AlfalfaGEDB | Msa0103890

M. sativa cultivar zhongmu-4 / Msa0103890

KEGG: -
GO: -
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0103890	XP_013466271.1	92.740	551	40	0	25	575	25	575	0.0	1074

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0103890	sp\|P93604\|LRK10_WHEAT	49.582	359	169	6	199	550	277	630	5.09e-121	374

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0103890	A0A072VEV2	92.740	551	40	0	25	575	25	575	0.0	1074

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0103890	MtrunA17_Chr1g0157871	92.740	551	40	0	25	575	25	575	1074
Msa0103890	MtrunA17_Chr1g0157941	78.910	569	105	5	13	575	13	572	911
Msa0103890	MtrunA17_Chr1g0158391	65.464	582	183	12	1	575	1	571	756
Msa0103890	MtrunA17_Chr1g0158711	67.380	561	168	9	23	575	21	574	755
Msa0103890	MtrunA17_Chr3g0088341	63.322	608	167	12	10	575	1	594	721
Msa0103890	MtrunA17_Chr6g0467681	64.757	576	169	13	5	565	10	566	720
Msa0103890	MtrunA17_Chr1g0158471	62.264	583	185	10	7	565	9	580	715
Msa0103890	MtrunA17_Chr6g0467661	64.410	576	171	13	5	565	10	566	715
Msa0103890	MtrunA17_Chr1g0158511	62.478	581	188	8	7	565	9	581	712
Msa0103890	MtrunA17_Chr6g0467641	72.055	433	109	5	137	565	71	495	640

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0103890	AT1G66910.2	43.734	391	197	7	172	546	248	631	9.29e-101	319
Msa0103890	AT1G70250.1	49.835	303	145	3	250	547	448	748	3.58e-100	322
Msa0103890	AT1G66910.1	46.724	351	171	6	205	546	291	634	4.15e-100	318
Msa0103890	AT1G66920.1	45.938	357	176	7	201	546	234	584	2.13e-99	314
Msa0103890	AT1G66920.2	46.045	354	174	7	204	546	245	592	5.30e-99	313
Msa0103890	AT5G38280.1	50.492	305	139	4	250	547	320	619	9.35e-99	314
Msa0103890	AT5G39020.1	45.556	360	182	5	190	546	432	780	1.48e-98	318
Msa0103890	AT5G38280.2	50.492	305	139	4	250	547	320	619	1.49e-98	314
Msa0103890	AT5G38240.3	46.910	356	171	7	196	547	211	552	2.33e-98	311
Msa0103890	AT1G67000.1	43.750	400	196	10	183	559	476	869	3.39e-98	318

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Find 99 sgRNAs with CRISPR-Local

Find 270 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCTCCCTCTTCATCAAT+TGG	0.331743	1_3:-11391356	None:intergenic
AAATTAGAGTAAAGATATAA+TGG	0.412645	1_3:+11391653	Msa0103890:three_prime_UTR
AAATTTGCAGGAGCAATTGT+TGG	0.492513	1_3:+11390474	Msa0103890:intron
AACTAGCAATTGTCGGACTT+TGG	0.435428	1_3:+11391393	Msa0103890:CDS
AAGATGCTTAGTAATACAGA+GGG	0.659266	1_3:+11390738	Msa0103890:CDS
AAGCTAGGTGAAGGAGCTCA+TGG	0.558355	1_3:+11390669	Msa0103890:CDS
AAGGAAAACATCCTTGTTGT+CGG	0.507896	1_3:-11390916	None:intergenic
AAGTCTGATATATACAGCTA+CGG	0.614034	1_3:+11391206	Msa0103890:CDS
AATACTAAAACAACTACTAG+TGG	0.604465	1_3:+11391263	Msa0103890:CDS
AATCTCCCTCTTCATCAATT+GGG	0.469668	1_3:-11391355	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTATCAGTAAACCTTGTAAA+TGG	+	chr1_3:11389824-11389843	Msa0103890:CDS	30.0%
TATTGTTCTGACCATTTACA+AGG	-	chr1_3:11389838-11389857	None:intergenic	30.0%
ATATCAAAACGTGCTAATAC+TGG	-	chr1_3:11390259-11390278	None:intergenic	30.0%
TGCAGATATCAAGAGAATTA+CGG	+	chr1_3:11390632-11390651	Msa0103890:CDS	30.0%
AAGATGCTTAGTAATACAGA+GGG	+	chr1_3:11390738-11390757	Msa0103890:CDS	30.0%
AGAGAGTTCATAAATGAAGT+GGG	+	chr1_3:11390768-11390787	Msa0103890:CDS	30.0%
ATAAATGAAGTGGGAACTAT+GGG	+	chr1_3:11390777-11390796	Msa0103890:CDS	30.0%
TTATTGCAACAAATTGCTCT+AGG	+	chr1_3:11390948-11390967	Msa0103890:CDS	30.0%
ATTCCAAAAATATCGGACTT+CGG	+	chr1_3:11391068-11391087	Msa0103890:CDS	30.0%
AAGTTTCGAGAAAAAACTTC+AGG	-	chr1_3:11391170-11391189	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	11389775	11391743	11389775	ID=Msa0103890;Name=Msa0103890
chr1_3	mRNA	11389775	11391743	11389775	ID=Msa0103890-mRNA-1;Parent=Msa0103890;Name=Msa0103890-mRNA-1;_AED=0.00;_eAED=0.00;_QI=16\|1\|1\|1\|1\|1\|2\|142\|575
chr1_3	exon	11389775	11390400	11389775	ID=Msa0103890-mRNA-1:exon:4643;Parent=Msa0103890-mRNA-1
chr1_3	exon	11390484	11391743	11390484	ID=Msa0103890-mRNA-1:exon:4644;Parent=Msa0103890-mRNA-1
chr1_3	five_prime_UTR	11389775	11389790	11389775	ID=Msa0103890-mRNA-1:five_prime_utr;Parent=Msa0103890-mRNA-1
chr1_3	CDS	11389791	11390400	11389791	ID=Msa0103890-mRNA-1:cds;Parent=Msa0103890-mRNA-1
chr1_3	CDS	11390484	11391601	11390484	ID=Msa0103890-mRNA-1:cds;Parent=Msa0103890-mRNA-1
chr1_3	three_prime_UTR	11391602	11391743	11391602	ID=Msa0103890-mRNA-1:three_prime_utr;Parent=Msa0103890-mRNA-1

Gene Sequence

>Msa0103890

ATGTCACTCACAATAATATCATTGCTACTGCTGCTATCAGTAAACCTTGTAAATGGTCAGAACAATAATAACTCATCCGTCAAATGCCCCTTCCGTTTATCTTGTTCAAGTAACAAGATTCAATACCTTGAGTTTCCCTCAAAACCAGTATCAAAAAAATTCCTTGTCAGAAACATAGATTGCGAATTGAAACACTTAGTCTTATCTGACCCACAAAACTGTCTTCCTAGGTTCTTTTTAACAAACAATTTTTCATTATTTTATCCTTTTCAATCAGATTATTCCAACGGCAACGTTACTTTTTTTAATTGCTCTTCAGTTGGAGTGCACCATCTGAAAAGCTGGGACCAAAGAAACCCTGGTGTACAAGATATGTTGTCTTGTCCGATTTATGCTACCGATTCTACTGATAGTGTCGTCAAATTGGACTTATTAAGCTGCACAAGAATGTTTGATAAAGTTTTGCCAGTATTAGCACGTTTTGATATAATGTATAACACTATCAGCTTGAGTTGGTCCGAAACAACATTTCCCAGTCAATGTTTAGAATATGATCAGCTACACCACAAATCAAAGAAGAAACTCACATCCATTATTTTAGTAACAACAGGAGCAATTGTTGGTTCAACTATGCTGGTTGTTTTGATTGGTGTGTTGATTCGAGTTTATGTCCATTTTAGGACGAAAGGGGAAGATCAAACGAGACTTGAAAACTTTTTGAAGGATTACGAAGCGTCAAAGCCAACGAGATTTTCTTATGCAGATATCAAGAGAATTACGGATCAATTCAAGGAAAAGCTAGGTGAAGGAGCTCATGGAGCTGTCTACAAAGGTAAATTATCGAGTCAAATTCTTGTTGCTGTGAAGATGCTTAGTAATACAGAGGGAGATGGGAGAGAGTTCATAAATGAAGTGGGAACTATGGGAAAAATTCATCATGTTAATGTTGTTCGGTTGCTTGGCTTTTGTGCTGATGGATTTTATCGTGCTTTGGTTTATGACTTTTTCCCAAATGGATCATTGCAAAATTTCATCTCTTCACCCGACAACAAGGATGTTTTCCTTGGTTGGGACTTATTGCAACAAATTGCTCTAGGCATTGCCAATGGGATTGAGTATCTTCACCAAGGTTGTGATCATAGAATTCTTCACTTTGATATCAATCCTCACAATGTCTTGTTAGATGACAATTTCATTCCAAAAATATCGGACTTCGGTTTAGCTAAGCTGTGCTCCAAAAATCAAAGTACAGTATCGATGACAGCAGCCAGGGGAACTTTAGGGTACATGGCACCTGAAGTTTTTTCTCGAAACTTTGGGAACGTCTCTTATAAGTCTGATATATACAGCTACGGTATGTTGTTGCTAGAAATGGTTGGAGGAAGAAAGAATACTAAAACAACTACTAGTGGCGAAGAAAATTTCCAAGTTCTGTATCCAGATTGGATCCATGGTTTACTTGAAGGTGGAGACATATATATCCCAATTGATGAAGAGGGAGATTTTAGAATTGCAAAGAAACTAGCAATTGTCGGACTTTGGTGCATTCAATGGCACTCTGTGCATCGACCGTCAATGAAAACTGTGATTCAGATGCTACAAGGAGAGGGAGACAAGTTACAAGTTCCCAACAATCCTTTCAATGCTTCATCATCAAGTAATAGAACTGTAAATACTGTTCCAGGATGTTTGAATGTAGAACTAGATGTCATTCAAGAATTAGACTAG

Protein sequence

>Msa0103890

MSLTIISLLLLLSVNLVNGQNNNNSSVKCPFRLSCSSNKIQYLEFPSKPVSKKFLVRNIDCELKHLVLSDPQNCLPRFFLTNNFSLFYPFQSDYSNGNVTFFNCSSVGVHHLKSWDQRNPGVQDMLSCPIYATDSTDSVVKLDLLSCTRMFDKVLPVLARFDIMYNTISLSWSETTFPSQCLEYDQLHHKSKKKLTSIILVTTGAIVGSTMLVVLIGVLIRVYVHFRTKGEDQTRLENFLKDYEASKPTRFSYADIKRITDQFKEKLGEGAHGAVYKGKLSSQILVAVKMLSNTEGDGREFINEVGTMGKIHHVNVVRLLGFCADGFYRALVYDFFPNGSLQNFISSPDNKDVFLGWDLLQQIALGIANGIEYLHQGCDHRILHFDINPHNVLLDDNFIPKISDFGLAKLCSKNQSTVSMTAARGTLGYMAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNTKTTTSGEENFQVLYPDWIHGLLEGGDIYIPIDEEGDFRIAKKLAIVGLWCIQWHSVHRPSMKTVIQMLQGEGDKLQVPNNPFNASSSSNRTVNTVPGCLNVELDVIQELD*