Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0104510 | XP_004498435.1 | 54.386 | 171 | 51 | 2 | 1 | 171 | 1 | 144 | 2.46e-53 | 177 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0104510 | sp|Q9SFD8|NFYB9_ARATH | 53.846 | 91 | 42 | 0 | 54 | 144 | 57 | 147 | 8.21e-34 | 122 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0104510 | A0A1S2Y2P9 | 54.386 | 171 | 51 | 2 | 1 | 171 | 1 | 144 | 1.17e-53 | 177 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0104510 | TF | NF-YB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0104510 | MtrunA17_Chr1g0158951 | 82.609 | 92 | 16 | 0 | 86 | 177 | 19 | 110 | 9.18e-53 | 164 |
| Msa0104510 | MtrunA17_Chr1g0165041 | 63.333 | 90 | 33 | 0 | 55 | 144 | 5 | 94 | 1.34e-39 | 133 |
| Msa0104510 | MtrunA17_Chr4g0076381 | 46.715 | 137 | 68 | 3 | 10 | 144 | 13 | 146 | 1.37e-35 | 124 |
| Msa0104510 | MtrunA17_Chr1g0159271 | 58.065 | 93 | 39 | 0 | 70 | 162 | 1 | 93 | 3.47e-34 | 116 |
| Msa0104510 | MtrunA17_Chr7g0263601 | 50.000 | 98 | 47 | 1 | 49 | 144 | 17 | 114 | 6.45e-34 | 118 |
| Msa0104510 | MtrunA17_Chr3g0102351 | 44.828 | 145 | 70 | 5 | 34 | 173 | 2 | 141 | 6.74e-34 | 118 |
| Msa0104510 | MtrunA17_Chr8g0382931 | 53.846 | 91 | 42 | 0 | 54 | 144 | 26 | 116 | 1.14e-33 | 118 |
| Msa0104510 | MtrunA17_Chr2g0290491 | 44.444 | 117 | 58 | 1 | 37 | 153 | 5 | 114 | 1.21e-33 | 117 |
| Msa0104510 | MtrunA17_Chr1g0185911 | 52.747 | 91 | 43 | 0 | 54 | 144 | 27 | 117 | 3.26e-33 | 116 |
| Msa0104510 | MtrunA17_Chr5g0446491 | 46.789 | 109 | 54 | 1 | 55 | 163 | 22 | 126 | 8.17e-33 | 115 |
| Msa0104510 | MtrunA17_Chr4g0076321 | 42.308 | 130 | 70 | 1 | 37 | 166 | 5 | 129 | 2.73e-32 | 112 |
| Msa0104510 | MtrunA17_Chr8g0384451 | 45.000 | 100 | 55 | 0 | 55 | 154 | 39 | 138 | 7.55e-30 | 108 |
| Msa0104510 | MtrunA17_Chr2g0296321 | 48.889 | 90 | 46 | 0 | 55 | 144 | 65 | 154 | 7.64e-28 | 104 |
| Msa0104510 | MtrunA17_Chr4g0067091 | 46.465 | 99 | 53 | 0 | 55 | 153 | 21 | 119 | 7.67e-28 | 103 |
| Msa0104510 | MtrunA17_Chr1g0195851 | 46.316 | 95 | 51 | 0 | 55 | 149 | 35 | 129 | 1.39e-27 | 102 |
| Msa0104510 | MtrunA17_Chr1g0159291 | 48.750 | 80 | 41 | 0 | 57 | 136 | 3 | 82 | 3.81e-24 | 90.5 |
| Msa0104510 | MtrunA17_Chr1g0191981 | 40.230 | 87 | 52 | 0 | 58 | 144 | 6 | 92 | 2.51e-21 | 84.3 |
| Msa0104510 | MtrunA17_Chr5g0446601 | 41.176 | 85 | 50 | 0 | 61 | 145 | 29 | 113 | 5.04e-19 | 80.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0104510 | AT5G47670.2 | 54.945 | 91 | 41 | 0 | 54 | 144 | 27 | 117 | 6.34e-35 | 122 |
| Msa0104510 | AT1G21970.1 | 53.846 | 91 | 42 | 0 | 54 | 144 | 57 | 147 | 8.34e-35 | 122 |
| Msa0104510 | AT5G47670.1 | 55.556 | 90 | 40 | 0 | 55 | 144 | 57 | 146 | 9.37e-35 | 122 |
| Msa0104510 | AT5G47670.3 | 55.556 | 90 | 40 | 0 | 55 | 144 | 57 | 146 | 9.37e-35 | 122 |
| Msa0104510 | AT4G14540.1 | 53.846 | 91 | 42 | 0 | 54 | 144 | 19 | 109 | 1.34e-34 | 119 |
| Msa0104510 | AT2G38880.3 | 45.000 | 120 | 55 | 1 | 55 | 174 | 20 | 128 | 7.23e-34 | 117 |
| Msa0104510 | AT2G38880.2 | 45.000 | 120 | 55 | 1 | 55 | 174 | 20 | 128 | 8.66e-34 | 117 |
| Msa0104510 | AT2G38880.1 | 45.000 | 120 | 55 | 1 | 55 | 174 | 20 | 128 | 8.66e-34 | 117 |
| Msa0104510 | AT2G38880.5 | 45.000 | 120 | 55 | 1 | 55 | 174 | 20 | 128 | 8.66e-34 | 117 |
| Msa0104510 | AT2G38880.7 | 45.000 | 120 | 53 | 1 | 55 | 174 | 20 | 126 | 1.35e-33 | 116 |
| Msa0104510 | AT2G38880.4 | 51.648 | 91 | 44 | 0 | 54 | 144 | 19 | 109 | 1.33e-32 | 113 |
| Msa0104510 | AT5G47640.1 | 51.648 | 91 | 44 | 0 | 55 | 145 | 26 | 116 | 2.35e-32 | 115 |
| Msa0104510 | AT2G38880.11 | 51.648 | 91 | 44 | 0 | 54 | 144 | 19 | 109 | 2.78e-32 | 114 |
| Msa0104510 | AT2G38880.8 | 51.648 | 91 | 44 | 0 | 54 | 144 | 19 | 109 | 2.78e-32 | 114 |
| Msa0104510 | AT3G53340.5 | 43.220 | 118 | 56 | 1 | 55 | 172 | 28 | 134 | 3.51e-32 | 114 |
| Msa0104510 | AT3G53340.1 | 43.220 | 118 | 56 | 1 | 55 | 172 | 28 | 134 | 3.51e-32 | 114 |
| Msa0104510 | AT2G37060.2 | 44.444 | 117 | 61 | 2 | 31 | 144 | 3 | 118 | 4.37e-32 | 114 |
| Msa0104510 | AT2G37060.3 | 44.444 | 117 | 61 | 2 | 31 | 144 | 3 | 118 | 4.37e-32 | 114 |
| Msa0104510 | AT2G37060.1 | 44.444 | 117 | 61 | 2 | 31 | 144 | 3 | 118 | 4.37e-32 | 114 |
| Msa0104510 | AT3G53340.4 | 50.549 | 91 | 45 | 0 | 54 | 144 | 27 | 117 | 1.04e-31 | 111 |
| Msa0104510 | AT2G38880.9 | 49.474 | 95 | 48 | 0 | 54 | 148 | 19 | 113 | 1.23e-31 | 112 |
| Msa0104510 | AT2G38880.10 | 49.474 | 95 | 48 | 0 | 54 | 148 | 19 | 113 | 1.23e-31 | 112 |
| Msa0104510 | AT2G38880.6 | 49.474 | 95 | 48 | 0 | 54 | 148 | 19 | 113 | 1.23e-31 | 112 |
| Msa0104510 | AT3G53340.3 | 50.549 | 91 | 45 | 0 | 54 | 144 | 27 | 117 | 1.58e-30 | 108 |
| Msa0104510 | AT3G53340.2 | 50.549 | 91 | 45 | 0 | 54 | 144 | 27 | 117 | 1.58e-30 | 108 |
| Msa0104510 | AT2G13570.1 | 49.451 | 91 | 46 | 0 | 55 | 145 | 35 | 125 | 5.79e-30 | 109 |
| Msa0104510 | AT2G47810.1 | 40.164 | 122 | 63 | 1 | 54 | 175 | 49 | 160 | 2.23e-27 | 101 |
| Msa0104510 | AT1G09030.1 | 41.573 | 89 | 52 | 0 | 56 | 144 | 3 | 91 | 2.37e-23 | 90.5 |
Find 34 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACAGCGAACGATTTAATA+TGG | 0.243997 | 1_3:-12453968 | Msa0104510:CDS |
| ATGAATTACCTACTTCAAAA+TGG | 0.257898 | 1_3:+12454255 | None:intergenic |
| TTGTCGAATCCAATTGTAAT+TGG | 0.273848 | 1_3:+12453852 | None:intergenic |
| TTAAAGTCTTAAAAGTAGTA+TGG | 0.360701 | 1_3:-12454936 | Msa0104510:exon |
| AGGTAAATGCTGCTTAGTTC+CGG | 0.363825 | 1_3:+12454178 | None:intergenic |
| AATGACATGCCAATTACAAT+TGG | 0.392076 | 1_3:-12453861 | Msa0104510:CDS |
| GTGTTGAACGACTAAGGTTA+AGG | 0.408775 | 1_3:+12454897 | None:intergenic |
| CCACATAGTTACGATACCTT+TGG | 0.434158 | 1_3:+12453892 | None:intergenic |
| TTGATTGTGTTGAACGACTA+AGG | 0.437171 | 1_3:+12454891 | None:intergenic |
| ATATGGGCAATGGATAGGTT+AGG | 0.445811 | 1_3:-12453951 | Msa0104510:CDS |
| TGTTGAACGACTAAGGTTAA+GGG | 0.465410 | 1_3:+12454898 | None:intergenic |
| CATAGTTACGATACCTTTGG+AGG | 0.481766 | 1_3:+12453895 | None:intergenic |
| CTTAAAAGTAGTATGGAGAA+TGG | 0.482031 | 1_3:-12454929 | Msa0104510:exon |
| TACAGCGAACGATTTAATAT+GGG | 0.483846 | 1_3:-12453967 | Msa0104510:CDS |
| ATTCTTGTCAATTGCACGAT+GGG | 0.485603 | 1_3:+12454128 | None:intergenic |
| ATTTAATATGGGCAATGGAT+AGG | 0.498662 | 1_3:-12453956 | Msa0104510:CDS |
| CGTTCAACACAATCAAGCTC+TGG | 0.512773 | 1_3:-12454884 | Msa0104510:intron |
| TGGATTCGACAAGGATGGAT+CGG | 0.517609 | 1_3:-12453841 | Msa0104510:CDS |
| AACGACTAAGGTTAAGGGAC+GGG | 0.520234 | 1_3:+12454903 | None:intergenic |
| ACAATTGGATTCGACAAGGA+TGG | 0.533736 | 1_3:-12453846 | Msa0104510:CDS |
| GGATTCGACAAGGATGGATC+GGG | 0.534384 | 1_3:-12453840 | Msa0104510:CDS |
| GAACGATTTAATATGGGCAA+TGG | 0.552208 | 1_3:-12453961 | Msa0104510:CDS |
| TTTACCTAAAACAAAGAATG+AGG | 0.564286 | 1_3:-12454162 | Msa0104510:CDS |
| AAGGATGGATCGGGTGCTAG+TGG | 0.571277 | 1_3:-12453831 | Msa0104510:CDS |
| AACAACAATAACTTTCACAC+CGG | 0.626294 | 1_3:-12454197 | Msa0104510:CDS |
| TTTGGAGGTAAAAGACTAGA+GGG | 0.630419 | 1_3:+12453910 | None:intergenic |
| CATGAGCATCATCACGAGTG+AGG | 0.643678 | 1_3:-12454027 | Msa0104510:CDS |
| CCAAAGGTATCGTAACTATG+TGG | 0.644573 | 1_3:-12453892 | Msa0104510:CDS |
| GAACGACTAAGGTTAAGGGA+CGG | 0.644933 | 1_3:+12454902 | None:intergenic |
| GATTCTTGTCAATTGCACGA+TGG | 0.645811 | 1_3:+12454127 | None:intergenic |
| CTTTGGAGGTAAAAGACTAG+AGG | 0.649236 | 1_3:+12453909 | None:intergenic |
| AATTACAATTGGATTCGACA+AGG | 0.668467 | 1_3:-12453850 | Msa0104510:CDS |
| TCACGAGTGAGGCAAGCGAG+CGG | 0.677839 | 1_3:-12454016 | Msa0104510:CDS |
| TGCAATTGACAAGAATCATG+CGG | 0.689401 | 1_3:-12454121 | Msa0104510:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAAGAATTATTATTTTTAAA+AGG | - | chr1_3:12453954-12453973 | Msa0104510:CDS | 10.0% |
| !!! | CAAGAATTATTATTTTTAAA+AGG | - | chr1_3:12453954-12453973 | Msa0104510:CDS | 10.0% |
| !!! | TGCTTATATTTTTTTTTTTG+AGG | - | chr1_3:12454161-12454180 | Msa0104510:CDS | 15.0% |
| !!! | GCTTATATTTTTTTTTTTGA+GGG | - | chr1_3:12454162-12454181 | Msa0104510:CDS | 15.0% |
| !! | AAACAAAGATCTAAAAAATA+AGG | - | chr1_3:12454325-12454344 | Msa0104510:intron | 15.0% |
| !!! | TGCTTATATTTTTTTTTTTG+AGG | - | chr1_3:12454161-12454180 | Msa0104510:CDS | 15.0% |
| !!! | GCTTATATTTTTTTTTTTGA+GGG | - | chr1_3:12454162-12454181 | Msa0104510:CDS | 15.0% |
| !! | AAACAAAGATCTAAAAAATA+AGG | - | chr1_3:12454325-12454344 | Msa0104510:intron | 15.0% |
| !! | TTAAAGTCTTAAAAGTAGTA+TGG | - | chr1_3:12453797-12453816 | Msa0104510:CDS | 20.0% |
| !!! | GATTATTTTTGAGAAATAAG+AGG | + | chr1_3:12453935-12453954 | None:intergenic | 20.0% |
| !! | TTAAAGTCTTAAAAGTAGTA+TGG | - | chr1_3:12453797-12453816 | Msa0104510:CDS | 20.0% |
| !!! | GATTATTTTTGAGAAATAAG+AGG | + | chr1_3:12453935-12453954 | None:intergenic | 20.0% |
| !!! | TGTACAATTTTGGTTGTTTA+GGG | + | chr1_3:12453881-12453900 | None:intergenic | 25.0% |
| ! | AATCGTATCTTCGTTATTAT+GGG | - | chr1_3:12453902-12453921 | Msa0104510:CDS | 25.0% |
| !!! | TTTTACTTTGAAGAAGATTG+AGG | - | chr1_3:12454010-12454029 | Msa0104510:CDS | 25.0% |
| !! | TCAAACAAAATTGAGGTATT+TGG | - | chr1_3:12454093-12454112 | Msa0104510:CDS | 25.0% |
| ! | ATGAATTACCTACTTCAAAA+TGG | + | chr1_3:12454481-12454500 | None:intergenic | 25.0% |
| ! | TTTACCTAAAACAAAGAATG+AGG | - | chr1_3:12454571-12454590 | Msa0104510:intron | 25.0% |
| !!! | TGTACAATTTTGGTTGTTTA+GGG | + | chr1_3:12453881-12453900 | None:intergenic | 25.0% |
| ! | AATCGTATCTTCGTTATTAT+GGG | - | chr1_3:12453902-12453921 | Msa0104510:CDS | 25.0% |
| !!! | TTTTACTTTGAAGAAGATTG+AGG | - | chr1_3:12454010-12454029 | Msa0104510:CDS | 25.0% |
| !! | TCAAACAAAATTGAGGTATT+TGG | - | chr1_3:12454093-12454112 | Msa0104510:CDS | 25.0% |
| ! | ATGAATTACCTACTTCAAAA+TGG | + | chr1_3:12454481-12454500 | None:intergenic | 25.0% |
| ! | TTTACCTAAAACAAAGAATG+AGG | - | chr1_3:12454571-12454590 | Msa0104510:intron | 25.0% |
| CTTAAAAGTAGTATGGAGAA+TGG | - | chr1_3:12453804-12453823 | Msa0104510:CDS | 30.0% | |
| !!! | GTGTACAATTTTGGTTGTTT+AGG | + | chr1_3:12453882-12453901 | None:intergenic | 30.0% |
| ! | GATACGATTGTGTACAATTT+TGG | + | chr1_3:12453891-12453910 | None:intergenic | 30.0% |
| CAATCGTATCTTCGTTATTA+TGG | - | chr1_3:12453901-12453920 | Msa0104510:CDS | 30.0% | |
| ! | ACAGACAGAGTATTCAATTA+TGG | + | chr1_3:12454050-12454069 | None:intergenic | 30.0% |
| AAGTGAGTCAAACAAAATTG+AGG | - | chr1_3:12454086-12454105 | Msa0104510:CDS | 30.0% | |
| !! | TCAAAGAAGGTTGATGTATT+TGG | + | chr1_3:12454132-12454151 | None:intergenic | 30.0% |
| AGCAAAAAGTAAGTCAAAGA+AGG | + | chr1_3:12454145-12454164 | None:intergenic | 30.0% | |
| TAATGCCTTAAGAATCCAAT+GGG | + | chr1_3:12454285-12454304 | None:intergenic | 30.0% | |
| ! | ACTTGTTAAACATCTTGTAC+AGG | - | chr1_3:12454362-12454381 | Msa0104510:intron | 30.0% |
| CTTGTTAAACATCTTGTACA+GGG | - | chr1_3:12454363-12454382 | Msa0104510:intron | 30.0% | |
| AACAACAATAACTTTCACAC+CGG | - | chr1_3:12454536-12454555 | Msa0104510:intron | 30.0% | |
| TTACAGCGAACGATTTAATA+TGG | - | chr1_3:12454765-12454784 | Msa0104510:intron | 30.0% | |
| TACAGCGAACGATTTAATAT+GGG | - | chr1_3:12454766-12454785 | Msa0104510:intron | 30.0% | |
| ATTTAATATGGGCAATGGAT+AGG | - | chr1_3:12454777-12454796 | Msa0104510:intron | 30.0% | |
| !!! | TTAGGTTTTGAAGACTATGT+TGG | - | chr1_3:12454800-12454819 | Msa0104510:intron | 30.0% |
| AATGACATGCCAATTACAAT+TGG | - | chr1_3:12454872-12454891 | Msa0104510:intron | 30.0% | |
| TTGTCGAATCCAATTGTAAT+TGG | + | chr1_3:12454884-12454903 | None:intergenic | 30.0% | |
| AATTACAATTGGATTCGACA+AGG | - | chr1_3:12454883-12454902 | Msa0104510:intron | 30.0% | |
| CTTAAAAGTAGTATGGAGAA+TGG | - | chr1_3:12453804-12453823 | Msa0104510:CDS | 30.0% | |
| !!! | GTGTACAATTTTGGTTGTTT+AGG | + | chr1_3:12453882-12453901 | None:intergenic | 30.0% |
| ! | GATACGATTGTGTACAATTT+TGG | + | chr1_3:12453891-12453910 | None:intergenic | 30.0% |
| CAATCGTATCTTCGTTATTA+TGG | - | chr1_3:12453901-12453920 | Msa0104510:CDS | 30.0% | |
| ! | ACAGACAGAGTATTCAATTA+TGG | + | chr1_3:12454050-12454069 | None:intergenic | 30.0% |
| AAGTGAGTCAAACAAAATTG+AGG | - | chr1_3:12454086-12454105 | Msa0104510:CDS | 30.0% | |
| !! | TCAAAGAAGGTTGATGTATT+TGG | + | chr1_3:12454132-12454151 | None:intergenic | 30.0% |
| AGCAAAAAGTAAGTCAAAGA+AGG | + | chr1_3:12454145-12454164 | None:intergenic | 30.0% | |
| TAATGCCTTAAGAATCCAAT+GGG | + | chr1_3:12454285-12454304 | None:intergenic | 30.0% | |
| ! | ACTTGTTAAACATCTTGTAC+AGG | - | chr1_3:12454362-12454381 | Msa0104510:intron | 30.0% |
| CTTGTTAAACATCTTGTACA+GGG | - | chr1_3:12454363-12454382 | Msa0104510:intron | 30.0% | |
| AACAACAATAACTTTCACAC+CGG | - | chr1_3:12454536-12454555 | Msa0104510:intron | 30.0% | |
| TTACAGCGAACGATTTAATA+TGG | - | chr1_3:12454765-12454784 | Msa0104510:intron | 30.0% | |
| TACAGCGAACGATTTAATAT+GGG | - | chr1_3:12454766-12454785 | Msa0104510:intron | 30.0% | |
| ATTTAATATGGGCAATGGAT+AGG | - | chr1_3:12454777-12454796 | Msa0104510:intron | 30.0% | |
| !!! | TTAGGTTTTGAAGACTATGT+TGG | - | chr1_3:12454800-12454819 | Msa0104510:intron | 30.0% |
| AATGACATGCCAATTACAAT+TGG | - | chr1_3:12454872-12454891 | Msa0104510:intron | 30.0% | |
| TTGTCGAATCCAATTGTAAT+TGG | + | chr1_3:12454884-12454903 | None:intergenic | 30.0% | |
| AATTACAATTGGATTCGACA+AGG | - | chr1_3:12454883-12454902 | Msa0104510:intron | 30.0% | |
| TGTTGAACGACTAAGGTTAA+GGG | + | chr1_3:12453838-12453857 | None:intergenic | 35.0% | |
| TTGATTGTGTTGAACGACTA+AGG | + | chr1_3:12453845-12453864 | None:intergenic | 35.0% | |
| !! | ATCCAATGGGAAGTATTCAA+GGG | + | chr1_3:12454272-12454291 | None:intergenic | 35.0% |
| !! | AATCCAATGGGAAGTATTCA+AGG | + | chr1_3:12454273-12454292 | None:intergenic | 35.0% |
| TACTTCCCATTGGATTCTTA+AGG | - | chr1_3:12454277-12454296 | Msa0104510:intron | 35.0% | |
| GTAATGCCTTAAGAATCCAA+TGG | + | chr1_3:12454286-12454305 | None:intergenic | 35.0% | |
| ! | TAAGGCATTACTTTCCTCTT+TGG | - | chr1_3:12454295-12454314 | Msa0104510:intron | 35.0% |
| TTTGTTTCACATGTCCAAAG+AGG | + | chr1_3:12454312-12454331 | None:intergenic | 35.0% | |
| !! | TTACTTAGCTCTGATCTGTT+TGG | - | chr1_3:12454449-12454468 | Msa0104510:intron | 35.0% |
| !!! | GGATTAGTCCATTTTGAAGT+AGG | - | chr1_3:12454470-12454489 | Msa0104510:intron | 35.0% |
| !!! | TGCTCCTCATTCTTTGTTTT+AGG | + | chr1_3:12454578-12454597 | None:intergenic | 35.0% |
| ATTCTTGTCAATTGCACGAT+GGG | + | chr1_3:12454608-12454627 | None:intergenic | 35.0% | |
| TGCAATTGACAAGAATCATG+CGG | - | chr1_3:12454612-12454631 | Msa0104510:intron | 35.0% | |
| ! | TCAGAGATTTTTACATGCGA+GGG | + | chr1_3:12454647-12454666 | None:intergenic | 35.0% |
| ! | ATCAGAGATTTTTACATGCG+AGG | + | chr1_3:12454648-12454667 | None:intergenic | 35.0% |
| TCGCATGTAAAAATCTCTGA+TGG | - | chr1_3:12454647-12454666 | Msa0104510:intron | 35.0% | |
| GAACGATTTAATATGGGCAA+TGG | - | chr1_3:12454772-12454791 | Msa0104510:intron | 35.0% | |
| TTTGGAGGTAAAAGACTAGA+GGG | + | chr1_3:12454826-12454845 | None:intergenic | 35.0% | |
| TGTTGAACGACTAAGGTTAA+GGG | + | chr1_3:12453838-12453857 | None:intergenic | 35.0% | |
| TTGATTGTGTTGAACGACTA+AGG | + | chr1_3:12453845-12453864 | None:intergenic | 35.0% | |
| !! | ATCCAATGGGAAGTATTCAA+GGG | + | chr1_3:12454272-12454291 | None:intergenic | 35.0% |
| !! | AATCCAATGGGAAGTATTCA+AGG | + | chr1_3:12454273-12454292 | None:intergenic | 35.0% |
| TACTTCCCATTGGATTCTTA+AGG | - | chr1_3:12454277-12454296 | Msa0104510:intron | 35.0% | |
| GTAATGCCTTAAGAATCCAA+TGG | + | chr1_3:12454286-12454305 | None:intergenic | 35.0% | |
| ! | TAAGGCATTACTTTCCTCTT+TGG | - | chr1_3:12454295-12454314 | Msa0104510:intron | 35.0% |
| TTTGTTTCACATGTCCAAAG+AGG | + | chr1_3:12454312-12454331 | None:intergenic | 35.0% | |
| !! | TTACTTAGCTCTGATCTGTT+TGG | - | chr1_3:12454449-12454468 | Msa0104510:intron | 35.0% |
| !!! | GGATTAGTCCATTTTGAAGT+AGG | - | chr1_3:12454470-12454489 | Msa0104510:intron | 35.0% |
| !!! | TGCTCCTCATTCTTTGTTTT+AGG | + | chr1_3:12454578-12454597 | None:intergenic | 35.0% |
| ATTCTTGTCAATTGCACGAT+GGG | + | chr1_3:12454608-12454627 | None:intergenic | 35.0% | |
| TGCAATTGACAAGAATCATG+CGG | - | chr1_3:12454612-12454631 | Msa0104510:intron | 35.0% | |
| ! | TCAGAGATTTTTACATGCGA+GGG | + | chr1_3:12454647-12454666 | None:intergenic | 35.0% |
| ! | ATCAGAGATTTTTACATGCG+AGG | + | chr1_3:12454648-12454667 | None:intergenic | 35.0% |
| TCGCATGTAAAAATCTCTGA+TGG | - | chr1_3:12454647-12454666 | Msa0104510:intron | 35.0% | |
| GAACGATTTAATATGGGCAA+TGG | - | chr1_3:12454772-12454791 | Msa0104510:intron | 35.0% | |
| TTTGGAGGTAAAAGACTAGA+GGG | + | chr1_3:12454826-12454845 | None:intergenic | 35.0% | |
| GTGTTGAACGACTAAGGTTA+AGG | + | chr1_3:12453839-12453858 | None:intergenic | 40.0% | |
| TTCCCTTGAATACTTCCCAT+TGG | - | chr1_3:12454267-12454286 | Msa0104510:intron | 40.0% | |
| ! | AGGTAAATGCTGCTTAGTTC+CGG | + | chr1_3:12454558-12454577 | None:intergenic | 40.0% |
| GATTCTTGTCAATTGCACGA+TGG | + | chr1_3:12454609-12454628 | None:intergenic | 40.0% | |
| ATATGGGCAATGGATAGGTT+AGG | - | chr1_3:12454782-12454801 | Msa0104510:intron | 40.0% | |
| ! | CTTTGGAGGTAAAAGACTAG+AGG | + | chr1_3:12454827-12454846 | None:intergenic | 40.0% |
| !! | CTCTAGTCTTTTACCTCCAA+AGG | - | chr1_3:12454825-12454844 | Msa0104510:intron | 40.0% |
| CATAGTTACGATACCTTTGG+AGG | + | chr1_3:12454841-12454860 | None:intergenic | 40.0% | |
| CCACATAGTTACGATACCTT+TGG | + | chr1_3:12454844-12454863 | None:intergenic | 40.0% | |
| !! | CCAAAGGTATCGTAACTATG+TGG | - | chr1_3:12454841-12454860 | Msa0104510:intron | 40.0% |
| ACAATTGGATTCGACAAGGA+TGG | - | chr1_3:12454887-12454906 | Msa0104510:CDS | 40.0% | |
| GTGTTGAACGACTAAGGTTA+AGG | + | chr1_3:12453839-12453858 | None:intergenic | 40.0% | |
| TTCCCTTGAATACTTCCCAT+TGG | - | chr1_3:12454267-12454286 | Msa0104510:intron | 40.0% | |
| ! | AGGTAAATGCTGCTTAGTTC+CGG | + | chr1_3:12454558-12454577 | None:intergenic | 40.0% |
| GATTCTTGTCAATTGCACGA+TGG | + | chr1_3:12454609-12454628 | None:intergenic | 40.0% | |
| ATATGGGCAATGGATAGGTT+AGG | - | chr1_3:12454782-12454801 | Msa0104510:intron | 40.0% | |
| ! | CTTTGGAGGTAAAAGACTAG+AGG | + | chr1_3:12454827-12454846 | None:intergenic | 40.0% |
| !! | CTCTAGTCTTTTACCTCCAA+AGG | - | chr1_3:12454825-12454844 | Msa0104510:intron | 40.0% |
| CATAGTTACGATACCTTTGG+AGG | + | chr1_3:12454841-12454860 | None:intergenic | 40.0% | |
| CCACATAGTTACGATACCTT+TGG | + | chr1_3:12454844-12454863 | None:intergenic | 40.0% | |
| !! | CCAAAGGTATCGTAACTATG+TGG | - | chr1_3:12454841-12454860 | Msa0104510:intron | 40.0% |
| ACAATTGGATTCGACAAGGA+TGG | - | chr1_3:12454887-12454906 | Msa0104510:CDS | 40.0% | |
| AACGACTAAGGTTAAGGGAC+GGG | + | chr1_3:12453833-12453852 | None:intergenic | 45.0% | |
| GAACGACTAAGGTTAAGGGA+CGG | + | chr1_3:12453834-12453853 | None:intergenic | 45.0% | |
| CGTTCAACACAATCAAGCTC+TGG | - | chr1_3:12453849-12453868 | Msa0104510:CDS | 45.0% | |
| TGGATTCGACAAGGATGGAT+CGG | - | chr1_3:12454892-12454911 | Msa0104510:CDS | 45.0% | |
| AACGACTAAGGTTAAGGGAC+GGG | + | chr1_3:12453833-12453852 | None:intergenic | 45.0% | |
| GAACGACTAAGGTTAAGGGA+CGG | + | chr1_3:12453834-12453853 | None:intergenic | 45.0% | |
| CGTTCAACACAATCAAGCTC+TGG | - | chr1_3:12453849-12453868 | Msa0104510:CDS | 45.0% | |
| TGGATTCGACAAGGATGGAT+CGG | - | chr1_3:12454892-12454911 | Msa0104510:CDS | 45.0% | |
| CATGAGCATCATCACGAGTG+AGG | - | chr1_3:12454706-12454725 | Msa0104510:intron | 50.0% | |
| GGATTCGACAAGGATGGATC+GGG | - | chr1_3:12454893-12454912 | Msa0104510:CDS | 50.0% | |
| CATGAGCATCATCACGAGTG+AGG | - | chr1_3:12454706-12454725 | Msa0104510:intron | 50.0% | |
| GGATTCGACAAGGATGGATC+GGG | - | chr1_3:12454893-12454912 | Msa0104510:CDS | 50.0% | |
| AAGGATGGATCGGGTGCTAG+TGG | - | chr1_3:12454902-12454921 | Msa0104510:CDS | 55.0% | |
| AAGGATGGATCGGGTGCTAG+TGG | - | chr1_3:12454902-12454921 | Msa0104510:CDS | 55.0% | |
| TCACGAGTGAGGCAAGCGAG+CGG | - | chr1_3:12454717-12454736 | Msa0104510:intron | 60.0% | |
| TCACGAGTGAGGCAAGCGAG+CGG | - | chr1_3:12454717-12454736 | Msa0104510:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 12453797 | 12454958 | 12453797 | ID=Msa0104510;Name=Msa0104510 |
| chr1_3 | mRNA | 12453797 | 12454958 | 12453797 | ID=Msa0104510-mRNA-1;Parent=Msa0104510;Name=Msa0104510-mRNA-1;_AED=0.01;_eAED=0.01;_QI=19|1|0.5|1|1|1|2|0|178 |
| chr1_3 | exon | 12453797 | 12454278 | 12453797 | ID=Msa0104510-mRNA-1:exon:4949;Parent=Msa0104510-mRNA-1 |
| chr1_3 | exon | 12454885 | 12454958 | 12454885 | ID=Msa0104510-mRNA-1:exon:4948;Parent=Msa0104510-mRNA-1 |
| chr1_3 | five_prime_UTR | 12454940 | 12454958 | 12454940 | ID=Msa0104510-mRNA-1:five_prime_utr;Parent=Msa0104510-mRNA-1 |
| chr1_3 | CDS | 12454885 | 12454939 | 12454885 | ID=Msa0104510-mRNA-1:cds;Parent=Msa0104510-mRNA-1 |
| chr1_3 | CDS | 12453797 | 12454278 | 12453797 | ID=Msa0104510-mRNA-1:cds;Parent=Msa0104510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
