Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0105810 | A0A072VIG0 | 60.241 | 83 | 28 | 2 | 13 | 95 | 14 | 91 | 1.64e-20 | 88.2 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0105810 | TF | NAC |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 33 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATGTCACTCGAAAATTTA+AGG | 0.155764 | 1_3:-14422722 | Msa0105810:CDS |
| TATATTGGGTAGATAAATTA+AGG | 0.241752 | 1_3:-14419964 | None:intergenic |
| GCCATGCTTCCACCTGGTGC+TGG | 0.288291 | 1_3:-14423359 | Msa0105810:CDS |
| CTGGTAGTAGTGATGGTGGT+GGG | 0.303392 | 1_3:-14422690 | Msa0105810:CDS |
| ATGGATCTGGGTGCAGAGTT+TGG | 0.328893 | 1_3:-14422790 | Msa0105810:CDS |
| TTGCCCTCCAGCTATGGATC+TGG | 0.347954 | 1_3:-14422803 | Msa0105810:CDS |
| CCATGCTTCCACCTGGTGCT+GGG | 0.413477 | 1_3:-14423358 | Msa0105810:CDS |
| GATGTCACTCGAAAATTTAA+GGG | 0.421822 | 1_3:-14422721 | Msa0105810:CDS |
| GCTGGTAGTAGTGATGGTGG+TGG | 0.451886 | 1_3:-14422691 | Msa0105810:CDS |
| GCTGGGGCTGGTAGTAGTGA+TGG | 0.454213 | 1_3:-14422697 | Msa0105810:CDS |
| CCTACTGACGAGATACTTGT+TGG | 0.458463 | 1_3:-14423329 | Msa0105810:CDS |
| TCACATTTCACATATATTCA+AGG | 0.466258 | 1_3:-14422646 | Msa0105810:CDS |
| GCAATGGCCATGCTTCCACC+TGG | 0.468009 | 1_3:-14423365 | Msa0105810:CDS |
| AAAACACGGCACAAAACAAA+AGG | 0.470485 | 1_3:+14422829 | None:intergenic |
| TACTTGTTGGCTACTACCTT+AGG | 0.477557 | 1_3:-14423316 | Msa0105810:CDS |
| GGTGGTGGGGCTGCTGAGCA+AGG | 0.481889 | 1_3:-14422676 | Msa0105810:CDS |
| TGCCCTCCAGCTATGGATCT+GGG | 0.485421 | 1_3:-14422802 | Msa0105810:CDS |
| TGGTAGTAGTGATGGTGGTG+GGG | 0.505536 | 1_3:-14422689 | Msa0105810:CDS |
| CCCAGCACCAGGTGGAAGCA+TGG | 0.526903 | 1_3:+14423358 | None:intergenic |
| CCAACAAGTATCTCGTCAGT+AGG | 0.528725 | 1_3:+14423329 | None:intergenic |
| ACCTTCTTCAACATCAGATA+AGG | 0.528743 | 1_3:+14422765 | None:intergenic |
| CAACAAGTATCTCGTCAGTA+GGG | 0.551326 | 1_3:+14423330 | None:intergenic |
| ATATATTCAAGGCTCCCTGC+AGG | 0.566277 | 1_3:-14422635 | Msa0105810:intron |
| TCTGCACCCAGATCCATAGC+TGG | 0.569066 | 1_3:+14422796 | None:intergenic |
| GTAGGGAGAAACCCAGCACC+AGG | 0.574061 | 1_3:+14423347 | None:intergenic |
| GGGGCTGGTAGTAGTGATGG+TGG | 0.602818 | 1_3:-14422694 | Msa0105810:CDS |
| ATGTCACTCGAAAATTTAAG+GGG | 0.615370 | 1_3:-14422720 | Msa0105810:CDS |
| GCCTTATCTGATGTTGAAGA+AGG | 0.619001 | 1_3:-14422766 | Msa0105810:CDS |
| GCACCCAGATCCATAGCTGG+AGG | 0.628326 | 1_3:+14422799 | None:intergenic |
| GTTGAAGAAGGTGATGCTGC+TGG | 0.630740 | 1_3:-14422754 | Msa0105810:CDS |
| CACCCAGATCCATAGCTGGA+GGG | 0.633874 | 1_3:+14422800 | None:intergenic |
| GGGAGAAACCCAGCACCAGG+TGG | 0.653293 | 1_3:+14423350 | None:intergenic |
| TGTCACTCGAAAATTTAAGG+GGG | 0.730936 | 1_3:-14422719 | Msa0105810:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAAAAATTTAAAGAAAAAA+AGG | + | chr1_3:14421359-14421378 | None:intergenic | 10.0% |
| !! | AATATCAAAGTAAAAAATTA+TGG | - | chr1_3:14423229-14423248 | Msa0105810:intron | 10.0% |
| !! | ATTATATTGAAATCTTATAT+TGG | - | chr1_3:14423349-14423368 | Msa0105810:CDS | 10.0% |
| !! | TTATATTGAAATCTTATATT+GGG | - | chr1_3:14423350-14423369 | Msa0105810:CDS | 10.0% |
| !!! | TTTTTAAATTATTATTGTGC+AGG | - | chr1_3:14420474-14420493 | Msa0105810:intron | 15.0% |
| !! | GATAAAATTTATCAAAACTT+TGG | - | chr1_3:14420982-14421001 | Msa0105810:intron | 15.0% |
| !!! | TTAAACCATTTTTTTAAACT+CGG | + | chr1_3:14421082-14421101 | None:intergenic | 15.0% |
| !!! | TGTTTGTTTTAATGTTTATT+AGG | - | chr1_3:14421497-14421516 | Msa0105810:intron | 15.0% |
| !!! | TTTCAACATGTTATTTATAA+AGG | - | chr1_3:14421959-14421978 | Msa0105810:intron | 15.0% |
| !! | AATAAACAATCAATTATGAT+AGG | + | chr1_3:14422196-14422215 | None:intergenic | 15.0% |
| !! | AAACTACAAATTTATAACTA+TGG | - | chr1_3:14422711-14422730 | Msa0105810:CDS | 15.0% |
| !! | TAATTATGAAAATGTAAACA+TGG | + | chr1_3:14423333-14423352 | None:intergenic | 15.0% |
| !! | ACAAAAATCAATCATGATTT+AGG | + | chr1_3:14420791-14420810 | None:intergenic | 20.0% |
| !!! | CAATGATTTTTATGTTTGTA+TGG | - | chr1_3:14420894-14420913 | Msa0105810:intron | 20.0% |
| !! | AATTTCCGAGTTTAAAAAAA+TGG | - | chr1_3:14421074-14421093 | Msa0105810:intron | 20.0% |
| !!! | CAACTTTTCATTTCATTTTA+TGG | - | chr1_3:14421436-14421455 | Msa0105810:intron | 20.0% |
| !! | TTATGAATCCAAATGTTTAA+GGG | + | chr1_3:14421677-14421696 | None:intergenic | 20.0% |
| !! | ATTATGAATCCAAATGTTTA+AGG | + | chr1_3:14421678-14421697 | None:intergenic | 20.0% |
| !! | TTAAACATTTGGATTCATAA+TGG | - | chr1_3:14421677-14421696 | Msa0105810:intron | 20.0% |
| !! | TAACTACCTTATTATTATTG+AGG | + | chr1_3:14421781-14421800 | None:intergenic | 20.0% |
| !! | AATCGAGTTATATTAGATAT+TGG | - | chr1_3:14421927-14421946 | Msa0105810:intron | 20.0% |
| !!! | ATATCATTTTTCTCCTTAAT+AGG | + | chr1_3:14422086-14422105 | None:intergenic | 20.0% |
| !!! | AAACTTTTGAAAACTAGTAA+TGG | - | chr1_3:14422503-14422522 | Msa0105810:intron | 20.0% |
| !!! | AAACTTTTGAAAACTAGTAA+TGG | - | chr1_3:14422503-14422522 | Msa0105810:intron | 20.0% |
| !!! | TTTTAACTTTGGTTAGTTTT+TGG | - | chr1_3:14423090-14423109 | Msa0105810:intron | 20.0% |
| !! | GAACACACAAAATAAAAAAA+TGG | + | chr1_3:14423311-14423330 | None:intergenic | 20.0% |
| ! | TTGATGAAATAACGAACAAA+GGG | + | chr1_3:14420409-14420428 | None:intergenic | 25.0% |
| ! | ATTGATGAAATAACGAACAA+AGG | + | chr1_3:14420410-14420429 | None:intergenic | 25.0% |
| ! | TCACATTTCACATATATTCA+AGG | - | chr1_3:14420682-14420701 | Msa0105810:intron | 25.0% |
| ! | ATACAAAGACAAATCAACAA+TGG | + | chr1_3:14420730-14420749 | None:intergenic | 25.0% |
| ! | ATATGTATTTGACTGCTATT+GGG | - | chr1_3:14420826-14420845 | Msa0105810:intron | 25.0% |
| ! | CATAAAAATCATTGATGTTG+CGG | + | chr1_3:14420888-14420907 | None:intergenic | 25.0% |
| !!! | TGGTTTAATTTCAAGTTTTC+AGG | - | chr1_3:14421002-14421021 | Msa0105810:intron | 25.0% |
| ! | ATAAGATCAACAACATTAAG+TGG | + | chr1_3:14421131-14421150 | None:intergenic | 25.0% |
| ! | AAAAAATACCATCACATGAA+TGG | + | chr1_3:14421197-14421216 | None:intergenic | 25.0% |
| ! | ATAATCAATAGCAAAGATTG+AGG | + | chr1_3:14421225-14421244 | None:intergenic | 25.0% |
| ! | GTATTTATCCCTTAAACATT+TGG | - | chr1_3:14421666-14421685 | Msa0105810:intron | 25.0% |
| ! | TTCATGCCTCAATAATAATA+AGG | - | chr1_3:14421772-14421791 | Msa0105810:intron | 25.0% |
| ! | GTTATATTAGATATTGGAGT+TGG | - | chr1_3:14421933-14421952 | Msa0105810:intron | 25.0% |
| ! | TGCTATGTATACTTAGATAT+TGG | + | chr1_3:14422055-14422074 | None:intergenic | 25.0% |
| ! | ATGATATAAATCTGTGAGTA+CGG | - | chr1_3:14422099-14422118 | Msa0105810:intron | 25.0% |
| ! | TTATATGATTGCTTCATCTA+TGG | - | chr1_3:14422369-14422388 | Msa0105810:intron | 25.0% |
| ! | AAAACCAAATAGAAATACGA+CGG | + | chr1_3:14422418-14422437 | None:intergenic | 25.0% |
| !! | TTTTTCTTATAGCCAAAAGT+TGG | - | chr1_3:14422434-14422453 | Msa0105810:intron | 25.0% |
| ! | AATATAGCCAAGAAATCATT+TGG | + | chr1_3:14422481-14422500 | None:intergenic | 25.0% |
| !! | AAAACACTTCCATTTTCATT+TGG | - | chr1_3:14422642-14422661 | Msa0105810:CDS | 25.0% |
| ! | TATCAGATACCAAATGAAAA+TGG | + | chr1_3:14422654-14422673 | None:intergenic | 25.0% |
| !! | ATGCGACATTTTACTTTAAA+AGG | + | chr1_3:14422779-14422798 | None:intergenic | 25.0% |
| ! | GAATTCAAGAGCAATAAAAA+AGG | + | chr1_3:14422828-14422847 | None:intergenic | 25.0% |
| ! | ATTGCTCTTGAATTCAATTA+AGG | - | chr1_3:14422833-14422852 | Msa0105810:CDS | 25.0% |
| !!! | GAATGGTTTTATATTTGACA+CGG | + | chr1_3:14422965-14422984 | None:intergenic | 25.0% |
| ! | TTTACTTTGATATTTCTCCT+TGG | + | chr1_3:14423223-14423242 | None:intergenic | 25.0% |
| ! | ACTGGATTTTGGATGAAAAA+GGG | - | chr1_3:14420212-14420231 | Msa0105810:intron | 30.0% |
| ATTACTCGAGACATTAATGA+TGG | - | chr1_3:14420236-14420255 | Msa0105810:intron | 30.0% | |
| TCCAAGATAGAACATAAAGA+GGG | + | chr1_3:14420291-14420310 | None:intergenic | 30.0% | |
| TTCCAAGATAGAACATAAAG+AGG | + | chr1_3:14420292-14420311 | None:intergenic | 30.0% | |
| TGATGTCACTCGAAAATTTA+AGG | - | chr1_3:14420606-14420625 | Msa0105810:intron | 30.0% | |
| GATGTCACTCGAAAATTTAA+GGG | - | chr1_3:14420607-14420626 | Msa0105810:intron | 30.0% | |
| ATGTCACTCGAAAATTTAAG+GGG | - | chr1_3:14420608-14420627 | Msa0105810:intron | 30.0% | |
| ! | TGGAATATATTTTACCTGCA+GGG | + | chr1_3:14420710-14420729 | None:intergenic | 30.0% |
| ! | ATGGAATATATTTTACCTGC+AGG | + | chr1_3:14420711-14420730 | None:intergenic | 30.0% |
| CATATGTATTTGACTGCTAT+TGG | - | chr1_3:14420825-14420844 | Msa0105810:intron | 30.0% | |
| TAACGATGATGAATTTGTCA+TGG | + | chr1_3:14421382-14421401 | None:intergenic | 30.0% | |
| ! | ATTTTATGGTAGAGACAAGA+AGG | - | chr1_3:14421450-14421469 | Msa0105810:intron | 30.0% |
| !! | CCATGAATTAAGTTCTAAGA+GGG | + | chr1_3:14421711-14421730 | None:intergenic | 30.0% |
| !! | TCCATGAATTAAGTTCTAAG+AGG | + | chr1_3:14421712-14421731 | None:intergenic | 30.0% |
| !! | ATGGAACTTATTTTCTGATG+TGG | - | chr1_3:14421727-14421746 | Msa0105810:intron | 30.0% |
| !!! | AGCTTTTTTCCTCTTTGTTT+TGG | - | chr1_3:14421852-14421871 | Msa0105810:intron | 30.0% |
| !!! | GCTTTTTTCCTCTTTGTTTT+GGG | - | chr1_3:14421853-14421872 | Msa0105810:intron | 30.0% |
| TTGTTTCAATGCCTTATGAA+AGG | - | chr1_3:14421887-14421906 | Msa0105810:intron | 30.0% | |
| GTATACTTAGATATTGGAGT+TGG | + | chr1_3:14422049-14422068 | None:intergenic | 30.0% | |
| ! | TTTTTCTCCTTAATAGGACA+GGG | + | chr1_3:14422080-14422099 | None:intergenic | 30.0% |
| ! | ATTTTTCTCCTTAATAGGAC+AGG | + | chr1_3:14422081-14422100 | None:intergenic | 30.0% |
| !!! | GAGCTTGATTGTTTTTGTTA+TGG | - | chr1_3:14422234-14422253 | Msa0105810:intron | 30.0% |
| ATGGTTTCCAAATGATTTCT+TGG | - | chr1_3:14422471-14422490 | Msa0105810:intron | 30.0% | |
| AGATTGACCATATGATGTTT+AGG | - | chr1_3:14422582-14422601 | Msa0105810:intron | 30.0% | |
| GATTGACCATATGATGTTTA+GGG | - | chr1_3:14422583-14422602 | Msa0105810:intron | 30.0% | |
| AATAATGCACATGCATCAAT+TGG | - | chr1_3:14422734-14422753 | Msa0105810:CDS | 30.0% | |
| ATAATGCACATGCATCAATT+GGG | - | chr1_3:14422735-14422754 | Msa0105810:CDS | 30.0% | |
| ! | GTTTGTTTGTAGTTCTTTTG+AGG | + | chr1_3:14422914-14422933 | None:intergenic | 30.0% |
| AGCAAGATAATTGTTTACGT+TGG | - | chr1_3:14423046-14423065 | Msa0105810:intron | 30.0% | |
| !!! | TCGTTTTCGACTTTTAACTT+TGG | - | chr1_3:14423079-14423098 | Msa0105810:intron | 30.0% |
| ! | GAAGAAATAACTCTTTTGTG+TGG | - | chr1_3:14423164-14423183 | Msa0105810:intron | 30.0% |
| !!! | GTTCGCTATTTTTGTTCCTA+AGG | + | chr1_3:14420031-14420050 | None:intergenic | 35.0% |
| TAGGAACAAAAATAGCGAAC+AGG | - | chr1_3:14420031-14420050 | Msa0105810:intron | 35.0% | |
| ! | GTATAGTAGAAGGAGGTATA+CGG | + | chr1_3:14420125-14420144 | None:intergenic | 35.0% |
| ATTGTCGATGGTATAGTAGA+AGG | + | chr1_3:14420135-14420154 | None:intergenic | 35.0% | |
| ACTATACCATCGACAATTGT+AGG | - | chr1_3:14420138-14420157 | Msa0105810:intron | 35.0% | |
| ! | GACTGGATTTTGGATGAAAA+AGG | - | chr1_3:14420211-14420230 | Msa0105810:intron | 35.0% |
| TCCCTCTTTATGTTCTATCT+TGG | - | chr1_3:14420287-14420306 | Msa0105810:intron | 35.0% | |
| CTATCTTGGAAATTCTGTGA+AGG | - | chr1_3:14420301-14420320 | Msa0105810:intron | 35.0% | |
| GATTATGTACGAGTATGCAT+TGG | - | chr1_3:14420343-14420362 | Msa0105810:intron | 35.0% | |
| AAAACACGGCACAAAACAAA+AGG | + | chr1_3:14420502-14420521 | None:intergenic | 35.0% | |
| ACCTTCTTCAACATCAGATA+AGG | + | chr1_3:14420566-14420585 | None:intergenic | 35.0% | |
| TGTCACTCGAAAATTTAAGG+GGG | - | chr1_3:14420609-14420628 | Msa0105810:intron | 35.0% | |
| ATTATCCCACGAAATTGACA+CGG | + | chr1_3:14421039-14421058 | None:intergenic | 35.0% | |
| GTCAATTTCGTGGGATAATT+TGG | - | chr1_3:14421040-14421059 | Msa0105810:intron | 35.0% | |
| AACTCAATCCATTCATGTGA+TGG | - | chr1_3:14421186-14421205 | Msa0105810:intron | 35.0% | |
| GCAATTTAAGCCTGCAATTA+TGG | - | chr1_3:14421578-14421597 | Msa0105810:intron | 35.0% | |
| ATTTAAGCCTGCAATTATGG+AGG | - | chr1_3:14421581-14421600 | Msa0105810:intron | 35.0% | |
| CCCTCTTAGAACTTAATTCA+TGG | - | chr1_3:14421708-14421727 | Msa0105810:intron | 35.0% | |
| !! | CTTATTTTCTGATGTGGTTG+AGG | - | chr1_3:14421733-14421752 | Msa0105810:intron | 35.0% |
| GTGCAAAATTGCCTTTCATA+AGG | + | chr1_3:14421901-14421920 | None:intergenic | 35.0% | |
| TGAGTACGGATATACAACAA+TGG | - | chr1_3:14422113-14422132 | Msa0105810:intron | 35.0% | |
| AATCACACCAAATGACAAGA+GGG | + | chr1_3:14422289-14422308 | None:intergenic | 35.0% | |
| AAATCACACCAAATGACAAG+AGG | + | chr1_3:14422290-14422309 | None:intergenic | 35.0% | |
| !! | TCTTGTCATTTGGTGTGATT+TGG | - | chr1_3:14422289-14422308 | Msa0105810:intron | 35.0% |
| !! | CTTGTCATTTGGTGTGATTT+GGG | - | chr1_3:14422290-14422309 | Msa0105810:intron | 35.0% |
| ! | AGAACCGTCGTATTTCTATT+TGG | - | chr1_3:14422411-14422430 | Msa0105810:intron | 35.0% |
| ! | GAGTACTAACTTCCAACTTT+TGG | + | chr1_3:14422449-14422468 | None:intergenic | 35.0% |
| GTTGGAAGTTAGTACTCAAA+TGG | - | chr1_3:14422452-14422471 | Msa0105810:intron | 35.0% | |
| TGCATACCCTAAACATCATA+TGG | + | chr1_3:14422592-14422611 | None:intergenic | 35.0% | |
| ! | TGATGTTTAGGGTATGCATA+TGG | - | chr1_3:14422594-14422613 | Msa0105810:intron | 35.0% |
| CTACAAACAAACATTCTTCC+AGG | - | chr1_3:14422922-14422941 | Msa0105810:intron | 35.0% | |
| CAACAAGTATCTCGTCAGTA+GGG | + | chr1_3:14420001-14420020 | None:intergenic | 40.0% | |
| ! | TACTTGTTGGCTACTACCTT+AGG | - | chr1_3:14420012-14420031 | Msa0105810:intron | 40.0% |
| GAACAGGTTCAGAATTTCCA+TGG | - | chr1_3:14420047-14420066 | Msa0105810:intron | 40.0% | |
| GAATTGCCTACAATTGTCGA+TGG | + | chr1_3:14420147-14420166 | None:intergenic | 40.0% | |
| ! | TAATGATGGAGCTGACAATG+TGG | - | chr1_3:14420250-14420269 | Msa0105810:intron | 40.0% |
| TTTCACAAATCCCATACCTG+AGG | + | chr1_3:14420377-14420396 | None:intergenic | 40.0% | |
| GCCTTATCTGATGTTGAAGA+AGG | - | chr1_3:14420562-14420581 | Msa0105810:intron | 40.0% | |
| TTATCCCACGAAATTGACAC+GGG | + | chr1_3:14421038-14421057 | None:intergenic | 40.0% | |
| AGGACGTGATTTGAAGAATC+TGG | + | chr1_3:14421339-14421358 | None:intergenic | 40.0% | |
| ATTGCAGGCTTAAATTGCTC+CGG | + | chr1_3:14421576-14421595 | None:intergenic | 40.0% | |
| AGATCTTCCTCCATAATTGC+AGG | + | chr1_3:14421591-14421610 | None:intergenic | 40.0% | |
| GGATAAATACTCTCAAGAGC+GGG | + | chr1_3:14421656-14421675 | None:intergenic | 40.0% | |
| GGGATAAATACTCTCAAGAG+CGG | + | chr1_3:14421657-14421676 | None:intergenic | 40.0% | |
| ! | TGTGGTTGAGGCAATTTTCA+TGG | - | chr1_3:14421745-14421764 | Msa0105810:intron | 40.0% |
| TAGCATTCCCTGTCCTATTA+AGG | - | chr1_3:14422070-14422089 | Msa0105810:intron | 40.0% | |
| ! | AAACTCCTTTTCCCTTCAGT+TGG | - | chr1_3:14422137-14422156 | Msa0105810:intron | 40.0% |
| ! | AACTCCTTTTCCCTTCAGTT+GGG | - | chr1_3:14422138-14422157 | Msa0105810:intron | 40.0% |
| ACAAACATTCTTCCAGGTTG+AGG | - | chr1_3:14422928-14422947 | Msa0105810:intron | 40.0% | |
| ! | CAAACATTCTTCCAGGTTGA+GGG | - | chr1_3:14422929-14422948 | Msa0105810:intron | 40.0% |
| CCAACAAGTATCTCGTCAGT+AGG | + | chr1_3:14420002-14420021 | None:intergenic | 45.0% | |
| CCTACTGACGAGATACTTGT+TGG | - | chr1_3:14419999-14420018 | Msa0105810:intron | 45.0% | |
| !! | TCCATGGTTCTGACCTCATT+AGG | - | chr1_3:14420063-14420082 | Msa0105810:intron | 45.0% |
| !! | CCATGGTTCTGACCTCATTA+GGG | - | chr1_3:14420064-14420083 | Msa0105810:intron | 45.0% |
| AGGTATACGGCAATTCGATC+GGG | + | chr1_3:14420112-14420131 | None:intergenic | 45.0% | |
| GAGGTATACGGCAATTCGAT+CGG | + | chr1_3:14420113-14420132 | None:intergenic | 45.0% | |
| GTCGATGGTATAGTAGAAGG+AGG | + | chr1_3:14420132-14420151 | None:intergenic | 45.0% | |
| TACTGCTTCACTGCCAAAGT+TGG | - | chr1_3:14420167-14420186 | Msa0105810:intron | 45.0% | |
| ! | TGGAGCTGACAATGTGGTTT+TGG | - | chr1_3:14420256-14420275 | Msa0105810:intron | 45.0% |
| ! | GGAGCTGACAATGTGGTTTT+GGG | - | chr1_3:14420257-14420276 | Msa0105810:intron | 45.0% |
| CTGGAGGGCAATCAAAAACA+CGG | + | chr1_3:14420516-14420535 | None:intergenic | 45.0% | |
| !! | TTTTGATTGCCCTCCAGCTA+TGG | - | chr1_3:14420519-14420538 | Msa0105810:intron | 45.0% |
| ACTCGAAAATTTAAGGGGGC+TGG | - | chr1_3:14420613-14420632 | Msa0105810:intron | 45.0% | |
| CTCGAAAATTTAAGGGGGCT+GGG | - | chr1_3:14420614-14420633 | Msa0105810:intron | 45.0% | |
| TCGAAAATTTAAGGGGGCTG+GGG | - | chr1_3:14420615-14420634 | Msa0105810:intron | 45.0% | |
| ATATATTCAAGGCTCCCTGC+AGG | - | chr1_3:14420693-14420712 | Msa0105810:intron | 45.0% | |
| TTCTTCCCGTGTCAATTTCG+TGG | - | chr1_3:14421030-14421049 | Msa0105810:intron | 45.0% | |
| TCTTCCCGTGTCAATTTCGT+GGG | - | chr1_3:14421031-14421050 | Msa0105810:intron | 45.0% | |
| TGACTATGTTGTCTTCCACG+TGG | - | chr1_3:14421539-14421558 | Msa0105810:intron | 45.0% | |
| !!! | TCCTCTTTGTTTTGGGCATG+CGG | - | chr1_3:14421860-14421879 | Msa0105810:intron | 45.0% |
| ! | GAAAGGCAATTTTGCACGAG+AGG | - | chr1_3:14421904-14421923 | Msa0105810:intron | 45.0% |
| ATCAAGCCAACCCAACTGAA+GGG | + | chr1_3:14422151-14422170 | None:intergenic | 45.0% | |
| AATCAAGCCAACCCAACTGA+AGG | + | chr1_3:14422152-14422171 | None:intergenic | 45.0% | |
| GTACTAGCCCTCTTGTCATT+TGG | - | chr1_3:14422279-14422298 | Msa0105810:intron | 45.0% | |
| TCTTGCTGCTGCATAAGTCA+TGG | + | chr1_3:14423033-14423052 | None:intergenic | 45.0% | |
| CGCATGTCATATAAGCTCCA+AGG | - | chr1_3:14423203-14423222 | Msa0105810:intron | 45.0% | |
| !! | TATAATAATTATATTATGAA+TGG | + | chr1_3:14422982-14423001 | None:intergenic | 5.0% |
| !! | ATATAATTATTATAATTATG+TGG | - | chr1_3:14422988-14423007 | Msa0105810:intron | 5.0% |
| CCCTAATGAGGTCAGAACCA+TGG | + | chr1_3:14420067-14420086 | None:intergenic | 50.0% | |
| ACAGGTTCAGCTCCCTAATG+AGG | + | chr1_3:14420079-14420098 | None:intergenic | 50.0% | |
| CGATCGGGTCATACTCATAC+AGG | + | chr1_3:14420097-14420116 | None:intergenic | 50.0% | |
| CCAAAGTTGGCAGTGAGAGA+CGG | - | chr1_3:14420180-14420199 | Msa0105810:intron | 50.0% | |
| AGGACGCTGTCAGAACAAAC+TGG | - | chr1_3:14420321-14420340 | Msa0105810:intron | 50.0% | |
| ATGGATCTGGGTGCAGAGTT+TGG | - | chr1_3:14420538-14420557 | Msa0105810:intron | 50.0% | |
| GTTGAAGAAGGTGATGCTGC+TGG | - | chr1_3:14420574-14420593 | Msa0105810:intron | 50.0% | |
| !! | CTGGTAGTAGTGATGGTGGT+GGG | - | chr1_3:14420638-14420657 | Msa0105810:intron | 50.0% |
| !! | TGGTAGTAGTGATGGTGGTG+GGG | - | chr1_3:14420639-14420658 | Msa0105810:intron | 50.0% |
| TCCGCATGCCCAAAACAAAG+AGG | + | chr1_3:14421864-14421883 | None:intergenic | 50.0% | |
| CCAACCCAACTGAAGGGAAA+AGG | + | chr1_3:14422145-14422164 | None:intergenic | 50.0% | |
| ! | CCTTTTCCCTTCAGTTGGGT+TGG | - | chr1_3:14422142-14422161 | Msa0105810:intron | 50.0% |
| TATGGTTATGCCTTTGCCCG+AGG | - | chr1_3:14422252-14422271 | Msa0105810:intron | 50.0% | |
| ATGGTTATGCCTTTGCCCGA+GGG | - | chr1_3:14422253-14422272 | Msa0105810:intron | 50.0% | |
| ! | TTCTTCCAGGTTGAGGGTGT+TGG | - | chr1_3:14422935-14422954 | Msa0105810:intron | 50.0% |
| GTATTCCAACACCCTCAACC+TGG | + | chr1_3:14422943-14422962 | None:intergenic | 50.0% | |
| CCGTCTCTCACTGCCAACTT+TGG | + | chr1_3:14420183-14420202 | None:intergenic | 55.0% | |
| ! | GGCACTGCAGGACTGGATTT+TGG | - | chr1_3:14420201-14420220 | Msa0105810:intron | 55.0% |
| TTGCCCTCCAGCTATGGATC+TGG | - | chr1_3:14420525-14420544 | Msa0105810:intron | 55.0% | |
| TGCCCTCCAGCTATGGATCT+GGG | - | chr1_3:14420526-14420545 | Msa0105810:intron | 55.0% | |
| CACCCAGATCCATAGCTGGA+GGG | + | chr1_3:14420531-14420550 | None:intergenic | 55.0% | |
| TCTGCACCCAGATCCATAGC+TGG | + | chr1_3:14420535-14420554 | None:intergenic | 55.0% | |
| AAATTTAAGGGGGCTGGGGC+TGG | - | chr1_3:14420619-14420638 | Msa0105810:intron | 55.0% | |
| !! | GCTGGTAGTAGTGATGGTGG+TGG | - | chr1_3:14420637-14420656 | Msa0105810:intron | 55.0% |
| CCATGCTTCCACCTGGTGCT+GGG | - | chr1_3:14419970-14419989 | Msa0105810:intron | 60.0% | |
| GTAGGGAGAAACCCAGCACC+AGG | + | chr1_3:14419984-14420003 | None:intergenic | 60.0% | |
| !! | TGCATTGGCTGACGAGCCTC+AGG | - | chr1_3:14420358-14420377 | Msa0105810:intron | 60.0% |
| TGGCTGACGAGCCTCAGGTA+TGG | - | chr1_3:14420363-14420382 | Msa0105810:intron | 60.0% | |
| GGCTGACGAGCCTCAGGTAT+GGG | - | chr1_3:14420364-14420383 | Msa0105810:intron | 60.0% | |
| GCACCCAGATCCATAGCTGG+AGG | + | chr1_3:14420532-14420551 | None:intergenic | 60.0% | |
| ! | GCTGGGGCTGGTAGTAGTGA+TGG | - | chr1_3:14420631-14420650 | Msa0105810:intron | 60.0% |
| ! | GGGGCTGGTAGTAGTGATGG+TGG | - | chr1_3:14420634-14420653 | Msa0105810:intron | 60.0% |
| CCACGTGGAAGCTATGACGC+CGG | - | chr1_3:14421554-14421573 | Msa0105810:intron | 60.0% | |
| TAGTACACGCCCTCGGGCAA+AGG | + | chr1_3:14422265-14422284 | None:intergenic | 60.0% | |
| ! | AGAGGGCTAGTACACGCCCT+CGG | + | chr1_3:14422272-14422291 | None:intergenic | 60.0% |
| GCCATGCTTCCACCTGGTGC+TGG | - | chr1_3:14419969-14419988 | Msa0105810:intron | 65.0% | |
| CCCAGCACCAGGTGGAAGCA+TGG | + | chr1_3:14419973-14419992 | None:intergenic | 65.0% | |
| GGGAGAAACCCAGCACCAGG+TGG | + | chr1_3:14419981-14420000 | None:intergenic | 65.0% | |
| GCAGTGAGAGACGGCACTGC+AGG | - | chr1_3:14420189-14420208 | Msa0105810:intron | 65.0% | |
| GAGAGACGGCACTGCAGGAC+TGG | - | chr1_3:14420194-14420213 | Msa0105810:intron | 65.0% | |
| CCGGCGTCATAGCTTCCACG+TGG | + | chr1_3:14421557-14421576 | None:intergenic | 65.0% | |
| ! | GAGGGCTAGTACACGCCCTC+GGG | + | chr1_3:14422271-14422290 | None:intergenic | 65.0% |
| !! | GGTGGTGGGGCTGCTGAGCA+AGG | - | chr1_3:14420652-14420671 | Msa0105810:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 14419966 | 14423384 | 14419966 | ID=Msa0105810;Name=Msa0105810 |
| chr1_3 | mRNA | 14419966 | 14423384 | 14419966 | ID=Msa0105810-mRNA-1;Parent=Msa0105810;Name=Msa0105810-mRNA-1;_AED=0.52;_eAED=0.52;_QI=0|0|0|0.25|1|1|4|0|106 |
| chr1_3 | exon | 14423298 | 14423384 | 14423298 | ID=Msa0105810-mRNA-1:exon:5679;Parent=Msa0105810-mRNA-1 |
| chr1_3 | exon | 14422636 | 14422854 | 14422636 | ID=Msa0105810-mRNA-1:exon:5678;Parent=Msa0105810-mRNA-1 |
| chr1_3 | exon | 14420899 | 14420904 | 14420899 | ID=Msa0105810-mRNA-1:exon:5677;Parent=Msa0105810-mRNA-1 |
| chr1_3 | exon | 14419966 | 14419974 | 14419966 | ID=Msa0105810-mRNA-1:exon:5676;Parent=Msa0105810-mRNA-1 |
| chr1_3 | CDS | 14423298 | 14423384 | 14423298 | ID=Msa0105810-mRNA-1:cds;Parent=Msa0105810-mRNA-1 |
| chr1_3 | CDS | 14422636 | 14422854 | 14422636 | ID=Msa0105810-mRNA-1:cds;Parent=Msa0105810-mRNA-1 |
| chr1_3 | CDS | 14420899 | 14420904 | 14420899 | ID=Msa0105810-mRNA-1:cds;Parent=Msa0105810-mRNA-1 |
| chr1_3 | CDS | 14419966 | 14419974 | 14419966 | ID=Msa0105810-mRNA-1:cds;Parent=Msa0105810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
