AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0104710

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0104710 MtrunA17_Chr1g0159291 90.909 88 2 1 43 124 1 88 1.62e-51 165
Msa0104710 MtrunA17_Chr1g0159291 86.364 88 12 0 214 301 1 88 9.30e-48 155
Msa0104710 MtrunA17_Chr4g0076381 38.318 107 63 1 198 304 44 147 4.19e-20 87.8
Msa0104710 MtrunA17_Chr4g0076381 39.474 76 46 0 51 126 71 146 1.09e-15 75.5
Msa0104710 MtrunA17_Chr1g0185911 40.000 110 57 2 210 310 23 132 1.44e-19 84.3
Msa0104710 MtrunA17_Chr1g0185911 42.105 76 44 0 51 126 42 117 1.17e-14 70.9
Msa0104710 MtrunA17_Chr1g0165041 43.011 93 52 1 220 312 11 102 3.91e-19 84.0
Msa0104710 MtrunA17_Chr1g0165041 42.105 76 44 0 51 126 19 94 1.12e-14 71.2
Msa0104710 MtrunA17_Chr3g0102351 39.394 99 59 1 220 318 32 129 6.24e-19 83.2
Msa0104710 MtrunA17_Chr3g0102351 41.975 81 46 1 51 131 40 119 1.19e-14 71.2
Msa0104710 MtrunA17_Chr7g0263601 37.383 107 64 1 220 323 31 137 1.26e-18 82.0
Msa0104710 MtrunA17_Chr7g0263601 41.975 81 46 1 51 131 39 118 4.46e-14 69.3
Msa0104710 MtrunA17_Chr1g0195851 36.000 125 77 2 181 304 3 125 2.31e-18 81.6
Msa0104710 MtrunA17_Chr1g0195851 40.789 76 45 0 51 126 49 124 1.46e-14 71.2
Msa0104710 MtrunA17_Chr8g0382931 39.604 101 60 1 220 320 33 132 3.20e-18 81.6
Msa0104710 MtrunA17_Chr8g0382931 42.105 76 44 0 51 126 41 116 1.31e-13 68.6
Msa0104710 MtrunA17_Chr5g0446491 42.353 85 49 0 220 304 28 112 4.76e-18 80.5
Msa0104710 MtrunA17_Chr5g0446491 42.105 76 44 0 51 126 36 111 2.70e-14 70.1
Msa0104710 MtrunA17_Chr2g0290491 41.573 89 51 1 220 308 22 109 5.50e-18 80.1
Msa0104710 MtrunA17_Chr2g0290491 40.476 84 49 1 51 134 30 112 2.63e-14 69.7
Msa0104710 MtrunA17_Chr4g0076321 39.560 91 55 0 214 304 18 108 6.13e-18 79.0
Msa0104710 MtrunA17_Chr4g0076321 38.824 85 51 1 51 135 32 115 2.18e-14 69.3
Msa0104710 MtrunA17_Chr8g0384451 41.667 84 49 0 220 303 45 128 1.52e-16 77.0
Msa0104710 MtrunA17_Chr8g0384451 40.260 77 46 0 51 127 53 129 2.19e-13 68.2
Msa0104710 MtrunA17_Chr2g0296321 33.036 112 65 1 193 304 54 155 2.44e-16 77.4
Msa0104710 MtrunA17_Chr2g0296321 36.842 76 48 0 51 126 79 154 5.03e-12 65.1
Msa0104710 MtrunA17_Chr1g0159271 47.945 73 38 0 56 128 5 77 4.04e-16 73.2
Msa0104710 MtrunA17_Chr1g0159271 40.260 77 46 0 229 305 1 77 2.21e-11 60.1
Msa0104710 MtrunA17_Chr1g0191981 35.294 85 55 0 220 304 9 93 4.06e-16 73.9
Msa0104710 MtrunA17_Chr1g0191981 35.211 71 46 0 56 126 22 92 7.46e-13 64.7
Msa0104710 MtrunA17_Chr4g0067091 35.185 108 69 1 198 304 4 111 1.24e-15 74.7
Msa0104710 MtrunA17_Chr4g0067091 36.842 76 48 0 51 126 35 110 1.38e-11 63.2
Msa0104710 MtrunA17_Chr1g0158951 38.372 86 39 1 251 322 25 110 1.07e-13 66.6
Msa0104710 MtrunA17_Chr1g0158951 44.643 56 31 0 73 128 24 79 9.24e-13 63.9
Msa0104710 MtrunA17_Chr5g0446601 34.524 84 55 0 220 303 29 112 3.46e-12 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0104710 AT2G38880.7 41.584 101 58 1 220 319 26 126 2.59e-20 85.9
Msa0104710 AT2G38880.7 43.421 76 43 0 51 126 34 109 5.49e-15 71.2
Msa0104710 AT1G21970.1 33.784 148 82 1 173 304 1 148 2.62e-20 88.6
Msa0104710 AT1G21970.1 35.455 110 59 3 25 126 42 147 3.99e-13 68.6
Msa0104710 AT3G53340.5 41.509 106 59 1 220 322 34 139 4.16e-20 86.3
Msa0104710 AT3G53340.5 46.053 76 40 1 56 131 47 121 7.08e-14 69.3
Msa0104710 AT3G53340.1 41.509 106 59 1 220 322 34 139 4.16e-20 86.3
Msa0104710 AT3G53340.1 46.053 76 40 1 56 131 47 121 7.08e-14 69.3
Msa0104710 AT2G38880.3 40.777 103 58 1 220 319 26 128 4.63e-20 85.1
Msa0104710 AT2G38880.3 43.421 76 43 0 51 126 34 109 5.68e-15 71.2
Msa0104710 AT2G38880.2 40.777 103 58 1 220 319 26 128 5.42e-20 85.1
Msa0104710 AT2G38880.2 43.421 76 43 0 51 126 34 109 6.30e-15 71.2
Msa0104710 AT2G38880.1 40.777 103 58 1 220 319 26 128 5.42e-20 85.1
Msa0104710 AT2G38880.1 43.421 76 43 0 51 126 34 109 6.30e-15 71.2
Msa0104710 AT2G38880.5 40.777 103 58 1 220 319 26 128 5.42e-20 85.1
Msa0104710 AT2G38880.5 43.421 76 43 0 51 126 34 109 6.30e-15 71.2
Msa0104710 AT2G37060.2 40.566 106 60 1 220 322 35 140 1.04e-19 85.1
Msa0104710 AT2G37060.2 44.737 76 41 1 56 131 48 122 5.64e-14 69.3
Msa0104710 AT2G37060.3 40.566 106 60 1 220 322 35 140 1.04e-19 85.1
Msa0104710 AT2G37060.3 44.737 76 41 1 56 131 48 122 5.64e-14 69.3
Msa0104710 AT2G37060.1 40.566 106 60 1 220 322 35 140 1.04e-19 85.1
Msa0104710 AT2G37060.1 44.737 76 41 1 56 131 48 122 5.64e-14 69.3
Msa0104710 AT2G38880.4 42.353 85 49 0 220 304 26 110 1.25e-18 80.5
Msa0104710 AT2G38880.4 43.421 76 43 0 51 126 34 109 1.32e-14 69.7
Msa0104710 AT4G14540.1 42.353 85 49 0 220 304 26 110 2.42e-18 81.3
Msa0104710 AT4G14540.1 42.105 76 44 0 51 126 34 109 1.97e-14 70.5
Msa0104710 AT2G38880.9 42.353 85 49 0 220 304 26 110 2.58e-18 80.9
Msa0104710 AT2G38880.9 40.625 96 54 2 51 144 34 128 3.15e-14 69.7
Msa0104710 AT2G38880.10 42.353 85 49 0 220 304 26 110 2.58e-18 80.9
Msa0104710 AT2G38880.10 40.625 96 54 2 51 144 34 128 3.15e-14 69.7
Msa0104710 AT2G38880.6 42.353 85 49 0 220 304 26 110 2.58e-18 80.9
Msa0104710 AT2G38880.6 40.625 96 54 2 51 144 34 128 3.15e-14 69.7
Msa0104710 AT2G38880.11 42.353 85 49 0 220 304 26 110 3.75e-18 80.9
Msa0104710 AT2G38880.11 43.421 76 43 0 51 126 34 109 4.08e-14 69.7
Msa0104710 AT2G38880.8 42.353 85 49 0 220 304 26 110 3.75e-18 80.9
Msa0104710 AT2G38880.8 43.421 76 43 0 51 126 34 109 4.08e-14 69.7
Msa0104710 AT5G47640.1 43.529 85 48 0 220 304 32 116 4.99e-18 81.3
Msa0104710 AT5G47640.1 43.421 76 43 0 51 126 40 115 4.65e-14 70.1
Msa0104710 AT5G47670.2 37.895 95 59 0 220 314 34 128 6.87e-18 81.3
Msa0104710 AT5G47670.2 36.842 76 48 0 51 126 42 117 9.84e-14 69.3
Msa0104710 AT3G53340.4 43.529 85 48 0 220 304 34 118 1.29e-17 78.2
Msa0104710 AT3G53340.4 44.872 78 43 0 56 133 47 124 5.13e-14 68.2
Msa0104710 AT5G47670.1 37.895 95 59 0 220 314 63 157 1.39e-17 80.9
Msa0104710 AT5G47670.1 36.842 76 48 0 51 126 71 146 1.39e-13 69.7
Msa0104710 AT5G47670.3 37.895 95 59 0 220 314 63 157 1.39e-17 80.9
Msa0104710 AT5G47670.3 36.842 76 48 0 51 126 71 146 1.39e-13 69.7
Msa0104710 AT2G47810.1 41.667 84 49 0 220 303 56 139 2.39e-17 78.6
Msa0104710 AT2G47810.1 39.474 76 46 0 51 126 64 139 2.59e-13 67.4
Msa0104710 AT3G53340.3 43.529 85 48 0 220 304 34 118 9.16e-17 76.6
Msa0104710 AT3G53340.3 46.479 71 38 0 56 126 47 117 1.62e-12 64.7
Msa0104710 AT3G53340.2 43.529 85 48 0 220 304 34 118 9.16e-17 76.6
Msa0104710 AT3G53340.2 46.479 71 38 0 56 126 47 117 1.62e-12 64.7
Msa0104710 AT2G13570.1 41.667 84 49 0 220 303 41 124 1.67e-15 74.7
Msa0104710 AT2G13570.1 40.260 77 46 0 51 127 49 125 1.68e-12 66.2
Msa0104710 AT1G09030.1 32.609 92 61 1 214 304 1 92 1.21e-13 67.8
Msa0104710 AT1G09030.1 31.944 72 49 0 55 126 20 91 2.46e-11 61.2

Find 82 sgRNAs with CRISPR-Local

Find 277 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGTTTGTGTCTAAATTTA+AGG 0.219243 1_3:+12852708 Msa0104710:CDS
ATTGTGTGTGTCTAAATTTA+TGG 0.291429 1_3:+12848906 Msa0104710:CDS
CGCACTTCCTCGGCCATTGC+TGG 0.302846 1_3:-12852598 None:intergenic
TTTCTGCTGATGATTTACTA+TGG 0.320933 1_3:+12848983 Msa0104710:CDS
CGCACTTCCTCGCCCATTGT+TGG 0.335463 1_3:-12848796 None:intergenic
TTTCCGCTGATGATTTACTA+TGG 0.336830 1_3:+12852785 Msa0104710:CDS
GAGGAATTTGTTAGGTCTCT+TGG 0.362755 1_3:+12849027 Msa0104710:CDS
ATTTACTATGGACGATGAAT+AGG 0.363355 1_3:+12848995 Msa0104710:CDS
ATTTACTATGGACGATGAAT+AGG 0.363355 1_3:+12852797 Msa0104710:CDS
GAGGAACATGTTCGGTCTCT+TGG 0.363705 1_3:+12852829 Msa0104710:CDS
CATTTGTTCCGCACACTTCA+AGG 0.379251 1_3:-12850305 None:intergenic
TGGGCTTTGAGGAATTTGTT+AGG 0.401864 1_3:+12849019 Msa0104710:CDS
AGGAATTTGTTAGGTCTCTT+GGG 0.404606 1_3:+12849028 Msa0104710:CDS
GAATTGGTCAAACCTTTAGT+TGG 0.405042 1_3:+12850232 Msa0104710:CDS
GATGTTCTACATTGGCTTGT+TGG 0.413393 1_3:-12852753 None:intergenic
GGAGTTGAATGTTGGTTCTC+AGG 0.413844 1_3:-12848775 None:intergenic
GATGAATAGGTTGGGCTTTG+AGG 0.427694 1_3:+12849008 Msa0104710:CDS
GATGAATAGGTTGGGCTTTG+AGG 0.431149 1_3:+12852810 Msa0104710:CDS
GATGTTCTACATTGGCTTGT+TGG 0.438115 1_3:-12848951 None:intergenic
AGGAACATGTTCGGTCTCTT+GGG 0.445239 1_3:+12852830 Msa0104710:CDS
CTATGGACGATGAATAGGTT+GGG 0.452990 1_3:+12849000 Msa0104710:CDS
CTATGGACGATGAATAGGTT+GGG 0.452990 1_3:+12852802 Msa0104710:CDS
ACCAACAACAACACTGGCAT+TGG 0.458777 1_3:+12852553 Msa0104710:CDS
TTCCTTGTGTCGAATTGCTA+TGG 0.461454 1_3:-12848342 None:intergenic
GACTCTTGTCACATGATTGA+TGG 0.464195 1_3:-12848824 None:intergenic
TTGAATCGGTATCCAACTAA+AGG 0.467473 1_3:-12850244 None:intergenic
TAAGATAACAAGAGTTGAAT+CGG 0.467540 1_3:-12850258 None:intergenic
TCCAATGCCAGTGTTGTTGT+TGG 0.470529 1_3:-12852554 None:intergenic
TCAACGTTGGTCATCATCAT+TGG 0.472149 1_3:-12852914 None:intergenic
CGCAAGAACATGGATGGGTC+AGG 0.479316 1_3:+12852871 Msa0104710:CDS
CCAACATTCAACTCCAACAA+TGG 0.484164 1_3:+12848783 Msa0104710:CDS
GAACGGTTGTTGTTAGATGA+AGG 0.489970 1_3:-12851430 None:intergenic
AACTATCGCAACCACATGGA+TGG 0.490022 1_3:+12849063 Msa0104710:CDS
GACTCTTGTCACATGACTGA+TGG 0.498388 1_3:-12852626 None:intergenic
AACTATCGCAAGAACATGGA+TGG 0.501574 1_3:+12852865 Msa0104710:CDS
CAACATTCAACTCCAACAAT+GGG 0.502283 1_3:+12848784 Msa0104710:CDS
TGGGCTTTGAGGAACATGTT+CGG 0.504221 1_3:+12852821 Msa0104710:CDS
CGCAACCACATGGATGGGTC+AGG 0.508099 1_3:+12849069 Msa0104710:CDS
CCATTGTTGGAGTTGAATGT+TGG 0.510977 1_3:-12848783 None:intergenic
CCATTGCTGGAGTTGAATGT+TGG 0.510977 1_3:-12852585 None:intergenic
GCCAGTGTTGTTGTTGGTGG+CGG 0.514598 1_3:-12852548 None:intergenic
CATTAACTCCTTAGCATCAT+CGG 0.517025 1_3:-12848881 None:intergenic
AATGCCAGTGTTGTTGTTGG+TGG 0.520685 1_3:-12852551 None:intergenic
CGTTCGGCACACTCAAGCTC+TGG 0.525104 1_3:+12851448 Msa0104710:CDS
TTCATCTAACAACAACCGTT+CGG 0.526767 1_3:+12851432 Msa0104710:CDS
TCATCAGTGATTATTGTGTC+TGG 0.528332 1_3:-12852667 None:intergenic
TCATCGGTGATTATTGTGTC+TGG 0.529307 1_3:-12848865 None:intergenic
CCGCACACTTCAAGGTATCA+AGG 0.531575 1_3:-12850297 None:intergenic
ACTATGGACGATGAATAGGT+TGG 0.532041 1_3:+12848999 Msa0104710:CDS
ACTATGGACGATGAATAGGT+TGG 0.532041 1_3:+12852801 Msa0104710:CDS
GATGGGCATACGCACTTCCT+CGG 0.539534 1_3:-12852608 None:intergenic
ATTCTCTTGATGTTCTACAT+TGG 0.543777 1_3:-12852761 None:intergenic
AATCATTTGATGTTCTACAT+TGG 0.545949 1_3:-12848959 None:intergenic
TTCAACTCCAGCAATGGCCG+AGG 0.555161 1_3:+12852591 Msa0104710:CDS
ACTCTTGTCACATGACTGAT+GGG 0.557969 1_3:-12852625 None:intergenic
AATAATCACTGATGATGCTA+AGG 0.558102 1_3:+12852675 Msa0104710:CDS
AATAATCACCGATGATGCTA+AGG 0.569664 1_3:+12848873 Msa0104710:CDS
AATTCGACACAAGGAAACTC+TGG 0.570594 1_3:+12848349 Msa0104710:CDS
ATGGATGGGTCAGGTGCTAG+TGG 0.576300 1_3:+12852880 Msa0104710:CDS
CGTTAATTTCATATCAACGT+TGG 0.576753 1_3:-12852927 None:intergenic
TGTGTCTAAATTTAAGGACA+AGG 0.583205 1_3:+12852714 Msa0104710:CDS
AACAACAACAACATTGACGT+TGG 0.590713 1_3:+12848751 Msa0104710:CDS
ACTCTTGTCACATGATTGAT+GGG 0.597608 1_3:-12848823 None:intergenic
TTCAACTCCAACAATGGGCG+AGG 0.597648 1_3:+12848789 Msa0104710:CDS
TATGGACATGGTCACAAGTG+AGG 0.597827 1_3:+12848924 Msa0104710:CDS
ACCGCCACCAACAACAACAC+TGG 0.598342 1_3:+12852547 Msa0104710:CDS
ACTATCGCAACCACATGGAT+GGG 0.604393 1_3:+12849064 Msa0104710:CDS
GAATTGCTATGGTTAGCAGA+GGG 0.608648 1_3:-12848331 None:intergenic
CCAACATTCAACTCCAGCAA+TGG 0.614206 1_3:+12852585 Msa0104710:CDS
AACCATAGCAATTCGACACA+AGG 0.618498 1_3:+12848340 Msa0104710:CDS
CGAATTGCTATGGTTAGCAG+AGG 0.624127 1_3:-12848332 None:intergenic
TAAGGACAAGGTCACAAGTG+AGG 0.624680 1_3:+12852726 Msa0104710:CDS
TCAGTGATTATTGTGTCTGG+TGG 0.634070 1_3:-12852664 None:intergenic
ACTATCGCAAGAACATGGAT+GGG 0.635414 1_3:+12852866 Msa0104710:CDS
TCGGTGATTATTGTGTCTGG+TGG 0.639031 1_3:-12848862 None:intergenic
TTCTAAAGCAGTATGGAGCG+TGG 0.645240 1_3:+12851403 Msa0104710:intron
AATTGCTATGGTTAGCAGAG+GGG 0.653798 1_3:-12848330 None:intergenic
CGTCCATAGTAAATCATCAG+CGG 0.656317 1_3:-12852788 None:intergenic
CAGAGCTTGAGTGTGCCGAA+CGG 0.666284 1_3:-12851447 None:intergenic
TGTGTCTAAATTTATGGACA+TGG 0.681958 1_3:+12848912 Msa0104710:CDS
CCTTGATACCTTGAAGTGTG+CGG 0.720647 1_3:+12850297 Msa0104710:CDS
TAGTACCTGACCCATCCATG+TGG 0.736156 1_3:-12849074 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTAATTA+TGG + chr1_3:12849655-12849674 Msa0104710:intron 0.0%
!! TAATAAATTAAAAATATTAA+AGG - chr1_3:12851863-12851882 None:intergenic 0.0%
!! TTAATTATAATAATTAATTA+AGG + chr1_3:12852073-12852092 Msa0104710:intron 0.0%
!!! AATTCTTTTTTTTTTTTTTC+AGG - chr1_3:12848623-12848642 None:intergenic 10.0%
!! CTAAAAATAACATAAATAAA+AGG - chr1_3:12849214-12849233 None:intergenic 10.0%
!! ATTAAAACATCAATATATAA+AGG - chr1_3:12849392-12849411 None:intergenic 10.0%
!!! AAAAAAATCTTGTTTTTTTA+TGG + chr1_3:12849462-12849481 Msa0104710:intron 10.0%
!!! AAAAAATCTTGTTTTTTTAT+GGG + chr1_3:12849463-12849482 Msa0104710:intron 10.0%
!!! AATCAATAAAATTTGTTATT+TGG - chr1_3:12849590-12849609 None:intergenic 10.0%
!! AAATATATATAGAAAAACAA+AGG - chr1_3:12850714-12850733 None:intergenic 10.0%
!! ATTAAAAATAATAAAATACG+AGG - chr1_3:12851533-12851552 None:intergenic 10.0%
!! AATATATACAAATGAAAAAC+CGG - chr1_3:12848438-12848457 None:intergenic 15.0%
!! ATCTTCAAAATTAAAAGATT+TGG - chr1_3:12848660-12848679 None:intergenic 15.0%
!! TCATGTAAAAAACTATAAAA+AGG - chr1_3:12849431-12849450 None:intergenic 15.0%
!!! AAAACTTTTGAAATGAAATT+AGG - chr1_3:12850461-12850480 None:intergenic 15.0%
!!! TAAAAAAAGTAATTTTGCTT+TGG - chr1_3:12850650-12850669 None:intergenic 15.0%
!!! AAAGCAAAATTACTTTTTTT+AGG + chr1_3:12850649-12850668 Msa0104710:intron 15.0%
!!! TTTTTCTATATATATTTGAG+TGG + chr1_3:12850717-12850736 Msa0104710:intron 15.0%
!! TCTTAACTTTATAATTACAA+GGG - chr1_3:12851040-12851059 None:intergenic 15.0%
!! ATCTTAACTTTATAATTACA+AGG - chr1_3:12851041-12851060 None:intergenic 15.0%
!! AAATAATTATATCTAATACG+AGG - chr1_3:12851082-12851101 None:intergenic 15.0%
!! TATTGAAATTAAATGAAAAG+AGG + chr1_3:12851156-12851175 Msa0104710:intron 15.0%
!!! AATTTTACGTTTCTATTTTA+TGG + chr1_3:12851276-12851295 Msa0104710:intron 15.0%
!!! ATTTTACGTTTCTATTTTAT+GGG + chr1_3:12851277-12851296 Msa0104710:intron 15.0%
!! GAAGTATAAAAGTTTATAGT+TGG + chr1_3:12849296-12849315 Msa0104710:intron 20.0%
!!! GGTTTGATTTTTTACTTATA+TGG + chr1_3:12849317-12849336 Msa0104710:intron 20.0%
!!! CAATAAAATTTGTTATTTGG+CGG - chr1_3:12849587-12849606 None:intergenic 20.0%
!! AATGCTTGTAAATGATATTT+AGG + chr1_3:12849887-12849906 Msa0104710:intron 20.0%
!!! ACTTTTCTAGATAAGTATTA+AGG - chr1_3:12849926-12849945 None:intergenic 20.0%
!! TATCTAAACAATCAACATAT+TGG - chr1_3:12850397-12850416 None:intergenic 20.0%
!! GTTGATTGTTTAGATAATTA+TGG + chr1_3:12850401-12850420 Msa0104710:intron 20.0%
!!! TTCATTTCAAAAGTTTTCTT+AGG + chr1_3:12850464-12850483 Msa0104710:intron 20.0%
!! AAAGAAAAGATACTAAACAA+AGG - chr1_3:12850561-12850580 None:intergenic 20.0%
!!! TGTTTAGTATCTTTTCTTTT+TGG + chr1_3:12850562-12850581 Msa0104710:intron 20.0%
!!! CTTTTTTAGTATTTGTTTAC+TGG - chr1_3:12850795-12850814 None:intergenic 20.0%
!! AGTAAAATAAAAAATAGGGA+TGG + chr1_3:12850846-12850865 Msa0104710:intron 20.0%
!! GTAAAATAAAAAATAGGGAT+GGG + chr1_3:12850847-12850866 Msa0104710:intron 20.0%
!!! TGATAATTTTTTAACTACCT+TGG + chr1_3:12850998-12851017 Msa0104710:intron 20.0%
!!! TTTTACGTTTCTATTTTATG+GGG + chr1_3:12851278-12851297 Msa0104710:intron 20.0%
!! TAAATTTGACTATTGAACAA+TGG - chr1_3:12851381-12851400 None:intergenic 20.0%
!!! TCACTTAACCATTTTTTATA+TGG + chr1_3:12851734-12851753 Msa0104710:intron 20.0%
!!! CACTTAACCATTTTTTATAT+GGG + chr1_3:12851735-12851754 Msa0104710:intron 20.0%
!!! GTATTTTCCCATATAAAAAA+TGG - chr1_3:12851745-12851764 None:intergenic 20.0%
!!! TTGAATGAAATTTTGATTGA+AGG + chr1_3:12851772-12851791 Msa0104710:intron 20.0%
!!! TGAATGAAATTTTGATTGAA+GGG + chr1_3:12851773-12851792 Msa0104710:intron 20.0%
!! AAATTAAGTAAAAGAGATAG+TGG - chr1_3:12851832-12851851 None:intergenic 20.0%
!!! ATCTTGGAATTAATTTTGTT+CGG + chr1_3:12851951-12851970 Msa0104710:intron 20.0%
!!! CTTTTCTTCTTTTTAATCTA+AGG - chr1_3:12852371-12852390 None:intergenic 20.0%
!!! TACCAAATCTTTTAATTTTG+AGG + chr1_3:12852463-12852482 Msa0104710:intron 20.0%
!! ATTGTTTGTGTCTAAATTTA+AGG + chr1_3:12852708-12852727 Msa0104710:CDS 20.0%
!! ACTCAATCTTTTACAAAGTA+GGG - chr1_3:12848412-12848431 None:intergenic 25.0%
!! AACTCAATCTTTTACAAAGT+AGG - chr1_3:12848413-12848432 None:intergenic 25.0%
! TTAACAATAGATTGCACTAA+AGG + chr1_3:12848521-12848540 Msa0104710:intron 25.0%
!!! ATGTTTTTGACAGAGATAAA+AGG - chr1_3:12848706-12848725 None:intergenic 25.0%
! ATTGTGTGTGTCTAAATTTA+TGG + chr1_3:12848906-12848925 Msa0104710:CDS 25.0%
! AATCATTTGATGTTCTACAT+TGG - chr1_3:12848962-12848981 None:intergenic 25.0%
! TAATAAAGATTCTGCTTTGT+AGG - chr1_3:12849832-12849851 None:intergenic 25.0%
! TTCTAGATAAGTATTAAGGA+AGG - chr1_3:12849922-12849941 None:intergenic 25.0%
!! TTAATGATGGGAGATTTAAT+GGG - chr1_3:12850004-12850023 None:intergenic 25.0%
!! TTTAATGATGGGAGATTTAA+TGG - chr1_3:12850005-12850024 None:intergenic 25.0%
! CAAATATCCTCTTTAATGAT+GGG - chr1_3:12850016-12850035 None:intergenic 25.0%
! AATTGTATGAAGTGCAATAT+AGG + chr1_3:12850052-12850071 Msa0104710:intron 25.0%
! TAAGATAACAAGAGTTGAAT+CGG - chr1_3:12850261-12850280 None:intergenic 25.0%
!!! AAAAGCATTCTAATACATAG+TGG - chr1_3:12850437-12850456 None:intergenic 25.0%
! AGATTTATTCATTGTTAACG+AGG + chr1_3:12850511-12850530 Msa0104710:intron 25.0%
!!! TCTTTTTTTTAAGCGATAAG+TGG - chr1_3:12850762-12850781 None:intergenic 25.0%
! GACAATGCATAAAATATGTA+AGG + chr1_3:12850928-12850947 Msa0104710:intron 25.0%
!!! TAATTTTTTAACTACCTTGG+TGG + chr1_3:12851001-12851020 Msa0104710:intron 25.0%
!!! AATTTTTTAACTACCTTGGT+GGG + chr1_3:12851002-12851021 Msa0104710:intron 25.0%
!!! ATTTAAGTTCTAAAGCAGTA+TGG + chr1_3:12851396-12851415 Msa0104710:intron 25.0%
! ACTTTGTAAAACATTGAATC+CGG + chr1_3:12851559-12851578 Msa0104710:intron 25.0%
! TCTACTATGAAATTAGATAC+CGG - chr1_3:12851581-12851600 None:intergenic 25.0%
! AATCTAATAGAGCAATTAAG+GGG - chr1_3:12851658-12851677 None:intergenic 25.0%
! GAATCTAATAGAGCAATTAA+GGG - chr1_3:12851659-12851678 None:intergenic 25.0%
! AGAATCTAATAGAGCAATTA+AGG - chr1_3:12851660-12851679 None:intergenic 25.0%
!!! GAATGAAATTTTGATTGAAG+GGG + chr1_3:12851774-12851793 Msa0104710:intron 25.0%
!! GTGTGAGTGTTATAAATTTT+GGG + chr1_3:12851892-12851911 Msa0104710:intron 25.0%
!! TGTGAGTGTTATAAATTTTG+GGG + chr1_3:12851893-12851912 Msa0104710:intron 25.0%
! ATTCGATTCACACTAAAAAA+AGG + chr1_3:12851922-12851941 Msa0104710:intron 25.0%
!! TAAAAAAAGGTTTGAGATCT+TGG + chr1_3:12851935-12851954 Msa0104710:intron 25.0%
! AAGAAATAAAGTGAGAGAAA+AGG + chr1_3:12852123-12852142 Msa0104710:intron 25.0%
! ACAAAACTGACGTATTTAAA+GGG - chr1_3:12852171-12852190 None:intergenic 25.0%
! AACAAAACTGACGTATTTAA+AGG - chr1_3:12852172-12852191 None:intergenic 25.0%
!! TTTGTTGTCTGTGTATATAT+TGG - chr1_3:12852235-12852254 None:intergenic 25.0%
!! TTCTTCTTTTTAATCTAAGG+TGG - chr1_3:12852368-12852387 None:intergenic 25.0%
! CTCCTCAAAATTAAAAGATT+TGG - chr1_3:12852468-12852487 None:intergenic 25.0%
TTGTAAAAGATTGAGTTTGC+CGG + chr1_3:12848416-12848435 Msa0104710:intron 30.0%
TGTGTCTAAATTTATGGACA+TGG + chr1_3:12848912-12848931 Msa0104710:CDS 30.0%
TTTCTGCTGATGATTTACTA+TGG + chr1_3:12848983-12849002 Msa0104710:CDS 30.0%
ATTTACTATGGACGATGAAT+AGG + chr1_3:12848995-12849014 Msa0104710:CDS 30.0%
TTAACTTAGGTCATCATCAT+TGG - chr1_3:12849115-12849134 None:intergenic 30.0%
GTACCTATGAAATGCAATTA+TGG + chr1_3:12849148-12849167 Msa0104710:intron 30.0%
ACTCCATAATTGCATTTCAT+AGG - chr1_3:12849154-12849173 None:intergenic 30.0%
TCTAGAGATATTGTACATTG+AGG + chr1_3:12849704-12849723 Msa0104710:intron 30.0%
GCAGAATCTTTATTAGCAAA+AGG + chr1_3:12849837-12849856 Msa0104710:intron 30.0%
CTTTATTAGCAAAAGGATTG+TGG + chr1_3:12849844-12849863 Msa0104710:intron 30.0%
! TAATGATGGGAGATTTAATG+GGG - chr1_3:12850003-12850022 None:intergenic 30.0%
TAAATCTCCCATCATTAAAG+AGG + chr1_3:12850006-12850025 Msa0104710:intron 30.0%
CCAAATATCCTCTTTAATGA+TGG - chr1_3:12850017-12850036 None:intergenic 30.0%
CCATCATTAAAGAGGATATT+TGG + chr1_3:12850014-12850033 Msa0104710:intron 30.0%
TTCATACAATTAGAAACTGG+AGG - chr1_3:12850043-12850062 None:intergenic 30.0%
CACTTCATACAATTAGAAAC+TGG - chr1_3:12850046-12850065 None:intergenic 30.0%
ACATCAAATGATTCTCCTTA+TGG + chr1_3:12850086-12850105 Msa0104710:intron 30.0%
TTCAGAAAAATGTCTCCATA+AGG - chr1_3:12850104-12850123 None:intergenic 30.0%
!!! GAGACATTTTTCTGAAATAG+TGG + chr1_3:12850108-12850127 Msa0104710:intron 30.0%
!!! AATAGTGGTGTTGATTTTCT+TGG + chr1_3:12850123-12850142 Msa0104710:intron 30.0%
! AGATAGCTTTTGCAATGAAT+TGG + chr1_3:12850216-12850235 Msa0104710:intron 30.0%
GAAAAGATACTAAACAAAGG+AGG - chr1_3:12850558-12850577 None:intergenic 30.0%
! TTTTTAACATGTGCCCTTAA+GGG - chr1_3:12850604-12850623 None:intergenic 30.0%
! CATGCTACAATTTCTTTTTG+TGG - chr1_3:12850976-12850995 None:intergenic 30.0%
CACAAAAAGAAATTGTAGCA+TGG + chr1_3:12850974-12850993 Msa0104710:intron 30.0%
CTTTATAATTACAAGGGACA+TGG - chr1_3:12851034-12851053 None:intergenic 30.0%
AAATTCATCCTTTATACACG+TGG + chr1_3:12851225-12851244 Msa0104710:intron 30.0%
ATTTGACTATTGAACAATGG+TGG - chr1_3:12851378-12851397 None:intergenic 30.0%
ATTGCTCTATTAGATTCTCA+AGG + chr1_3:12851662-12851681 Msa0104710:intron 30.0%
! AAGAGATAGTGGTCAAATAT+GGG - chr1_3:12851821-12851840 None:intergenic 30.0%
! AAAGAGATAGTGGTCAAATA+TGG - chr1_3:12851822-12851841 None:intergenic 30.0%
! CGTGTGAGTGTTATAAATTT+TGG + chr1_3:12851891-12851910 Msa0104710:intron 30.0%
AAATAAAGTGAGAGAAAAGG+TGG + chr1_3:12852126-12852145 Msa0104710:intron 30.0%
AATAAAGTGAGAGAAAAGGT+GGG + chr1_3:12852127-12852146 Msa0104710:intron 30.0%
AGGTGGGTGAAAAAATAAAT+AGG + chr1_3:12852143-12852162 Msa0104710:intron 30.0%
CAAAACTGACGTATTTAAAG+GGG - chr1_3:12852170-12852189 None:intergenic 30.0%
! TCAGCTACAATGTTTTACAA+TGG - chr1_3:12852520-12852539 None:intergenic 30.0%
TTGTAAAACATTGTAGCTGA+AGG + chr1_3:12852520-12852539 Msa0104710:intron 30.0%
! AATAATCACTGATGATGCTA+AGG + chr1_3:12852675-12852694 Msa0104710:CDS 30.0%
TGTGTCTAAATTTAAGGACA+AGG + chr1_3:12852714-12852733 Msa0104710:CDS 30.0%
ATTCTCTTGATGTTCTACAT+TGG - chr1_3:12852764-12852783 None:intergenic 30.0%
ATTTACTATGGACGATGAAT+AGG + chr1_3:12848995-12849014 Msa0104710:CDS 30.0%
! AATGTTGTTGTTGTTGTTGG+TGG - chr1_3:12848746-12848765 None:intergenic 35.0%
! GTCAATGTTGTTGTTGTTGT+TGG - chr1_3:12848749-12848768 None:intergenic 35.0%
AACAACAACAACATTGACGT+TGG + chr1_3:12848751-12848770 Msa0104710:CDS 35.0%
CAACATTCAACTCCAACAAT+GGG + chr1_3:12848784-12848803 Msa0104710:CDS 35.0%
ACTCTTGTCACATGATTGAT+GGG - chr1_3:12848826-12848845 None:intergenic 35.0%
AATAATCACCGATGATGCTA+AGG + chr1_3:12848873-12848892 Msa0104710:CDS 35.0%
CATTAACTCCTTAGCATCAT+CGG - chr1_3:12848884-12848903 None:intergenic 35.0%
!! AGGAATTTGTTAGGTCTCTT+GGG + chr1_3:12849028-12849047 Msa0104710:CDS 35.0%
! TGATGATGACCTAAGTTAAG+TGG + chr1_3:12849116-12849135 Msa0104710:intron 35.0%
TATGGAGTAACTTCATGACT+TGG + chr1_3:12849166-12849185 Msa0104710:intron 35.0%
! TGTTATTTGGCGGATATCAA+GGG - chr1_3:12849577-12849596 None:intergenic 35.0%
!! TTGTTATTTGGCGGATATCA+AGG - chr1_3:12849578-12849597 None:intergenic 35.0%
GAAGCATGAAATCACAATGA+AGG - chr1_3:12849794-12849813 None:intergenic 35.0%
!!! TTGTAGGTTTTAGACACCAA+GGG - chr1_3:12849816-12849835 None:intergenic 35.0%
!!! TTTGTAGGTTTTAGACACCA+AGG - chr1_3:12849817-12849836 None:intergenic 35.0%
! TTACAAGCATTTTGTGTTCG+TGG - chr1_3:12849878-12849897 None:intergenic 35.0%
TGTATGAAGTGCAATATAGG+TGG + chr1_3:12850055-12850074 Msa0104710:intron 35.0%
GGAGAATCATTTGATGTTAG+AGG - chr1_3:12850083-12850102 None:intergenic 35.0%
!! GTTGATTTTCTTGGAGGATT+TGG + chr1_3:12850132-12850151 Msa0104710:intron 35.0%
CATTGCAAAAGCTATCTCAA+TGG - chr1_3:12850213-12850232 None:intergenic 35.0%
GAATTGGTCAAACCTTTAGT+TGG + chr1_3:12850232-12850251 Msa0104710:CDS 35.0%
TTGAATCGGTATCCAACTAA+AGG - chr1_3:12850247-12850266 None:intergenic 35.0%
! GTTTTCTTAGGAATTGACCA+AGG + chr1_3:12850476-12850495 Msa0104710:intron 35.0%
! AATCTAAAGTCAAGAAGCCT+TGG - chr1_3:12850496-12850515 None:intergenic 35.0%
AAGATACTAAACAAAGGAGG+AGG - chr1_3:12850555-12850574 None:intergenic 35.0%
! AATGCTAATTTGTGCCCTTA+AGG + chr1_3:12850587-12850606 Msa0104710:intron 35.0%
! ATGCTAATTTGTGCCCTTAA+GGG + chr1_3:12850588-12850607 Msa0104710:intron 35.0%
! GTTTTTAACATGTGCCCTTA+AGG - chr1_3:12850605-12850624 None:intergenic 35.0%
TGAGCTTAACTCAGTTGTTA+AGG + chr1_3:12850906-12850925 Msa0104710:intron 35.0%
CATAAAATATGTAAGGTCCG+AGG + chr1_3:12850935-12850954 Msa0104710:intron 35.0%
! GCTACAATTTCTTTTTGTGG+TGG - chr1_3:12850973-12850992 None:intergenic 35.0%
! TCTAATACGAGGTGTTATCT+CGG - chr1_3:12851071-12851090 None:intergenic 35.0%
! CGTTTCTATTTTATGGGGAA+AGG + chr1_3:12851283-12851302 Msa0104710:intron 35.0%
TTCATCTAACAACAACCGTT+CGG + chr1_3:12851432-12851451 Msa0104710:CDS 35.0%
! AGAGATAGTGGTCAAATATG+GGG - chr1_3:12851820-12851839 None:intergenic 35.0%
!!! CAAAGTTGTTTTTCTCACCA+TGG - chr1_3:12851993-12852012 None:intergenic 35.0%
! GTAGTCACATTTTTACAAGC+TGG + chr1_3:12852338-12852357 Msa0104710:intron 35.0%
! GCTACAATGTTTTACAATGG+AGG - chr1_3:12852517-12852536 None:intergenic 35.0%
TCATCAGTGATTATTGTGTC+TGG - chr1_3:12852670-12852689 None:intergenic 35.0%
TTTCCGCTGATGATTTACTA+TGG + chr1_3:12852785-12852804 Msa0104710:CDS 35.0%
! TGTTCTTGCGATAGTTTTTG+AGG - chr1_3:12852861-12852880 None:intergenic 35.0%
CAAAAACTATCGCAAGAACA+TGG + chr1_3:12852861-12852880 Msa0104710:CDS 35.0%
AATTGCTATGGTTAGCAGAG+GGG - chr1_3:12848333-12848352 None:intergenic 40.0%
GAATTGCTATGGTTAGCAGA+GGG - chr1_3:12848334-12848353 None:intergenic 40.0%
AACCATAGCAATTCGACACA+AGG + chr1_3:12848340-12848359 Msa0104710:CDS 40.0%
TTCCTTGTGTCGAATTGCTA+TGG - chr1_3:12848345-12848364 None:intergenic 40.0%
AATTCGACACAAGGAAACTC+TGG + chr1_3:12848349-12848368 Msa0104710:CDS 40.0%
CCATTGTTGGAGTTGAATGT+TGG - chr1_3:12848786-12848805 None:intergenic 40.0%
CCAACATTCAACTCCAACAA+TGG + chr1_3:12848783-12848802 Msa0104710:CDS 40.0%
GACTCTTGTCACATGATTGA+TGG - chr1_3:12848827-12848846 None:intergenic 40.0%
TCATCGGTGATTATTGTGTC+TGG - chr1_3:12848868-12848887 None:intergenic 40.0%
!! GATGTTCTACATTGGCTTGT+TGG - chr1_3:12848954-12848973 None:intergenic 40.0%
ACTATGGACGATGAATAGGT+TGG + chr1_3:12848999-12849018 Msa0104710:CDS 40.0%
CTATGGACGATGAATAGGTT+GGG + chr1_3:12849000-12849019 Msa0104710:CDS 40.0%
!! TGGGCTTTGAGGAATTTGTT+AGG + chr1_3:12849019-12849038 Msa0104710:CDS 40.0%
!! GAGGAATTTGTTAGGTCTCT+TGG + chr1_3:12849027-12849046 Msa0104710:CDS 40.0%
! TGTGGTTGCGATAGTTTTTG+AGG - chr1_3:12849059-12849078 None:intergenic 40.0%
CAAAAACTATCGCAACCACA+TGG + chr1_3:12849059-12849078 Msa0104710:CDS 40.0%
TGATGACCTAAGTTAAGTGG+CGG + chr1_3:12849119-12849138 Msa0104710:intron 40.0%
! TTTTACCCGCCACTTAACTT+AGG - chr1_3:12849128-12849147 None:intergenic 40.0%
TGGTTGTGTTGAATGCATGT+TGG + chr1_3:12849186-12849205 Msa0104710:intron 40.0%
!! CATTGAGGTCCTCTAGAATT+TGG + chr1_3:12849719-12849738 Msa0104710:intron 40.0%
!! GTGTTAGAGTGATGGTGTTT+TGG + chr1_3:12849755-12849774 Msa0104710:intron 40.0%
TTGTGATTTCATGCTTCCCT+TGG + chr1_3:12849797-12849816 Msa0104710:intron 40.0%
! AAGCATTTTGTGTTCGTGGT+AGG - chr1_3:12849874-12849893 None:intergenic 40.0%
!!! AGTGGTGTTGATTTTCTTGG+AGG + chr1_3:12850126-12850145 Msa0104710:intron 40.0%
TGGAGGATTTGGAGAGAATT+TGG + chr1_3:12850143-12850162 Msa0104710:intron 40.0%
GGAGGATTTGGAGAGAATTT+GGG + chr1_3:12850144-12850163 Msa0104710:intron 40.0%
CCTACTTTGCTGCATTATCA+GGG + chr1_3:12850178-12850197 Msa0104710:intron 40.0%
ATACTAAACAAAGGAGGAGG+AGG - chr1_3:12850552-12850571 None:intergenic 40.0%
! CATGCTAACTTGTGTCCTTA+GGG - chr1_3:12850689-12850708 None:intergenic 40.0%
! TCATGCTAACTTGTGTCCTT+AGG - chr1_3:12850690-12850709 None:intergenic 40.0%
GATAAGTGGTGCAATAAAGG+AGG - chr1_3:12850748-12850767 None:intergenic 40.0%
AGCGATAAGTGGTGCAATAA+AGG - chr1_3:12850751-12850770 None:intergenic 40.0%
ATCCTTTATACACGTGGACA+TGG + chr1_3:12851231-12851250 Msa0104710:intron 40.0%
! GAACGGTTGTTGTTAGATGA+AGG - chr1_3:12851433-12851452 None:intergenic 40.0%
! TCTCAAGGCATTATTAGCCT+CGG + chr1_3:12851677-12851696 Msa0104710:intron 40.0%
GGGCAAGAATGATCTAACTT+GGG + chr1_3:12851698-12851717 Msa0104710:intron 40.0%
ACTCTTGTCACATGACTGAT+GGG - chr1_3:12852628-12852647 None:intergenic 40.0%
TCAGTGATTATTGTGTCTGG+TGG - chr1_3:12852667-12852686 None:intergenic 40.0%
!! GATGTTCTACATTGGCTTGT+TGG - chr1_3:12848954-12848973 None:intergenic 40.0%
CGTCCATAGTAAATCATCAG+CGG - chr1_3:12848989-12849008 None:intergenic 40.0%
ACTATGGACGATGAATAGGT+TGG + chr1_3:12848999-12849018 Msa0104710:CDS 40.0%
CTATGGACGATGAATAGGTT+GGG + chr1_3:12849000-12849019 Msa0104710:CDS 40.0%
AACTATCGCAAGAACATGGA+TGG + chr1_3:12852865-12852884 Msa0104710:CDS 40.0%
ACTATCGCAAGAACATGGAT+GGG + chr1_3:12852866-12852885 Msa0104710:CDS 40.0%
TCAACGTTGGTCATCATCAT+TGG - chr1_3:12852917-12852936 None:intergenic 40.0%
CGAATTGCTATGGTTAGCAG+AGG - chr1_3:12848335-12848354 None:intergenic 45.0%
!! GGAGTTGAATGTTGGTTCTC+AGG - chr1_3:12848778-12848797 None:intergenic 45.0%
TCGGTGATTATTGTGTCTGG+TGG - chr1_3:12848865-12848884 None:intergenic 45.0%
TATGGACATGGTCACAAGTG+AGG + chr1_3:12848924-12848943 Msa0104710:CDS 45.0%
! GATGAATAGGTTGGGCTTTG+AGG + chr1_3:12849008-12849027 Msa0104710:CDS 45.0%
AACTATCGCAACCACATGGA+TGG + chr1_3:12849063-12849082 Msa0104710:CDS 45.0%
ACTATCGCAACCACATGGAT+GGG + chr1_3:12849064-12849083 Msa0104710:CDS 45.0%
GATGACCTAAGTTAAGTGGC+GGG + chr1_3:12849120-12849139 Msa0104710:intron 45.0%
! TATTTGGCGGATATCAAGGG+AGG - chr1_3:12849574-12849593 None:intergenic 45.0%
!! GAGGTCCTCTAGAATTTGGA+TGG + chr1_3:12849723-12849742 Msa0104710:intron 45.0%
!! GTCCTCTAGAATTTGGATGG+TGG + chr1_3:12849726-12849745 Msa0104710:intron 45.0%
CACCACCATCCAAATTCTAG+AGG - chr1_3:12849731-12849750 None:intergenic 45.0%
!! CTCTAGAATTTGGATGGTGG+TGG + chr1_3:12849729-12849748 Msa0104710:intron 45.0%
GCCTACTTTGCTGCATTATC+AGG + chr1_3:12850177-12850196 Msa0104710:intron 45.0%
! CCCTGATAATGCAGCAAAGT+AGG - chr1_3:12850181-12850200 None:intergenic 45.0%
CCTTGATACCTTGAAGTGTG+CGG + chr1_3:12850297-12850316 Msa0104710:CDS 45.0%
CATTTGTTCCGCACACTTCA+AGG - chr1_3:12850308-12850327 None:intergenic 45.0%
! ATTTCTTTTTGTGGTGGCCG+AGG - chr1_3:12850967-12850986 None:intergenic 45.0%
! AATACGAGGTGTTATCTCGG+TGG - chr1_3:12851068-12851087 None:intergenic 45.0%
GTCCATGTCCACGTGTATAA+AGG - chr1_3:12851236-12851255 None:intergenic 45.0%
! ACACGTGGACATGGACTAAT+AGG + chr1_3:12851240-12851259 Msa0104710:intron 45.0%
! CACGTGGACATGGACTAATA+GGG + chr1_3:12851241-12851260 Msa0104710:intron 45.0%
!! TTCTAAAGCAGTATGGAGCG+TGG + chr1_3:12851403-12851422 Msa0104710:intron 45.0%
! CTCAAGGCATTATTAGCCTC+GGG + chr1_3:12851678-12851697 Msa0104710:intron 45.0%
AGTTAGATCATTCTTGCCCG+AGG - chr1_3:12851697-12851716 None:intergenic 45.0%
CGGGCAAGAATGATCTAACT+TGG + chr1_3:12851697-12851716 Msa0104710:intron 45.0%
! AATGCCAGTGTTGTTGTTGG+TGG - chr1_3:12852554-12852573 None:intergenic 45.0%
ACCAACAACAACACTGGCAT+TGG + chr1_3:12852553-12852572 Msa0104710:CDS 45.0%
! TCCAATGCCAGTGTTGTTGT+TGG - chr1_3:12852557-12852576 None:intergenic 45.0%
CCATTGCTGGAGTTGAATGT+TGG - chr1_3:12852588-12852607 None:intergenic 45.0%
CCAACATTCAACTCCAGCAA+TGG + chr1_3:12852585-12852604 Msa0104710:CDS 45.0%
GACTCTTGTCACATGACTGA+TGG - chr1_3:12852629-12852648 None:intergenic 45.0%
TAAGGACAAGGTCACAAGTG+AGG + chr1_3:12852726-12852745 Msa0104710:CDS 45.0%
! GATGAATAGGTTGGGCTTTG+AGG + chr1_3:12849008-12849027 Msa0104710:CDS 45.0%
!! TGGGCTTTGAGGAACATGTT+CGG + chr1_3:12852821-12852840 Msa0104710:CDS 45.0%
AGGAACATGTTCGGTCTCTT+GGG + chr1_3:12852830-12852849 Msa0104710:CDS 45.0%
!! TAAAAAGTAAAATAAAAAAT+AGG + chr1_3:12850841-12850860 Msa0104710:intron 5.0%
!! AAAAAGTAAAATAAAAAATA+GGG + chr1_3:12850842-12850861 Msa0104710:intron 5.0%
TTCAACTCCAACAATGGGCG+AGG + chr1_3:12848789-12848808 Msa0104710:CDS 50.0%
TAGTACCTGACCCATCCATG+TGG - chr1_3:12849077-12849096 None:intergenic 50.0%
ATGGATGGGTCAGGTACTAG+TGG + chr1_3:12849078-12849097 Msa0104710:intron 50.0%
! GGTGGCTTGTGTTAGAGTGA+TGG + chr1_3:12849747-12849766 Msa0104710:intron 50.0%
! CCGCACACTTCAAGGTATCA+AGG - chr1_3:12850300-12850319 None:intergenic 50.0%
CTAAACAAAGGAGGAGGAGG+AGG - chr1_3:12850549-12850568 None:intergenic 50.0%
GTTCCTTAACATGCGCCCTA+AGG + chr1_3:12850671-12850690 Msa0104710:intron 50.0%
TGTCCTTAGGGCGCATGTTA+AGG - chr1_3:12850677-12850696 None:intergenic 50.0%
AAGGTCCGAGGTTCAAACCT+CGG + chr1_3:12850947-12850966 Msa0104710:intron 50.0%
GACATGGTTCAAACCCACCA+AGG - chr1_3:12851018-12851037 None:intergenic 50.0%
GAGCAGATCTGCGTATACCA+TGG + chr1_3:12851973-12851992 Msa0104710:intron 50.0%
GAGGAACATGTTCGGTCTCT+TGG + chr1_3:12852829-12852848 Msa0104710:CDS 50.0%
CAGAGCTTGAGTGTGCCGAA+CGG - chr1_3:12851450-12851469 None:intergenic 55.0%
ACCGCCACCAACAACAACAC+TGG + chr1_3:12852547-12852566 Msa0104710:CDS 55.0%
! GCCAGTGTTGTTGTTGGTGG+CGG - chr1_3:12852551-12852570 None:intergenic 55.0%
TTCAACTCCAGCAATGGCCG+AGG + chr1_3:12852591-12852610 Msa0104710:CDS 55.0%
GATGGGCATACGCACTTCCT+CGG - chr1_3:12848809-12848828 None:intergenic 55.0%
CGCAAGAACATGGATGGGTC+AGG + chr1_3:12852871-12852890 Msa0104710:CDS 55.0%
ATGGATGGGTCAGGTGCTAG+TGG + chr1_3:12852880-12852899 Msa0104710:CDS 55.0%
CGCACTTCCTCGCCCATTGT+TGG - chr1_3:12848799-12848818 None:intergenic 60.0%
CGCAACCACATGGATGGGTC+AGG + chr1_3:12849069-12849088 Msa0104710:CDS 60.0%
GGTGGCCGAGGTTTGAACCT+CGG - chr1_3:12850955-12850974 None:intergenic 60.0%
CGTTCGGCACACTCAAGCTC+TGG + chr1_3:12851448-12851467 Msa0104710:CDS 60.0%
CGCACTTCCTCGGCCATTGC+TGG - chr1_3:12852601-12852620 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 12848316 12852936 12848316 ID=Msa0104710;Name=Msa0104710
chr1_3 mRNA 12848316 12852936 12848316 ID=Msa0104710-mRNA-1;Parent=Msa0104710;Name=Msa0104710-mRNA-1;_AED=0.15;_eAED=0.26;_QI=0|0|0|0.83|0.4|0.16|6|0|323
chr1_3 exon 12848316 12848370 12848316 ID=Msa0104710-mRNA-1:exon:5051;Parent=Msa0104710-mRNA-1
chr1_3 exon 12848731 12848834 12848731 ID=Msa0104710-mRNA-1:exon:5052;Parent=Msa0104710-mRNA-1
chr1_3 exon 12848853 12849090 12848853 ID=Msa0104710-mRNA-1:exon:5053;Parent=Msa0104710-mRNA-1
chr1_3 exon 12850218 12850335 12850218 ID=Msa0104710-mRNA-1:exon:5054;Parent=Msa0104710-mRNA-1
chr1_3 exon 12851414 12851469 12851414 ID=Msa0104710-mRNA-1:exon:5055;Parent=Msa0104710-mRNA-1
chr1_3 exon 12852536 12852936 12852536 ID=Msa0104710-mRNA-1:exon:5056;Parent=Msa0104710-mRNA-1
chr1_3 CDS 12848316 12848370 12848316 ID=Msa0104710-mRNA-1:cds;Parent=Msa0104710-mRNA-1
chr1_3 CDS 12848731 12848834 12848731 ID=Msa0104710-mRNA-1:cds;Parent=Msa0104710-mRNA-1
chr1_3 CDS 12848853 12849090 12848853 ID=Msa0104710-mRNA-1:cds;Parent=Msa0104710-mRNA-1
chr1_3 CDS 12850218 12850335 12850218 ID=Msa0104710-mRNA-1:cds;Parent=Msa0104710-mRNA-1
chr1_3 CDS 12851414 12851469 12851414 ID=Msa0104710-mRNA-1:cds;Parent=Msa0104710-mRNA-1
chr1_3 CDS 12852536 12852936 12852536 ID=Msa0104710-mRNA-1:cds;Parent=Msa0104710-mRNA-1
Gene Sequence

>Msa0104710

ATGGAGCATGGAAGCCCCTCTGCTAACCATAGCAATTCGACACAAGGAAACTCTGCTAAAAGAAACACCACCAACAACAACAACAACATTGACGTTGGACCTGAGAACCAACATTCAACTCCAACAATGGGCGAGGAAGTGCGTATGCCCATCAATCATAGTGTTCTTCCACCAGACACAATAATCACCGATGATGCTAAGGAGTTAATGCAATTGTGTGTGTCTAAATTTATGGACATGGTCACAAGTGAGGCTTTCCAACAAGCCAATGTAGAACATCAAATGATTGTTTCTGCTGATGATTTACTATGGACGATGAATAGGTTGGGCTTTGAGGAATTTGTTAGGTCTCTTGGGAAAGACCTCAAAAACTATCGCAACCACATGGATGGGTCAGATAGCTTTTGCAATGAATTGGTCAAACCTTTAGTTGGATACCGATTCAACTCTTGTTATCTTAGCTTACAAGTCTCATGCCTTGATACCTTGAAGTGTGCGGAACAAATGATTCAACTTATGGAGCGTGGAAGTCCTTCATCTAACAACAACCGTTCGGCACACTCAAGCTCTGCTGAAGGAAACACCGCCACCAACAACAACACTGGCATTGGAACTGAGAACCAACATTCAACTCCAGCAATGGCCGAGGAAGTGCGTATGCCCATCAGTCATGTGACAAGAGTCATGCAGAATGTTCTTCCACCAGACACAATAATCACTGATGATGCTAAGGAGTTAATGCAATTGTTTGTGTCTAAATTTAAGGACAAGGTCACAAGTGAGGCTTTCCAACAAGCCAATGTAGAACATCAAGAGAATGTTTCCGCTGATGATTTACTATGGACGATGAATAGGTTGGGCTTTGAGGAACATGTTCGGTCTCTTGGGAAATACCTCAAAAACTATCGCAAGAACATGGATGGGTCAGGTGCTAGTGGCTCAAACAATGCCAATGATGATGACCAACGTTGA
Protein sequence

>Msa0104710

MEHGSPSANHSNSTQGNSAKRNTTNNNNNIDVGPENQHSTPTMGEEVRMPINHSVLPPDTIITDDAKELMQLCVSKFMDMVTSEAFQQANVEHQMIVSADDLLWTMNRLGFEEFVRSLGKDLKNYRNHMDGSDSFCNELVKPLVGYRFNSCYLSLQVSCLDTLKCAEQMIQLMERGSPSSNNNRSAHSSSAEGNTATNNNTGIGTENQHSTPAMAEEVRMPISHVTRVMQNVLPPDTIITDDAKELMQLFVSKFKDKVTSEAFQQANVEHQENVSADDLLWTMNRLGFEEHVRSLGKYLKNYRKNMDGSGASGSNNANDDDQR*