Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0104130 | KEH41184.1 | 80.863 | 371 | 32 | 4 | 1 | 368 | 1 | 335 | 0.0 | 541 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0104130 | A0A072VGK8 | 80.863 | 371 | 32 | 4 | 1 | 368 | 1 | 335 | 0.0 | 541 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0104130 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0104130 | MtrunA17_Chr1g0169171 | 79.290 | 338 | 31 | 4 | 34 | 368 | 1 | 302 | 5.51e-169 | 473 |
| Msa0104130 | MtrunA17_Chr1g0169081 | 56.676 | 367 | 106 | 5 | 5 | 365 | 2 | 321 | 9.59e-125 | 362 |
| Msa0104130 | MtrunA17_Chr1g0169161 | 68.023 | 172 | 54 | 1 | 194 | 365 | 161 | 331 | 8.74e-82 | 253 |
| Msa0104130 | MtrunA17_Chr3g0125151 | 79.839 | 124 | 23 | 1 | 242 | 365 | 1 | 122 | 1.62e-69 | 214 |
| Msa0104130 | MtrunA17_Chr3g0125161 | 79.339 | 121 | 22 | 1 | 2 | 119 | 13 | 133 | 8.83e-62 | 195 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 76 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGCATTGTTAGTCATAATT+TGG | 0.199161 | 1_3:+11646505 | None:intergenic |
| ACAATAAAACATACATGTTT+TGG | 0.262336 | 1_3:+11645654 | None:intergenic |
| TGCTAAGGGTGCACGTTGTT+GGG | 0.278858 | 1_3:-11644790 | Msa0104130:CDS |
| ATTTCATCATCTTCAAGATT+TGG | 0.287026 | 1_3:+11645493 | None:intergenic |
| AGGAAGACTTTGAAGAAGTT+AGG | 0.307444 | 1_3:+11646474 | None:intergenic |
| GCATAGAAGTATGGATTTCC+TGG | 0.326303 | 1_3:+11645448 | None:intergenic |
| AGAGAGGACAAATACGTAAA+TGG | 0.331355 | 1_3:-11644928 | Msa0104130:CDS |
| CACTTCCTCTATGATCTCTT+AGG | 0.351749 | 1_3:+11646190 | None:intergenic |
| TGACAACAGACCAAACATAT+TGG | 0.391564 | 1_3:-11645416 | Msa0104130:intron |
| GATATTGGTTTAGGGAGCAT+TGG | 0.412192 | 1_3:-11645532 | Msa0104130:intron |
| AAGAACTAAACCAATATGTT+TGG | 0.413033 | 1_3:+11645406 | None:intergenic |
| ATGCTAAGGGTGCACGTTGT+TGG | 0.415650 | 1_3:-11644791 | Msa0104130:CDS |
| CTTCTTCTTCATCTACCATT+GGG | 0.424744 | 1_3:+11645809 | None:intergenic |
| ATATTGGTTTAGGGAGCATT+GGG | 0.434376 | 1_3:-11645531 | Msa0104130:intron |
| TCTTCTTCTTCATCTACCAT+TGG | 0.436364 | 1_3:+11645808 | None:intergenic |
| AGAGGATGAGGAAGAGGAAG+AGG | 0.437743 | 1_3:-11645959 | Msa0104130:CDS |
| TTCAAAACAAAGGCTGTTGA+AGG | 0.442905 | 1_3:-11646220 | Msa0104130:CDS |
| TTGCGGCAATACATGATGAT+AGG | 0.447437 | 1_3:+11644973 | None:intergenic |
| CCTTGCAGTGGCAACATACA+AGG | 0.465539 | 1_3:+11645145 | None:intergenic |
| GAAAATCAATTGAAATGCTA+AGG | 0.471162 | 1_3:-11644805 | Msa0104130:CDS |
| AATAAAGTTTGTTGCCGATA+GGG | 0.473847 | 1_3:+11646148 | None:intergenic |
| GGAAGACTTTGAAGAAGTTA+GGG | 0.478785 | 1_3:+11646475 | None:intergenic |
| GAGGAAGAGGAAGAGGAAGA+TGG | 0.482567 | 1_3:-11645952 | Msa0104130:CDS |
| CATGTCAAAGTGCGCCCTAT+CGG | 0.483624 | 1_3:-11646162 | Msa0104130:CDS |
| TACGATAGAGGATGAGGAAG+AGG | 0.486893 | 1_3:-11645965 | Msa0104130:CDS |
| TCACAGGATGTTCAAAGTAA+TGG | 0.491911 | 1_3:-11645004 | Msa0104130:intron |
| CGTTGATGAGGAGGAGGATG+AGG | 0.496617 | 1_3:-11645860 | Msa0104130:CDS |
| GGAAAATACTAATACGATAG+AGG | 0.497125 | 1_3:-11645977 | Msa0104130:CDS |
| CTCAATGTGTCAAAAGATGA+AGG | 0.502234 | 1_3:-11646013 | Msa0104130:CDS |
| GAGATCATAGAGGAAGTGAT+TGG | 0.510228 | 1_3:-11646185 | Msa0104130:CDS |
| AAAGAAGCACTCTGATAGAA+TGG | 0.512843 | 1_3:-11646448 | Msa0104130:intron |
| GACACATTGAGGATAGTTCA+AGG | 0.516055 | 1_3:+11646025 | None:intergenic |
| AGATGGTGTTGATGAGGAGG+AGG | 0.518763 | 1_3:-11645773 | Msa0104130:CDS |
| GTGTCAAAAGATGAAGGTAA+TGG | 0.520383 | 1_3:-11646007 | Msa0104130:CDS |
| TACTAATACGATAGAGGATG+AGG | 0.521923 | 1_3:-11645971 | Msa0104130:CDS |
| AAGGAATAAAAGAGTTGGCA+AGG | 0.527383 | 1_3:-11645716 | Msa0104130:CDS |
| ATCAGCTTCACAAAAGCCGT+TGG | 0.529706 | 1_3:+11646246 | None:intergenic |
| GAAGAAGTTAGGGAACTCCT+TGG | 0.540851 | 1_3:+11646485 | None:intergenic |
| GCCGAGTATTTGTGCGAGGG+TGG | 0.540995 | 1_3:-11644898 | Msa0104130:CDS |
| CGATGACGTTGATGAGGAGG+AGG | 0.543560 | 1_3:-11645866 | Msa0104130:CDS |
| CCCACCCTCGCACAAATACT+CGG | 0.548148 | 1_3:+11644897 | None:intergenic |
| TCAGCTTCACAAAAGCCGTT+GGG | 0.551363 | 1_3:+11646247 | None:intergenic |
| GCTGAAATGTATATTCAGCC+AGG | 0.552692 | 1_3:-11645466 | Msa0104130:CDS |
| TATCAGAGTGCTTCTTTGTG+AGG | 0.557625 | 1_3:+11646454 | None:intergenic |
| AAATAAAGTTTGTTGCCGAT+AGG | 0.559250 | 1_3:+11646147 | None:intergenic |
| GCTAAGGGTGCACGTTGTTG+GGG | 0.562059 | 1_3:-11644789 | Msa0104130:CDS |
| TATTTCGAAGAATGTCATCA+AGG | 0.573351 | 1_3:-11645199 | Msa0104130:CDS |
| TGTGAACTTGTGTTGCATGA+AGG | 0.573986 | 1_3:-11644827 | Msa0104130:CDS |
| CAAATACGTAAATGGAGAGA+TGG | 0.574867 | 1_3:-11644920 | Msa0104130:CDS |
| CCTTGTATGTTGCCACTGCA+AGG | 0.576526 | 1_3:-11645145 | Msa0104130:intron |
| TGTTGATGAGGAGGAGGACA+AGG | 0.580061 | 1_3:-11645767 | Msa0104130:CDS |
| AAAATCAATTGAAATGCTAA+GGG | 0.582870 | 1_3:-11644804 | Msa0104130:CDS |
| ATGGTAGAGGAAGAAGAAGA+TGG | 0.585295 | 1_3:-11645898 | Msa0104130:intron |
| ATGGTAGATGAAGAAGAAGA+TGG | 0.592976 | 1_3:-11645805 | Msa0104130:CDS |
| AGCTGATGCTTTCAAAACAA+AGG | 0.597947 | 1_3:-11646230 | Msa0104130:CDS |
| CCGAGTATTTGTGCGAGGGT+GGG | 0.600057 | 1_3:-11644897 | Msa0104130:CDS |
| AGGAATAAAAGAGTTGGCAA+GGG | 0.605563 | 1_3:-11645715 | Msa0104130:CDS |
| TCTGCTGCAGCTTATCCCAA+CGG | 0.606121 | 1_3:-11646262 | Msa0104130:intron |
| TGATATGCTTTGTAAAGCAA+AGG | 0.607441 | 1_3:+11645169 | None:intergenic |
| TTTCAATGTGTGTGAAAACA+AGG | 0.612200 | 1_3:+11646070 | None:intergenic |
| GATGAAGGTAATGGACGAGG+AGG | 0.612327 | 1_3:-11645998 | Msa0104130:CDS |
| TAACGATGACGTTGATGAGG+AGG | 0.620129 | 1_3:-11645869 | Msa0104130:CDS |
| TGATAAAGATGGTGTTGATG+AGG | 0.622743 | 1_3:-11645779 | Msa0104130:CDS |
| GAAGATGGTGATGATAAAGA+TGG | 0.623664 | 1_3:-11645790 | Msa0104130:CDS |
| ACAAAACATATTGAAAAGAG+AGG | 0.623885 | 1_3:-11644944 | Msa0104130:CDS |
| ATAACAATTATACCTTGCAG+TGG | 0.625581 | 1_3:+11645133 | None:intergenic |
| TAAAGATGGTGTTGATGAGG+AGG | 0.628754 | 1_3:-11645776 | Msa0104130:CDS |
| TTTATCCTAAGAGATCATAG+AGG | 0.632452 | 1_3:-11646195 | Msa0104130:CDS |
| AATTATGACTAACAATGCCA+AGG | 0.645414 | 1_3:-11646502 | Msa0104130:exon |
| GATGGCCGAGTATTTGTGCG+AGG | 0.647129 | 1_3:-11644902 | Msa0104130:CDS |
| AAAGATGAAGGTAATGGACG+AGG | 0.655125 | 1_3:-11646001 | Msa0104130:CDS |
| ATGGCCGAGTATTTGTGCGA+GGG | 0.660319 | 1_3:-11644901 | Msa0104130:CDS |
| CTTGCAGTGGCAACATACAA+GGG | 0.670891 | 1_3:+11645146 | None:intergenic |
| TGATAACGATGACGTTGATG+AGG | 0.693089 | 1_3:-11645872 | Msa0104130:CDS |
| TGATGATGATGATTACCCAA+TGG | 0.742110 | 1_3:-11645824 | Msa0104130:CDS |
| TGATGATGATGATTACACAA+TGG | 0.769323 | 1_3:-11645917 | Msa0104130:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAATAATGAAAGAAAAA+AGG | - | chr1_3:11645569-11645588 | Msa0104130:intron | 10.0% |
| !! | ATATAATAATGAAAGAAAAA+AGG | - | chr1_3:11645569-11645588 | Msa0104130:intron | 10.0% |
| !! | TAATGTATAATAATATTTGG+AGG | + | chr1_3:11644908-11644927 | None:intergenic | 15.0% |
| !! | TAATATAGTGATTAGAAATA+AGG | + | chr1_3:11646054-11646073 | None:intergenic | 15.0% |
| !! | TAATGTATAATAATATTTGG+AGG | + | chr1_3:11644908-11644927 | None:intergenic | 15.0% |
| !! | TAATATAGTGATTAGAAATA+AGG | + | chr1_3:11646054-11646073 | None:intergenic | 15.0% |
| !!! | AACAAACTTTATTTTGATGA+TGG | - | chr1_3:11645166-11645185 | Msa0104130:CDS | 20.0% |
| !!! | ACAATAAAACATACATGTTT+TGG | + | chr1_3:11645653-11645672 | None:intergenic | 20.0% |
| !! | ATTTACCTAATGATTGATAT+TGG | - | chr1_3:11645757-11645776 | Msa0104130:CDS | 20.0% |
| !!! | TAATGATTGATATTGGTTTA+GGG | - | chr1_3:11645764-11645783 | Msa0104130:CDS | 20.0% |
| !! | AAAATCAATTGAAATGCTAA+GGG | - | chr1_3:11646500-11646519 | Msa0104130:CDS | 20.0% |
| !!! | AACAAACTTTATTTTGATGA+TGG | - | chr1_3:11645166-11645185 | Msa0104130:CDS | 20.0% |
| !!! | ACAATAAAACATACATGTTT+TGG | + | chr1_3:11645653-11645672 | None:intergenic | 20.0% |
| !! | ATTTACCTAATGATTGATAT+TGG | - | chr1_3:11645757-11645776 | Msa0104130:CDS | 20.0% |
| !!! | TAATGATTGATATTGGTTTA+GGG | - | chr1_3:11645764-11645783 | Msa0104130:CDS | 20.0% |
| !! | AAAATCAATTGAAATGCTAA+GGG | - | chr1_3:11646500-11646519 | Msa0104130:CDS | 20.0% |
| !!! | AACTTTATTTTGATGATGGT+TGG | - | chr1_3:11645170-11645189 | Msa0104130:CDS | 25.0% |
| ! | GAAAAAAGGAATAAAAGAGT+TGG | - | chr1_3:11645583-11645602 | Msa0104130:intron | 25.0% |
| !!! | ATAAAACATACATGTTTTGG+AGG | + | chr1_3:11645650-11645669 | None:intergenic | 25.0% |
| ! | CTAAACCAATATCAATCATT+AGG | + | chr1_3:11645765-11645784 | None:intergenic | 25.0% |
| !!! | CTAATGATTGATATTGGTTT+AGG | - | chr1_3:11645763-11645782 | Msa0104130:CDS | 25.0% |
| ! | ATTTCATCATCTTCAAGATT+TGG | + | chr1_3:11645814-11645833 | None:intergenic | 25.0% |
| !!! | TATTGTTTTGCATAGAAGTA+TGG | + | chr1_3:11645868-11645887 | None:intergenic | 25.0% |
| ! | AAGAACTAAACCAATATGTT+TGG | + | chr1_3:11645901-11645920 | None:intergenic | 25.0% |
| !! | AATGACAAAAGCACAAAATT+AGG | + | chr1_3:11645936-11645955 | None:intergenic | 25.0% |
| !! | AGTAATTAGTCCATTTTCTT+AGG | - | chr1_3:11646006-11646025 | Msa0104130:CDS | 25.0% |
| ! | ACAAAACATATTGAAAAGAG+AGG | - | chr1_3:11646360-11646379 | Msa0104130:intron | 25.0% |
| ! | GAAAATCAATTGAAATGCTA+AGG | - | chr1_3:11646499-11646518 | Msa0104130:CDS | 25.0% |
| !!! | AACTTTATTTTGATGATGGT+TGG | - | chr1_3:11645170-11645189 | Msa0104130:CDS | 25.0% |
| ! | GAAAAAAGGAATAAAAGAGT+TGG | - | chr1_3:11645583-11645602 | Msa0104130:intron | 25.0% |
| !!! | ATAAAACATACATGTTTTGG+AGG | + | chr1_3:11645650-11645669 | None:intergenic | 25.0% |
| ! | CTAAACCAATATCAATCATT+AGG | + | chr1_3:11645765-11645784 | None:intergenic | 25.0% |
| !!! | CTAATGATTGATATTGGTTT+AGG | - | chr1_3:11645763-11645782 | Msa0104130:CDS | 25.0% |
| ! | ATTTCATCATCTTCAAGATT+TGG | + | chr1_3:11645814-11645833 | None:intergenic | 25.0% |
| !!! | TATTGTTTTGCATAGAAGTA+TGG | + | chr1_3:11645868-11645887 | None:intergenic | 25.0% |
| ! | AAGAACTAAACCAATATGTT+TGG | + | chr1_3:11645901-11645920 | None:intergenic | 25.0% |
| !! | AATGACAAAAGCACAAAATT+AGG | + | chr1_3:11645936-11645955 | None:intergenic | 25.0% |
| !! | AGTAATTAGTCCATTTTCTT+AGG | - | chr1_3:11646006-11646025 | Msa0104130:CDS | 25.0% |
| ! | ACAAAACATATTGAAAAGAG+AGG | - | chr1_3:11646360-11646379 | Msa0104130:intron | 25.0% |
| ! | GAAAATCAATTGAAATGCTA+AGG | - | chr1_3:11646499-11646518 | Msa0104130:CDS | 25.0% |
| TGGCATTGTTAGTCATAATT+TGG | + | chr1_3:11644802-11644821 | None:intergenic | 30.0% | |
| AATTATGACTAACAATGCCA+AGG | - | chr1_3:11644802-11644821 | Msa0104130:CDS | 30.0% | |
| TTTATCCTAAGAGATCATAG+AGG | - | chr1_3:11645109-11645128 | Msa0104130:intron | 30.0% | |
| !! | AATAAAGTTTGTTGCCGATA+GGG | + | chr1_3:11645159-11645178 | None:intergenic | 30.0% |
| !! | AAATAAAGTTTGTTGCCGAT+AGG | + | chr1_3:11645160-11645179 | None:intergenic | 30.0% |
| TTTCAATGTGTGTGAAAACA+AGG | + | chr1_3:11645237-11645256 | None:intergenic | 30.0% | |
| GGAAAATACTAATACGATAG+AGG | - | chr1_3:11645327-11645346 | Msa0104130:intron | 30.0% | |
| ! | TGATGATGATGATTACACAA+TGG | - | chr1_3:11645387-11645406 | Msa0104130:intron | 30.0% |
| TATTTCGAAGAATGTCATCA+AGG | - | chr1_3:11646105-11646124 | Msa0104130:CDS | 30.0% | |
| TGATATGCTTTGTAAAGCAA+AGG | + | chr1_3:11646138-11646157 | None:intergenic | 30.0% | |
| ATAACAATTATACCTTGCAG+TGG | + | chr1_3:11646174-11646193 | None:intergenic | 30.0% | |
| ! | ATATGTTTTGTGCTCATTTG+CGG | + | chr1_3:11646351-11646370 | None:intergenic | 30.0% |
| TGGCATTGTTAGTCATAATT+TGG | + | chr1_3:11644802-11644821 | None:intergenic | 30.0% | |
| AATTATGACTAACAATGCCA+AGG | - | chr1_3:11644802-11644821 | Msa0104130:CDS | 30.0% | |
| TTTATCCTAAGAGATCATAG+AGG | - | chr1_3:11645109-11645128 | Msa0104130:intron | 30.0% | |
| !! | AATAAAGTTTGTTGCCGATA+GGG | + | chr1_3:11645159-11645178 | None:intergenic | 30.0% |
| !! | AAATAAAGTTTGTTGCCGAT+AGG | + | chr1_3:11645160-11645179 | None:intergenic | 30.0% |
| TTTCAATGTGTGTGAAAACA+AGG | + | chr1_3:11645237-11645256 | None:intergenic | 30.0% | |
| GGAAAATACTAATACGATAG+AGG | - | chr1_3:11645327-11645346 | Msa0104130:intron | 30.0% | |
| ! | TGATGATGATGATTACACAA+TGG | - | chr1_3:11645387-11645406 | Msa0104130:intron | 30.0% |
| TATTTCGAAGAATGTCATCA+AGG | - | chr1_3:11646105-11646124 | Msa0104130:CDS | 30.0% | |
| TGATATGCTTTGTAAAGCAA+AGG | + | chr1_3:11646138-11646157 | None:intergenic | 30.0% | |
| ATAACAATTATACCTTGCAG+TGG | + | chr1_3:11646174-11646193 | None:intergenic | 30.0% | |
| ! | ATATGTTTTGTGCTCATTTG+CGG | + | chr1_3:11646351-11646370 | None:intergenic | 30.0% |
| ! | GGAAGACTTTGAAGAAGTTA+GGG | + | chr1_3:11644832-11644851 | None:intergenic | 35.0% |
| ! | AGGAAGACTTTGAAGAAGTT+AGG | + | chr1_3:11644833-11644852 | None:intergenic | 35.0% |
| !! | AAAGAAGCACTCTGATAGAA+TGG | - | chr1_3:11644856-11644875 | Msa0104130:CDS | 35.0% |
| AGCTGATGCTTTCAAAACAA+AGG | - | chr1_3:11645074-11645093 | Msa0104130:intron | 35.0% | |
| TTCAAAACAAAGGCTGTTGA+AGG | - | chr1_3:11645084-11645103 | Msa0104130:intron | 35.0% | |
| ! | CTTCATCTTTTGACACATTG+AGG | + | chr1_3:11645293-11645312 | None:intergenic | 35.0% |
| CTCAATGTGTCAAAAGATGA+AGG | - | chr1_3:11645291-11645310 | Msa0104130:intron | 35.0% | |
| GTGTCAAAAGATGAAGGTAA+TGG | - | chr1_3:11645297-11645316 | Msa0104130:intron | 35.0% | |
| TACTAATACGATAGAGGATG+AGG | - | chr1_3:11645333-11645352 | Msa0104130:intron | 35.0% | |
| TGATGATTACACAATGGTAG+AGG | - | chr1_3:11645393-11645412 | Msa0104130:intron | 35.0% | |
| ! | TGATGATGATGATTACCCAA+TGG | - | chr1_3:11645480-11645499 | Msa0104130:CDS | 35.0% |
| CTTCTTCTTCATCTACCATT+GGG | + | chr1_3:11645498-11645517 | None:intergenic | 35.0% | |
| TCTTCTTCTTCATCTACCAT+TGG | + | chr1_3:11645499-11645518 | None:intergenic | 35.0% | |
| ATGGTAGATGAAGAAGAAGA+TGG | - | chr1_3:11645499-11645518 | Msa0104130:CDS | 35.0% | |
| ! | GAAGATGGTGATGATAAAGA+TGG | - | chr1_3:11645514-11645533 | Msa0104130:CDS | 35.0% |
| !! | TGATAAAGATGGTGTTGATG+AGG | - | chr1_3:11645525-11645544 | Msa0104130:intron | 35.0% |
| AAGGAATAAAAGAGTTGGCA+AGG | - | chr1_3:11645588-11645607 | Msa0104130:intron | 35.0% | |
| AGGAATAAAAGAGTTGGCAA+GGG | - | chr1_3:11645589-11645608 | Msa0104130:intron | 35.0% | |
| !! | ATATTGGTTTAGGGAGCATT+GGG | - | chr1_3:11645773-11645792 | Msa0104130:CDS | 35.0% |
| TGACAACAGACCAAACATAT+TGG | - | chr1_3:11645888-11645907 | Msa0104130:CDS | 35.0% | |
| ACAGAAAGGATGAATACAAC+TGG | + | chr1_3:11646278-11646297 | None:intergenic | 35.0% | |
| TCACAGGATGTTCAAAGTAA+TGG | - | chr1_3:11646300-11646319 | Msa0104130:intron | 35.0% | |
| AGAGAGGACAAATACGTAAA+TGG | - | chr1_3:11646376-11646395 | Msa0104130:intron | 35.0% | |
| CAAATACGTAAATGGAGAGA+TGG | - | chr1_3:11646384-11646403 | Msa0104130:intron | 35.0% | |
| ! | GGAAGACTTTGAAGAAGTTA+GGG | + | chr1_3:11644832-11644851 | None:intergenic | 35.0% |
| ! | AGGAAGACTTTGAAGAAGTT+AGG | + | chr1_3:11644833-11644852 | None:intergenic | 35.0% |
| !! | AAAGAAGCACTCTGATAGAA+TGG | - | chr1_3:11644856-11644875 | Msa0104130:CDS | 35.0% |
| AGCTGATGCTTTCAAAACAA+AGG | - | chr1_3:11645074-11645093 | Msa0104130:intron | 35.0% | |
| TTCAAAACAAAGGCTGTTGA+AGG | - | chr1_3:11645084-11645103 | Msa0104130:intron | 35.0% | |
| ! | CTTCATCTTTTGACACATTG+AGG | + | chr1_3:11645293-11645312 | None:intergenic | 35.0% |
| CTCAATGTGTCAAAAGATGA+AGG | - | chr1_3:11645291-11645310 | Msa0104130:intron | 35.0% | |
| GTGTCAAAAGATGAAGGTAA+TGG | - | chr1_3:11645297-11645316 | Msa0104130:intron | 35.0% | |
| TACTAATACGATAGAGGATG+AGG | - | chr1_3:11645333-11645352 | Msa0104130:intron | 35.0% | |
| TGATGATTACACAATGGTAG+AGG | - | chr1_3:11645393-11645412 | Msa0104130:intron | 35.0% | |
| ! | TGATGATGATGATTACCCAA+TGG | - | chr1_3:11645480-11645499 | Msa0104130:CDS | 35.0% |
| CTTCTTCTTCATCTACCATT+GGG | + | chr1_3:11645498-11645517 | None:intergenic | 35.0% | |
| TCTTCTTCTTCATCTACCAT+TGG | + | chr1_3:11645499-11645518 | None:intergenic | 35.0% | |
| ATGGTAGATGAAGAAGAAGA+TGG | - | chr1_3:11645499-11645518 | Msa0104130:CDS | 35.0% | |
| ! | GAAGATGGTGATGATAAAGA+TGG | - | chr1_3:11645514-11645533 | Msa0104130:CDS | 35.0% |
| !! | TGATAAAGATGGTGTTGATG+AGG | - | chr1_3:11645525-11645544 | Msa0104130:intron | 35.0% |
| AAGGAATAAAAGAGTTGGCA+AGG | - | chr1_3:11645588-11645607 | Msa0104130:intron | 35.0% | |
| AGGAATAAAAGAGTTGGCAA+GGG | - | chr1_3:11645589-11645608 | Msa0104130:intron | 35.0% | |
| !! | ATATTGGTTTAGGGAGCATT+GGG | - | chr1_3:11645773-11645792 | Msa0104130:CDS | 35.0% |
| TGACAACAGACCAAACATAT+TGG | - | chr1_3:11645888-11645907 | Msa0104130:CDS | 35.0% | |
| ACAGAAAGGATGAATACAAC+TGG | + | chr1_3:11646278-11646297 | None:intergenic | 35.0% | |
| TCACAGGATGTTCAAAGTAA+TGG | - | chr1_3:11646300-11646319 | Msa0104130:intron | 35.0% | |
| AGAGAGGACAAATACGTAAA+TGG | - | chr1_3:11646376-11646395 | Msa0104130:intron | 35.0% | |
| CAAATACGTAAATGGAGAGA+TGG | - | chr1_3:11646384-11646403 | Msa0104130:intron | 35.0% | |
| ! | TATCAGAGTGCTTCTTTGTG+AGG | + | chr1_3:11644853-11644872 | None:intergenic | 40.0% |
| CACTTCCTCTATGATCTCTT+AGG | + | chr1_3:11645117-11645136 | None:intergenic | 40.0% | |
| GAGATCATAGAGGAAGTGAT+TGG | - | chr1_3:11645119-11645138 | Msa0104130:intron | 40.0% | |
| GACACATTGAGGATAGTTCA+AGG | + | chr1_3:11645282-11645301 | None:intergenic | 40.0% | |
| !! | AAAGATGAAGGTAATGGACG+AGG | - | chr1_3:11645303-11645322 | Msa0104130:intron | 40.0% |
| ATGGTAGAGGAAGAAGAAGA+TGG | - | chr1_3:11645406-11645425 | Msa0104130:intron | 40.0% | |
| ! | TGATAACGATGACGTTGATG+AGG | - | chr1_3:11645432-11645451 | Msa0104130:CDS | 40.0% |
| !! | TAAAGATGGTGTTGATGAGG+AGG | - | chr1_3:11645528-11645547 | Msa0104130:intron | 40.0% |
| !! | GATATTGGTTTAGGGAGCAT+TGG | - | chr1_3:11645772-11645791 | Msa0104130:CDS | 40.0% |
| GCTGAAATGTATATTCAGCC+AGG | - | chr1_3:11645838-11645857 | Msa0104130:CDS | 40.0% | |
| ! | GCATAGAAGTATGGATTTCC+TGG | + | chr1_3:11645859-11645878 | None:intergenic | 40.0% |
| ! | TAGTCCATTTTCTTAGGCCT+AGG | - | chr1_3:11646012-11646031 | Msa0104130:CDS | 40.0% |
| ! | AGTCCATTTTCTTAGGCCTA+GGG | - | chr1_3:11646013-11646032 | Msa0104130:CDS | 40.0% |
| TTCATCCTTTCTGTCATCAC+AGG | - | chr1_3:11646284-11646303 | Msa0104130:intron | 40.0% | |
| AACATCCTGTGATGACAGAA+AGG | + | chr1_3:11646292-11646311 | None:intergenic | 40.0% | |
| TTGCGGCAATACATGATGAT+AGG | + | chr1_3:11646334-11646353 | None:intergenic | 40.0% | |
| TGTGAACTTGTGTTGCATGA+AGG | - | chr1_3:11646477-11646496 | Msa0104130:CDS | 40.0% | |
| ! | TATCAGAGTGCTTCTTTGTG+AGG | + | chr1_3:11644853-11644872 | None:intergenic | 40.0% |
| CACTTCCTCTATGATCTCTT+AGG | + | chr1_3:11645117-11645136 | None:intergenic | 40.0% | |
| GAGATCATAGAGGAAGTGAT+TGG | - | chr1_3:11645119-11645138 | Msa0104130:intron | 40.0% | |
| GACACATTGAGGATAGTTCA+AGG | + | chr1_3:11645282-11645301 | None:intergenic | 40.0% | |
| !! | AAAGATGAAGGTAATGGACG+AGG | - | chr1_3:11645303-11645322 | Msa0104130:intron | 40.0% |
| ATGGTAGAGGAAGAAGAAGA+TGG | - | chr1_3:11645406-11645425 | Msa0104130:intron | 40.0% | |
| ! | TGATAACGATGACGTTGATG+AGG | - | chr1_3:11645432-11645451 | Msa0104130:CDS | 40.0% |
| !! | TAAAGATGGTGTTGATGAGG+AGG | - | chr1_3:11645528-11645547 | Msa0104130:intron | 40.0% |
| !! | GATATTGGTTTAGGGAGCAT+TGG | - | chr1_3:11645772-11645791 | Msa0104130:CDS | 40.0% |
| GCTGAAATGTATATTCAGCC+AGG | - | chr1_3:11645838-11645857 | Msa0104130:CDS | 40.0% | |
| ! | GCATAGAAGTATGGATTTCC+TGG | + | chr1_3:11645859-11645878 | None:intergenic | 40.0% |
| ! | TAGTCCATTTTCTTAGGCCT+AGG | - | chr1_3:11646012-11646031 | Msa0104130:CDS | 40.0% |
| ! | AGTCCATTTTCTTAGGCCTA+GGG | - | chr1_3:11646013-11646032 | Msa0104130:CDS | 40.0% |
| TTCATCCTTTCTGTCATCAC+AGG | - | chr1_3:11646284-11646303 | Msa0104130:intron | 40.0% | |
| AACATCCTGTGATGACAGAA+AGG | + | chr1_3:11646292-11646311 | None:intergenic | 40.0% | |
| TTGCGGCAATACATGATGAT+AGG | + | chr1_3:11646334-11646353 | None:intergenic | 40.0% | |
| TGTGAACTTGTGTTGCATGA+AGG | - | chr1_3:11646477-11646496 | Msa0104130:CDS | 40.0% | |
| GAAGAAGTTAGGGAACTCCT+TGG | + | chr1_3:11644822-11644841 | None:intergenic | 45.0% | |
| TCAGCTTCACAAAAGCCGTT+GGG | + | chr1_3:11645060-11645079 | None:intergenic | 45.0% | |
| ATCAGCTTCACAAAAGCCGT+TGG | + | chr1_3:11645061-11645080 | None:intergenic | 45.0% | |
| TACGATAGAGGATGAGGAAG+AGG | - | chr1_3:11645339-11645358 | Msa0104130:intron | 45.0% | |
| ! | TAACGATGACGTTGATGAGG+AGG | - | chr1_3:11645435-11645454 | Msa0104130:CDS | 45.0% |
| TCACCCTAGGCCTAAGAAAA+TGG | + | chr1_3:11646019-11646038 | None:intergenic | 45.0% | |
| ! | ATTTTCTTAGGCCTAGGGTG+AGG | - | chr1_3:11646018-11646037 | Msa0104130:CDS | 45.0% |
| CTTGCAGTGGCAACATACAA+GGG | + | chr1_3:11646161-11646180 | None:intergenic | 45.0% | |
| GAAGAAGTTAGGGAACTCCT+TGG | + | chr1_3:11644822-11644841 | None:intergenic | 45.0% | |
| TCAGCTTCACAAAAGCCGTT+GGG | + | chr1_3:11645060-11645079 | None:intergenic | 45.0% | |
| ATCAGCTTCACAAAAGCCGT+TGG | + | chr1_3:11645061-11645080 | None:intergenic | 45.0% | |
| TACGATAGAGGATGAGGAAG+AGG | - | chr1_3:11645339-11645358 | Msa0104130:intron | 45.0% | |
| ! | TAACGATGACGTTGATGAGG+AGG | - | chr1_3:11645435-11645454 | Msa0104130:CDS | 45.0% |
| TCACCCTAGGCCTAAGAAAA+TGG | + | chr1_3:11646019-11646038 | None:intergenic | 45.0% | |
| ! | ATTTTCTTAGGCCTAGGGTG+AGG | - | chr1_3:11646018-11646037 | Msa0104130:CDS | 45.0% |
| CTTGCAGTGGCAACATACAA+GGG | + | chr1_3:11646161-11646180 | None:intergenic | 45.0% | |
| !! | AAATAATGTATAATAATATT+TGG | + | chr1_3:11644911-11644930 | None:intergenic | 5.0% |
| !! | AAATAATGTATAATAATATT+TGG | + | chr1_3:11644911-11644930 | None:intergenic | 5.0% |
| TCTGCTGCAGCTTATCCCAA+CGG | - | chr1_3:11645042-11645061 | Msa0104130:intron | 50.0% | |
| CATGTCAAAGTGCGCCCTAT+CGG | - | chr1_3:11645142-11645161 | Msa0104130:intron | 50.0% | |
| !! | GATGAAGGTAATGGACGAGG+AGG | - | chr1_3:11645306-11645325 | Msa0104130:intron | 50.0% |
| AGAGGATGAGGAAGAGGAAG+AGG | - | chr1_3:11645345-11645364 | Msa0104130:intron | 50.0% | |
| GAGGAAGAGGAAGAGGAAGA+TGG | - | chr1_3:11645352-11645371 | Msa0104130:intron | 50.0% | |
| !! | AGATGGTGTTGATGAGGAGG+AGG | - | chr1_3:11645531-11645550 | Msa0104130:intron | 50.0% |
| ! | TGTTGATGAGGAGGAGGACA+AGG | - | chr1_3:11645537-11645556 | Msa0104130:intron | 50.0% |
| GCCTAGGGTGAGGATGAAAT+TGG | - | chr1_3:11646028-11646047 | Msa0104130:CDS | 50.0% | |
| GCCAATTTCATCCTCACCCT+AGG | + | chr1_3:11646032-11646051 | None:intergenic | 50.0% | |
| CCTTGCAGTGGCAACATACA+AGG | + | chr1_3:11646162-11646181 | None:intergenic | 50.0% | |
| CCTTGTATGTTGCCACTGCA+AGG | - | chr1_3:11646159-11646178 | Msa0104130:CDS | 50.0% | |
| ATGGCCGAGTATTTGTGCGA+GGG | - | chr1_3:11646403-11646422 | Msa0104130:intron | 50.0% | |
| ! | ATGCTAAGGGTGCACGTTGT+TGG | - | chr1_3:11646513-11646532 | Msa0104130:exon | 50.0% |
| ! | TGCTAAGGGTGCACGTTGTT+GGG | - | chr1_3:11646514-11646533 | Msa0104130:exon | 50.0% |
| TCTGCTGCAGCTTATCCCAA+CGG | - | chr1_3:11645042-11645061 | Msa0104130:intron | 50.0% | |
| CATGTCAAAGTGCGCCCTAT+CGG | - | chr1_3:11645142-11645161 | Msa0104130:intron | 50.0% | |
| !! | GATGAAGGTAATGGACGAGG+AGG | - | chr1_3:11645306-11645325 | Msa0104130:intron | 50.0% |
| AGAGGATGAGGAAGAGGAAG+AGG | - | chr1_3:11645345-11645364 | Msa0104130:intron | 50.0% | |
| GAGGAAGAGGAAGAGGAAGA+TGG | - | chr1_3:11645352-11645371 | Msa0104130:intron | 50.0% | |
| !! | AGATGGTGTTGATGAGGAGG+AGG | - | chr1_3:11645531-11645550 | Msa0104130:intron | 50.0% |
| ! | TGTTGATGAGGAGGAGGACA+AGG | - | chr1_3:11645537-11645556 | Msa0104130:intron | 50.0% |
| GCCTAGGGTGAGGATGAAAT+TGG | - | chr1_3:11646028-11646047 | Msa0104130:CDS | 50.0% | |
| GCCAATTTCATCCTCACCCT+AGG | + | chr1_3:11646032-11646051 | None:intergenic | 50.0% | |
| CCTTGCAGTGGCAACATACA+AGG | + | chr1_3:11646162-11646181 | None:intergenic | 50.0% | |
| CCTTGTATGTTGCCACTGCA+AGG | - | chr1_3:11646159-11646178 | Msa0104130:CDS | 50.0% | |
| ATGGCCGAGTATTTGTGCGA+GGG | - | chr1_3:11646403-11646422 | Msa0104130:intron | 50.0% | |
| ! | ATGCTAAGGGTGCACGTTGT+TGG | - | chr1_3:11646513-11646532 | Msa0104130:exon | 50.0% |
| ! | TGCTAAGGGTGCACGTTGTT+GGG | - | chr1_3:11646514-11646533 | Msa0104130:exon | 50.0% |
| ! | CGATGACGTTGATGAGGAGG+AGG | - | chr1_3:11645438-11645457 | Msa0104130:CDS | 55.0% |
| ! | CGTTGATGAGGAGGAGGATG+AGG | - | chr1_3:11645444-11645463 | Msa0104130:CDS | 55.0% |
| GATGGCCGAGTATTTGTGCG+AGG | - | chr1_3:11646402-11646421 | Msa0104130:intron | 55.0% | |
| CCCACCCTCGCACAAATACT+CGG | + | chr1_3:11646410-11646429 | None:intergenic | 55.0% | |
| CCGAGTATTTGTGCGAGGGT+GGG | - | chr1_3:11646407-11646426 | Msa0104130:intron | 55.0% | |
| ! | GCTAAGGGTGCACGTTGTTG+GGG | - | chr1_3:11646515-11646534 | Msa0104130:exon | 55.0% |
| ! | CGATGACGTTGATGAGGAGG+AGG | - | chr1_3:11645438-11645457 | Msa0104130:CDS | 55.0% |
| ! | CGTTGATGAGGAGGAGGATG+AGG | - | chr1_3:11645444-11645463 | Msa0104130:CDS | 55.0% |
| GATGGCCGAGTATTTGTGCG+AGG | - | chr1_3:11646402-11646421 | Msa0104130:intron | 55.0% | |
| CCCACCCTCGCACAAATACT+CGG | + | chr1_3:11646410-11646429 | None:intergenic | 55.0% | |
| CCGAGTATTTGTGCGAGGGT+GGG | - | chr1_3:11646407-11646426 | Msa0104130:intron | 55.0% | |
| ! | GCTAAGGGTGCACGTTGTTG+GGG | - | chr1_3:11646515-11646534 | Msa0104130:exon | 55.0% |
| GCCGAGTATTTGTGCGAGGG+TGG | - | chr1_3:11646406-11646425 | Msa0104130:intron | 60.0% | |
| GCCGAGTATTTGTGCGAGGG+TGG | - | chr1_3:11646406-11646425 | Msa0104130:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 11644784 | 11646542 | 11644784 | ID=Msa0104130;Name=Msa0104130 |
| chr1_3 | mRNA | 11644784 | 11646542 | 11644784 | ID=Msa0104130-mRNA-1;Parent=Msa0104130;Name=Msa0104130-mRNA-1;_AED=0.14;_eAED=0.14;_QI=22|0.16|0.14|1|0.66|0.42|7|0|368 |
| chr1_3 | exon | 11644784 | 11645020 | 11644784 | ID=Msa0104130-mRNA-1:exon:4754;Parent=Msa0104130-mRNA-1 |
| chr1_3 | exon | 11645146 | 11645223 | 11645146 | ID=Msa0104130-mRNA-1:exon:4753;Parent=Msa0104130-mRNA-1 |
| chr1_3 | exon | 11645417 | 11645541 | 11645417 | ID=Msa0104130-mRNA-1:exon:4752;Parent=Msa0104130-mRNA-1 |
| chr1_3 | exon | 11645668 | 11645911 | 11645668 | ID=Msa0104130-mRNA-1:exon:4751;Parent=Msa0104130-mRNA-1 |
| chr1_3 | exon | 11645918 | 11646055 | 11645918 | ID=Msa0104130-mRNA-1:exon:4750;Parent=Msa0104130-mRNA-1 |
| chr1_3 | exon | 11646065 | 11646274 | 11646065 | ID=Msa0104130-mRNA-1:exon:4749;Parent=Msa0104130-mRNA-1 |
| chr1_3 | exon | 11646449 | 11646542 | 11646449 | ID=Msa0104130-mRNA-1:exon:4748;Parent=Msa0104130-mRNA-1 |
| chr1_3 | five_prime_UTR | 11646521 | 11646542 | 11646521 | ID=Msa0104130-mRNA-1:five_prime_utr;Parent=Msa0104130-mRNA-1 |
| chr1_3 | CDS | 11646449 | 11646520 | 11646449 | ID=Msa0104130-mRNA-1:cds;Parent=Msa0104130-mRNA-1 |
| chr1_3 | CDS | 11646065 | 11646274 | 11646065 | ID=Msa0104130-mRNA-1:cds;Parent=Msa0104130-mRNA-1 |
| chr1_3 | CDS | 11645918 | 11646055 | 11645918 | ID=Msa0104130-mRNA-1:cds;Parent=Msa0104130-mRNA-1 |
| chr1_3 | CDS | 11645668 | 11645911 | 11645668 | ID=Msa0104130-mRNA-1:cds;Parent=Msa0104130-mRNA-1 |
| chr1_3 | CDS | 11645417 | 11645541 | 11645417 | ID=Msa0104130-mRNA-1:cds;Parent=Msa0104130-mRNA-1 |
| chr1_3 | CDS | 11645146 | 11645223 | 11645146 | ID=Msa0104130-mRNA-1:cds;Parent=Msa0104130-mRNA-1 |
| chr1_3 | CDS | 11644784 | 11645020 | 11644784 | ID=Msa0104130-mRNA-1:cds;Parent=Msa0104130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
