Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0105950 | XP_039688138.1 | 82.474 | 194 | 13 | 2 | 4 | 178 | 1 | 192 | 4.34e-109 | 319 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0105950 | sp|Q1G3Q4|RITF1_ARATH | 33.582 | 134 | 63 | 5 | 13 | 125 | 5 | 133 | 8.00e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0105950 | A0A072VGU3 | 68.557 | 194 | 13 | 3 | 4 | 178 | 1 | 165 | 3.48e-81 | 247 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0105950 | TF | PLATZ |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0105950 | MtrunA17_Chr1g0161601 | 92.958 | 71 | 5 | 0 | 4 | 74 | 38 | 108 | 9.38e-46 | 147 |
| Msa0105950 | MtrunA17_Chr8g0392151 | 36.564 | 227 | 78 | 4 | 15 | 175 | 14 | 240 | 5.01e-41 | 138 |
| Msa0105950 | MtrunA17_Chr7g0230511 | 37.681 | 138 | 59 | 5 | 8 | 124 | 3 | 134 | 9.00e-18 | 77.8 |
| Msa0105950 | MtrunA17_Chr2g0297251 | 30.625 | 160 | 82 | 6 | 13 | 148 | 36 | 190 | 3.87e-12 | 62.8 |
| Msa0105950 | MtrunA17_Chr4g0065041 | 33.333 | 132 | 62 | 5 | 13 | 123 | 7 | 133 | 5.36e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0105950 | AT2G01818.1 | 37.857 | 140 | 59 | 6 | 12 | 124 | 9 | 147 | 2.83e-18 | 79.3 |
| Msa0105950 | AT3G60670.1 | 35.385 | 130 | 58 | 5 | 16 | 124 | 9 | 133 | 7.64e-15 | 70.5 |
| Msa0105950 | AT2G12646.3 | 33.582 | 134 | 63 | 5 | 13 | 125 | 2 | 130 | 7.53e-12 | 62.4 |
| Msa0105950 | AT2G12646.1 | 33.582 | 134 | 63 | 5 | 13 | 125 | 5 | 133 | 8.14e-12 | 62.4 |
| Msa0105950 | AT2G12646.2 | 33.582 | 134 | 63 | 5 | 13 | 125 | 5 | 133 | 8.14e-12 | 62.4 |
Find 20 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGACTCAGCCTCTGAATTT+TGG | 0.202823 | 1_3:-14824983 | None:intergenic |
| GACATAATAAGAAATTATTT+TGG | 0.228583 | 1_3:+14825200 | Msa0105950:three_prime_UTR |
| AAACTAGAGATAGATCTTAT+AGG | 0.311632 | 1_3:-14825077 | None:intergenic |
| TACCAAATGGAAAAGAAGAT+TGG | 0.357613 | 1_3:+14823291 | Msa0105950:CDS |
| TGTTGTTACCTTGCATTTGA+TGG | 0.360512 | 1_3:-14824567 | None:intergenic |
| TGTCTTTGCTACTGCTAGTC+GGG | 0.379634 | 1_3:-14824465 | None:intergenic |
| ACTCTTTCACCAGATTCATT+TGG | 0.414956 | 1_3:-14825023 | None:intergenic |
| AGTGTTGAACCAAATGAATC+TGG | 0.451883 | 1_3:+14825014 | Msa0105950:CDS |
| TAGATCTCAATTGAGGAGCT+TGG | 0.455572 | 1_3:+14824942 | Msa0105950:intron |
| ATGTCTTTGCTACTGCTAGT+CGG | 0.459833 | 1_3:-14824466 | None:intergenic |
| GTGAAGCGTAGTTTACCAAA+TGG | 0.503152 | 1_3:+14823278 | Msa0105950:CDS |
| ATCTCATTCACTTCATCGAA+AGG | 0.526413 | 1_3:+14823430 | Msa0105950:CDS |
| TCAACATCTCAAAAGCAAGC+TGG | 0.568852 | 1_3:+14824488 | Msa0105950:CDS |
| GTATTGTTAGATCTCAATTG+AGG | 0.590386 | 1_3:+14824935 | Msa0105950:intron |
| TGAATTTGAGAAAGCGCCCA+AGG | 0.601035 | 1_3:+14825045 | Msa0105950:CDS |
| GTCTTTGCTACTGCTAGTCG+GGG | 0.609471 | 1_3:-14824464 | None:intergenic |
| ATTCTGTTCCATCAAATGCA+AGG | 0.611685 | 1_3:+14824559 | Msa0105950:CDS |
| AAATGATCACCAAAATTCAG+AGG | 0.644619 | 1_3:+14824974 | Msa0105950:CDS |
| ACATCTCAAAAGCAAGCTGG+AGG | 0.654193 | 1_3:+14824491 | Msa0105950:CDS |
| GGAGGAATTTGTGAAGAATG+TGG | 0.710538 | 1_3:+14824509 | Msa0105950:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATAAACTTGTAATATA+TGG | - | chr1_3:14823081-14823100 | None:intergenic | 10.0% |
| !! | ATAATTCAATAAATAAACTT+TGG | - | chr1_3:14823248-14823267 | None:intergenic | 10.0% |
| !! | AACTACAATTAATAAAAAAA+GGG | - | chr1_3:14824056-14824075 | None:intergenic | 10.0% |
| !! | AAACTACAATTAATAAAAAA+AGG | - | chr1_3:14824057-14824076 | None:intergenic | 10.0% |
| !! | ATGATAAAAAAGAATTTATA+AGG | - | chr1_3:14824688-14824707 | None:intergenic | 10.0% |
| !!! | TAATTAACAATTTTTTGTTT+TGG | - | chr1_3:14824825-14824844 | None:intergenic | 10.0% |
| !! | TAAAATAAACTTGTAATATA+TGG | - | chr1_3:14823081-14823100 | None:intergenic | 10.0% |
| !! | ATAATTCAATAAATAAACTT+TGG | - | chr1_3:14823248-14823267 | None:intergenic | 10.0% |
| !! | AACTACAATTAATAAAAAAA+GGG | - | chr1_3:14824056-14824075 | None:intergenic | 10.0% |
| !! | AAACTACAATTAATAAAAAA+AGG | - | chr1_3:14824057-14824076 | None:intergenic | 10.0% |
| !! | ATGATAAAAAAGAATTTATA+AGG | - | chr1_3:14824688-14824707 | None:intergenic | 10.0% |
| !!! | TAATTAACAATTTTTTGTTT+TGG | - | chr1_3:14824825-14824844 | None:intergenic | 10.0% |
| !!! | GAATTTATAGAATTTTTAAG+TGG | + | chr1_3:14823896-14823915 | Msa0105950:intron | 15.0% |
| !!! | GATTTTTTTCAAATTATTAG+CGG | - | chr1_3:14824220-14824239 | None:intergenic | 15.0% |
| !! | GAAACTAAAACAAAATAATA+AGG | - | chr1_3:14824740-14824759 | None:intergenic | 15.0% |
| !! | ACAAAAAATTGTTAATTAGT+AGG | + | chr1_3:14824827-14824846 | Msa0105950:intron | 15.0% |
| !! | CAAAAAATTGTTAATTAGTA+GGG | + | chr1_3:14824828-14824847 | Msa0105950:intron | 15.0% |
| !! | TTCACATTAAAATAAAATGT+AGG | - | chr1_3:14824883-14824902 | None:intergenic | 15.0% |
| !!! | GACATAATAAGAAATTATTT+TGG | + | chr1_3:14825200-14825219 | Msa0105950:three_prime_UTR | 15.0% |
| !!! | GAATTTATAGAATTTTTAAG+TGG | + | chr1_3:14823896-14823915 | Msa0105950:intron | 15.0% |
| !!! | GATTTTTTTCAAATTATTAG+CGG | - | chr1_3:14824220-14824239 | None:intergenic | 15.0% |
| !! | GAAACTAAAACAAAATAATA+AGG | - | chr1_3:14824740-14824759 | None:intergenic | 15.0% |
| !! | ACAAAAAATTGTTAATTAGT+AGG | + | chr1_3:14824827-14824846 | Msa0105950:intron | 15.0% |
| !! | CAAAAAATTGTTAATTAGTA+GGG | + | chr1_3:14824828-14824847 | Msa0105950:intron | 15.0% |
| !! | TTCACATTAAAATAAAATGT+AGG | - | chr1_3:14824883-14824902 | None:intergenic | 15.0% |
| !!! | GACATAATAAGAAATTATTT+TGG | + | chr1_3:14825200-14825219 | Msa0105950:three_prime_UTR | 15.0% |
| !!! | CTAAAATTTTAACACAAGAT+GGG | - | chr1_3:14823056-14823075 | None:intergenic | 20.0% |
| !!! | ACTAAAATTTTAACACAAGA+TGG | - | chr1_3:14823057-14823076 | None:intergenic | 20.0% |
| !!! | TTCTTGTAATTTGATAATAG+TGG | + | chr1_3:14823161-14823180 | Msa0105950:intron | 20.0% |
| !!! | TTATTGAATTATTTTGCAGA+TGG | + | chr1_3:14823256-14823275 | Msa0105950:intron | 20.0% |
| !! | TCTATTTATATGGGAAAATT+GGG | - | chr1_3:14823662-14823681 | None:intergenic | 20.0% |
| !! | TTCTATTTATATGGGAAAAT+TGG | - | chr1_3:14823663-14823682 | None:intergenic | 20.0% |
| !! | TTCAATGTAACTATATGTAT+CGG | + | chr1_3:14824246-14824265 | Msa0105950:intron | 20.0% |
| !!! | TGAAACTGATTTAAAATCTA+AGG | + | chr1_3:14824778-14824797 | Msa0105950:intron | 20.0% |
| !!! | CTAAAATTTTAACACAAGAT+GGG | - | chr1_3:14823056-14823075 | None:intergenic | 20.0% |
| !!! | ACTAAAATTTTAACACAAGA+TGG | - | chr1_3:14823057-14823076 | None:intergenic | 20.0% |
| !!! | TTCTTGTAATTTGATAATAG+TGG | + | chr1_3:14823161-14823180 | Msa0105950:intron | 20.0% |
| !!! | TTATTGAATTATTTTGCAGA+TGG | + | chr1_3:14823256-14823275 | Msa0105950:intron | 20.0% |
| !! | TCTATTTATATGGGAAAATT+GGG | - | chr1_3:14823662-14823681 | None:intergenic | 20.0% |
| !! | TTCTATTTATATGGGAAAAT+TGG | - | chr1_3:14823663-14823682 | None:intergenic | 20.0% |
| !! | TTCAATGTAACTATATGTAT+CGG | + | chr1_3:14824246-14824265 | Msa0105950:intron | 20.0% |
| !!! | TGAAACTGATTTAAAATCTA+AGG | + | chr1_3:14824778-14824797 | Msa0105950:intron | 20.0% |
| !!! | GTTTATTTTACTTGCAAAAG+TGG | + | chr1_3:14823091-14823110 | Msa0105950:intron | 25.0% |
| !!! | TTGATTCACTTTTGATAGAT+AGG | + | chr1_3:14823315-14823334 | Msa0105950:CDS | 25.0% |
| !! | TCTCATTAAACTTTTCTTTG+TGG | - | chr1_3:14823358-14823377 | None:intergenic | 25.0% |
| !!! | TTTTGATTGCTCATATATTC+AGG | + | chr1_3:14823511-14823530 | Msa0105950:intron | 25.0% |
| !! | TTTTCCCATATAAATAGAAC+TGG | + | chr1_3:14823664-14823683 | Msa0105950:intron | 25.0% |
| ! | ATCTCCAGTTCTATTTATAT+GGG | - | chr1_3:14823671-14823690 | None:intergenic | 25.0% |
| ! | TATCTCCAGTTCTATTTATA+TGG | - | chr1_3:14823672-14823691 | None:intergenic | 25.0% |
| !! | GAATTGATTCACTCAATAAA+TGG | - | chr1_3:14823782-14823801 | None:intergenic | 25.0% |
| ! | GTTTCTTAATTGTAATCTGA+TGG | + | chr1_3:14823803-14823822 | Msa0105950:intron | 25.0% |
| ! | AAATGATAACCATTGATGAA+TGG | + | chr1_3:14823874-14823893 | Msa0105950:intron | 25.0% |
| ! | CTATAAATTCCATTCATCAA+TGG | - | chr1_3:14823886-14823905 | None:intergenic | 25.0% |
| ! | TTCTATTAACTATTCTCCAT+TGG | + | chr1_3:14823946-14823965 | Msa0105950:intron | 25.0% |
| !!! | ATTTCATAAGGGTTGATATT+AGG | - | chr1_3:14824145-14824164 | None:intergenic | 25.0% |
| ! | ATATCAACCCTTATGAAATA+CGG | + | chr1_3:14824146-14824165 | Msa0105950:intron | 25.0% |
| !! | ATAAATCCATGTTACTTCTA+AGG | - | chr1_3:14824348-14824367 | None:intergenic | 25.0% |
| ! | AAACTAGAGATAGATCTTAT+AGG | - | chr1_3:14825080-14825099 | None:intergenic | 25.0% |
| !!! | GTTTATTTTACTTGCAAAAG+TGG | + | chr1_3:14823091-14823110 | Msa0105950:intron | 25.0% |
| !!! | TTGATTCACTTTTGATAGAT+AGG | + | chr1_3:14823315-14823334 | Msa0105950:CDS | 25.0% |
| !! | TCTCATTAAACTTTTCTTTG+TGG | - | chr1_3:14823358-14823377 | None:intergenic | 25.0% |
| !!! | TTTTGATTGCTCATATATTC+AGG | + | chr1_3:14823511-14823530 | Msa0105950:intron | 25.0% |
| !! | TTTTCCCATATAAATAGAAC+TGG | + | chr1_3:14823664-14823683 | Msa0105950:intron | 25.0% |
| ! | ATCTCCAGTTCTATTTATAT+GGG | - | chr1_3:14823671-14823690 | None:intergenic | 25.0% |
| ! | TATCTCCAGTTCTATTTATA+TGG | - | chr1_3:14823672-14823691 | None:intergenic | 25.0% |
| !! | GAATTGATTCACTCAATAAA+TGG | - | chr1_3:14823782-14823801 | None:intergenic | 25.0% |
| ! | GTTTCTTAATTGTAATCTGA+TGG | + | chr1_3:14823803-14823822 | Msa0105950:intron | 25.0% |
| ! | AAATGATAACCATTGATGAA+TGG | + | chr1_3:14823874-14823893 | Msa0105950:intron | 25.0% |
| ! | CTATAAATTCCATTCATCAA+TGG | - | chr1_3:14823886-14823905 | None:intergenic | 25.0% |
| ! | TTCTATTAACTATTCTCCAT+TGG | + | chr1_3:14823946-14823965 | Msa0105950:intron | 25.0% |
| !!! | ATTTCATAAGGGTTGATATT+AGG | - | chr1_3:14824145-14824164 | None:intergenic | 25.0% |
| ! | ATATCAACCCTTATGAAATA+CGG | + | chr1_3:14824146-14824165 | Msa0105950:intron | 25.0% |
| !! | ATAAATCCATGTTACTTCTA+AGG | - | chr1_3:14824348-14824367 | None:intergenic | 25.0% |
| ! | AAACTAGAGATAGATCTTAT+AGG | - | chr1_3:14825080-14825099 | None:intergenic | 25.0% |
| GAACACAAATTCAATGATCA+AGG | - | chr1_3:14823199-14823218 | None:intergenic | 30.0% | |
| TACCAAATGGAAAAGAAGAT+TGG | + | chr1_3:14823291-14823310 | Msa0105950:CDS | 30.0% | |
| !! | TCACTTTTGATAGATAGGTT+TGG | + | chr1_3:14823320-14823339 | Msa0105950:CDS | 30.0% |
| !! | TGAGAAGAATGTGTTTTGTT+TGG | + | chr1_3:14823373-14823392 | Msa0105950:CDS | 30.0% |
| !!! | AATGTGTTTTGTTTGGATTG+TGG | + | chr1_3:14823380-14823399 | Msa0105950:CDS | 30.0% |
| ! | ATTGTGGAATCAGTTTTTGT+AGG | + | chr1_3:14823396-14823415 | Msa0105950:CDS | 30.0% |
| ! | CAGTTTTTGTAGGTATGATA+AGG | + | chr1_3:14823406-14823425 | Msa0105950:CDS | 30.0% |
| AGCAATCAAAATACTTGAGT+AGG | - | chr1_3:14823502-14823521 | None:intergenic | 30.0% | |
| !! | GTTCTTTTCTCTCTACTTTT+TGG | + | chr1_3:14823533-14823552 | Msa0105950:intron | 30.0% |
| !! | TCAACAAAAGTTGATGTAAC+TGG | + | chr1_3:14823600-14823619 | Msa0105950:intron | 30.0% |
| !! | ATTGATCTAATTTGCTCTGA+TGG | + | chr1_3:14823756-14823775 | Msa0105950:intron | 30.0% |
| TTGTAGTTTGAGCATATTGT+TGG | + | chr1_3:14824068-14824087 | Msa0105950:intron | 30.0% | |
| !! | ATAAGGGTTGATATTAGGTT+CGG | - | chr1_3:14824140-14824159 | None:intergenic | 30.0% |
| ATCAAACCTTAGAAGTAACA+TGG | + | chr1_3:14824339-14824358 | Msa0105950:intron | 30.0% | |
| !! | CTATGCTTTTTGTCAATGAA+AGG | + | chr1_3:14824614-14824633 | Msa0105950:intron | 30.0% |
| AGGACTACAACAAAACTATA+AGG | + | chr1_3:14824798-14824817 | Msa0105950:intron | 30.0% | |
| GTATTGTTAGATCTCAATTG+AGG | + | chr1_3:14824935-14824954 | Msa0105950:intron | 30.0% | |
| !! | CTGAATTTTGGTGATCATTT+TGG | - | chr1_3:14824974-14824993 | None:intergenic | 30.0% |
| AAATGATCACCAAAATTCAG+AGG | + | chr1_3:14824974-14824993 | Msa0105950:CDS | 30.0% | |
| GAACACAAATTCAATGATCA+AGG | - | chr1_3:14823199-14823218 | None:intergenic | 30.0% | |
| TACCAAATGGAAAAGAAGAT+TGG | + | chr1_3:14823291-14823310 | Msa0105950:CDS | 30.0% | |
| !! | TCACTTTTGATAGATAGGTT+TGG | + | chr1_3:14823320-14823339 | Msa0105950:CDS | 30.0% |
| !! | TGAGAAGAATGTGTTTTGTT+TGG | + | chr1_3:14823373-14823392 | Msa0105950:CDS | 30.0% |
| !!! | AATGTGTTTTGTTTGGATTG+TGG | + | chr1_3:14823380-14823399 | Msa0105950:CDS | 30.0% |
| ! | ATTGTGGAATCAGTTTTTGT+AGG | + | chr1_3:14823396-14823415 | Msa0105950:CDS | 30.0% |
| ! | CAGTTTTTGTAGGTATGATA+AGG | + | chr1_3:14823406-14823425 | Msa0105950:CDS | 30.0% |
| AGCAATCAAAATACTTGAGT+AGG | - | chr1_3:14823502-14823521 | None:intergenic | 30.0% | |
| !! | GTTCTTTTCTCTCTACTTTT+TGG | + | chr1_3:14823533-14823552 | Msa0105950:intron | 30.0% |
| !! | TCAACAAAAGTTGATGTAAC+TGG | + | chr1_3:14823600-14823619 | Msa0105950:intron | 30.0% |
| !! | ATTGATCTAATTTGCTCTGA+TGG | + | chr1_3:14823756-14823775 | Msa0105950:intron | 30.0% |
| TTGTAGTTTGAGCATATTGT+TGG | + | chr1_3:14824068-14824087 | Msa0105950:intron | 30.0% | |
| !! | ATAAGGGTTGATATTAGGTT+CGG | - | chr1_3:14824140-14824159 | None:intergenic | 30.0% |
| ATCAAACCTTAGAAGTAACA+TGG | + | chr1_3:14824339-14824358 | Msa0105950:intron | 30.0% | |
| !! | CTATGCTTTTTGTCAATGAA+AGG | + | chr1_3:14824614-14824633 | Msa0105950:intron | 30.0% |
| AGGACTACAACAAAACTATA+AGG | + | chr1_3:14824798-14824817 | Msa0105950:intron | 30.0% | |
| GTATTGTTAGATCTCAATTG+AGG | + | chr1_3:14824935-14824954 | Msa0105950:intron | 30.0% | |
| !! | CTGAATTTTGGTGATCATTT+TGG | - | chr1_3:14824974-14824993 | None:intergenic | 30.0% |
| AAATGATCACCAAAATTCAG+AGG | + | chr1_3:14824974-14824993 | Msa0105950:CDS | 30.0% | |
| ! | ACTTGCAAAAGTGGTTTTCT+TGG | + | chr1_3:14823100-14823119 | Msa0105950:intron | 35.0% |
| ! | AGCCAATCTTCTTTTCCATT+TGG | - | chr1_3:14823296-14823315 | None:intergenic | 35.0% |
| ATCTCATTCACTTCATCGAA+AGG | + | chr1_3:14823430-14823449 | Msa0105950:CDS | 35.0% | |
| TAACTATTCTCCATTGGTCA+TGG | + | chr1_3:14823952-14823971 | Msa0105950:intron | 35.0% | |
| TCTGTGTCCGTATTTCATAA+GGG | - | chr1_3:14824156-14824175 | None:intergenic | 35.0% | |
| ATCAGTGTTTGTGTTGTGTT+TGG | - | chr1_3:14824187-14824206 | None:intergenic | 35.0% | |
| !! | TATATGTATCGGTGTTGTGT+CGG | + | chr1_3:14824257-14824276 | Msa0105950:intron | 35.0% |
| CACGTTGTAAGTACAAAGTT+AGG | - | chr1_3:14824391-14824410 | None:intergenic | 35.0% | |
| ATTCTGTTCCATCAAATGCA+AGG | + | chr1_3:14824559-14824578 | Msa0105950:CDS | 35.0% | |
| TGTTGTTACCTTGCATTTGA+TGG | - | chr1_3:14824570-14824589 | None:intergenic | 35.0% | |
| ! | AGTGTTGAACCAAATGAATC+TGG | + | chr1_3:14825014-14825033 | Msa0105950:CDS | 35.0% |
| ACTCTTTCACCAGATTCATT+TGG | - | chr1_3:14825026-14825045 | None:intergenic | 35.0% | |
| !!! | TTATAGGAGTGCTTTTCCTT+GGG | - | chr1_3:14825064-14825083 | None:intergenic | 35.0% |
| !!! | TGCAACTTTTTCAGAAACAC+AGG | + | chr1_3:14825167-14825186 | Msa0105950:three_prime_UTR | 35.0% |
| ! | ACTTGCAAAAGTGGTTTTCT+TGG | + | chr1_3:14823100-14823119 | Msa0105950:intron | 35.0% |
| ! | AGCCAATCTTCTTTTCCATT+TGG | - | chr1_3:14823296-14823315 | None:intergenic | 35.0% |
| ATCTCATTCACTTCATCGAA+AGG | + | chr1_3:14823430-14823449 | Msa0105950:CDS | 35.0% | |
| TAACTATTCTCCATTGGTCA+TGG | + | chr1_3:14823952-14823971 | Msa0105950:intron | 35.0% | |
| TCTGTGTCCGTATTTCATAA+GGG | - | chr1_3:14824156-14824175 | None:intergenic | 35.0% | |
| ATCAGTGTTTGTGTTGTGTT+TGG | - | chr1_3:14824187-14824206 | None:intergenic | 35.0% | |
| !! | TATATGTATCGGTGTTGTGT+CGG | + | chr1_3:14824257-14824276 | Msa0105950:intron | 35.0% |
| CACGTTGTAAGTACAAAGTT+AGG | - | chr1_3:14824391-14824410 | None:intergenic | 35.0% | |
| ATTCTGTTCCATCAAATGCA+AGG | + | chr1_3:14824559-14824578 | Msa0105950:CDS | 35.0% | |
| TGTTGTTACCTTGCATTTGA+TGG | - | chr1_3:14824570-14824589 | None:intergenic | 35.0% | |
| ! | AGTGTTGAACCAAATGAATC+TGG | + | chr1_3:14825014-14825033 | Msa0105950:CDS | 35.0% |
| ACTCTTTCACCAGATTCATT+TGG | - | chr1_3:14825026-14825045 | None:intergenic | 35.0% | |
| !!! | TTATAGGAGTGCTTTTCCTT+GGG | - | chr1_3:14825064-14825083 | None:intergenic | 35.0% |
| !!! | TGCAACTTTTTCAGAAACAC+AGG | + | chr1_3:14825167-14825186 | Msa0105950:three_prime_UTR | 35.0% |
| GTGAAGCGTAGTTTACCAAA+TGG | + | chr1_3:14823278-14823297 | Msa0105950:CDS | 40.0% | |
| GTCTGTGTCCGTATTTCATA+AGG | - | chr1_3:14824157-14824176 | None:intergenic | 40.0% | |
| !! | CTTCTAAGGTTTGATCTACG+AGG | - | chr1_3:14824334-14824353 | None:intergenic | 40.0% |
| ATGTCTTTGCTACTGCTAGT+CGG | - | chr1_3:14824469-14824488 | None:intergenic | 40.0% | |
| TCAACATCTCAAAAGCAAGC+TGG | + | chr1_3:14824488-14824507 | Msa0105950:CDS | 40.0% | |
| GGAGGAATTTGTGAAGAATG+TGG | + | chr1_3:14824509-14824528 | Msa0105950:CDS | 40.0% | |
| TAGATCTCAATTGAGGAGCT+TGG | + | chr1_3:14824942-14824961 | Msa0105950:intron | 40.0% | |
| ! | ATGACTCAGCCTCTGAATTT+TGG | - | chr1_3:14824986-14825005 | None:intergenic | 40.0% |
| !!! | CTTATAGGAGTGCTTTTCCT+TGG | - | chr1_3:14825065-14825084 | None:intergenic | 40.0% |
| GTGAAGCGTAGTTTACCAAA+TGG | + | chr1_3:14823278-14823297 | Msa0105950:CDS | 40.0% | |
| GTCTGTGTCCGTATTTCATA+AGG | - | chr1_3:14824157-14824176 | None:intergenic | 40.0% | |
| !! | CTTCTAAGGTTTGATCTACG+AGG | - | chr1_3:14824334-14824353 | None:intergenic | 40.0% |
| ATGTCTTTGCTACTGCTAGT+CGG | - | chr1_3:14824469-14824488 | None:intergenic | 40.0% | |
| TCAACATCTCAAAAGCAAGC+TGG | + | chr1_3:14824488-14824507 | Msa0105950:CDS | 40.0% | |
| GGAGGAATTTGTGAAGAATG+TGG | + | chr1_3:14824509-14824528 | Msa0105950:CDS | 40.0% | |
| TAGATCTCAATTGAGGAGCT+TGG | + | chr1_3:14824942-14824961 | Msa0105950:intron | 40.0% | |
| ! | ATGACTCAGCCTCTGAATTT+TGG | - | chr1_3:14824986-14825005 | None:intergenic | 40.0% |
| !!! | CTTATAGGAGTGCTTTTCCT+TGG | - | chr1_3:14825065-14825084 | None:intergenic | 40.0% |
| TGTTGACCTAACTTTCGCTC+AGG | - | chr1_3:14823586-14823605 | None:intergenic | 45.0% | |
| ! | TCCATTGGTCATGGTCTTGA+TGG | + | chr1_3:14823961-14823980 | Msa0105950:intron | 45.0% |
| ACCATCAAGACCATGACCAA+TGG | - | chr1_3:14823965-14823984 | None:intergenic | 45.0% | |
| ! | GATTCAACGTGTCTTGGTGT+CGG | - | chr1_3:14824296-14824315 | None:intergenic | 45.0% |
| TCTTCGGATTCAACGTGTCT+TGG | - | chr1_3:14824302-14824321 | None:intergenic | 45.0% | |
| AAGGTTTGATCTACGAGGCA+CGG | - | chr1_3:14824329-14824348 | None:intergenic | 45.0% | |
| TGTCTTTGCTACTGCTAGTC+GGG | - | chr1_3:14824468-14824487 | None:intergenic | 45.0% | |
| ACATCTCAAAAGCAAGCTGG+AGG | + | chr1_3:14824491-14824510 | Msa0105950:CDS | 45.0% | |
| !! | TGAATTTGAGAAAGCGCCCA+AGG | + | chr1_3:14825045-14825064 | Msa0105950:CDS | 45.0% |
| TGTTGACCTAACTTTCGCTC+AGG | - | chr1_3:14823586-14823605 | None:intergenic | 45.0% | |
| ! | TCCATTGGTCATGGTCTTGA+TGG | + | chr1_3:14823961-14823980 | Msa0105950:intron | 45.0% |
| ACCATCAAGACCATGACCAA+TGG | - | chr1_3:14823965-14823984 | None:intergenic | 45.0% | |
| ! | GATTCAACGTGTCTTGGTGT+CGG | - | chr1_3:14824296-14824315 | None:intergenic | 45.0% |
| TCTTCGGATTCAACGTGTCT+TGG | - | chr1_3:14824302-14824321 | None:intergenic | 45.0% | |
| AAGGTTTGATCTACGAGGCA+CGG | - | chr1_3:14824329-14824348 | None:intergenic | 45.0% | |
| TGTCTTTGCTACTGCTAGTC+GGG | - | chr1_3:14824468-14824487 | None:intergenic | 45.0% | |
| ACATCTCAAAAGCAAGCTGG+AGG | + | chr1_3:14824491-14824510 | Msa0105950:CDS | 45.0% | |
| !! | TGAATTTGAGAAAGCGCCCA+AGG | + | chr1_3:14825045-14825064 | Msa0105950:CDS | 45.0% |
| TTGTTTACTACCCCCTCTGC+TGG | + | chr1_3:14823559-14823578 | Msa0105950:intron | 50.0% | |
| TACGAGGCACGGAATCTCTT+CGG | - | chr1_3:14824318-14824337 | None:intergenic | 50.0% | |
| GTCTTTGCTACTGCTAGTCG+GGG | - | chr1_3:14824467-14824486 | None:intergenic | 50.0% | |
| TTGTTTACTACCCCCTCTGC+TGG | + | chr1_3:14823559-14823578 | Msa0105950:intron | 50.0% | |
| TACGAGGCACGGAATCTCTT+CGG | - | chr1_3:14824318-14824337 | None:intergenic | 50.0% | |
| GTCTTTGCTACTGCTAGTCG+GGG | - | chr1_3:14824467-14824486 | None:intergenic | 50.0% | |
| TTTCGCTCAGGACCAGCAGA+GGG | - | chr1_3:14823574-14823593 | None:intergenic | 55.0% | |
| GCTGGTCCTGAGCGAAAGTT+AGG | + | chr1_3:14823577-14823596 | Msa0105950:intron | 55.0% | |
| TTTCGCTCAGGACCAGCAGA+GGG | - | chr1_3:14823574-14823593 | None:intergenic | 55.0% | |
| GCTGGTCCTGAGCGAAAGTT+AGG | + | chr1_3:14823577-14823596 | Msa0105950:intron | 55.0% | |
| TTCGCTCAGGACCAGCAGAG+GGG | - | chr1_3:14823573-14823592 | None:intergenic | 60.0% | |
| CTTTCGCTCAGGACCAGCAG+AGG | - | chr1_3:14823575-14823594 | None:intergenic | 60.0% | |
| TTCGCTCAGGACCAGCAGAG+GGG | - | chr1_3:14823573-14823592 | None:intergenic | 60.0% | |
| CTTTCGCTCAGGACCAGCAG+AGG | - | chr1_3:14823575-14823594 | None:intergenic | 60.0% | |
| TCGCTCAGGACCAGCAGAGG+GGG | - | chr1_3:14823572-14823591 | None:intergenic | 65.0% | |
| TCGCTCAGGACCAGCAGAGG+GGG | - | chr1_3:14823572-14823591 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 14823026 | 14825229 | 14823026 | ID=Msa0105950;Name=Msa0105950 |
| chr1_3 | mRNA | 14823026 | 14825229 | 14823026 | ID=Msa0105950-mRNA-1;Parent=Msa0105950;Name=Msa0105950-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.33|0.5|0.75|0.33|0.5|4|114|178 |
| chr1_3 | exon | 14823026 | 14823034 | 14823026 | ID=Msa0105950-mRNA-1:exon:5739;Parent=Msa0105950-mRNA-1 |
| chr1_3 | exon | 14823275 | 14823475 | 14823275 | ID=Msa0105950-mRNA-1:exon:5740;Parent=Msa0105950-mRNA-1 |
| chr1_3 | exon | 14824425 | 14824580 | 14824425 | ID=Msa0105950-mRNA-1:exon:5741;Parent=Msa0105950-mRNA-1 |
| chr1_3 | exon | 14824945 | 14825229 | 14824945 | ID=Msa0105950-mRNA-1:exon:5742;Parent=Msa0105950-mRNA-1 |
| chr1_3 | CDS | 14823026 | 14823034 | 14823026 | ID=Msa0105950-mRNA-1:cds;Parent=Msa0105950-mRNA-1 |
| chr1_3 | CDS | 14823275 | 14823475 | 14823275 | ID=Msa0105950-mRNA-1:cds;Parent=Msa0105950-mRNA-1 |
| chr1_3 | CDS | 14824425 | 14824580 | 14824425 | ID=Msa0105950-mRNA-1:cds;Parent=Msa0105950-mRNA-1 |
| chr1_3 | CDS | 14824945 | 14825115 | 14824945 | ID=Msa0105950-mRNA-1:cds;Parent=Msa0105950-mRNA-1 |
| chr1_3 | three_prime_UTR | 14825116 | 14825229 | 14825116 | ID=Msa0105950-mRNA-1:three_prime_utr;Parent=Msa0105950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
