AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0104990


Find 506 sgRNAs with CRISPR-Local

Find 908 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-GE

Chromosome Type Strat End Strand Name
chr1_3 gene 13180262 13190709 13180262 ID=Msa0104990;Name=Msa0104990
chr1_3 mRNA 13180262 13190709 13180262 ID=Msa0104990-mRNA-1;Parent=Msa0104990;Name=Msa0104990-mRNA-1;_AED=0.07;_eAED=0.07;_QI=66|1|1|1|0.9|0.81|11|256|2026
chr1_3 exon 13180262 13180797 13180262 ID=Msa0104990-mRNA-1:exon:5205;Parent=Msa0104990-mRNA-1
chr1_3 exon 13180828 13184990 13180828 ID=Msa0104990-mRNA-1:exon:5206;Parent=Msa0104990-mRNA-1
chr1_3 exon 13187360 13187561 13187360 ID=Msa0104990-mRNA-1:exon:5207;Parent=Msa0104990-mRNA-1
chr1_3 exon 13187668 13187818 13187668 ID=Msa0104990-mRNA-1:exon:5208;Parent=Msa0104990-mRNA-1
chr1_3 exon 13187916 13187997 13187916 ID=Msa0104990-mRNA-1:exon:5209;Parent=Msa0104990-mRNA-1
chr1_3 exon 13188172 13188246 13188172 ID=Msa0104990-mRNA-1:exon:5210;Parent=Msa0104990-mRNA-1
chr1_3 exon 13188769 13188859 13188769 ID=Msa0104990-mRNA-1:exon:5211;Parent=Msa0104990-mRNA-1
chr1_3 exon 13189048 13189318 13189048 ID=Msa0104990-mRNA-1:exon:5212;Parent=Msa0104990-mRNA-1
chr1_3 exon 13189414 13189456 13189414 ID=Msa0104990-mRNA-1:exon:5213;Parent=Msa0104990-mRNA-1
chr1_3 exon 13189530 13189633 13189530 ID=Msa0104990-mRNA-1:exon:5214;Parent=Msa0104990-mRNA-1
chr1_3 exon 13190025 13190709 13190025 ID=Msa0104990-mRNA-1:exon:5215;Parent=Msa0104990-mRNA-1
chr1_3 five_prime_UTR 13180262 13180327 13180262 ID=Msa0104990-mRNA-1:five_prime_utr;Parent=Msa0104990-mRNA-1
chr1_3 CDS 13180328 13180797 13180328 ID=Msa0104990-mRNA-1:cds;Parent=Msa0104990-mRNA-1
chr1_3 CDS 13180828 13184990 13180828 ID=Msa0104990-mRNA-1:cds;Parent=Msa0104990-mRNA-1
chr1_3 CDS 13187360 13187561 13187360 ID=Msa0104990-mRNA-1:cds;Parent=Msa0104990-mRNA-1
chr1_3 CDS 13187668 13187818 13187668 ID=Msa0104990-mRNA-1:cds;Parent=Msa0104990-mRNA-1
chr1_3 CDS 13187916 13187997 13187916 ID=Msa0104990-mRNA-1:cds;Parent=Msa0104990-mRNA-1
chr1_3 CDS 13188172 13188246 13188172 ID=Msa0104990-mRNA-1:cds;Parent=Msa0104990-mRNA-1
chr1_3 CDS 13188769 13188859 13188769 ID=Msa0104990-mRNA-1:cds;Parent=Msa0104990-mRNA-1
chr1_3 CDS 13189048 13189318 13189048 ID=Msa0104990-mRNA-1:cds;Parent=Msa0104990-mRNA-1
chr1_3 CDS 13189414 13189456 13189414 ID=Msa0104990-mRNA-1:cds;Parent=Msa0104990-mRNA-1
chr1_3 CDS 13189530 13189633 13189530 ID=Msa0104990-mRNA-1:cds;Parent=Msa0104990-mRNA-1
chr1_3 CDS 13190025 13190453 13190025 ID=Msa0104990-mRNA-1:cds;Parent=Msa0104990-mRNA-1
chr1_3 three_prime_UTR 13190454 13190709 13190454 ID=Msa0104990-mRNA-1:three_prime_utr;Parent=Msa0104990-mRNA-1
Gene Sequence

>Msa0104990

ATGGATCAACACTTCCTCCACCATCAAGACCACCGTACAAGATACGCTCCTCCGATTCACCACCTTCCTCCACCACCTTCTCTTCCTCCTCCTCCTCAACCTCTCCTTTATCGTTCTTCTCTTCCTCCTCCACCCCCCTTTCATCAATCTCCTCAATTACATTTTTACCCCCTCGAACACCGCCGTATCCCCCCTCAACCCGCCTGGAACCCTAACCCCAATCCTGACGATCGATTCCGCGGTGATTCTCATCACCACCACCATCACCACCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTATCCACCTCTCCGATACGAATCTGAATCAAATCCTAACCCTAGGGAAACCTTCCTTTACACCGACAACGCCAATTTCCACCACCACCGTCAATTAGCCACAACCGCTTCCACATTGAATCATCCTTATCCTGAACGTGACGGTGTTTCCACCAGAATTGATTCAGCCAGAATTGATAACAGAAGGTGGTTGAATGAAAGAAAAGTACACAGTTCATCACCGTCTCATTCGCCTTTTGAATCGGTGAAGGATGAATTAAGTGCTTCTGTGAAACGTGATTATCGTGATTCTGAAACGGCTAGGTATAGTATTGGTAGTAATAGTGGTAGTAGAGGGAATAGCAGAGAGGGTAATCATTATAATCAGGGTCGTGAATTTAGTAGAACACCGCCGAAGAAACAGATTCAAAAGAAGAGTGCTTTACTTAGGATTCAGAATATGAAACCTAATCATAGGAACCGTGATGTTGAACAGTTACGTTATGTTAATGATTCTAATGGTAATTTCTTCAGGGGTAATGGGAAAGATCAACATGGAAGAGGGTACATGAAAGGTGAAGAGAGGAAAAAAGGAAGTCCTGTTGAAGTTGATGTTGATATTTCGTTTGAATCGAATGTTTTTGTTGCTAAGCATATTGTTACCGCAGCGCCTTCAACTTCCGGTGTTGATGTGGGTTTTGTTTCTGGTAAACTGTCTTCTGTTGTTCAAACTATGAATGATAATGATGCTTCACAAAAGAATGTAGGTGATGATTGTAATCCTAATGAGAAAAAAGAGGGGTTAATTTCTGTTGAAGCCAGTGGTACTCATACTCGTAAATTGGCATCCAAGGTTGTGAAGAAGAAGAAGGCTGTTTCTGGTGGTGAAAATTTGAATGCTAATAAGAATACTTTGGGGAAGAATGTAGGTGATGGCTGTAATTCGCATGGGAAAAATGAGGTGGGAGTTTCTGGTGAAGCTTGCGGTACTGGTCCTCGTAAATTGGCCTCTAAGGTTGTCAAGAAGAAGAAAAGTATTAAGAGAGTGGTGAAGAAAGGTTCTGCAAAGCCTAATAGTTCGGGCGTGTTGGCTCCACCTTCGGTTGCCAATGCAGTTGGTGAAACTGTGGTAGCAGATAGTGGGTCCAATGCTGCCACTGAAAATGTCAAAACGGGAACTTGTTTGGAGGAGAAAATCAATGCTGTTGATAAGGTGTCTGCGCCAGACGATCAAGGGAATGCATTGGCTGAAGATAAAAAGGAGGGGTTGTCCATGCCGAATTTGGGGCCAGAATGCAGGTCACAGGAATATAAGAACGACGGAGCTTCTGATATTGGGAAAGAATCCAGGTTTGAAAGAGGTGGAAGTATTTCAAATACACCATCTTGTGTTTCTAGTATTGTAGATAGAATTAGTGGTTCTGATTGTTTAGATGTGTGTAATTCTGTTCCTGACTTGGTTAGTGTGACACATATTGACAAGGCTACTAAGTTATTAAATGGAAGTACTTCTGAAATCAACCAATTAGATTGTGGGAACAAGCAATTGTGTCAGAGTGAAGTATCTCTATCGCCTGGGAAACATTTAGATGTAGGATGTTCATGGAATAGTAATCTTGTAGATGTAGGGAATGAAATGAATAACAATGTCATTTCTGCAGATATTATAAATACATATAATTCTGCTGATGACACTGTTTACGTCCTCAATTCCGGTGATCCTACAAGTTCAGGAAAGGAAACTACTAACAGTGGGAATAATGACATTGATGGAGAGGCTTATTGTGAAAAGATGGTTCCTGTGTTCAATCGGTGTTCTACTTCGGATGAAAATTCAGATATAGCCATCCCCCTGTCAAGCAGTGGAATGGTTGCTTTTTCGAGTTTAGGAGATACTAGGATTCAGGATGGTCAAGATTGCCTACAAAATACGAGTGTACTGATGCAGGGTTCTGATGTTGGATCGTCTAGTTTGGAAGAGTGTATCACTGTTCACCAATTTGGTATCATGAAGGATGCTGAAAAGCAGGTGTCCCCTGGTGAAGTCCCCATATCTGCTGAGAATTGTGACATAGATATAACATTTCCAAATTCTAATATTTCACTTGGATTCGATGTAAGGGACACAAGTAAGATAGAAAAGAAAGATGTTAAGACTGGTTTAAATGGTTTGACTTTGAATTTGGATGATATATCTCTTCCTCCAGTTAGCCATTCAAATGATGCTGATAGAGGCTCAAGAATTTTATCGAAGGATCCATGTTCTTCAGAAGGCTTAGATCATTCTATTCAAAGCCTGGATTTTTTCTCACTATCCAACCAGGTTGGGGACACAGCTTTACATGGGAAAAGAGCTTTTTCAGAGGCTGAATTTTGTTTTGCAAATAATGACAGTGATGATGAAAATAAGGTTTCACCAGTTCCTAAGAGGAAAAAAGTCACTGCTAGTCTCCCAAATTTAACTGAATTTCAATCTGAATTTAGTGATTCAGTTGCGGCTACCACATCTATTGCAGAAGTTCCTATCTGTTTCAGTGATAACCAAGAACATAAGAAAGACGACTTTGCATCGTCAAGCATGGGTATGAGTATTAAGTCTAATGCTCAGTCGATAACTTATTCAGGTGATACTGCTAAATTGTCTGACTGCATTTTCACCGGAGGATCATCTGAGTCTACGGATGCAAATAGGGAAACCAAGAGTTCTGAGCATTTGGAATTGGAGCACTCGGATATGGTCTCTACACAATGTGAGGACTTGGCCATTCCAAATGTTCAGTTTTCAGTGTTTGGCTGTGAGCGGAATGACAATGCTACTCCAATTGAGCATACAAGTAATATCACGGGAGAAAAGATAGATTCACAGGCTGCTGAAACCAATTACCATTATAGAGATGTTGTGCAAAGGTCTCCAAGGGCTGATATGCTATCTAATGATCTCGATAAGGGTGATTCACTTGCTCAGGAGAACCTTGTGTCCTGCCCTGCCAATGCTATTGGAGTCACTATCAGTAATTCAAATAATGAATTGATTGAGGATTTGCCTTATGCTTTATCGGATATGTATTCTCAAGGGATGGCATCTGACTTACCAGATAGAATGATTACTGAGTTTACAGCAACCGATGATGATGAAAACATTTGCGGGGATGAAGAAAATCCAAATAGCGTGTCTATGGTCAAACATGGTTCTGACTCAGATGCTTTTACTTCATCAAAACAGCATACTGAAACAATTAGGAAGTCAGATCATGCAATTGGATGTAGTGACCCAATACCAAGGAATATAACGCCAGAACCAGCCCAAGCTCATTCCAAAGTTCAACCTCTGGGTCTAAATTCATCTTGTTCTGAATTAAATGCAAGCAAAAATCTGCCAGGCAGTGTCATCCCTAAAGCTTTCAAGGGTTATTCTTTTCCTTTTCCAAAGTCGAAGACAAAGACTCCTGCCTCTTCAATCAATGCCTTAAAATCTCGAACTTGGCATCGGACAGATAATAAAAATCCTCCAGCTTCTCTACCTAGAGTCAAACTTTCAGCAGGAATAGTTCCTCCTAAAGGGCCAATTCTCGAAAAGAAGAACTTTCCAAATACTTCTTACATTCGTAAAGGTAACAGTCTTGTTAGGAATCCTACTCCAGTTGCTGCCGTACCTCAAATCTCCTCTTCAAGTCTCGCGAGGAGACCTACTCCAGTTTCTGCTATACCTCAAATCTCTACCAACCCACCATCTTTGGGTTTAGGCGAAACACCTAAGGGCACCAAACCTGAAAATATAGCTGTTTTGATAGATCAGCCAATCTATTCCAAAACATACGTGTCAAATACTCCTCTGCAGAGAACATCTCCTCTACATATTGACACCAAATCAGAGGAAAATATATCTTTCCCGTTGCTAGAACCTCCTTCCAGTGGCTTCTGTGAAAATGCATCTGATCTTGGGAAGTTTATTGAAACTAATGATGCACCAGCCTGCTCTGAAGATGTACCAAAACAATATGAAACTCCTGAAAATCAAACTGCTCCATCTAGCAATCGGGAGTGTCAAGATGAAGCAAATGTTGGATATAATTCTTCTTTGAACTCAAAAAGAATAGTTTATATAAAGCCTAAAACAAATCAATTGGTTGCAACTTCGACTTCTTCTGATATTATTGTCTCTACTGATGACAAAGGCCAAACGGCCATCCCTGATAGCTATTACAAGAAGAGAAAAAATCAATTGGTTAGGACTACATTTGAAAACCATGTCAACCAGACAGCTGCAACTCCCAATAACGTTGTGAATTCTGACGGCCAAGGGGATAGTAAAGTACTTCGCAATAGGAGGTTTTCCAAGAGGCGGTCGCATAAAGTAGCTGGTATTTCGAGCAAATCTTCAAGAGCCTCATTAGTGTGGACACTTGGTAGCAAAAATTCTTCTGGAAATGACAGGGACTCTAGGCATTATCAGAAGGTTTTACCACTCTTGTCTCCATGGAAAAGAACAACATATTTAAGAAGCTTCATTCATAATTCTGCTTCAAGCTTCAATAGTTGTTCCTTATCTGCAGTCGGTAAGAAATTGCTTCTGTTGAGAAAGAGGGATACTGTATACACCAGGTCGACCCGTGGGTTTTCTCTTTGGAAATCCAAAGTTTTAGGCATTGGTGGGTCTAGTTTAAAGTGGTCAAAATCTATCGAGAAGCACTCAAAGAAAGCTAATGAGGAAGCCACACTTGCTGTTGCTGCAGTTGAGAAGAAGAAGAGAGAGAAGAAAGACCCAGCTTGTGTTGGTCCTCAAACAAAGAGAGAACGTATATTTCGGGTTGGTTCAGTTCGATACAGAATGGATCCTTCCAGGCGGACACTTCAGAGGATTTCAGATGATGAATCCCTGTCCTCTGCCTCAATCGGTGCAAGTTTGGTTTCCAGAAGAGGTTACATTCCAAGGAGATTAGTGATAGGAAATGATGAATATGTTCGAATTGGCAACGGAAACCAACTTATCAGAGACCCAAAGAAACGAACTCGGAAATTGGCAATTGAAAAAGTTAGATGGAGCTTGCACACTGCCAGACAGCGGTTGGCTCGTAAGCAGAAGTACTGTCAGTTTTTCACAAGATTTGGGAAATGTAACAAGGATGGAGGGAAGTGTCCTTACATTCATGATCCCTCAAAAATTGCTGTCTGTACTAAGTTCCTGAATGGTTTATGTTCATCTCCAAACTGCAAATTGACTCATAAGGTTATTCCGGAGAGAATGCCTGATTGTTCATACTTTTTGCAAGGCTTATGCTCAAACGAAAACTGTCCATATAGACATGTCAATGTGAACCCAAAGGCATCTATTTGTGAAGGGTTTCTTAAGGGATATTGTGCTGATGGGAATGAGTGTCGGAAGAAGCACAGCTATGTCTGTCCAAGTTTTGACGCAACGGGAACCTGTACTCAAGGAAGCAAATGCAAGCTTCACCACCCGAAAAAACAAAGCAGGGGAAAGAAAAGAAAAAGATCAGGAGATCAGAACAACGGTAGAGGGCGTTACTTTGGTTCTATTCCCGTTGAAATTTCTGAACCTGGGATGATGGTCGCTCCAAGACATCCTCAACAGAGTGAGGAACATGAAGATGAACTAACCGACTACATCAGTCTTGATGTGTATGATGCGGAAGACACAGTTGACCAATCATTTGAGGCATCAACATTTTGTAACAATGATACCGTGGATCTTCAGTTGGATACTTCTGATGAACTCATTAGACCTGTTTCTATAATAGCAAAGTTTGCTTTGCAATCTCAGTCCAGAAGCCTGCAAACTTAG

Protein sequence

>Msa0104990

MDQHFLHHQDHRTRYAPPIHHLPPPPSLPPPPQPLLYRSSLPPPPPFHQSPQLHFYPLEHRRIPPQPAWNPNPNPDDRFRGDSHHHHHHHPPPPPPPPPPYPPLRYESESNPNPRETFLYTDNANFHHHRQLATTASTLNHPYPERDGVSTRIDSARIDNRRWLNERKVHSSSPSHSPFESVKDELSASVKRDYRDSETARYSIGSNSGSRGNSREGNHYNQGREFSRTPPKKQIQKKSALLRIQNMKPNHRNRDVEQLRYVNDSNGNFFRGNGKDQHGRGYMKGEERKKGSPVEVDVDISFESNVFVAKHIVTAAPSTSGVDVGFVSGKLSSVVQTMNDNDASQKNVGDDCNPNEKKEGLISVEASGTHTRKLASKVVKKKKAVSGGENLNANKNTLGKNVGDGCNSHGKNEVGVSGEACGTGPRKLASKVVKKKKSIKRVVKKGSAKPNSSGVLAPPSVANAVGETVVADSGSNAATENVKTGTCLEEKINAVDKVSAPDDQGNALAEDKKEGLSMPNLGPECRSQEYKNDGASDIGKESRFERGGSISNTPSCVSSIVDRISGSDCLDVCNSVPDLVSVTHIDKATKLLNGSTSEINQLDCGNKQLCQSEVSLSPGKHLDVGCSWNSNLVDVGNEMNNNVISADIINTYNSADDTVYVLNSGDPTSSGKETTNSGNNDIDGEAYCEKMVPVFNRCSTSDENSDIAIPLSSSGMVAFSSLGDTRIQDGQDCLQNTSVLMQGSDVGSSSLEECITVHQFGIMKDAEKQVSPGEVPISAENCDIDITFPNSNISLGFDVRDTSKIEKKDVKTGLNGLTLNLDDISLPPVSHSNDADRGSRILSKDPCSSEGLDHSIQSLDFFSLSNQVGDTALHGKRAFSEAEFCFANNDSDDENKVSPVPKRKKVTASLPNLTEFQSEFSDSVAATTSIAEVPICFSDNQEHKKDDFASSSMGMSIKSNAQSITYSGDTAKLSDCIFTGGSSESTDANRETKSSEHLELEHSDMVSTQCEDLAIPNVQFSVFGCERNDNATPIEHTSNITGEKIDSQAAETNYHYRDVVQRSPRADMLSNDLDKGDSLAQENLVSCPANAIGVTISNSNNELIEDLPYALSDMYSQGMASDLPDRMITEFTATDDDENICGDEENPNSVSMVKHGSDSDAFTSSKQHTETIRKSDHAIGCSDPIPRNITPEPAQAHSKVQPLGLNSSCSELNASKNLPGSVIPKAFKGYSFPFPKSKTKTPASSINALKSRTWHRTDNKNPPASLPRVKLSAGIVPPKGPILEKKNFPNTSYIRKGNSLVRNPTPVAAVPQISSSSLARRPTPVSAIPQISTNPPSLGLGETPKGTKPENIAVLIDQPIYSKTYVSNTPLQRTSPLHIDTKSEENISFPLLEPPSSGFCENASDLGKFIETNDAPACSEDVPKQYETPENQTAPSSNRECQDEANVGYNSSLNSKRIVYIKPKTNQLVATSTSSDIIVSTDDKGQTAIPDSYYKKRKNQLVRTTFENHVNQTAATPNNVVNSDGQGDSKVLRNRRFSKRRSHKVAGISSKSSRASLVWTLGSKNSSGNDRDSRHYQKVLPLLSPWKRTTYLRSFIHNSASSFNSCSLSAVGKKLLLLRKRDTVYTRSTRGFSLWKSKVLGIGGSSLKWSKSIEKHSKKANEEATLAVAAVEKKKREKKDPACVGPQTKRERIFRVGSVRYRMDPSRRTLQRISDDESLSSASIGASLVSRRGYIPRRLVIGNDEYVRIGNGNQLIRDPKKRTRKLAIEKVRWSLHTARQRLARKQKYCQFFTRFGKCNKDGGKCPYIHDPSKIAVCTKFLNGLCSSPNCKLTHKVIPERMPDCSYFLQGLCSNENCPYRHVNVNPKASICEGFLKGYCADGNECRKKHSYVCPSFDATGTCTQGSKCKLHHPKKQSRGKKRKRSGDQNNGRGRYFGSIPVEISEPGMMVAPRHPQQSEEHEDELTDYISLDVYDAEDTVDQSFEASTFCNNDTVDLQLDTSDELIRPVSIIAKFALQSQSRSLQT*