3:11026188-11026207 None:intergenic 25.0%
!!! GTTTTTTCTCCTGAAATTAT+TGG - chr1_3:11026198-11026217 None:intergenic 25.0%
! AAAACTTCCTTGTTGAATAT+AGG - chr1_3:11026613-11026632 None:intergenic 25.0%
!! TATATTCAACAAGGAAGTTT+TGG + chr1_3:11026612-11026631 Msa0103690:CDS 25.0%
! AATCAAGTAATCATCATTGT+TGG - chr1_3:11027121-11027140 None:intergenic 25.0%
! CTGAAATTATTGGCAAAAAA+GGG - chr1_3:11026188-11026207 None:intergenic 25.0%
!!! GTTTTTTCTCCTGAAATTAT+TGG - chr1_3:11026198-11026217 None:intergenic 25.0%
! AAAACTTCCTTGTTGAATAT+AGG - chr1_3:11026613-11026632 None:intergenic 25.0%
!! TATATTCAACAAGGAAGTTT+TGG + chr1_3:11026612-11026631 Msa0103690:CDS 25.0%
! AATCAAGTAATCATCATTGT+TGG - chr1_3:11027121-11027140 None:intergenic 25.0%
! GCATGAGTTAGAAATTTTCA+TGG - chr1_3:11026123-11026142 None:intergenic 30.0%
CCTGAAATTATTGGCAAAAA+AGG - chr1_3:11026189-11026208 None:intergenic 30.0%
!!! CCTTTTTTGCCAATAATTTC+AGG + chr1_3:11026186-11026205 Msa0103690:intron 30.0%
TAGGCTAAATACAACAGAAT+GGG + chr1_3:11026225-11026244 Msa0103690:intron 30.0%
! TGTTTCAAGAGCATATATAG+AGG + chr1_3:11026401-11026420 Msa0103690:intron 30.0%
! GTGTTGAAATTTGAAATAGG+AGG + chr1_3:11026438-11026457 Msa0103690:intron 30.0%
TGTTGAATATAGGACTGTTT+CGG - chr1_3:11026603-11026622 None:intergenic 30.0%
AAACAGTCCTATATTCAACA+AGG + chr1_3:11026603-11026622 Msa0103690:CDS 30.0%
!!! GTTGTAAAATCTGGTTTTGT+TGG - chr1_3:11027074-11027093 None:intergenic 30.0%
TACTCTGATGTTGTAAAATC+TGG - chr1_3:11027083-11027102 None:intergenic 30.0%
TTACTTGATTCACCAACATA+TGG + chr1_3:11027131-11027150 Msa0103690:CDS 30.0%
TACTTGATTCACCAACATAT+GGG + chr1_3:11027132-11027151 Msa0103690:CDS 30.0%
! GCATGAGTTAGAAATTTTCA+TGG - chr1_3:11026123-11026142 None:intergenic 30.0%
CCTGAAATTATTGGCAAAAA+AGG - chr1_3:11026189-11026208 None:intergenic 30.0%
!!! CCTTTTTTGCCAATAATTTC+AGG + chr1_3:11026186-11026205 Msa0103690:intron 30.0%
TAGGCTAAATACAACAGAAT+GGG + chr1_3:11026225-11026244 Msa0103690:intron 30.0%
! TGTTTCAAGAGCATATATAG+AGG + chr1_3:11026401-11026420 Msa0103690:intron 30.0%
! GTGTTGAAATTTGAAATAGG+AGG + chr1_3:11026438-11026457 Msa0103690:intron 30.0%
TGTTGAATATAGGACTGTTT+CGG - chr1_3:11026603-11026622 None:intergenic 30.0%
AAACAGTCCTATATTCAACA+AGG + chr1_3:11026603-11026622 Msa0103690:CDS 30.0%
!!! GTTGTAAAATCTGGTTTTGT+TGG - chr1_3:11027074-11027093 None:intergenic 30.0%
TACTCTGATGTTGTAAAATC+TGG - chr1_3:11027083-11027102 None:intergenic 30.0%
TTACTTGATTCACCAACATA+TGG + chr1_3:11027131-11027150 Msa0103690:CDS 30.0%
TACTTGATTCACCAACATAT+GGG + chr1_3:11027132-11027151 Msa0103690:CDS 30.0%
TACCGACAATTTCATTGTTG+AGG + chr1_3:11025763-11025782 Msa0103690:CDS 35.0%
GTCCTCAACAATGAAATTGT+CGG - chr1_3:11025768-11025787 None:intergenic 35.0%
CAATATCAGGAACGACATTA+GGG - chr1_3:11025937-11025956 None:intergenic 35.0%
AAATTCTGACAGCCAATATC+AGG - chr1_3:11025950-11025969 None:intergenic 35.0%
TATAATATACCGGAACACAC+AGG - chr1_3:11025997-11026016 None:intergenic 35.0%
AGGAGAAAAAACAACTAGCT+AGG + chr1_3:11026206-11026225 Msa0103690:intron 35.0%
CTAGGCTAAATACAACAGAA+TGG + chr1_3:11026224-11026243 Msa0103690:intron 35.0%
AGGCTAAATACAACAGAATG+GGG + chr1_3:11026226-11026245 Msa0103690:intron 35.0%
TGAAATAGGAGGATGCTTTA+CGG + chr1_3:11026449-11026468 Msa0103690:intron 35.0%
AAACGATTCCTCAACAACAT+TGG - chr1_3:11026491-11026510 None:intergenic 35.0%
CAAAAGATGCAACTGATATC+AGG + chr1_3:11026526-11026545 Msa0103690:CDS 35.0%
AATATAGGACTGTTTCGGTT+GGG - chr1_3:11026598-11026617 None:intergenic 35.0%
!! AAGCGTTGCATAATGTTTTC+GGG - chr1_3:11026906-11026925 None:intergenic 35.0%
!! CAAGCGTTGCATAATGTTTT+CGG - chr1_3:11026907-11026926 None:intergenic 35.0%
AAAACATTATGCAACGCTTG+TGG + chr1_3:11026907-11026926 Msa0103690:CDS 35.0%
TTGTGGTGTAAGATACAAGT+CGG + chr1_3:11026924-11026943 Msa0103690:CDS 35.0%
!!! AAATCTGGTTTTGTTGGTGT+TGG - chr1_3:11027068-11027087 None:intergenic 35.0%
TAAAATCAGGTCCCATATGT+TGG - chr1_3:11027146-11027165 None:intergenic 35.0%
! AACATATGGGACCTGATTTT+AGG + chr1_3:11027145-11027164 Msa0103690:CDS 35.0%
TACATCATCTGCCTAAAATC+AGG - chr1_3:11027159-11027178 None:intergenic 35.0%
TACCGACAATTTCATTGTTG+AGG + chr1_3:11025763-11025782 Msa0103690:CDS 35.0%
GTCCTCAACAATGAAATTGT+CGG - chr1_3:11025768-11025787 None:intergenic 35.0%
CAATATCAGGAACGACATTA+GGG - chr1_3:11025937-11025956 None:intergenic 35.0%
AAATTCTGACAGCCAATATC+AGG - chr1_3:11025950-11025969 None:intergenic 35.0%
TATAATATACCGGAACACAC+AGG - chr1_3:11025997-11026016 None:intergenic 35.0%
AGGAGAAAAAACAACTAGCT+AGG + chr1_3:11026206-11026225 Msa0103690:intron 35.0%
CTAGGCTAAATACAACAGAA+TGG + chr1_3:11026224-11026243 Msa0103690:intron 35.0%
AGGCTAAATACAACAGAATG+GGG + chr1_3:11026226-11026245 Msa0103690:intron 35.0%
TGAAATAGGAGGATGCTTTA+CGG + chr1_3:11026449-11026468 Msa0103690:intron 35.0%
AAACGATTCCTCAACAACAT+TGG - chr1_3:11026491-11026510 None:intergenic 35.0%
CAAAAGATGCAACTGATATC+AGG + chr1_3:11026526-11026545 Msa0103690:CDS 35.0%
AATATAGGACTGTTTCGGTT+GGG - chr1_3:11026598-11026617 None:intergenic 35.0%
!! AAGCGTTGCATAATGTTTTC+GGG - chr1_3:11026906-11026925 None:intergenic 35.0%
!! CAAGCGTTGCATAATGTTTT+CGG - chr1_3:11026907-11026926 None:intergenic 35.0%
AAAACATTATGCAACGCTTG+TGG + chr1_3:11026907-11026926 Msa0103690:CDS 35.0%
TTGTGGTGTAAGATACAAGT+CGG + chr1_3:11026924-11026943 Msa0103690:CDS 35.0%
!!! AAATCTGGTTTTGTTGGTGT+TGG - chr1_3:11027068-11027087 None:intergenic 35.0%
TAAAATCAGGTCCCATATGT+TGG - chr1_3:11027146-11027165 None:intergenic 35.0%
! AACATATGGGACCTGATTTT+AGG + chr1_3:11027145-11027164 Msa0103690:CDS 35.0%
TACATCATCTGCCTAAAATC+AGG - chr1_3:11027159-11027178 None:intergenic 35.0%
! GGTGGTTTGGAAAATGTTGT+TGG - chr1_3:11025723-11025742 None:intergenic 40.0%
! ATTGTCGGTAGTGTTGTTGT+CGG - chr1_3:11025753-11025772 None:intergenic 40.0%
CCAATATCAGGAACGACATT+AGG - chr1_3:11025938-11025957 None:intergenic 40.0%
CCTAATGTCGTTCCTGATAT+TGG + chr1_3:11025935-11025954 Msa0103690:CDS 40.0%
! TTTTCTGACAGCCATTTCTC+CGG + chr1_3:11025968-11025987 Msa0103690:CDS 40.0%
GAAATAGGAGGATGCTTTAC+GGG + chr1_3:11026450-11026469 Msa0103690:intron 40.0%
ATGGCTTTCCAATGTTGTTG+AGG + chr1_3:11026480-11026499 Msa0103690:CDS 40.0%
GAATATAGGACTGTTTCGGT+TGG - chr1_3:11026599-11026618 None:intergenic 40.0%
! AGTTCTGACTCAGAAGAAGA+CGG - chr1_3:11026721-11026740 None:intergenic 40.0%
AAAGACTGCTCCAAGAAGAA+AGG + chr1_3:11026792-11026811 Msa0103690:CDS 40.0%
!! CATAATGTTTTCGGGCCATT+AGG - chr1_3:11026898-11026917 None:intergenic 40.0%
TGTGGTGTAAGATACAAGTC+GGG + chr1_3:11026925-11026944 Msa0103690:CDS 40.0%
GTTTGGTCAGCACAAATGTA+GGG - chr1_3:11026984-11027003 None:intergenic 40.0%
TGTTTGGTCAGCACAAATGT+AGG - chr1_3:11026985-11027004 None:intergenic 40.0%
!! ATCGTAAAGTGTTGGAGCTA+CGG + chr1_3:11027016-11027035 Msa0103690:CDS 40.0%
! GGTGGTTTGGAAAATGTTGT+TGG - chr1_3:11025723-11025742 None:intergenic 40.0%
! ATTGTCGGTAGTGTTGTTGT+CGG - chr1_3:11025753-11025772 None:intergenic 40.0%
CCAATATCAGGAACGACATT+AGG - chr1_3:11025938-11025957 None:intergenic 40.0%
CCTAATGTCGTTCCTGATAT+TGG + chr1_3:11025935-11025954 Msa0103690:CDS 40.0%
! TTTTCTGACAGCCATTTCTC+CGG + chr1_3:11025968-11025987 Msa0103690:CDS 40.0%
GAAATAGGAGGATGCTTTAC+GGG + chr1_3:11026450-11026469 Msa0103690:intron 40.0%
ATGGCTTTCCAATGTTGTTG+AGG + chr1_3:11026480-11026499 Msa0103690:CDS 40.0%
GAATATAGGACTGTTTCGGT+TGG - chr1_3:11026599-11026618 None:intergenic 40.0%
! AGTTCTGACTCAGAAGAAGA+CGG - chr1_3:11026721-11026740 None:intergenic 40.0%
AAAGACTGCTCCAAGAAGAA+AGG + chr1_3:11026792-11026811 Msa0103690:CDS 40.0%
!! CATAATGTTTTCGGGCCATT+AGG - chr1_3:11026898-11026917 None:intergenic 40.0%
TGTGGTGTAAGATACAAGTC+GGG + chr1_3:11026925-11026944 Msa0103690:CDS 40.0%
GTTTGGTCAGCACAAATGTA+GGG - chr1_3:11026984-11027003 None:intergenic 40.0%
TGTTTGGTCAGCACAAATGT+AGG - chr1_3:11026985-11027004 None:intergenic 40.0%
!! ATCGTAAAGTGTTGGAGCTA+CGG + chr1_3:11027016-11027035 Msa0103690:CDS 40.0%
! AGTGTTGTTGTCGGAGGAAA+AGG - chr1_3:11025744-11025763 None:intergenic 45.0%
CGTCATTGTTGAGGTTAAGG+AGG - chr1_3:11025790-11025809 None:intergenic 45.0%
CGACGTCATTGTTGAGGTTA+AGG - chr1_3:11025793-11025812 None:intergenic 45.0%
!! AAGGTTGGTGTCGGAAATGA+TGG - chr1_3:11025828-11025847 None:intergenic 45.0%
AACGCTATTGACCACGGTAA+CGG - chr1_3:11025888-11025907 None:intergenic 45.0%
GTTAGCTCGTCATCATTGTC+CGG + chr1_3:11025905-11025924 Msa0103690:CDS 45.0%
TTAGCTCGTCATCATTGTCC+GGG + chr1_3:11025906-11025925 Msa0103690:CDS 45.0%
ACAGAATGGGGCACATTTCA+CGG + chr1_3:11026238-11026257 Msa0103690:intron 45.0%
CAACATTGGAAAGCCATTCC+AGG - chr1_3:11026477-11026496 None:intergenic 45.0%
!! TGAGGAATCGTTTTCAAGCG+AGG + chr1_3:11026498-11026517 Msa0103690:CDS 45.0%
GCAACTGATATCAGGCATGA+AGG + chr1_3:11026534-11026553 Msa0103690:CDS 45.0%
!!! GGAAGTTTTGGTTCCAGCTA+AGG + chr1_3:11026624-11026643 Msa0103690:CDS 45.0%
AACAGTGATGGTAGGTAAGG+CGG - chr1_3:11026758-11026777 None:intergenic 45.0%
TGGAACAGTGATGGTAGGTA+AGG - chr1_3:11026761-11026780 None:intergenic 45.0%
TACCTACCATCACTGTTCCA+AGG + chr1_3:11026761-11026780 Msa0103690:CDS 45.0%
TTCCTTGGAACAGTGATGGT+AGG - chr1_3:11026766-11026785 None:intergenic 45.0%
CCAAGAAGAAAGGACAGTGA+CGG + chr1_3:11026802-11026821 Msa0103690:CDS 45.0%
TGACAGACAAGACACCACAA+TGG + chr1_3:11026863-11026882 Msa0103690:CDS 45.0%
AAGATACAAGTCGGGTCGAT+TGG + chr1_3:11026933-11026952 Msa0103690:CDS 45.0%
CAACACTTTACGATGCGAGT+TGG - chr1_3:11027010-11027029 None:intergenic 45.0%
CAACTCGCATCGTAAAGTGT+TGG + chr1_3:11027008-11027027 Msa0103690:CDS 45.0%
! AGTGTTGTTGTCGGAGGAAA+AGG - chr1_3:11025744-11025763 None:intergenic 45.0%
CGTCATTGTTGAGGTTAAGG+AGG - chr1_3:11025790-11025809 None:intergenic 45.0%
CGACGTCATTGTTGAGGTTA+AGG - chr1_3:11025793-11025812 None:intergenic 45.0%
!! AAGGTTGGTGTCGGAAATGA+TGG - chr1_3:11025828-11025847 None:intergenic 45.0%
AACGCTATTGACCACGGTAA+CGG - chr1_3:11025888-11025907 None:intergenic 45.0%
GTTAGCTCGTCATCATTGTC+CGG + chr1_3:11025905-11025924 Msa0103690:CDS 45.0%
TTAGCTCGTCATCATTGTCC+GGG + chr1_3:11025906-11025925 Msa0103690:CDS 45.0%
ACAGAATGGGGCACATTTCA+CGG + chr1_3:11026238-11026257 Msa0103690:intron 45.0%
CAACATTGGAAAGCCATTCC+AGG - chr1_3:11026477-11026496 None:intergenic 45.0%
!! TGAGGAATCGTTTTCAAGCG+AGG + chr1_3:11026498-11026517 Msa0103690:CDS 45.0%
GCAACTGATATCAGGCATGA+AGG + chr1_3:11026534-11026553 Msa0103690:CDS 45.0%
!!! GGAAGTTTTGGTTCCAGCTA+AGG + chr1_3:11026624-11026643 Msa0103690:CDS 45.0%
AACAGTGATGGTAGGTAAGG+CGG - chr1_3:11026758-11026777 None:intergenic 45.0%
TGGAACAGTGATGGTAGGTA+AGG - chr1_3:11026761-11026780 None:intergenic 45.0%
TACCTACCATCACTGTTCCA+AGG + chr1_3:11026761-11026780 Msa0103690:CDS 45.0%
TTCCTTGGAACAGTGATGGT+AGG - chr1_3:11026766-11026785 None:intergenic 45.0%
CCAAGAAGAAAGGACAGTGA+CGG + chr1_3:11026802-11026821 Msa0103690:CDS 45.0%
TGACAGACAAGACACCACAA+TGG + chr1_3:11026863-11026882 Msa0103690:CDS 45.0%
AAGATACAAGTCGGGTCGAT+TGG + chr1_3:11026933-11026952 Msa0103690:CDS 45.0%
CAACACTTTACGATGCGAGT+TGG - chr1_3:11027010-11027029 None:intergenic 45.0%
CAACTCGCATCGTAAAGTGT+TGG + chr1_3:11027008-11027027 Msa0103690:CDS 45.0%
TGTCGGAGGAAAAGGTGGTT+TGG - chr1_3:11025736-11025755 None:intergenic 50.0%
GTTGTTGTCGGAGGAAAAGG+TGG - chr1_3:11025741-11025760 None:intergenic 50.0%
TTCCGACACCAACCTTGACT+CGG + chr1_3:11025832-11025851 Msa0103690:CDS 50.0%
CGAGCTAACGCTATTGACCA+CGG - chr1_3:11025894-11025913 None:intergenic 50.0%
ATGCTTTACGGGACCTGGAA+TGG + chr1_3:11026461-11026480 Msa0103690:CDS 50.0%
AGGACTGTTTCGGTTGGGTT+GGG - chr1_3:11026593-11026612 None:intergenic 50.0%
TAGGACTGTTTCGGTTGGGT+TGG - chr1_3:11026594-11026613 None:intergenic 50.0%
ACAGTGATGGTAGGTAAGGC+GGG - chr1_3:11026757-11026776 None:intergenic 50.0%
CTGCTTCCTTGGAACAGTGA+TGG - chr1_3:11026770-11026789 None:intergenic 50.0%
CATCACTGTTCCAAGGAAGC+AGG + chr1_3:11026768-11026787 Msa0103690:CDS 50.0%
CCGTCACTGTCCTTTCTTCT+TGG - chr1_3:11026805-11026824 None:intergenic 50.0%
AGAAGAAAGGACAGTGACGG+AGG + chr1_3:11026805-11026824 Msa0103690:CDS 50.0%
! GAAGAAAGGACAGTGACGGA+GGG + chr1_3:11026806-11026825 Msa0103690:CDS 50.0%
AAGACACCACAATGGCGAAC+CGG + chr1_3:11026871-11026890 Msa0103690:CDS 50.0%
! GTCGATTGGTGCCTGAATAC+AGG + chr1_3:11026947-11026966 Msa0103690:CDS 50.0%
!! ACAAATGTAGGGCTAGCTGC+AGG - chr1_3:11026973-11026992 None:intergenic 50.0%
! ACGATGCGAGTTGGAGTGTT+TGG - chr1_3:11027001-11027020 None:intergenic 50.0%
!! GTAAAGTGTTGGAGCTACGG+AGG + chr1_3:11027019-11027038 Msa0103690:CDS 50.0%
GGAGGCAGAAGGAAATGTTG+CGG + chr1_3:11027037-11027056 Msa0103690:CDS 50.0%
GAGGCAGAAGGAAATGTTGC+GGG + chr1_3:11027038-11027057 Msa0103690:CDS 50.0%
TGTCGGAGGAAAAGGTGGTT+TGG - chr1_3:11025736-11025755 None:intergenic 50.0%
GTTGTTGTCGGAGGAAAAGG+TGG - chr1_3:11025741-11025760 None:intergenic 50.0%
TTCCGACACCAACCTTGACT+CGG + chr1_3:11025832-11025851 Msa0103690:CDS 50.0%
CGAGCTAACGCTATTGACCA+CGG - chr1_3:11025894-11025913 None:intergenic 50.0%
ATGCTTTACGGGACCTGGAA+TGG + chr1_3:11026461-11026480 Msa0103690:CDS 50.0%
AGGACTGTTTCGGTTGGGTT+GGG - chr1_3:11026593-11026612 None:intergenic 50.0%
TAGGACTGTTTCGGTTGGGT+TGG - chr1_3:11026594-11026613 None:intergenic 50.0%
ACAGTGATGGTAGGTAAGGC+GGG - chr1_3:11026757-11026776 None:intergenic 50.0%
CTGCTTCCTTGGAACAGTGA+TGG - chr1_3:11026770-11026789 None:intergenic 50.0%
CATCACTGTTCCAAGGAAGC+AGG + chr1_3:11026768-11026787 Msa0103690:CDS 50.0%
CCGTCACTGTCCTTTCTTCT+TGG - chr1_3:11026805-11026824 None:intergenic 50.0%
AGAAGAAAGGACAGTGACGG+AGG + chr1_3:11026805-11026824 Msa0103690:CDS 50.0%
! GAAGAAAGGACAGTGACGGA+GGG + chr1_3:11026806-11026825 Msa0103690:CDS 50.0%
AAGACACCACAATGGCGAAC+CGG + chr1_3:11026871-11026890 Msa0103690:CDS 50.0%
! GTCGATTGGTGCCTGAATAC+AGG + chr1_3:11026947-11026966 Msa0103690:CDS 50.0%
!! ACAAATGTAGGGCTAGCTGC+AGG - chr1_3:11026973-11026992 None:intergenic 50.0%
! ACGATGCGAGTTGGAGTGTT+TGG - chr1_3:11027001-11027020 None:intergenic 50.0%
!! GTAAAGTGTTGGAGCTACGG+AGG + chr1_3:11027019-11027038 Msa0103690:CDS 50.0%
GGAGGCAGAAGGAAATGTTG+CGG + chr1_3:11027037-11027056 Msa0103690:CDS 50.0%
GAGGCAGAAGGAAATGTTGC+GGG + chr1_3:11027038-11027057 Msa0103690:CDS 50.0%
! GTCGGTAGTGTTGTTGTCGG+AGG - chr1_3:11025750-11025769 None:intergenic 55.0%
CGTCGTCGACGTCATTGTTG+AGG - chr1_3:11025799-11025818 None:intergenic 55.0%
AGTTGACTGTGGCCGAGTCA+AGG - chr1_3:11025847-11025866 None:intergenic 55.0%
!! AGAGGCGGTTGAGTTGACTG+TGG - chr1_3:11025858-11025877 None:intergenic 55.0%
! ATTGACCACGGTAACGGTGG+AGG - chr1_3:11025882-11025901 None:intergenic 55.0%
! GCTATTGACCACGGTAACGG+TGG - chr1_3:11025885-11025904 None:intergenic 55.0%
AACGACATTAGGGTCGCACC+CGG - chr1_3:11025927-11025946 None:intergenic 55.0%
CACACAGGTCTCCGGAGAAA+TGG - chr1_3:11025982-11026001 None:intergenic 55.0%
TACCGGAACACACAGGTCTC+CGG - chr1_3:11025990-11026009 None:intergenic 55.0%
! AGGCATGAAGGTGCGAAACC+AGG + chr1_3:11026546-11026565 Msa0103690:CDS 55.0%
!! TTGGGTTGGGAAAGCTCACG+GGG - chr1_3:11026580-11026599 None:intergenic 55.0%
!! GTTGGGTTGGGAAAGCTCAC+GGG - chr1_3:11026581-11026600 None:intergenic 55.0%
!! GGTTGGGTTGGGAAAGCTCA+CGG - chr1_3:11026582-11026601 None:intergenic 55.0%
AGTGATGGTAGGTAAGGCGG+GGG - chr1_3:11026755-11026774 None:intergenic 55.0%
CAGTGATGGTAGGTAAGGCG+GGG - chr1_3:11026756-11026775 None:intergenic 55.0%
GCAGTCTTTGCCTGCTTCCT+TGG - chr1_3:11026781-11026800 None:intergenic 55.0%
AGACACCACAATGGCGAACC+GGG + chr1_3:11026872-11026891 Msa0103690:CDS 55.0%
!! TGTTTTCGGGCCATTAGGCC+CGG - chr1_3:11026893-11026912 None:intergenic 55.0%
CTAGCTGCAGGCCTGTATTC+AGG - chr1_3:11026961-11026980 None:intergenic 55.0%
! GTCGGTAGTGTTGTTGTCGG+AGG - chr1_3:11025750-11025769 None:intergenic 55.0%
CGTCGTCGACGTCATTGTTG+AGG - chr1_3:11025799-11025818 None:intergenic 55.0%
AGTTGACTGTGGCCGAGTCA+AGG - chr1_3:11025847-11025866 None:intergenic 55.0%
!! AGAGGCGGTTGAGTTGACTG+TGG - chr1_3:11025858-11025877 None:intergenic 55.0%
! ATTGACCACGGTAACGGTGG+AGG - chr1_3:11025882-11025901 None:intergenic 55.0%
! GCTATTGACCACGGTAACGG+TGG - chr1_3:11025885-11025904 None:intergenic 55.0%
AACGACATTAGGGTCGCACC+CGG - chr1_3:11025927-11025946 None:intergenic 55.0%
CACACAGGTCTCCGGAGAAA+TGG - chr1_3:11025982-11026001 None:intergenic 55.0%
TACCGGAACACACAGGTCTC+CGG - chr1_3:11025990-11026009 None:intergenic 55.0%
! AGGCATGAAGGTGCGAAACC+AGG + chr1_3:11026546-11026565 Msa0103690:CDS 55.0%
!! TTGGGTTGGGAAAGCTCACG+GGG - chr1_3:11026580-11026599 None:intergenic 55.0%
!! GTTGGGTTGGGAAAGCTCAC+GGG - chr1_3:11026581-11026600 None:intergenic 55.0%
!! GGTTGGGTTGGGAAAGCTCA+CGG - chr1_3:11026582-11026601 None:intergenic 55.0%
AGTGATGGTAGGTAAGGCGG+GGG - chr1_3:11026755-11026774 None:intergenic 55.0%
CAGTGATGGTAGGTAAGGCG+GGG - chr1_3:11026756-11026775 None:intergenic 55.0%
GCAGTCTTTGCCTGCTTCCT+TGG - chr1_3:11026781-11026800 None:intergenic 55.0%
AGACACCACAATGGCGAACC+GGG + chr1_3:11026872-11026891 Msa0103690:CDS 55.0%
!! TGTTTTCGGGCCATTAGGCC+CGG - chr1_3:11026893-11026912 None:intergenic 55.0%
CTAGCTGCAGGCCTGTATTC+AGG - chr1_3:11026961-11026980 None:intergenic 55.0%
!! GGCCGAGTCAAGGTTGGTGT+CGG - chr1_3:11025837-11025856 None:intergenic 60.0%
GACTGTGGCCGAGTCAAGGT+TGG - chr1_3:11025843-11025862 None:intergenic 60.0%
! GGTAACGGTGGAGGAAGAGG+CGG - chr1_3:11025873-11025892 None:intergenic 60.0%
! CACGGTAACGGTGGAGGAAG+AGG - chr1_3:11025876-11025895 None:intergenic 60.0%
CTCTTCCTCCACCGTTACCG+TGG + chr1_3:11025874-11025893 Msa0103690:CDS 60.0%
CTCCGGAGACCTGTGTGTTC+CGG + chr1_3:11025985-11026004 Msa0103690:CDS 60.0%
GGAGGATGCTTTACGGGACC+TGG + chr1_3:11026456-11026475 Msa0103690:intron 60.0%
CTCTTGCTACGGGCCTTAGC+TGG - chr1_3:11026640-11026659 None:intergenic 60.0%
CAGCTAAGGCCCGTAGCAAG+AGG + chr1_3:11026638-11026657 Msa0103690:CDS 60.0%
CCCACGAGTCCTCTTGCTAC+GGG - chr1_3:11026650-11026669 None:intergenic 60.0%
CCCGTAGCAAGAGGACTCGT+GGG + chr1_3:11026647-11026666 Msa0103690:CDS 60.0%
GCCCACGAGTCCTCTTGCTA+CGG - chr1_3:11026651-11026670 None:intergenic 60.0%
ACGTGAGCTCCAGTCGCAAG+GGG - chr1_3:11026674-11026693 None:intergenic 60.0%
GACGTGAGCTCCAGTCGCAA+GGG - chr1_3:11026675-11026694 None:intergenic 60.0%
AGACGTGAGCTCCAGTCGCA+AGG - chr1_3:11026676-11026695 None:intergenic 60.0%
ATGGTAGGTAAGGCGGGGGT+AGG - chr1_3:11026751-11026770 None:intergenic 60.0%
! AAGGACAGTGACGGAGGGTC+AGG + chr1_3:11026811-11026830 Msa0103690:CDS 60.0%
GAGGGTCAGGTGGAGATGGT+CGG + chr1_3:11026824-11026843 Msa0103690:CDS 60.0%
! TTAGGCCCGGTTCGCCATTG+TGG - chr1_3:11026880-11026899 None:intergenic 60.0%
CAATGGCGAACCGGGCCTAA+TGG + chr1_3:11026880-11026899 Msa0103690:CDS 60.0%
GTTGGAGCTACGGAGGCAGA+AGG + chr1_3:11027026-11027045 Msa0103690:CDS 60.0%
!! GGCCGAGTCAAGGTTGGTGT+CGG - chr1_3:11025837-11025856 None:intergenic 60.0%
GACTGTGGCCGAGTCAAGGT+TGG - chr1_3:11025843-11025862 None:intergenic 60.0%
! GGTAACGGTGGAGGAAGAGG+CGG - chr1_3:11025873-11025892 None:intergenic 60.0%
! CACGGTAACGGTGGAGGAAG+AGG - chr1_3:11025876-11025895 None:intergenic 60.0%
CTCTTCCTCCACCGTTACCG+TGG + chr1_3:11025874-11025893 Msa0103690:CDS 60.0%
CTCCGGAGACCTGTGTGTTC+CGG + chr1_3:11025985-11026004 Msa0103690:CDS 60.0%
GGAGGATGCTTTACGGGACC+TGG + chr1_3:11026456-11026475 Msa0103690:intron 60.0%
CTCTTGCTACGGGCCTTAGC+TGG - chr1_3:11026640-11026659 None:intergenic 60.0%
CAGCTAAGGCCCGTAGCAAG+AGG + chr1_3:11026638-11026657 Msa0103690:CDS 60.0%
CCCACGAGTCCTCTTGCTAC+GGG - chr1_3:11026650-11026669 None:intergenic 60.0%
CCCGTAGCAAGAGGACTCGT+GGG + chr1_3:11026647-11026666 Msa0103690:CDS 60.0%
GCCCACGAGTCCTCTTGCTA+CGG - chr1_3:11026651-11026670 None:intergenic 60.0%
ACGTGAGCTCCAGTCGCAAG+GGG - chr1_3:11026674-11026693 None:intergenic 60.0%
GACGTGAGCTCCAGTCGCAA+GGG - chr1_3:11026675-11026694 None:intergenic 60.0%
AGACGTGAGCTCCAGTCGCA+AGG - chr1_3:11026676-11026695 None:intergenic 60.0%
ATGGTAGGTAAGGCGGGGGT+AGG - chr1_3:11026751-11026770 None:intergenic 60.0%
! AAGGACAGTGACGGAGGGTC+AGG + chr1_3:11026811-11026830 Msa0103690:CDS 60.0%
GAGGGTCAGGTGGAGATGGT+CGG + chr1_3:11026824-11026843 Msa0103690:CDS 60.0%
! TTAGGCCCGGTTCGCCATTG+TGG - chr1_3:11026880-11026899 None:intergenic 60.0%
CAATGGCGAACCGGGCCTAA+TGG + chr1_3:11026880-11026899 Msa0103690:CDS 60.0%
GTTGGAGCTACGGAGGCAGA+AGG + chr1_3:11027026-11027045 Msa0103690:CDS 60.0%
GCTCACGGGGTTCTTCGTCC+TGG - chr1_3:11026567-11026586 None:intergenic 65.0%
GCCCGTAGCAAGAGGACTCG+TGG + chr1_3:11026646-11026665 Msa0103690:CDS 65.0%
CGTGAGCTCCAGTCGCAAGG+GGG - chr1_3:11026673-11026692 None:intergenic 65.0%
! GACAGTGACGGAGGGTCAGG+TGG + chr1_3:11026814-11026833 Msa0103690:CDS 65.0%
GACGGAGGGTCAGGTGGAGA+TGG + chr1_3:11026820-11026839 Msa0103690:CDS 65.0%
GGTCAGGTGGAGATGGTCGG+AGG + chr1_3:11026827-11026846 Msa0103690:CDS 65.0%
GCTCACGGGGTTCTTCGTCC+TGG - chr1_3:11026567-11026586 None:intergenic 65.0%
GCCCGTAGCAAGAGGACTCG+TGG + chr1_3:11026646-11026665 Msa0103690:CDS 65.0%
CGTGAGCTCCAGTCGCAAGG+GGG - chr1_3:11026673-11026692 None:intergenic 65.0%
! GACAGTGACGGAGGGTCAGG+TGG + chr1_3:11026814-11026833 Msa0103690:CDS 65.0%
GACGGAGGGTCAGGTGGAGA+TGG + chr1_3:11026820-11026839 Msa0103690:CDS 65.0%
GGTCAGGTGGAGATGGTCGG+AGG + chr1_3:11026827-11026846 Msa0103690:CDS 65.0%
CTCGTGGGCCCCCTTGCGAC+TGG + chr1_3:11026662-11026681 Msa0103690:CDS 75.0%
CTCGTGGGCCCCCTTGCGAC+TGG + chr1_3:11026662-11026681 Msa0103690:CDS 75.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 11025707 11027179 11025707 ID=Msa0103690;Name=Msa0103690
chr1_3 mRNA 11025707 11027179 11025707 ID=Msa0103690-mRNA-1;Parent=Msa0103690;Name=Msa0103690-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0|0|1|1|1|2|0|340
chr1_3 exon 11025707 11026006 11025707 ID=Msa0103690-mRNA-1:exon:4514;Parent=Msa0103690-mRNA-1
chr1_3 exon 11026457 11027179 11026457 ID=Msa0103690-mRNA-1:exon:4515;Parent=Msa0103690-mRNA-1
chr1_3 CDS 11025707 11026006 11025707 ID=Msa0103690-mRNA-1:cds;Parent=Msa0103690-mRNA-1
chr1_3 CDS 11026457 11027179 11026457 ID=Msa0103690-mRNA-1:cds;Parent=Msa0103690-mRNA-1
Gene Sequence

>Msa0103690

ATGGAAGGCACGACCAACAACATTTTCCAAACCACCTTTTCCTCCGACAACAACACTACCGACAATTTCATTGTTGAGGACCTCCTTAACCTCAACAATGACGTCGACGACGACGCTACCATCATTTCCGACACCAACCTTGACTCGGCCACAGTCAACTCAACCGCCTCTTCCTCCACCGTTACCGTGGTCAATAGCGTTAGCTCGTCATCATTGTCCGGGTGCGACCCTAATGTCGTTCCTGATATTGGCTGTCAGAATTTTTCTGACAGCCATTTCTCCGGAGACCTGTGTGTTCCGGAGGATGCTTTACGGGACCTGGAATGGCTTTCCAATGTTGTTGAGGAATCGTTTTCAAGCGAGGATCTTCAAAAGATGCAACTGATATCAGGCATGAAGGTGCGAAACCAGGACGAAGAACCCCGTGAGCTTTCCCAACCCAACCGAAACAGTCCTATATTCAACAAGGAAGTTTTGGTTCCAGCTAAGGCCCGTAGCAAGAGGACTCGTGGGCCCCCTTGCGACTGGAGCTCACGTCTTCTTGTTTTGTCTCAAACAACACCGTCTTCTTCTGAGTCAGAACTTCTTATTCCTACCCCCGCCTTACCTACCATCACTGTTCCAAGGAAGCAGGCAAAGACTGCTCCAAGAAGAAAGGACAGTGACGGAGGGTCAGGTGGAGATGGTCGGAGGTGTCTGCATTGCATGACAGACAAGACACCACAATGGCGAACCGGGCCTAATGGCCCGAAAACATTATGCAACGCTTGTGGTGTAAGATACAAGTCGGGTCGATTGGTGCCTGAATACAGGCCTGCAGCTAGCCCTACATTTGTGCTGACCAAACACTCCAACTCGCATCGTAAAGTGTTGGAGCTACGGAGGCAGAAGGAAATGTTGCGGGCACACCAACACCAACAAAACCAGATTTTACAACATCAGAGTATGATGTTTGATATGTCCAACAATGATGATTACTTGATTCACCAACATATGGGACCTGATTTTAGGCAGATGATGTAG
Protein sequence

>Msa0103690

MEGTTNNIFQTTFSSDNNTTDNFIVEDLLNLNNDVDDDATIISDTNLDSATVNSTASSSTVTVVNSVSSSSLSGCDPNVVPDIGCQNFSDSHFSGDLCVPEDALRDLEWLSNVVEESFSSEDLQKMQLISGMKVRNQDEEPRELSQPNRNSPIFNKEVLVPAKARSKRTRGPPCDWSSRLLVLSQTTPSSSESELLIPTPALPTITVPRKQAKTAPRRKDSDGGSGGDGRRCLHCMTDKTPQWRTGPNGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMLRAHQHQQNQILQHQSMMFDMSNNDDYLIHQHMGPDFRQMM*