AlfalfaGEDB | Msa0105800

M. sativa cultivar zhongmu-4 / Msa0105800

KEGG: -
GO: GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02365.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0105800	QSD99880.1	63.303	109	40	0	1	109	1	109	4.85e-44	152

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0105800	sp\|O49255\|NAC29_ARATH	30.508	177	92	6	4	158	9	176	4.42e-15	74.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0105800	A0A896WD20	63.303	109	40	0	1	109	1	109	2.32e-44	152

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TFs/TRs:

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Gene ID	Type	Classification
Msa0105800	TF	NAC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0105800	MtrunA17_Chr6g0481091	32.484	157	79	7	4	141	6	154	1.92e-17	77.4
Msa0105800	MtrunA17_Chr2g0318101	32.704	159	91	5	4	156	15	163	2.44e-17	79.0
Msa0105800	MtrunA17_Chr4g0047841	34.815	135	75	4	4	132	15	142	6.09e-16	74.7
Msa0105800	MtrunA17_Chr4g0056541	31.013	158	79	7	4	141	7	154	1.17e-15	74.3
Msa0105800	MtrunA17_Chr1g0147421	31.056	161	89	5	2	146	25	179	2.77e-15	73.2
Msa0105800	MtrunA17_Chr1g0200561	31.210	157	86	6	4	144	19	169	3.57e-15	72.8
Msa0105800	MtrunA17_Chr4g0050701	28.409	176	98	6	4	161	11	176	4.81e-15	70.1
Msa0105800	MtrunA17_Chr8g0384721	32.298	161	77	7	4	142	7	157	5.43e-15	71.6
Msa0105800	MtrunA17_Chr5g0417791	31.250	160	79	6	4	141	3	153	6.61e-15	70.9
Msa0105800	MtrunA17_Chr7g0263931	35.556	135	74	5	4	132	11	138	1.14e-14	71.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0105800	AT3G17730.1	31.210	157	81	7	4	141	6	154	4.33e-17	77.0
Msa0105800	AT4G36160.2	32.704	159	83	7	4	145	14	165	3.41e-16	76.3
Msa0105800	AT4G36160.1	32.704	159	83	7	4	145	10	161	3.48e-16	76.3
Msa0105800	AT4G36160.3	32.704	159	83	7	4	145	10	161	3.48e-16	76.3
Msa0105800	AT1G69490.1	30.508	177	92	6	4	158	9	176	4.49e-16	74.7
Msa0105800	AT3G10490.1	32.075	159	78	8	4	141	27	176	7.30e-16	73.6
Msa0105800	AT3G10480.2	32.911	158	77	8	4	141	27	175	1.03e-15	75.1
Msa0105800	AT2G24430.2	33.758	157	80	6	2	141	14	163	1.12e-15	74.3
Msa0105800	AT2G24430.1	33.758	157	80	6	2	141	14	163	1.12e-15	74.3
Msa0105800	AT1G71930.2	27.363	201	123	7	4	188	9	202	1.13e-15	74.3

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Find 46 sgRNAs with CRISPR-Local

Find 70 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATACGGCAAACCACAAA+AGG	0.484479	1_3:+14415959	None:intergenic
AGGACGCAATTAAAACTACC+TGG	0.589657	1_3:-14416124	Msa0105800:CDS
AGGTGATTCATCATATTTGC+AGG	0.397044	1_3:-14415777	None:intergenic
AGTAAAACTCCCTTGGGTGA+CGG	0.581299	1_3:+14416297	None:intergenic
AGTGTACTCGTACATAGTCC+AGG	0.581994	1_3:+14416106	None:intergenic
CAATGGTATTGACTTGATTA+AGG	0.260899	1_3:-14416378	Msa0105800:CDS
CATACGGGTCATACTGGTAC+AGG	0.551810	1_3:+14416348	None:intergenic
CATCCAGATCCATCCCTGGT+GGG	0.643760	1_3:+14415930	None:intergenic
CCAAAGTTGATGAGCCGAGG+AGG	0.632321	1_3:-14416265	Msa0105800:CDS
CCACCAGGGATGGATCTGGA+TGG	0.669808	1_3:-14415929	Msa0105800:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAGAAAGATTCAATTCATAC+GGG	+	chr1_3:14415924-14415943	None:intergenic	30.0%
ATCGATGAAATAATGAACAG+AGG	+	chr1_3:14416219-14416238	None:intergenic	30.0%
AAAATACGGCAAACCACAAA+AGG	+	chr1_3:14416298-14416317	None:intergenic	35.0%
TAACAAGGAGCTCATCAGAA+GGG	+	chr1_3:14415813-14415832	None:intergenic	40.0%
TCAATTCATACGGGTCATAC+TGG	+	chr1_3:14415915-14415934	None:intergenic	40.0%
TGAAGCAGTAAAACTCCCTT+GGG	+	chr1_3:14415966-14415985	None:intergenic	40.0%
GCTGTTCGAGAAATTACTGT+TGG	-	chr1_3:14416045-14416064	Msa0105800:intron	40.0%
TGTTGGAGCTGATAACATGT+TGG	-	chr1_3:14416062-14416081	Msa0105800:intron	40.0%
AGGACGCAATTAAAACTACC+TGG	-	chr1_3:14416130-14416149	Msa0105800:CDS	40.0%
GCGTTCTTCAACATCAGATA+AGG	+	chr1_3:14416362-14416381	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	14415778	14416498	14415778	ID=Msa0105800;Name=Msa0105800
chr1_3	mRNA	14415778	14416498	14415778	ID=Msa0105800-mRNA-1;Parent=Msa0105800;Name=Msa0105800-mRNA-1;_AED=0.54;_eAED=0.57;_QI=0\|0\|0\|1\|1\|1\|2\|0\|201
chr1_3	exon	14416103	14416498	14416103	ID=Msa0105800-mRNA-1:exon:5681;Parent=Msa0105800-mRNA-1
chr1_3	exon	14415778	14415984	14415778	ID=Msa0105800-mRNA-1:exon:5680;Parent=Msa0105800-mRNA-1
chr1_3	CDS	14416103	14416498	14416103	ID=Msa0105800-mRNA-1:cds;Parent=Msa0105800-mRNA-1
chr1_3	CDS	14415778	14415984	14415778	ID=Msa0105800-mRNA-1:cds;Parent=Msa0105800-mRNA-1

Gene Sequence

>Msa0105800

ATGGAATTGCTTCCACCTGGTGTTGGCTTCGTCCCTTCTGATGAGCTCCTTGTTAGCTACTACCTTGCCAACAAAAACAATGAAGATGTTAAGTATTTCAATGGTATTGACTTGATTAAGGAGTTGAACCTGTACCAGTATGACCCGTATGAATTGAATCTTTCTCAGTCCTTTTTCTTCCGTCACCCAAGGGAGTTTTACTGCTTCACTGCCAAAGTTGATGAGCCGAGGAGGCATTGTAAAACTGGATTTTGGATGCAGAAGGGAGCTGTTCGAGAAATTACTGTTGGAGCTGATAACATGTTGGTGGGAAATAAGTCTCTTTTTATGTTCTACATAGGAAATTCCCCTCAGGACGCAATTAAAACTACCTGGACTATGTACGAGTACACTCTTGCTCCTTTTGTGGTTTGCCGTATTTTTGATTGCCCACCAGGGATGGATCTGGATGGTGAGTTCGAAGCCTTATCTGATGTTGAAGAACGCGATGCTGCTGGCAATGACTTTGGTGTCACTGAGAAGCCTATGGGGGCTGGTGTTGGTGTTGGTTCTGCTTCTTCTGCTGGTCCTGCTGCTGAGCAAGGTGATTCATCATATTTGCAG

Protein sequence

>Msa0105800

MELLPPGVGFVPSDELLVSYYLANKNNEDVKYFNGIDLIKELNLYQYDPYELNLSQSFFFRHPREFYCFTAKVDEPRRHCKTGFWMQKGAVREITVGADNMLVGNKSLFMFYIGNSPQDAIKTTWTMYEYTLAPFVVCRIFDCPPGMDLDGEFEALSDVEERDAAGNDFGVTEKPMGAGVGVGSASSAGPAAEQGDSSYLQ