Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0105080 | XP_013466478.1 | 98.476 | 328 | 5 | 0 | 1 | 328 | 1 | 328 | 0.0 | 674 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0105080 | sp|Q9XHZ8|Y1178_ARATH | 71.341 | 328 | 90 | 1 | 1 | 328 | 1 | 324 | 0.0 | 506 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0105080 | A0A072VES8 | 98.476 | 328 | 5 | 0 | 1 | 328 | 1 | 328 | 0.0 | 674 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0105080 | TR | TRAF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0105080 | MtrunA17_Chr1g0159831 | 97.879 | 330 | 5 | 1 | 1 | 328 | 1 | 330 | 0.0 | 669 |
| Msa0105080 | MtrunA17_Chr3g0124921 | 72.561 | 328 | 83 | 4 | 1 | 326 | 1 | 323 | 5.94e-176 | 490 |
| Msa0105080 | MtrunA17_Chr3g0103031 | 50.453 | 331 | 158 | 3 | 1 | 328 | 1 | 328 | 8.23e-119 | 345 |
| Msa0105080 | MtrunA17_Chr5g0447111 | 44.308 | 325 | 176 | 3 | 5 | 328 | 9 | 329 | 5.03e-98 | 292 |
| Msa0105080 | MtrunA17_Chr5g0447191 | 39.572 | 187 | 109 | 2 | 140 | 324 | 3 | 187 | 1.43e-41 | 143 |
| Msa0105080 | MtrunA17_Chr4g0029841 | 30.723 | 166 | 107 | 2 | 160 | 325 | 122 | 279 | 9.21e-21 | 90.5 |
| Msa0105080 | MtrunA17_Chr7g0259501 | 29.448 | 163 | 102 | 3 | 142 | 291 | 182 | 344 | 4.82e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0105080 | AT1G21780.2 | 71.341 | 328 | 90 | 1 | 1 | 328 | 1 | 324 | 0.0 | 506 |
| Msa0105080 | AT1G21780.1 | 71.341 | 328 | 90 | 1 | 1 | 328 | 1 | 324 | 0.0 | 506 |
| Msa0105080 | AT1G55760.1 | 47.590 | 332 | 165 | 5 | 1 | 328 | 1 | 327 | 7.04e-109 | 320 |
| Msa0105080 | AT2G39760.4 | 30.719 | 153 | 95 | 1 | 150 | 291 | 179 | 331 | 2.82e-13 | 70.1 |
| Msa0105080 | AT2G39760.3 | 30.719 | 153 | 95 | 1 | 150 | 291 | 179 | 331 | 2.82e-13 | 70.1 |
| Msa0105080 | AT2G39760.2 | 30.719 | 153 | 95 | 1 | 150 | 291 | 179 | 331 | 3.05e-13 | 70.1 |
| Msa0105080 | AT2G39760.1 | 30.719 | 153 | 95 | 1 | 150 | 291 | 179 | 331 | 6.61e-13 | 69.3 |
Find 86 sgRNAs with CRISPR-Local
Find 319 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCCTTTCAAACTTGGTATT+TGG | 0.128764 | 1_3:+13354844 | Msa0105080:CDS |
| CGCAACCTCTCCTGTGTTTC+AGG | 0.153472 | 1_3:+13358016 | Msa0105080:CDS |
| CAATAAAACCCGAAGATTTC+TGG | 0.200729 | 1_3:+13358141 | Msa0105080:CDS |
| TTCAAGAAGTGCTTACAATT+TGG | 0.210270 | 1_3:+13358423 | Msa0105080:CDS |
| AGTGCTTACAATTTGGAAAT+AGG | 0.211006 | 1_3:+13358430 | Msa0105080:CDS |
| TATAAGTGGCAAGTTGATTT+TGG | 0.240197 | 1_3:+13358630 | Msa0105080:three_prime_UTR |
| TTGTATCTTGTAGTATGATA+TGG | 0.246533 | 1_3:+13358482 | Msa0105080:three_prime_UTR |
| TTCGCATTCTTATTTGATTT+CGG | 0.290853 | 1_3:+13358326 | Msa0105080:CDS |
| TGAACCTTCGCGTGTTTCTA+AGG | 0.294946 | 1_3:+13355002 | Msa0105080:CDS |
| CTGTGCTTCCAGAAATCTTC+GGG | 0.311859 | 1_3:-13358149 | None:intergenic |
| CCAGACAGATACATGTTTGT+TGG | 0.357022 | 1_3:-13354660 | None:intergenic |
| TTTACTTTGTATTATGGTAC+TGG | 0.371005 | 1_3:+13358526 | Msa0105080:three_prime_UTR |
| TTAGAAACACGCGAAGGTTC+AGG | 0.373550 | 1_3:-13355000 | None:intergenic |
| AGAAGAAGAAGAAGCAGTAT+TGG | 0.384918 | 1_3:-13355061 | None:intergenic |
| AAGCACAGGCTGGCTTTGCT+TGG | 0.389834 | 1_3:+13358164 | Msa0105080:CDS |
| TCAAACTTGGTATTTGGAAC+TGG | 0.400132 | 1_3:+13354850 | Msa0105080:CDS |
| CAATTTCCCGATTAGCTCAA+TGG | 0.401221 | 1_3:+13354781 | Msa0105080:CDS |
| AAATCAGACCCTTTCAAACT+TGG | 0.408826 | 1_3:+13354837 | Msa0105080:CDS |
| CGAAGAATGAAACGAGCAAT+AGG | 0.409761 | 1_3:-13355033 | None:intergenic |
| CCTGTGCTTCCAGAAATCTT+CGG | 0.410951 | 1_3:-13358150 | None:intergenic |
| CTTTCTTCAACTTGTGCAGC+TGG | 0.413291 | 1_3:-13358298 | None:intergenic |
| CATTTGACATCTTAACAGAT+AGG | 0.422641 | 1_3:-13358591 | None:intergenic |
| ATTTGTCGATAGAGAGAAAC+AGG | 0.424241 | 1_3:+13354956 | Msa0105080:CDS |
| GAACCTGTGATGACTTTGTC+TGG | 0.430022 | 1_3:+13357482 | Msa0105080:CDS |
| AGGGGAAATGTAAAATTTGC+GGG | 0.434591 | 1_3:-13355088 | None:intergenic |
| TCTGGTCTAGTGCGTTAGGT+TGG | 0.440571 | 1_3:+13354678 | Msa0105080:five_prime_UTR |
| TTGTTATTTAGTTATATAAG+TGG | 0.456748 | 1_3:+13358616 | Msa0105080:three_prime_UTR |
| AACCGCAGATGGCACACTTA+AGG | 0.459877 | 1_3:+13357974 | Msa0105080:CDS |
| GTTATGTCATTGAACTATAT+AGG | 0.461259 | 1_3:+13358452 | Msa0105080:three_prime_UTR |
| TTCCAAATACCAAGTTTGAA+AGG | 0.463827 | 1_3:-13354846 | None:intergenic |
| TGATACGAGGCCTGAAACAC+AGG | 0.466490 | 1_3:-13358026 | None:intergenic |
| TCCAAATACCAAGTTTGAAA+GGG | 0.471833 | 1_3:-13354845 | None:intergenic |
| ATCAGATGGCCATATGGAAC+TGG | 0.471880 | 1_3:-13357862 | None:intergenic |
| CTGGTCTAGTGCGTTAGGTT+GGG | 0.481494 | 1_3:+13354679 | Msa0105080:five_prime_UTR |
| TCGAGAGGCTTAATGAGGCC+TGG | 0.483089 | 1_3:+13358270 | Msa0105080:CDS |
| CCTGTGGATACTACATTCCT+TGG | 0.490016 | 1_3:+13357505 | Msa0105080:CDS |
| GTATCTCAGAAGGGCCGTGC+AGG | 0.498716 | 1_3:-13358108 | None:intergenic |
| CCGAGTTAAGATCTTCAAGT+AGG | 0.498960 | 1_3:-13358238 | None:intergenic |
| TCTGTCTGGTCTAGTGCGTT+AGG | 0.502496 | 1_3:+13354674 | Msa0105080:five_prime_UTR |
| AGATTTCTGGAAGCACAGGC+TGG | 0.511646 | 1_3:+13358154 | Msa0105080:CDS |
| CAATGGAAAATCGACAACTT+TGG | 0.515182 | 1_3:+13354798 | Msa0105080:CDS |
| CTTGTGACATGTCTTCTATG+TGG | 0.517852 | 1_3:-13358082 | None:intergenic |
| CCAACAAACATGTATCTGTC+TGG | 0.518769 | 1_3:+13354660 | Msa0105080:five_prime_UTR |
| GTAATACTACAGTTCATGAA+AGG | 0.521613 | 1_3:+13357452 | Msa0105080:intron |
| CAGGGGAAATGTAAAATTTG+CGG | 0.522009 | 1_3:-13355089 | None:intergenic |
| CCTACTTGAAGATCTTAACT+CGG | 0.524632 | 1_3:+13358238 | Msa0105080:CDS |
| CCGAAGATTTCTGGAAGCAC+AGG | 0.532000 | 1_3:+13358150 | Msa0105080:CDS |
| TTCCATACATGTATCTCAGA+AGG | 0.534119 | 1_3:-13358118 | None:intergenic |
| GTGGAGACGCCAGTTCCATA+TGG | 0.542653 | 1_3:+13357853 | Msa0105080:CDS |
| CTGAAACACAGGAGAGGTTG+CGG | 0.553064 | 1_3:-13358015 | None:intergenic |
| CAGCTGCACAAGTTGAAGAA+AGG | 0.554405 | 1_3:+13358299 | Msa0105080:CDS |
| GCCCTTCTGAGATACATGTA+TGG | 0.555410 | 1_3:+13358116 | Msa0105080:CDS |
| AGTTCCATATGGCCATCTGA+TGG | 0.557376 | 1_3:+13357864 | Msa0105080:CDS |
| ACAAAACATGGGAGATTCGA+AGG | 0.560639 | 1_3:+13354752 | Msa0105080:exon |
| CAAGCATACGAGAGAGGCAT+CGG | 0.563620 | 1_3:-13357920 | None:intergenic |
| TAATACTACAGTTCATGAAA+GGG | 0.564315 | 1_3:+13357453 | Msa0105080:intron |
| AAACAAAACAAAACAAAACA+TGG | 0.565821 | 1_3:+13354740 | Msa0105080:exon |
| TCTGATTTCTTGTACGAACA+AGG | 0.568056 | 1_3:-13354822 | None:intergenic |
| TGATGACTTTGTCTGGCCTG+TGG | 0.574666 | 1_3:+13357489 | Msa0105080:CDS |
| AATTAGAGACTCACATTCAG+AGG | 0.576553 | 1_3:-13357571 | None:intergenic |
| AGAGACTCACATTCAGAGGA+TGG | 0.576688 | 1_3:-13357567 | None:intergenic |
| CTCACTATTATAACCGCAGA+TGG | 0.582345 | 1_3:+13357963 | Msa0105080:CDS |
| ACAGATAGGTTGTTGAGAGA+CGG | 0.588723 | 1_3:-13358577 | None:intergenic |
| CATTCAGAGGATGGATCTTG+AGG | 0.589078 | 1_3:-13357558 | None:intergenic |
| CATCAATAATCAAGCGACCA+AGG | 0.591316 | 1_3:-13357522 | None:intergenic |
| CTTGTGCAGCTGGTACAACC+AGG | 0.594842 | 1_3:-13358288 | None:intergenic |
| GTGAACGGTGCATACCAGCT+TGG | 0.595643 | 1_3:+13354595 | Msa0105080:five_prime_UTR |
| CTACTTGAAGATCTTAACTC+GGG | 0.596940 | 1_3:+13358239 | Msa0105080:CDS |
| CCAAGGAATGTAGTATCCAC+AGG | 0.598731 | 1_3:-13357505 | None:intergenic |
| TGTTCTCGAGAGGCTTAATG+AGG | 0.608295 | 1_3:+13358265 | Msa0105080:CDS |
| TGATCTCAAAGACGCATGCG+AGG | 0.608738 | 1_3:+13358211 | Msa0105080:CDS |
| TTCACTGCTGCTGTGATACG+AGG | 0.620310 | 1_3:-13358039 | None:intergenic |
| AGGCCAGACAAAGTCATCAC+AGG | 0.625083 | 1_3:-13357485 | None:intergenic |
| ATGGACTTAACTTGAGTGAA+CGG | 0.627013 | 1_3:+13354580 | None:intergenic |
| AGCCTTAAGTGTGCCATCTG+CGG | 0.628227 | 1_3:-13357976 | None:intergenic |
| CTTTGTCAAGCATACGAGAG+AGG | 0.628419 | 1_3:-13357926 | None:intergenic |
| AGAATGAAACGAGCAATAGG+AGG | 0.635724 | 1_3:-13355030 | None:intergenic |
| AACAAAACAAAACAAAACAT+GGG | 0.638409 | 1_3:+13354741 | Msa0105080:exon |
| TCCATACATGTATCTCAGAA+GGG | 0.640688 | 1_3:-13358117 | None:intergenic |
| ACTCGGGAAATGTTCTCGAG+AGG | 0.641157 | 1_3:+13358255 | Msa0105080:CDS |
| GCAGCTAATAAGTACGACAT+CGG | 0.686940 | 1_3:+13358188 | Msa0105080:CDS |
| CATCTGCGGTTATAATAGTG+AGG | 0.691773 | 1_3:-13357962 | None:intergenic |
| CGAGGCCTGAAACACAGGAG+AGG | 0.710966 | 1_3:-13358021 | None:intergenic |
| CATGTCACAAGAATCCTGCA+CGG | 0.721067 | 1_3:+13358094 | Msa0105080:CDS |
| GGAAATGTAAAATTTGCGGG+AGG | 0.721522 | 1_3:-13355085 | None:intergenic |
| TGTTCCTTAGAAACACGCGA+AGG | 0.729696 | 1_3:-13355006 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCTTTATAATGTAAAAAAA+TGG | + | chr1_3:13356671-13356690 | Msa0105080:intron | 10.0% |
| !! | TCTTTATAATGTAAAAAAAT+GGG | + | chr1_3:13356672-13356691 | Msa0105080:intron | 10.0% |
| !! | TTTATATTTAAATAGAGAAT+TGG | + | chr1_3:13357063-13357082 | Msa0105080:intron | 10.0% |
| !!! | ATTATACTATGTTGAATTTT+TGG | + | chr1_3:13354901-13354920 | Msa0105080:intron | 15.0% |
| !!! | TTATACTATGTTGAATTTTT+GGG | + | chr1_3:13354902-13354921 | Msa0105080:intron | 15.0% |
| !! | ATGAAAATTATTTGTCAATT+TGG | + | chr1_3:13355466-13355485 | Msa0105080:intron | 15.0% |
| !! | ATAAAAAAAACTACAATGTT+GGG | - | chr1_3:13357140-13357159 | None:intergenic | 15.0% |
| !!! | ACTTATTTTTTGCAAATTTA+AGG | - | chr1_3:13357357-13357376 | None:intergenic | 15.0% |
| !!! | TTGTTATTTAGTTATATAAG+TGG | + | chr1_3:13358616-13358635 | Msa0105080:three_prime_UTR | 15.0% |
| !! | AAACAAAACAAAACAAAACA+TGG | + | chr1_3:13354740-13354759 | Msa0105080:exon | 20.0% |
| !! | AACAAAACAAAACAAAACAT+GGG | + | chr1_3:13354741-13354760 | Msa0105080:exon | 20.0% |
| !!! | ATTTGAAATACTAATAGAGT+CGG | + | chr1_3:13355331-13355350 | Msa0105080:intron | 20.0% |
| !!! | CTTTTGTTAATAAGAAGTTT+AGG | + | chr1_3:13355525-13355544 | Msa0105080:intron | 20.0% |
| !!! | ATAAATTTTGAGAACTAGAT+TGG | + | chr1_3:13356149-13356168 | Msa0105080:intron | 20.0% |
| !! | TAATTAAAGGTTCTTATTGT+AGG | + | chr1_3:13356341-13356360 | Msa0105080:intron | 20.0% |
| !! | AATTAAAGGTTCTTATTGTA+GGG | + | chr1_3:13356342-13356361 | Msa0105080:intron | 20.0% |
| !! | TTTGTTAACAATCTAAATGA+TGG | + | chr1_3:13356594-13356613 | Msa0105080:intron | 20.0% |
| !! | GTAAGATCTAAACAATATTA+TGG | - | chr1_3:13356932-13356951 | None:intergenic | 20.0% |
| !! | GATAAAAAAAACTACAATGT+TGG | - | chr1_3:13357141-13357160 | None:intergenic | 20.0% |
| !! | TATAGATATATGCTACTATA+TGG | + | chr1_3:13357260-13357279 | Msa0105080:intron | 20.0% |
| !! | TTAGTAAACAAAAGTAAAGA+GGG | - | chr1_3:13357287-13357306 | None:intergenic | 20.0% |
| !! | TTTAGTAAACAAAAGTAAAG+AGG | - | chr1_3:13357288-13357307 | None:intergenic | 20.0% |
| !! | TGATGTAACTAGATATAATA+TGG | + | chr1_3:13357630-13357649 | Msa0105080:intron | 20.0% |
| !! | ACAAATAGATAGTTATAGAA+CGG | - | chr1_3:13357683-13357702 | None:intergenic | 20.0% |
| !!! | ATTGTTTTGAGTTACTTAAT+AGG | + | chr1_3:13357718-13357737 | Msa0105080:intron | 20.0% |
| !!! | CATGTTTTTACTTTGTATTA+TGG | + | chr1_3:13358520-13358539 | Msa0105080:three_prime_UTR | 20.0% |
| !!! | GTTTTGTTTTGTTTTGTTTC+AGG | - | chr1_3:13354739-13354758 | None:intergenic | 25.0% |
| !!! | TTTACTATGTTGTTGTTTTC+AGG | + | chr1_3:13354932-13354951 | Msa0105080:intron | 25.0% |
| !! | AGTGTCTCATTAGTTTATAA+AGG | + | chr1_3:13355252-13355271 | Msa0105080:intron | 25.0% |
| !! | TTTGAAATACTAATAGAGTC+GGG | + | chr1_3:13355332-13355351 | Msa0105080:intron | 25.0% |
| ! | TAACTCATCTTTACAAAAAC+CGG | - | chr1_3:13355444-13355463 | None:intergenic | 25.0% |
| ! | ATTCTCTAAACTATCATTAG+TGG | - | chr1_3:13356059-13356078 | None:intergenic | 25.0% |
| ! | AATGATAGTTTAGAGAATGA+AGG | + | chr1_3:13356061-13356080 | Msa0105080:intron | 25.0% |
| !!! | AGAATGAAGGTTTTTTATGA+CGG | + | chr1_3:13356074-13356093 | Msa0105080:intron | 25.0% |
| ! | AAAAGGAAAGACAATAAAAC+AGG | - | chr1_3:13356197-13356216 | None:intergenic | 25.0% |
| ! | GAGTAAAGTGTGATAATTAA+AGG | + | chr1_3:13356328-13356347 | Msa0105080:intron | 25.0% |
| !!! | TTTAGATTATTTTTCCCCAT+TGG | + | chr1_3:13356377-13356396 | Msa0105080:intron | 25.0% |
| ! | TAAAGGATTAAAGAACCAAT+GGG | - | chr1_3:13356395-13356414 | None:intergenic | 25.0% |
| !! | ATTGGTTCTTTAATCCTTTA+GGG | + | chr1_3:13356395-13356414 | Msa0105080:intron | 25.0% |
| !! | TATTGAATGGAATGCATTTT+AGG | + | chr1_3:13356542-13356561 | Msa0105080:intron | 25.0% |
| ! | GATTGTTAACAAACAACAAT+AGG | - | chr1_3:13356587-13356606 | None:intergenic | 25.0% |
| ! | TGTACATACACTACAAAATT+AGG | + | chr1_3:13357037-13357056 | Msa0105080:intron | 25.0% |
| !!! | ATTAGCTCTGTATTTATTGT+CGG | - | chr1_3:13357322-13357341 | None:intergenic | 25.0% |
| ! | TAATACTACAGTTCATGAAA+GGG | + | chr1_3:13357453-13357472 | Msa0105080:intron | 25.0% |
| !! | TTCGCATTCTTATTTGATTT+CGG | + | chr1_3:13358326-13358345 | Msa0105080:CDS | 25.0% |
| ! | GTTATGTCATTGAACTATAT+AGG | + | chr1_3:13358452-13358471 | Msa0105080:three_prime_UTR | 25.0% |
| ! | TTGTATCTTGTAGTATGATA+TGG | + | chr1_3:13358482-13358501 | Msa0105080:three_prime_UTR | 25.0% |
| ! | TTTACTTTGTATTATGGTAC+TGG | + | chr1_3:13358526-13358545 | Msa0105080:three_prime_UTR | 25.0% |
| TCCAAATACCAAGTTTGAAA+GGG | - | chr1_3:13354848-13354867 | None:intergenic | 30.0% | |
| TTCCAAATACCAAGTTTGAA+AGG | - | chr1_3:13354849-13354868 | None:intergenic | 30.0% | |
| AAGAGATAACATACTAACCA+GGG | - | chr1_3:13355110-13355129 | None:intergenic | 30.0% | |
| TAAGAGATAACATACTAACC+AGG | - | chr1_3:13355111-13355130 | None:intergenic | 30.0% | |
| AGACACTCTTTAATCAATGT+GGG | - | chr1_3:13355239-13355258 | None:intergenic | 30.0% | |
| AAAGGAGTAAACCATCAAAT+TGG | + | chr1_3:13355270-13355289 | Msa0105080:intron | 30.0% | |
| !! | TAAACCATCAAATTGGTCTT+TGG | + | chr1_3:13355277-13355296 | Msa0105080:intron | 30.0% |
| !! | AAACCATCAAATTGGTCTTT+GGG | + | chr1_3:13355278-13355297 | Msa0105080:intron | 30.0% |
| AATCCTACTAGTAAAACTCA+AGG | - | chr1_3:13355496-13355515 | None:intergenic | 30.0% | |
| AATAAGAAGTTTAGGTGAGT+TGG | + | chr1_3:13355533-13355552 | Msa0105080:intron | 30.0% | |
| ATAAGAAGTTTAGGTGAGTT+GGG | + | chr1_3:13355534-13355553 | Msa0105080:intron | 30.0% | |
| TACTAATAGCCAATAAAGGT+TGG | - | chr1_3:13355802-13355821 | None:intergenic | 30.0% | |
| ! | AACCTTTATTGGCTATTAGT+AGG | + | chr1_3:13355801-13355820 | Msa0105080:intron | 30.0% |
| ATCCTACTAATAGCCAATAA+AGG | - | chr1_3:13355806-13355825 | None:intergenic | 30.0% | |
| TTAGTAGGATTATTAGCAGT+AGG | + | chr1_3:13355816-13355835 | Msa0105080:intron | 30.0% | |
| TAGTAGGATTATTAGCAGTA+GGG | + | chr1_3:13355817-13355836 | Msa0105080:intron | 30.0% | |
| TAGTAGGATTATTAGCAGTA+GGG | + | chr1_3:13355817-13355836 | Msa0105080:intron | 30.0% | |
| ! | ACTCGCGATTTTCAATTTAT+GGG | + | chr1_3:13356110-13356129 | Msa0105080:intron | 30.0% |
| AACATTATCCCTTTCAAACA+TGG | - | chr1_3:13356277-13356296 | None:intergenic | 30.0% | |
| TGTTTGAAAGGGATAATGTT+TGG | + | chr1_3:13356277-13356296 | Msa0105080:intron | 30.0% | |
| GTTTGAAAGGGATAATGTTT+GGG | + | chr1_3:13356278-13356297 | Msa0105080:intron | 30.0% | |
| TTTGAAAGGGATAATGTTTG+GGG | + | chr1_3:13356279-13356298 | Msa0105080:intron | 30.0% | |
| AAAGGATTAAAGAACCAATG+GGG | - | chr1_3:13356394-13356413 | None:intergenic | 30.0% | |
| CTAAAGGATTAAAGAACCAA+TGG | - | chr1_3:13356396-13356415 | None:intergenic | 30.0% | |
| !! | CATTGGTTCTTTAATCCTTT+AGG | + | chr1_3:13356394-13356413 | Msa0105080:intron | 30.0% |
| CGTAAAATACACTAAATGGT+GGG | - | chr1_3:13356746-13356765 | None:intergenic | 30.0% | |
| ACAGCGTAAAATACACTAAA+TGG | - | chr1_3:13356750-13356769 | None:intergenic | 30.0% | |
| !!! | TACCCTGTTTTTTATACAAG+AGG | + | chr1_3:13356772-13356791 | Msa0105080:intron | 30.0% |
| AGCCTCTTGTATAAAAAACA+GGG | - | chr1_3:13356777-13356796 | None:intergenic | 30.0% | |
| TCTTGTAATACATTAAGTCC+TGG | - | chr1_3:13356804-13356823 | None:intergenic | 30.0% | |
| GTATTACAAGAAAATGCTTC+TGG | + | chr1_3:13356813-13356832 | Msa0105080:intron | 30.0% | |
| CCAAAAAAAAGAAGTTTCTG+CGG | + | chr1_3:13357162-13357181 | Msa0105080:intron | 30.0% | |
| TCATGAACTGTAGTATTACA+GGG | - | chr1_3:13357451-13357470 | None:intergenic | 30.0% | |
| TTCATGAACTGTAGTATTAC+AGG | - | chr1_3:13357452-13357471 | None:intergenic | 30.0% | |
| GTAATACTACAGTTCATGAA+AGG | + | chr1_3:13357452-13357471 | Msa0105080:intron | 30.0% | |
| ACAATTTAACACTAGTTCAG+AGG | - | chr1_3:13357790-13357809 | None:intergenic | 30.0% | |
| !! | TTCAAGAAGTGCTTACAATT+TGG | + | chr1_3:13358423-13358442 | Msa0105080:CDS | 30.0% |
| AGTGCTTACAATTTGGAAAT+AGG | + | chr1_3:13358430-13358449 | Msa0105080:CDS | 30.0% | |
| CATTTGACATCTTAACAGAT+AGG | - | chr1_3:13358594-13358613 | None:intergenic | 30.0% | |
| !!! | TATAAGTGGCAAGTTGATTT+TGG | + | chr1_3:13358630-13358649 | Msa0105080:three_prime_UTR | 30.0% |
| ! | GATTTTCCATTGAGCTAATC+GGG | - | chr1_3:13354790-13354809 | None:intergenic | 35.0% |
| ! | CGATTTTCCATTGAGCTAAT+CGG | - | chr1_3:13354791-13354810 | None:intergenic | 35.0% |
| CAATGGAAAATCGACAACTT+TGG | + | chr1_3:13354798-13354817 | Msa0105080:CDS | 35.0% | |
| TCTGATTTCTTGTACGAACA+AGG | - | chr1_3:13354825-13354844 | None:intergenic | 35.0% | |
| AAATCAGACCCTTTCAAACT+TGG | + | chr1_3:13354837-13354856 | Msa0105080:CDS | 35.0% | |
| ACCCTTTCAAACTTGGTATT+TGG | + | chr1_3:13354844-13354863 | Msa0105080:CDS | 35.0% | |
| ! | TCAAACTTGGTATTTGGAAC+TGG | + | chr1_3:13354850-13354869 | Msa0105080:CDS | 35.0% |
| ATTTGTCGATAGAGAGAAAC+AGG | + | chr1_3:13354956-13354975 | Msa0105080:CDS | 35.0% | |
| AGAAGAAGAAGAAGCAGTAT+TGG | - | chr1_3:13355064-13355083 | None:intergenic | 35.0% | |
| AGGGGAAATGTAAAATTTGC+GGG | - | chr1_3:13355091-13355110 | None:intergenic | 35.0% | |
| CAGGGGAAATGTAAAATTTG+CGG | - | chr1_3:13355092-13355111 | None:intergenic | 35.0% | |
| AGAGATAACATACTAACCAG+GGG | - | chr1_3:13355109-13355128 | None:intergenic | 35.0% | |
| TCTTTAATCAATGTGGGACT+TGG | - | chr1_3:13355233-13355252 | None:intergenic | 35.0% | |
| GAGACACTCTTTAATCAATG+TGG | - | chr1_3:13355240-13355259 | None:intergenic | 35.0% | |
| TGAGAATGACTTACAAAGAC+AGG | + | chr1_3:13355362-13355381 | Msa0105080:intron | 35.0% | |
| GAGAATGACTTACAAAGACA+GGG | + | chr1_3:13355363-13355382 | Msa0105080:intron | 35.0% | |
| AGAATGACTTACAAAGACAG+GGG | + | chr1_3:13355364-13355383 | Msa0105080:intron | 35.0% | |
| AACCGAGTAAACCACAAAAT+TGG | - | chr1_3:13355390-13355409 | None:intergenic | 35.0% | |
| ATCTTTCACCTTACAAAAGC+CGG | + | chr1_3:13355422-13355441 | Msa0105080:intron | 35.0% | |
| !! | TACAAAAACCGGCTTTTGTA+AGG | - | chr1_3:13355433-13355452 | None:intergenic | 35.0% |
| ! | TCTCCTTGAGTTTTACTAGT+AGG | + | chr1_3:13355490-13355509 | Msa0105080:intron | 35.0% |
| TGGAATGCAAACAAGAACTA+AGG | + | chr1_3:13355841-13355860 | Msa0105080:intron | 35.0% | |
| TACTAGTAGCCAATAAAGGT+TGG | - | chr1_3:13355964-13355983 | None:intergenic | 35.0% | |
| ! | AACCTTTATTGGCTACTAGT+AGG | + | chr1_3:13355963-13355982 | Msa0105080:intron | 35.0% |
| ATCCTACTAGTAGCCAATAA+AGG | - | chr1_3:13355968-13355987 | None:intergenic | 35.0% | |
| CTAGTAGGATTATTAGCAGT+AGG | + | chr1_3:13355978-13355997 | Msa0105080:intron | 35.0% | |
| AGGAATCCATATCAATCAAC+GGG | - | chr1_3:13356036-13356055 | None:intergenic | 35.0% | |
| GAGGAATCCATATCAATCAA+CGG | - | chr1_3:13356037-13356056 | None:intergenic | 35.0% | |
| CTCTAAACTATCATTAGTGG+AGG | - | chr1_3:13356056-13356075 | None:intergenic | 35.0% | |
| ! | GACTCGCGATTTTCAATTTA+TGG | + | chr1_3:13356109-13356128 | Msa0105080:intron | 35.0% |
| AAGTCTCAGTATCAAGCAAA+AGG | - | chr1_3:13356214-13356233 | None:intergenic | 35.0% | |
| TTGAAAGGGATAATGTTTGG+GGG | + | chr1_3:13356280-13356299 | Msa0105080:intron | 35.0% | |
| !! | TTCTTTAATCCTTTAGGGCA+AGG | + | chr1_3:13356400-13356419 | Msa0105080:intron | 35.0% |
| !! | TCTAGAAGAGGCTGATTTTT+AGG | + | chr1_3:13356438-13356457 | Msa0105080:intron | 35.0% |
| TCATACCTCTTAAACTTCTG+CGG | + | chr1_3:13356505-13356524 | Msa0105080:intron | 35.0% | |
| CATAATGTCGGTAATTTACC+AGG | - | chr1_3:13356622-13356641 | None:intergenic | 35.0% | |
| GCGTAAAATACACTAAATGG+TGG | - | chr1_3:13356747-13356766 | None:intergenic | 35.0% | |
| CAGCCTCTTGTATAAAAAAC+AGG | - | chr1_3:13356778-13356797 | None:intergenic | 35.0% | |
| CAAGGGATACAATAATAAGC+AGG | - | chr1_3:13356889-13356908 | None:intergenic | 35.0% | |
| TTCCTGATACGAAACTTAAG+TGG | - | chr1_3:13356956-13356975 | None:intergenic | 35.0% | |
| ATGCACTTAAGTTTCGTATC+AGG | + | chr1_3:13356978-13356997 | Msa0105080:intron | 35.0% | |
| !! | ACTTTGAGATTATTAGCTCG+TGG | - | chr1_3:13357104-13357123 | None:intergenic | 35.0% |
| !!! | CCGCAGAAACTTCTTTTTTT+TGG | - | chr1_3:13357165-13357184 | None:intergenic | 35.0% |
| CAGATCACTAGATCTACAAT+TGG | - | chr1_3:13357231-13357250 | None:intergenic | 35.0% | |
| TTCACCATACAATCTTGAAC+TGG | - | chr1_3:13357401-13357420 | None:intergenic | 35.0% | |
| AATTAGAGACTCACATTCAG+AGG | - | chr1_3:13357574-13357593 | None:intergenic | 35.0% | |
| TCCATACATGTATCTCAGAA+GGG | - | chr1_3:13358120-13358139 | None:intergenic | 35.0% | |
| TTCCATACATGTATCTCAGA+AGG | - | chr1_3:13358121-13358140 | None:intergenic | 35.0% | |
| CAATAAAACCCGAAGATTTC+TGG | + | chr1_3:13358141-13358160 | Msa0105080:CDS | 35.0% | |
| CCTACTTGAAGATCTTAACT+CGG | + | chr1_3:13358238-13358257 | Msa0105080:CDS | 35.0% | |
| CTACTTGAAGATCTTAACTC+GGG | + | chr1_3:13358239-13358258 | Msa0105080:CDS | 35.0% | |
| ! | TTTTCAATAAGCTGCCAAGC+TGG | - | chr1_3:13354612-13354631 | None:intergenic | 40.0% |
| CCAGACAGATACATGTTTGT+TGG | - | chr1_3:13354663-13354682 | None:intergenic | 40.0% | |
| CCAACAAACATGTATCTGTC+TGG | + | chr1_3:13354660-13354679 | Msa0105080:five_prime_UTR | 40.0% | |
| ACAAAACATGGGAGATTCGA+AGG | + | chr1_3:13354752-13354771 | Msa0105080:exon | 40.0% | |
| ! | CAATTTCCCGATTAGCTCAA+TGG | + | chr1_3:13354781-13354800 | Msa0105080:CDS | 40.0% |
| AGAATGAAACGAGCAATAGG+AGG | - | chr1_3:13355033-13355052 | None:intergenic | 40.0% | |
| CGAAGAATGAAACGAGCAAT+AGG | - | chr1_3:13355036-13355055 | None:intergenic | 40.0% | |
| GGAAATGTAAAATTTGCGGG+AGG | - | chr1_3:13355088-13355107 | None:intergenic | 40.0% | |
| ! | CGCAAATTTTACATTTCCCC+TGG | + | chr1_3:13355090-13355109 | Msa0105080:CDS | 40.0% |
| ACTGTAATATCAGCTCGTAC+TGG | + | chr1_3:13355202-13355221 | Msa0105080:intron | 40.0% | |
| ! | GGCCAATTTTGTGGTTTACT+CGG | + | chr1_3:13355385-13355404 | Msa0105080:intron | 40.0% |
| CGCATAAGAATCTCTTTGGT+GGG | - | chr1_3:13355596-13355615 | None:intergenic | 40.0% | |
| CCACCAAAGAGATTCTTATG+CGG | + | chr1_3:13355594-13355613 | Msa0105080:intron | 40.0% | |
| CACCAAAGAGATTCTTATGC+GGG | + | chr1_3:13355595-13355614 | Msa0105080:intron | 40.0% | |
| AACTCCTTACCAACTGAGTT+GGG | + | chr1_3:13355658-13355677 | Msa0105080:intron | 40.0% | |
| AACGTGAGAATCTCTTTGGT+GGG | - | chr1_3:13355731-13355750 | None:intergenic | 40.0% | |
| TGTCAACGTGAGAATCTCTT+TGG | - | chr1_3:13355735-13355754 | None:intergenic | 40.0% | |
| !! | CCAATAAAGGTTGGCTTAGT+TGG | - | chr1_3:13355793-13355812 | None:intergenic | 40.0% |
| CCAACTAAGCCAACCTTTAT+TGG | + | chr1_3:13355790-13355809 | Msa0105080:intron | 40.0% | |
| AGGATTATTAGCAGTAGGGT+TGG | + | chr1_3:13355821-13355840 | Msa0105080:intron | 40.0% | |
| TTGCGGGATATGAATCAACA+GGG | - | chr1_3:13355873-13355892 | None:intergenic | 40.0% | |
| !! | TGTTGATTCATATCCCGCAA+GGG | + | chr1_3:13355873-13355892 | Msa0105080:intron | 40.0% |
| AGGATTATTAGCAGTAGGGT+TGG | + | chr1_3:13355821-13355840 | Msa0105080:intron | 40.0% | |
| TGGACTGCAAACAAGAACTA+AGG | + | chr1_3:13356003-13356022 | Msa0105080:intron | 40.0% | |
| ! | AATGTCCCCGTTGATTGATA+TGG | + | chr1_3:13356027-13356046 | Msa0105080:intron | 40.0% |
| GGAATCCATATCAATCAACG+GGG | - | chr1_3:13356035-13356054 | None:intergenic | 40.0% | |
| TTACTCTCTACTCACTTCAG+AGG | - | chr1_3:13356314-13356333 | None:intergenic | 40.0% | |
| TGAGTATTTCCTTGCCCTAA+AGG | - | chr1_3:13356412-13356431 | None:intergenic | 40.0% | |
| TTAGGGCAAGGAAATACTCA+AGG | + | chr1_3:13356412-13356431 | Msa0105080:intron | 40.0% | |
| TAGGGCAAGGAAATACTCAA+GGG | + | chr1_3:13356413-13356432 | Msa0105080:intron | 40.0% | |
| !! | AGAAGAGGCTGATTTTTAGG+TGG | + | chr1_3:13356441-13356460 | Msa0105080:intron | 40.0% |
| !!! | GAAGAGGCTGATTTTTAGGT+GGG | + | chr1_3:13356442-13356461 | Msa0105080:intron | 40.0% |
| !!! | AAGAGGCTGATTTTTAGGTG+GGG | + | chr1_3:13356443-13356462 | Msa0105080:intron | 40.0% |
| !! | GGGAAAAGAGAGGTATTGAA+TGG | + | chr1_3:13356529-13356548 | Msa0105080:intron | 40.0% |
| ! | ACAATCTAAATGATGGAGCC+TGG | + | chr1_3:13356601-13356620 | Msa0105080:intron | 40.0% |
| ATGCAGGCAGAACATAATGT+CGG | - | chr1_3:13356634-13356653 | None:intergenic | 40.0% | |
| ! | TTATACAAGAGGCTGTTTCC+AGG | + | chr1_3:13356783-13356802 | Msa0105080:intron | 40.0% |
| CAAGAAAATGCTTCTGGATC+TGG | + | chr1_3:13356819-13356838 | Msa0105080:intron | 40.0% | |
| CACCACTTAAGTTTCGTATC+AGG | + | chr1_3:13356951-13356970 | Msa0105080:intron | 40.0% | |
| GTTTCTGCGGTAAACTCATA+TGG | + | chr1_3:13357175-13357194 | Msa0105080:intron | 40.0% | |
| GTAGATCTAGTGATCTGTCT+TGG | + | chr1_3:13357234-13357253 | Msa0105080:intron | 40.0% | |
| TGTGCCAGTTCAAGATTGTA+TGG | + | chr1_3:13357394-13357413 | Msa0105080:intron | 40.0% | |
| GTATGGTGAAATGCTGATAG+AGG | + | chr1_3:13357411-13357430 | Msa0105080:intron | 40.0% | |
| CATCAATAATCAAGCGACCA+AGG | - | chr1_3:13357525-13357544 | None:intergenic | 40.0% | |
| ! | TTTTCCATCAGATGGCCATA+TGG | - | chr1_3:13357871-13357890 | None:intergenic | 40.0% |
| ! | GAATGCAGTTTTCCATCAGA+TGG | - | chr1_3:13357879-13357898 | None:intergenic | 40.0% |
| CATCTGCGGTTATAATAGTG+AGG | - | chr1_3:13357965-13357984 | None:intergenic | 40.0% | |
| CTCACTATTATAACCGCAGA+TGG | + | chr1_3:13357963-13357982 | Msa0105080:CDS | 40.0% | |
| CTTGTGACATGTCTTCTATG+TGG | - | chr1_3:13358085-13358104 | None:intergenic | 40.0% | |
| GCAGCTAATAAGTACGACAT+CGG | + | chr1_3:13358188-13358207 | Msa0105080:CDS | 40.0% | |
| CCGAGTTAAGATCTTCAAGT+AGG | - | chr1_3:13358241-13358260 | None:intergenic | 40.0% | |
| ACAGATAGGTTGTTGAGAGA+CGG | - | chr1_3:13358580-13358599 | None:intergenic | 40.0% | |
| !!! | AGTGGCAAGTTGATTTTGGT+TGG | + | chr1_3:13358634-13358653 | Msa0105080:three_prime_UTR | 40.0% |
| TTAGAAACACGCGAAGGTTC+AGG | - | chr1_3:13355003-13355022 | None:intergenic | 45.0% | |
| ! | TGAACCTTCGCGTGTTTCTA+AGG | + | chr1_3:13355002-13355021 | Msa0105080:CDS | 45.0% |
| TGTTCCTTAGAAACACGCGA+AGG | - | chr1_3:13355009-13355028 | None:intergenic | 45.0% | |
| CGTCCCAAAGACCAATTTGA+TGG | - | chr1_3:13355284-13355303 | None:intergenic | 45.0% | |
| ! | AAAGACAGGGGCCAATTTTG+TGG | + | chr1_3:13355376-13355395 | Msa0105080:intron | 45.0% |
| ! | AGTTTAGGTGAGTTGGGTTC+CGG | + | chr1_3:13355540-13355559 | Msa0105080:intron | 45.0% |
| ! | GAATCTCTTTGGTGGGTGAT+CGG | - | chr1_3:13355589-13355608 | None:intergenic | 45.0% |
| CCGCATAAGAATCTCTTTGG+TGG | - | chr1_3:13355597-13355616 | None:intergenic | 45.0% | |
| GTTGGATTCATATCCCGCAA+GGG | - | chr1_3:13355641-13355660 | None:intergenic | 45.0% | |
| AGTTGGATTCATATCCCGCA+AGG | - | chr1_3:13355642-13355661 | None:intergenic | 45.0% | |
| !! | CAACTCAGTTGGTAAGGAGT+TGG | - | chr1_3:13355659-13355678 | None:intergenic | 45.0% |
| CAACTCCTTACCAACTGAGT+TGG | + | chr1_3:13355657-13355676 | Msa0105080:intron | 45.0% | |
| TTGGGCTTCAAGGTTGACTA+GGG | + | chr1_3:13355676-13355695 | Msa0105080:intron | 45.0% | |
| TTCAAGGTTGACTAGGGTCA+AGG | + | chr1_3:13355682-13355701 | Msa0105080:intron | 45.0% | |
| CAACGTGAGAATCTCTTTGG+TGG | - | chr1_3:13355732-13355751 | None:intergenic | 45.0% | |
| AGTTGGACGCATATCCACAA+GGG | - | chr1_3:13355776-13355795 | None:intergenic | 45.0% | |
| TAGTTGGACGCATATCCACA+AGG | - | chr1_3:13355777-13355796 | None:intergenic | 45.0% | |
| CTTGCGGGATATGAATCAAC+AGG | - | chr1_3:13355874-13355893 | None:intergenic | 45.0% | |
| !! | CTGTTGATTCATATCCCGCA+AGG | + | chr1_3:13355872-13355891 | Msa0105080:intron | 45.0% |
| AGTTGGACTCATATCCGCAA+GGG | - | chr1_3:13355927-13355946 | None:intergenic | 45.0% | |
| ! | AAAGGTTGGCTCAGTTGGTA+AGG | - | chr1_3:13355950-13355969 | None:intergenic | 45.0% |
| ! | CCAATAAAGGTTGGCTCAGT+TGG | - | chr1_3:13355955-13355974 | None:intergenic | 45.0% |
| CCAACTGAGCCAACCTTTAT+TGG | + | chr1_3:13355952-13355971 | Msa0105080:intron | 45.0% | |
| ATCGAGCGTAAGAGGAAATG+AGG | - | chr1_3:13356254-13356273 | None:intergenic | 45.0% | |
| AAACATGGATCGAGCGTAAG+AGG | - | chr1_3:13356262-13356281 | None:intergenic | 45.0% | |
| ACGCTCGATCCATGTTTGAA+AGG | + | chr1_3:13356265-13356284 | Msa0105080:intron | 45.0% | |
| CGCTCGATCCATGTTTGAAA+GGG | + | chr1_3:13356266-13356285 | Msa0105080:intron | 45.0% | |
| !! | TACTCAAGGGTGTCTAGAAG+AGG | + | chr1_3:13356426-13356445 | Msa0105080:intron | 45.0% |
| TACCTCTTAAACTTCTGCGG+AGG | + | chr1_3:13356508-13356527 | Msa0105080:intron | 45.0% | |
| ACCTCTTAAACTTCTGCGGA+GGG | + | chr1_3:13356509-13356528 | Msa0105080:intron | 45.0% | |
| ATGACAGTGAATGCAGATGC+AGG | - | chr1_3:13356650-13356669 | None:intergenic | 45.0% | |
| !! | TGCGAGAGTTTTAGTGCACT+GGG | - | chr1_3:13356701-13356720 | None:intergenic | 45.0% |
| !! | ATGCGAGAGTTTTAGTGCAC+TGG | - | chr1_3:13356702-13356721 | None:intergenic | 45.0% |
| ACTAAAACTCTCGCATACGC+AGG | + | chr1_3:13356706-13356725 | Msa0105080:intron | 45.0% | |
| CTAAAACTCTCGCATACGCA+GGG | + | chr1_3:13356707-13356726 | Msa0105080:intron | 45.0% | |
| AGGATTCGTCAGATGATGCA+AGG | - | chr1_3:13356869-13356888 | None:intergenic | 45.0% | |
| ATTATTGTATCCCTTGCCCC+AGG | + | chr1_3:13356893-13356912 | Msa0105080:intron | 45.0% | |
| GAACCTGTGATGACTTTGTC+TGG | + | chr1_3:13357482-13357501 | Msa0105080:CDS | 45.0% | |
| CCAAGGAATGTAGTATCCAC+AGG | - | chr1_3:13357508-13357527 | None:intergenic | 45.0% | |
| CCTGTGGATACTACATTCCT+TGG | + | chr1_3:13357505-13357524 | Msa0105080:CDS | 45.0% | |
| CATTCAGAGGATGGATCTTG+AGG | - | chr1_3:13357561-13357580 | None:intergenic | 45.0% | |
| AGAGACTCACATTCAGAGGA+TGG | - | chr1_3:13357570-13357589 | None:intergenic | 45.0% | |
| CTAGTTCAGAGGTTCTCTGA+GGG | - | chr1_3:13357779-13357798 | None:intergenic | 45.0% | |
| ACTAGTTCAGAGGTTCTCTG+AGG | - | chr1_3:13357780-13357799 | None:intergenic | 45.0% | |
| !!! | TTTTTTTCCGCCTGAGAGTC+AGG | + | chr1_3:13357830-13357849 | Msa0105080:intron | 45.0% |
| !!! | TTTTTTCCGCCTGAGAGTCA+GGG | + | chr1_3:13357831-13357850 | Msa0105080:intron | 45.0% |
| ATCAGATGGCCATATGGAAC+TGG | - | chr1_3:13357865-13357884 | None:intergenic | 45.0% | |
| AGTTCCATATGGCCATCTGA+TGG | + | chr1_3:13357864-13357883 | Msa0105080:CDS | 45.0% | |
| CTTTGTCAAGCATACGAGAG+AGG | - | chr1_3:13357929-13357948 | None:intergenic | 45.0% | |
| CATGTCACAAGAATCCTGCA+CGG | + | chr1_3:13358094-13358113 | Msa0105080:CDS | 45.0% | |
| !! | GCCCTTCTGAGATACATGTA+TGG | + | chr1_3:13358116-13358135 | Msa0105080:CDS | 45.0% |
| CTGTGCTTCCAGAAATCTTC+GGG | - | chr1_3:13358152-13358171 | None:intergenic | 45.0% | |
| CCTGTGCTTCCAGAAATCTT+CGG | - | chr1_3:13358153-13358172 | None:intergenic | 45.0% | |
| TGTTCTCGAGAGGCTTAATG+AGG | + | chr1_3:13358265-13358284 | Msa0105080:CDS | 45.0% | |
| CTTTCTTCAACTTGTGCAGC+TGG | - | chr1_3:13358301-13358320 | None:intergenic | 45.0% | |
| ! | CAGCTGCACAAGTTGAAGAA+AGG | + | chr1_3:13358299-13358318 | Msa0105080:CDS | 45.0% |
| !!! | GTTTTTTCGTCACGCAGACA+GGG | + | chr1_3:13358382-13358401 | Msa0105080:CDS | 45.0% |
| TCTGTCTGGTCTAGTGCGTT+AGG | + | chr1_3:13354674-13354693 | Msa0105080:five_prime_UTR | 50.0% | |
| TCTGGTCTAGTGCGTTAGGT+TGG | + | chr1_3:13354678-13354697 | Msa0105080:five_prime_UTR | 50.0% | |
| CTGGTCTAGTGCGTTAGGTT+GGG | + | chr1_3:13354679-13354698 | Msa0105080:five_prime_UTR | 50.0% | |
| ! | GTTTAGGTGAGTTGGGTTCC+GGG | + | chr1_3:13355541-13355560 | Msa0105080:intron | 50.0% |
| ! | TTTAGGTGAGTTGGGTTCCG+GGG | + | chr1_3:13355542-13355561 | Msa0105080:intron | 50.0% |
| CGCCCGCATAAGAATCTCTT+TGG | - | chr1_3:13355600-13355619 | None:intergenic | 50.0% | |
| ! | TTCATATCCCGCAAGGGCAT+GGG | - | chr1_3:13355879-13355898 | None:intergenic | 50.0% |
| ATTCATATCCCGCAAGGGCA+TGG | - | chr1_3:13355878-13355897 | None:intergenic | 50.0% | |
| ! | GAAGCCCAACTCAGTTGGTA+AGG | - | chr1_3:13355665-13355684 | None:intergenic | 50.0% |
| ! | ACCAACTGAGTTGGGCTTCA+AGG | + | chr1_3:13355666-13355685 | Msa0105080:intron | 50.0% |
| ACCTTGAAGCCCAACTCAGT+TGG | - | chr1_3:13355670-13355689 | None:intergenic | 50.0% | |
| GTTGGGCTTCAAGGTTGACT+AGG | + | chr1_3:13355675-13355694 | Msa0105080:intron | 50.0% | |
| ! | ACGCATATCCACAAGGGTGT+GGG | - | chr1_3:13355770-13355789 | None:intergenic | 50.0% |
| ATTCATATCCCGCAAGGGCA+TGG | + | chr1_3:13355878-13355897 | Msa0105080:intron | 50.0% | |
| ! | TTCATATCCCGCAAGGGCAT+GGG | + | chr1_3:13355879-13355898 | Msa0105080:intron | 50.0% |
| ! | ACTCATATCCGCAAGGGCAT+GGG | - | chr1_3:13355921-13355940 | None:intergenic | 50.0% |
| GAGTTGGACTCATATCCGCA+AGG | - | chr1_3:13355928-13355947 | None:intergenic | 50.0% | |
| !! | TGGCTCAGTTGGTAAGGAGT+TGG | - | chr1_3:13355944-13355963 | None:intergenic | 50.0% |
| TCCCTCCGCAGAAGTTTAAG+AGG | - | chr1_3:13356513-13356532 | None:intergenic | 50.0% | |
| ATGGCTATCCCTTGATGCCT+GGG | - | chr1_3:13356913-13356932 | None:intergenic | 50.0% | |
| TATGGCTATCCCTTGATGCC+TGG | - | chr1_3:13356914-13356933 | None:intergenic | 50.0% | |
| AGGCCAGACAAAGTCATCAC+AGG | - | chr1_3:13357488-13357507 | None:intergenic | 50.0% | |
| TGATGACTTTGTCTGGCCTG+TGG | + | chr1_3:13357489-13357508 | Msa0105080:CDS | 50.0% | |
| ! | CAAGCATACGAGAGAGGCAT+CGG | - | chr1_3:13357923-13357942 | None:intergenic | 50.0% |
| AACCGCAGATGGCACACTTA+AGG | + | chr1_3:13357974-13357993 | Msa0105080:CDS | 50.0% | |
| AGCCTTAAGTGTGCCATCTG+CGG | - | chr1_3:13357979-13357998 | None:intergenic | 50.0% | |
| CTGAAACACAGGAGAGGTTG+CGG | - | chr1_3:13358018-13358037 | None:intergenic | 50.0% | |
| TGATACGAGGCCTGAAACAC+AGG | - | chr1_3:13358029-13358048 | None:intergenic | 50.0% | |
| TTCACTGCTGCTGTGATACG+AGG | - | chr1_3:13358042-13358061 | None:intergenic | 50.0% | |
| ! | CCGAAGATTTCTGGAAGCAC+AGG | + | chr1_3:13358150-13358169 | Msa0105080:CDS | 50.0% |
| ! | AGATTTCTGGAAGCACAGGC+TGG | + | chr1_3:13358154-13358173 | Msa0105080:CDS | 50.0% |
| TGATCTCAAAGACGCATGCG+AGG | + | chr1_3:13358211-13358230 | Msa0105080:CDS | 50.0% | |
| ACTCGGGAAATGTTCTCGAG+AGG | + | chr1_3:13358255-13358274 | Msa0105080:CDS | 50.0% | |
| !!! | CGTTTTTTCGTCACGCAGAC+AGG | + | chr1_3:13358381-13358400 | Msa0105080:CDS | 50.0% |
| GTGAACGGTGCATACCAGCT+TGG | + | chr1_3:13354595-13354614 | Msa0105080:five_prime_UTR | 55.0% | |
| ! | TTGGGTTCCGGGGTTGACTT+GGG | + | chr1_3:13355552-13355571 | Msa0105080:intron | 55.0% |
| GAGTTGTACCCATGCCCTTG+CGG | + | chr1_3:13355624-13355643 | Msa0105080:intron | 55.0% | |
| AGTTGTACCCATGCCCTTGC+GGG | + | chr1_3:13355625-13355644 | Msa0105080:intron | 55.0% | |
| AGGTTGACTAGGGTCAAGGC+AGG | + | chr1_3:13355686-13355705 | Msa0105080:intron | 55.0% | |
| GACGCATATCCACAAGGGTG+TGG | - | chr1_3:13355771-13355790 | None:intergenic | 55.0% | |
| AGTTGTACCCATGCCCTTGC+GGG | - | chr1_3:13355625-13355644 | None:intergenic | 55.0% | |
| GAGTTGTACCCATGCCCTTG+CGG | - | chr1_3:13355624-13355643 | None:intergenic | 55.0% | |
| GTGTTGTACCCATGCCCTTG+CGG | + | chr1_3:13355910-13355929 | Msa0105080:intron | 55.0% | |
| GACTCATATCCGCAAGGGCA+TGG | - | chr1_3:13355922-13355941 | None:intergenic | 55.0% | |
| CTTCTGCGGAGGGAAAAGAG+AGG | + | chr1_3:13356519-13356538 | Msa0105080:intron | 55.0% | |
| TGGCTATCCCTTGATGCCTG+GGG | - | chr1_3:13356912-13356931 | None:intergenic | 55.0% | |
| GTGGAGACGCCAGTTCCATA+TGG | + | chr1_3:13357853-13357872 | Msa0105080:CDS | 55.0% | |
| CGCAACCTCTCCTGTGTTTC+AGG | + | chr1_3:13358016-13358035 | Msa0105080:CDS | 55.0% | |
| !! | AAGCACAGGCTGGCTTTGCT+TGG | + | chr1_3:13358164-13358183 | Msa0105080:CDS | 55.0% |
| TCGAGAGGCTTAATGAGGCC+TGG | + | chr1_3:13358270-13358289 | Msa0105080:CDS | 55.0% | |
| CTTGTGCAGCTGGTACAACC+AGG | - | chr1_3:13358291-13358310 | None:intergenic | 55.0% | |
| GTTGGGTTCCGGGGTTGACT+TGG | + | chr1_3:13355551-13355570 | Msa0105080:intron | 60.0% | |
| !! | TGGGTTCCGGGGTTGACTTG+GGG | + | chr1_3:13355553-13355572 | Msa0105080:intron | 60.0% |
| GAGCTGTACCCACACCCTTG+TGG | + | chr1_3:13355759-13355778 | Msa0105080:intron | 60.0% | |
| ACTCTCGCATACGCAGGGTC+TGG | + | chr1_3:13356712-13356731 | Msa0105080:intron | 60.0% | |
| CTCTCGCATACGCAGGGTCT+GGG | + | chr1_3:13356713-13356732 | Msa0105080:intron | 60.0% | |
| GCATACGCAGGGTCTGGGAA+GGG | + | chr1_3:13356718-13356737 | Msa0105080:intron | 60.0% | |
| CATACGCAGGGTCTGGGAAG+GGG | + | chr1_3:13356719-13356738 | Msa0105080:intron | 60.0% | |
| ATCCCTTGCCCCAGGCATCA+AGG | + | chr1_3:13356901-13356920 | Msa0105080:intron | 60.0% | |
| TCCCTTGCCCCAGGCATCAA+GGG | + | chr1_3:13356902-13356921 | Msa0105080:intron | 60.0% | |
| TCCCTTGATGCCTGGGGCAA+GGG | - | chr1_3:13356906-13356925 | None:intergenic | 60.0% | |
| ATCCCTTGATGCCTGGGGCA+AGG | - | chr1_3:13356907-13356926 | None:intergenic | 60.0% | |
| TTTCCGCCTGAGAGTCAGGG+TGG | + | chr1_3:13357834-13357853 | Msa0105080:intron | 60.0% | |
| TCTCCACCCTGACTCTCAGG+CGG | - | chr1_3:13357840-13357859 | None:intergenic | 60.0% | |
| CGAGGCCTGAAACACAGGAG+AGG | - | chr1_3:13358024-13358043 | None:intergenic | 60.0% | |
| GTATCTCAGAAGGGCCGTGC+AGG | - | chr1_3:13358111-13358130 | None:intergenic | 60.0% | |
| CCTCGACCCCAAGTCAACCC+CGG | - | chr1_3:13355562-13355581 | None:intergenic | 65.0% | |
| CGCATACGCAGGGTCTGGGA+AGG | + | chr1_3:13356717-13356736 | Msa0105080:intron | 65.0% | |
| GCGTCTCCACCCTGACTCTC+AGG | - | chr1_3:13357843-13357862 | None:intergenic | 65.0% | |
| !! | CCGGGGTTGACTTGGGGTCG+AGG | + | chr1_3:13355559-13355578 | Msa0105080:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 13354590 | 13358664 | 13354590 | ID=Msa0105080;Name=Msa0105080 |
| chr1_3 | mRNA | 13354590 | 13358664 | 13354590 | ID=Msa0105080-mRNA-1;Parent=Msa0105080;Name=Msa0105080-mRNA-1;_AED=0.11;_eAED=0.11;_QI=169|1|1|1|1|1|4|213|328 |
| chr1_3 | exon | 13354590 | 13354871 | 13354590 | ID=Msa0105080-mRNA-1:exon:5251;Parent=Msa0105080-mRNA-1 |
| chr1_3 | exon | 13354954 | 13355111 | 13354954 | ID=Msa0105080-mRNA-1:exon:5252;Parent=Msa0105080-mRNA-1 |
| chr1_3 | exon | 13357464 | 13357579 | 13357464 | ID=Msa0105080-mRNA-1:exon:5253;Parent=Msa0105080-mRNA-1 |
| chr1_3 | exon | 13357852 | 13358664 | 13357852 | ID=Msa0105080-mRNA-1:exon:5254;Parent=Msa0105080-mRNA-1 |
| chr1_3 | five_prime_UTR | 13354590 | 13354758 | 13354590 | ID=Msa0105080-mRNA-1:five_prime_utr;Parent=Msa0105080-mRNA-1 |
| chr1_3 | CDS | 13354759 | 13354871 | 13354759 | ID=Msa0105080-mRNA-1:cds;Parent=Msa0105080-mRNA-1 |
| chr1_3 | CDS | 13354954 | 13355111 | 13354954 | ID=Msa0105080-mRNA-1:cds;Parent=Msa0105080-mRNA-1 |
| chr1_3 | CDS | 13357464 | 13357579 | 13357464 | ID=Msa0105080-mRNA-1:cds;Parent=Msa0105080-mRNA-1 |
| chr1_3 | CDS | 13357852 | 13358451 | 13357852 | ID=Msa0105080-mRNA-1:cds;Parent=Msa0105080-mRNA-1 |
| chr1_3 | three_prime_UTR | 13358452 | 13358664 | 13358452 | ID=Msa0105080-mRNA-1:three_prime_utr;Parent=Msa0105080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
